@prefix adms: . @prefix dc: . @prefix dcmitype: . @prefix dcterms: . @prefix doap: . @prefix foaf: . @prefix kgr: . @prefix rdfs: . @prefix schema1: . @prefix skos: . @prefix xsd: . kgr:1000genomes a schema1:DataSource ; rdfs:label "1000 Genomes Project (IGSR)" ; dcterms:created "2025-09-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The International Genome Sample Resource (IGSR) maintains and shares the open human genetic variation resources built by the 1000 Genomes Project, updates them to current reference assemblies (e.g., GRCh38), and incorporates new data sets and populations. IGSR provides a searchable data portal, bulk download methods, and guidance for proper reuse and citation." ; dcterms:identifier "1000genomes" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:1000genomes.data-portal, kgr:1000genomes.ftp, kgr:1000genomes.globus-docs, kgr:1000genomes.ncbi-mirror, kgr:1000genomes.portal, kgr:activedriverdb.downloads, kgr:aop-db.data, kgr:biodata-catalyst.picsure, kgr:dbnsfp.academic, kgr:dbnsfp.commercial ; schema1:name "1000 Genomes Project (IGSR)" ; skos:inScheme "genetic variation", "genomics", "human populations", "organisms", "population genetics" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ebi . kgr:4dn a schema1:DataSource ; rdfs:label "4D Nucleome Data Portal" ; dcterms:created "2025-06-10T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The 4D Nucleome (4DN) Network aims to understand the principles underlying nuclear organization in space and time (the 4th dimension). The 4DN Data Portal provides a platform to search, visualize, and download nucleomics data generated by the 4DN Network and other reference datasets." ; dcterms:identifier "4dn" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:4dn.chromatin_tracing, kgr:4dn.hic, kgr:4dn.higlass, kgr:4dn.jupyterhub, kgr:4dn.micrometa, kgr:4dn.microscopy, kgr:genomickb.graph, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:name "4D Nucleome Data Portal" ; skos:inScheme "epigenomics", "genomics", "medical imaging" ; adms:status "Active" ; foaf:homepage . kgr:5srrnadb a schema1:DataSource ; rdfs:label "5SRNAdb" ; dcterms:created "2025-09-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "5SRNAdb (5S rRNA Database) is a curated repository of unique full-length 5S ribosomal RNA sequences and genes across Bacteria, Archaea, and Eukaryota (cytoplasmic and organellar), providing alignments, secondary structure diagrams, taxonomic browsing, and downloadable custom or global alignments for comparative and structural studies." ; dcterms:identifier "5srrnadb" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , , ; schema1:hasPart kgr:5srrnadb.downloads.archaea.sequences, kgr:5srrnadb.downloads.archaea.structural, kgr:5srrnadb.downloads.bacteria.sequences, kgr:5srrnadb.downloads.bacteria.structural, kgr:5srrnadb.downloads.eukaryota.sequences, kgr:5srrnadb.downloads.eukaryota.structural, kgr:5srrnadb.downloads.mitochondria.sequences, kgr:5srrnadb.downloads.mitochondria.structural, kgr:5srrnadb.downloads.plastids.sequences, kgr:5srrnadb.downloads.plastids.structural, kgr:5srrnadb.portal, kgr:genecards.web.interface, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db ; schema1:name "5SRNAdb" ; skos:inScheme "genomics", "non-coding RNA" ; adms:status "Active" ; foaf:homepage . kgr:aact a schema1:Aggregator ; rdfs:label "Aggregate Analysis of ClinicalTrials.gov (AACT) Database" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "AACT is a publicly available relational PostgreSQL database that contains all protocol and result data elements from every study registered in ClinicalTrials.gov, refreshed daily from the ClinicalTrials.gov registry." ; dcterms:identifier "aact" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:aact.database, kgr:aact.dictionary, kgr:aact.downloads, kgr:aact.pipe_delimited, kgr:aact.playground, kgr:aact.schema, kgr:clinicaltrialsgov.aact, kgr:klocd.portal, kgr:multiomics-kp.graph, kgr:translator.ctkp.graph ; schema1:identifier "aact" ; schema1:name "Aggregate Analysis of ClinicalTrials.gov (AACT) Database" ; doap:repository ; skos:altLabel "AACT", "Aggregate Analysis of ClinicalTrial.gov" ; skos:inScheme "biomedical", "clinical", "clinical trials", "public health" ; adms:status "Active" ; foaf:homepage . kgr:aao a schema1:Ontology ; rdfs:label "Amphibian gross