kg_covid_19.transform_utils package

Subpackages

• kg_covid_19.transform_utils.chembl package
  • Submodules
  • kg_covid_19.transform_utils.chembl.chembl_transform module
  • Module contents
• kg_covid_19.transform_utils.drug_central package
  • Submodules
  • kg_covid_19.transform_utils.drug_central.drug_central module
  • Module contents
• kg_covid_19.transform_utils.gocam_transform package
  • Submodules
  • kg_covid_19.transform_utils.gocam_transform.gocam_transform module
  • Module contents
• kg_covid_19.transform_utils.intact package
  • Submodules
  • kg_covid_19.transform_utils.intact.intact module
  • Module contents
• kg_covid_19.transform_utils.ontology package
  • Submodules
  • kg_covid_19.transform_utils.ontology.ontology_transform module
  • Module contents
• kg_covid_19.transform_utils.pharmgkb package
  • Submodules
  • kg_covid_19.transform_utils.pharmgkb.pharmgkb module
  • Module contents
• kg_covid_19.transform_utils.sars_cov_2_gene_annot package
  • Submodules
  • kg_covid_19.transform_utils.sars_cov_2_gene_annot.sars_cov_2_gene_annot module
  • Module contents
• kg_covid_19.transform_utils.scibite_cord package
  • Submodules
  • kg_covid_19.transform_utils.scibite_cord.scibite_cord module
  • Module contents
• kg_covid_19.transform_utils.string_ppi package
  • Submodules
  • kg_covid_19.transform_utils.string_ppi.string_ppi module
  • Module contents
• kg_covid_19.transform_utils.ttd package
  • Submodules
  • kg_covid_19.transform_utils.ttd.ttd module
  • Module contents
• kg_covid_19.transform_utils.zhou_host_proteins package
  • Submodules
  • kg_covid_19.transform_utils.zhou_host_proteins.zhou_transform module
  • Module contents

Submodules

kg_covid_19.transform_utils.transform module

class kg_covid_19.transform_utils.transform.Transform(source_name, input_dir: str = None, output_dir: str = None)

Bases: object

Parent class for transforms, that sets up a lot of default file info

DEFAULT_INPUT_DIR = 'data/raw'

DEFAULT_OUTPUT_DIR = 'data/transformed'

run(data_file: Optional[str] = None)

Module contents