anatomy" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Description unavailable." ; dcterms:identifier "aao" ; dcterms:modified "2026-09-08T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:aao.owl ; schema1:name "Amphibian gross anatomy" ; skos:inScheme "anatomy and development" ; adms:status "Inactive" ; foaf:homepage . kgr:aberowl a schema1:Aggregator ; rdfs:label "AberOWL" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "AberOWL is an ontology repository and reasoning service developed by the Bio-Ontology Research Group (BORG) at KAUST. It loads biomedical ontologies into OWL reasoners (ELK by default) and offers Description Logic queries in Manchester OWL Syntax, full-text search over classes and ontologies, rewriting of SPARQL queries that embed OWL DL frames, a REST API and an MCP server for AI agents. Ontology metadata is synced daily from the OBO Foundry and BioPortal. As of 2026-10-04 it listed 971 ontologies with about 12.1 million classes, running on the redesigned Aber-OWL 2 software." ; dcterms:identifier "aberowl" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:aberowl.api, kgr:aberowl.code, kgr:aberowl.code-legacy, kgr:aberowl.docs, kgr:aberowl.mcp, kgr:aberowl.ontology-list, kgr:aberowl.portal, kgr:aberowl.sparql, kgr:bioregistry.registry.json, kgr:bioregistry.sssom, kgr:lipro.owl ; schema1:name "AberOWL" ; skos:altLabel "Aber-OWL", "Aber-OWL 2" ; skos:inScheme "biomedical", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:achilles a schema1:DataSource ; rdfs:label "Project Achilles" ; dcterms:created "2025-07-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Project Achilles is a systematic effort aimed at identifying and cataloging gene essentiality across hundreds of genomically characterized cancer cell lines. Achilles uses genome-scale RNAi and CRISPR-Cas9 genetic perturbation reagents to silence or knockout individual genes and identify those genes that affect cell survival." ; dcterms:identifier "achilles" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:achilles.docs, kgr:achilles.downloads, kgr:bioteque.embeddings, kgr:cellminer.cellminercdb, kgr:enrichr-kg.graph, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j ; schema1:name "Project Achilles" ; skos:inScheme "biomedical", "cancer", "genomics" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:broad . kgr:activedriverdb a schema1:DataSource ; rdfs:label "ActiveDriverDB" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ActiveDriverDB is a human proteo-genomics database for interpreting genetic variation, disease mutations, and cancer driver genes using post-translational modification sites and signaling networks." ; dcterms:identifier "activedriverdb" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:activedriverdb.api, kgr:activedriverdb.downloads, kgr:activedriverdb.portal, kgr:ptmd.total_pda ; schema1:name "ActiveDriverDB" ; doap:repository ; skos:inScheme "biomedical", "cancer", "genetic variation", "genomics", "post-translational modification", "proteomics" ; adms:status "Inactive" ; foaf:homepage . kgr:acukg a schema1:KnowledgeGraph ; rdfs:label "AcuKG" ; dcterms:created "2026-06-12T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "AcuKG is a comprehensive medical acupuncture knowledge graph that integrates acupuncture textbooks, official sources, clinical trials, biomedical literature, and ontology mappings to represent acupoints, anatomical locations, conditions, therapeutic indications, action targets, and evidence relationships." ; dcterms:identifier "acukg" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-06-12T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:acukg.csv, kgr:acukg.json, kgr:acukg.rdf ; schema1:name "AcuKG" ; doap:repository ; skos:inScheme "anatomy and development", "biomedical", "clinical" ; adms:status "Active" ; foaf:homepage . kgr:ado a schema1:Ontology ; rdfs:label "Alzheimer's Disease Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Alzheimer's Disease Ontology is a knowledge-based ontology that encompasses varieties of concepts related to Alzheimer'S Disease, structured by upper level Basic Formal Ontology(BFO). This Ontology is enriched by the interrelated entities that demonstrate the network of the understanding on Alzheimer's disease and can be readily applied for text mining." ; dcterms:identifier "ado" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ado.kg-bioportal, kgr:ado.owl ; schema1:name "Alzheimer's Disease Ontology" ; doap:repository ; skos:inScheme "biomedical", "neurodegenerative disease", "neuroscience" ; adms:status "Active" ; foaf:homepage . kgr:adrecs a schema1:DataSource ; rdfs:label "ADReCS" ; dcterms:created "2026-05-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ADReCS is a database of adverse drug reaction terms and drug-side effect relationships used for pharmacovigilance and drug safety analysis." ; dcterms:identifier "adrecs" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:adrecs.web, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv ; schema1:name "ADReCS" ; skos:inScheme "biomedical", "pharmacology", "pharmacovigilance" ; adms:status "Active" ; foaf:homepage . kgr:adw a schema1:Ontology ; rdfs:label "Animal natural history and life history" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Description unavailable." ; dcterms:identifier "adw" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:adw.kg-bioportal, kgr:adw.owl ; schema1:name "Animal natural history and life history" ; skos:inScheme "biodiversity", "organisms" ; adms:status "Inactive" ; foaf:homepage . kgr:aelous a schema1:DataSource ; rdfs:label "AELOUS" ; dcterms:created "2026-05-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "AELOUS provides adverse event report data processed from spontaneous reporting systems for large-scale pharmacovigilance analysis." ; dcterms:identifier "aelous" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:aelous.dataset, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv ; schema1:name "AELOUS" ; skos:inScheme "biomedical", "pharmacology", "pharmacovigilance" ; adms:status "Active" ; foaf:homepage . kgr:aeo a schema1:Ontology ; rdfs:label "Anatomical Entity Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology" ; dcterms:identifier "aeo" ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:aeo.kg-bioportal, kgr:aeo.owl ; schema1:name "Anatomical Entity Ontology" ; doap:repository ; skos:inScheme "anatomy and development" ; adms:status "Inactive" ; foaf:homepage . kgr:aeolus a schema1:DataSource ; rdfs:label "Adverse Event Open Learning through Universal Standardization (AEOLUS)" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "AEOLUS (Adverse Event Open Learning through Universal Standardization) is a curated and standardized version of the FDA Adverse Event Reporting System (FAERS) that removes duplicate case records and applies standardized vocabularies, with drug names mapped to RxNorm concepts and outcomes mapped to SNOMED-CT concepts, providing pre-computed summary statistics about drug-outcome relationships." ; dcterms:identifier "aeolus" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:aeolus.standardized_data, kgr:mychem.api, kgr:service-kp.trapi ; schema1:identifier "aeolus" ; schema1:name "Adverse Event Open Learning through Universal Standardization (AEOLUS)" ; skos:altLabel "AEOLUS" ; skos:inScheme "biomedical", "clinical", "drug discovery", "pharmacology", "pharmacovigilance" ; adms:status "Active" ; foaf:homepage . kgr:aero a schema1:Ontology ; rdfs:label "Adverse Event Reporting Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Adverse Event Reporting Ontology (AERO) is an ontology aimed at supporting clinicians at the time of data entry, increasing quality and accuracy of reported adverse events" ; dcterms:identifier "aero" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:aero.kg-bioportal, kgr:aero.owl ; schema1:name "Adverse Event Reporting Ontology" ; skos:inScheme "biomedical", "pharmacology", "pharmacovigilance" ; adms:status "Inactive" ; foaf:homepage . kgr:afcs a schema1:DataSource ; rdfs:label "Alliance for Cellular Signaling" ; dcterms:created "2026-05-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Alliance for Cellular Signaling (AfCS) was a large-scale collaborative signaling biology project that generated and disseminated data about cellular signaling networks, including protein-protein interaction data from high-throughput screens in B lymphocytes and cardiac myocytes. AfCS also supported the UCSD-Nature Signaling Gateway Molecule Pages, a peer-reviewed database of mammalian signaling proteins with structured information about protein interactions, protein states, state transitions, and function. IntAct preserves an AFCS interaction dataset as part of its computationally maintained datasets." ; dcterms:identifier "afcs" ; dcterms:isReferencedBy , , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , ; schema1:hasPart kgr:afcs.intact.mitab, kgr:afcs.molecule-pages, kgr:intact.api, kgr:intact.datasets, kgr:intact.ftp.psi25, kgr:intact.ftp.psi30, kgr:intact.ftp.psimitab, kgr:intact.ftp.psimitab.all ; schema1:name "Alliance for Cellular Signaling" ; skos:altLabel "AfCS", "AfCS-Nature Molecule Pages", "Signaling Gateway Molecule Pages", "UCSD-Nature Signaling Gateway" ; skos:inScheme "pathways", "protein interactions", "proteomics", "signal transduction", "systems biology" ; adms:status "Inactive" ; foaf:homepage ; foaf:maker kgr:university-of-california-san-diego . kgr:afo a schema1:Ontology ; rdfs:label "Allotrope Foundation Ontology" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Allotrope Foundation Ontology (AFO) is a suite of ontologies and controlled vocabularies from the Allotrope Foundation for representing laboratory analytical instruments, processes, materials, results, and related scientific data." ; dcterms:identifier "afo" ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:afo.kg-bioportal, kgr:afo.ontobee, kgr:afo.release, kgr:metabokg.graph, kgr:metabokg.schema ; schema1:name "Allotrope Foundation Ontology" ; skos:altLabel "AFO" ; skos:inScheme "chemistry and biochemistry", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:afpo a schema1:Ontology ; rdfs:label "African Population Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "AfPO is an ontology that can be used in the study of diverse populations across Africa. It brings together publicly available demographic, anthropological and genetic data relating to African people in a standardised and structured format. The AfPO can be employed to classify African study participants comprehensively in prospective research studies. It can also be used to classify past study participants by mapping them using a language or ethnicity identifier or synonyms." ; dcterms:identifier "afpo" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:afpo.owl ; schema1:name "African Population Ontology" ; doap:repository ; skos:inScheme "genomics", "human populations", "organisms", "population genetics" ; adms:status "Active" ; foaf:homepage . kgr:agcros a schema1:DataSource ; rdfs:label "Agricultural Collaborative Research Outcomes System" ; dcterms:created "2026-07-01T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Agricultural Collaborative Research Outcomes System (AgCROS) is a USDA Agricultural Research Service \"network of networks\" that integrates multiple agricultural research databases into a single point of access. Its member networks include GRACEnet (Greenhouse gas Reduction through Agricultural Carbon Enhancement network), the Nutrient Uptake and Outcomes Network (NUOnet), Resilient Economic Agricultural Practices (REAP), the Long-Term Agroecosystem Research (LTAR) Network, and others. AgCROS holds field-level data on soil properties, greenhouse gas fluxes, crop yields, and management practices from long-term agricultural experiments, and serves as the primary upstream data source for the Soil Organic Carbon Knowledge Graph (SOCKG)." ; dcterms:identifier "agcros" ; dcterms:license "U.S. Government Work (public domain)" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:agcros.portal, kgr:sockg.graph ; schema1:name "Agricultural Collaborative Research Outcomes System" ; skos:inScheme "agriculture", "environment" ; adms:status "Active" ; foaf:homepage . kgr:agro a schema1:Ontology ; rdfs:label "Agronomy Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Ontology of agronomic practices, agronomic techniques, and agronomic variables used in agronomic experiments" ; dcterms:identifier "agro" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:agro.kg-bioportal, kgr:agro.owl ; schema1:name "Agronomy Ontology" ; doap:repository ; skos:inScheme "agriculture" ; adms:status "Active" ; foaf:homepage . kgr:agroportal a schema1:Aggregator ; rdfs:label "AgroPortal" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "AgroPortal is an open repository and portal for ontologies, vocabularies, thesauri, and other semantic artefacts in agronomy, food, plant sciences, biodiversity, and related domains. Built on the BioPortal technology (now the OntoPortal software), it provides ontology hosting, versioning, search, browsing, metadata and FAIRness assessment, mappings between ontologies, text annotation, ontology recommendation, a REST API, and a SPARQL endpoint. It was launched at LIRMM (CNRS and University of Montpellier) in 2016 with Stanford University and is now maintained by INRAE. As of October 2026 its API listed 264 ontologies, including the Crop Ontology trait dictionaries." ; dcterms:identifier "agroportal" ; dcterms:isReferencedBy ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:agroportal.annotator, kgr:agroportal.api, kgr:agroportal.api-docs, kgr:agroportal.ontoportal-docs, kgr:agroportal.portal, kgr:agroportal.sparql, kgr:bioregistry.registry.json, kgr:bioregistry.sssom ; schema1:name "AgroPortal" ; doap:repository ; skos:inScheme "agriculture", "information technology", "metadata", "organisms", "plants" ; adms:status "Active" ; foaf:homepage . kgr:agrovoc a schema1:Ontology ; rdfs:label "AGROVOC" ; dcterms:created "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "AGROVOC is the multilingual controlled vocabulary of the Food and Agriculture Organization of the United Nations (FAO), covering agriculture, food, nutrition, fisheries, forestry, the environment and related areas. It is a SKOS-XL thesaurus of more than 41,400 concepts and 1.2 million terms in up to 42 languages, edited in VocBench and published as linked open data with mappings to other vocabularies such as the NAL Thesaurus, EuroVoc, DBpedia and GeoNames. AGROVOC is used to index and retrieve agricultural information and to align terms across datasets, and is available through a Skosmos browser, a SPARQL endpoint, a REST API and monthly RDF dumps." ; dcterms:identifier "agrovoc" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:agrovoc.api, kgr:agrovoc.browser, kgr:agrovoc.core.nt, kgr:agrovoc.core.rdf, kgr:agrovoc.docs, kgr:agrovoc.lod.nq, kgr:agrovoc.lod.nt, kgr:agrovoc.sparql, kgr:agrovoc.void ; schema1:name "AGROVOC" ; skos:altLabel "AGROVOC Multilingual Thesaurus", "FAO AGROVOC" ; skos:inScheme "agriculture", "environment", "food", "nutrition" ; skos:notation "FAIRsharing.anpj91" ; adms:status "Active" ; foaf:homepage . kgr:aism a schema1:Ontology ; rdfs:label "Ontology for the Anatomy of the Insect SkeletoMuscular system (AISM)" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The AISM contains terms used in insect biodiversity research for describing structures of the exoskeleton and the skeletomuscular system. It aims to serve as the basic backbone of generalized terms to be expanded with order-specific terminology." ; dcterms:identifier "aism" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:aism.json, kgr:aism.kg-bioportal, kgr:aism.obo, kgr:aism.owl ; schema1:name "Ontology for the Anatomy of the Insect SkeletoMuscular system (AISM)" ; doap:repository ; skos:inScheme "anatomy and development", "insects", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:alliance a schema1:Aggregator ; rdfs:label "Alliance of Genome Resources" ; dcterms:created "2025-08-13T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Alliance of Genome Resources (Alliance) is a collaborative platform integrating model organism knowledge (FlyBase, MGD, RGD, SGD, WormBase, Xenbase, ZFIN) and Gene Ontology Consortium annotations to provide harmonized comparative genomics, gene function, phenotype, disease association, expression, orthology, and variant data for cross-species research and translation." ; dcterms:identifier "alliance" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , ; schema1:hasPart kgr:alliance.api, kgr:alliance.downloads, kgr:alliance.jbrowse2, kgr:alliance.mine, kgr:alliance.openapi, kgr:alliance.portal, kgr:alliance.textpresso, kgr:automat.alliance-orthologs, kgr:genecards.web.interface, kgr:kg-alzheimers.graph, kgr:kg-monarch.graph, kgr:kg-monarch.graph.duckdb, kgr:kg-monarch.graph.jsonl, kgr:kg-monarch.graph.jsonl.edges, kgr:kg-monarch.graph.jsonl.nodes, kgr:kg-monarch.graph.neo4j, kgr:kg-monarch.graph.neo4j.edges, kgr:kg-monarch.graph.neo4j.nodes, kgr:kg-monarch.graph.rdf, kgr:mygene.api, kgr:service-kp.trapi, kgr:sri-reference-kg.graph, kgr:translator.alliance.graph, kgr:translator.translator_kg.graph ; schema1:name "Alliance of Genome Resources" ; skos:inScheme "genomics", "model organisms", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:alphafold a schema1:DataSource ; rdfs:label "AlphaFold Protein Structure Database" ; dcterms:created "2026-06-15T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The AlphaFold Protein Structure Database (AlphaFold DB) is a freely accessible database of predicted protein structures developed by Google DeepMind and EMBL-EBI. It provides open access to over 200 million protein structure predictions generated by the AlphaFold deep learning system, covering the human proteome and the proteomes of many other organisms as well as the UniProt reference proteomes. Each entry includes the predicted three-dimensional structure together with per-residue confidence (pLDDT) and predicted aligned error (PAE) metrics." ; dcterms:identifier "alphafold" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:alphafold.api, kgr:alphafold.docs, kgr:alphafold.downloads, kgr:alphafold.web, kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:europepmc.textmined-terms, kgr:genecards.web.interface ; schema1:name "AlphaFold Protein Structure Database" ; doap:repository ; skos:inScheme "information technology", "machine learning", "protein structure", "proteomics", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:alphamissense a schema1:DataSource ; rdfs:label "AlphaMissense" ; dcterms:created "2026-06-15T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "AlphaMissense is a deep learning model from Google DeepMind that predicts the pathogenicity of missense variants across the human proteome. It provides precomputed pathogenicity scores and classifications (likely benign, likely pathogenic, or ambiguous) for all approximately 71 million possible single amino acid substitutions in the human genome, as well as substitution effect scores for the entire proteome. The predictions are distributed via bulk download and accessible through hosted viewers and genome browsers." ; dcterms:identifier "alphamissense" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:alphamissense.docs, kgr:alphamissense.predictions, kgr:alphamissense.software, kgr:alphamissense.viewer, kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:dbnsfp.academic, kgr:dbnsfp.commercial ; schema1:name "AlphaMissense" ; doap:repository ; skos:inScheme "biomedical", "clinical", "genetic variation", "genomics", "information technology", "machine learning", "precision medicine", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:alzkb a schema1:KnowledgeGraph ; rdfs:label "Alzheimer's Knowledge Base" ; dcterms:created "2025-06-24T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A knowledge base for AI research in Alzheimer Disease, based on graph databases." ; dcterms:identifier "alzkb" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:alzkb.browser, kgr:alzkb.data ; schema1:name "Alzheimer's Knowledge Base" ; doap:repository ; skos:inScheme "biomedical", "drug discovery", "genomics", "information technology", "machine learning", "neurodegenerative disease", "neuroscience" ; adms:status "Active" ; foaf:homepage . kgr:aminode a schema1:DataSource ; rdfs:label "Aminode" ; dcterms:created "2026-06-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Aminode performs evolutionary profiling of proteins and provides a user-friendly web tool for the routine and rapid inference of evolutionarily constrained regions (ECRs) in the human proteome, based on comparisons across many species." ; dcterms:identifier "aminode" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:aminode.site, kgr:genecards.web.interface ; schema1:name "Aminode" ; skos:inScheme "genomics", "molecular evolution", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:amphx a schema1:Ontology ; rdfs:label "The Amphioxus Development and Anatomy Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology for the development and anatomy of Amphioxus (Branchiostoma lanceolatum)." ; dcterms:identifier "amphx" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:amphx.kg-bioportal, kgr:amphx.obo, kgr:amphx.owl ; schema1:name "The Amphioxus Development and Anatomy Ontology" ; doap:repository ; skos:inScheme "anatomy and development" ; adms:status "Active" ; foaf:homepage . kgr:amyco a schema1:DataSource ; rdfs:label "The Amyloidoses Collection (AmyCo) Database" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Amyloidoses Collection (AmyCo) database contains manually curated data from biomedical literature on amyloidoses and other diseases related to amyloid deposition. It classifies 75 diseases and provides disease-gene associations. The resource is no longer independently accessible but is integrated into the DISEASES database." ; dcterms:identifier "amyco" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:amyco.annotations ; schema1:identifier "amyco" ; schema1:name "The Amyloidoses Collection (AmyCo) Database" ; skos:altLabel "AmyCo" ; skos:inScheme "biomedical", "clinical", "rare disease" ; adms:status "Orphaned" ; foaf:homepage . kgr:annotator a schema1:Aggregator ; rdfs:label "Annotator Service" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Annotator Service is an NCATS Biomedical Data Translator service that provides detailed annotations for biomedical entities identified by CURIE. It aggregates metadata such as synonyms, descriptions, classifications, and cross-references from multiple knowledge sources (including BioThings services) to enhance entity understanding and interoperability across the Translator ecosystem." ; dcterms:identifier "annotator" ; dcterms:modified "2026-07-02T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:annotator.api, kgr:annotator.portal ; schema1:identifier "annotator" ; schema1:name "Annotator Service" ; skos:inScheme "biomedical" ; adms:status "Active" ; foaf:homepage . kgr:aop-db a schema1:Aggregator ; rdfs:label "AOP-DB" ; dcterms:created "2025-06-24T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Adverse Outcome Pathway Database (AOP-DB) is an EPA-developed integrative knowledgebase that connects chemicals and stressors to molecular initiating events, key events across biological organization levels, and adverse outcomes relevant to human health and ecological risk assessment. It harmonizes data from toxicology, high‑throughput screening, pathway, gene/protein, and phenotype resources to enable computational toxicology, mode-of-action analysis, and predictive risk prioritization." ; dcterms:hasVersion "2" ; dcterms:identifier "aop-db" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:alzkb.browser, kgr:alzkb.data, kgr:aop-db.data, kgr:aop-db.manual, kgr:aop-db.portal, kgr:aop-db.sparql ; schema1:name "AOP-DB" ; skos:inScheme "adverse outcome pathways", "environment", "pathways", "toxicology" ; adms:status "Active" ; foaf:homepage . kgr:aop-wiki a schema1:DataSource ; rdfs:label "AOP-Wiki" ; dcterms:created "2025-09-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The AOP-Wiki is the primary collaborative authoring and curation interface for the Adverse Outcome Pathway Knowledge Base (AOP-KB). It enables the community to develop, review, browse, and export Adverse Outcome Pathways (AOPs) linking molecular initiating events through key events to adverse outcomes relevant to human and ecological risk assessment. Structured exports (XML and tabular subsets) support computational toxicology, ontology mapping, and integration into predictive assessment workflows." ; dcterms:hasVersion "2.8" ; dcterms:identifier "aop-wiki" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:aop-db.data, kgr:aop-db.sparql, kgr:aop-wiki.devhandbook, kgr:aop-wiki.dynamic-aop-xml, kgr:aop-wiki.ke-components, kgr:aop-wiki.ke-overview, kgr:aop-wiki.ker, kgr:aop-wiki.nightly-xml, kgr:aop-wiki.portal, kgr:aop-wiki.quarterly-xml, kgr:aopwiki-rdf.converter, kgr:aopwiki-rdf.dashboard, kgr:aopwiki-rdf.grlc-api, kgr:aopwiki-rdf.multiversion-sparql, kgr:aopwiki-rdf.queries, kgr:aopwiki-rdf.snorql, kgr:aopwiki-rdf.sparql, kgr:aopwiki-rdf.ttl, kgr:aopwiki-rdf.void, kgr:biobricks-aopwiki.graph ; schema1:name "AOP-Wiki" ; skos:inScheme "adverse outcome pathways", "environment", "pathways", "toxicology" ; adms:status "Active" ; foaf:homepage . kgr:aopwiki-rdf a schema1:KnowledgeGraph ; rdfs:label "AOP-Wiki RDF" ; dcterms:created "2026-08-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "AOP-Wiki RDF is an RDF representation of the AOP-Wiki, the authoring interface of the Adverse Outcome Pathway Knowledge Base. The AOP-Wiki XML export is converted to RDF/Turtle every week using the AOP Ontology (aopo) together with Dublin Core, CHEMINF and NCIT, and is enriched with gene mappings (gene names in key events matched to HGNC symbols and resolved to Ensembl, NCBI Gene, UniProt and Protein Ontology identifiers through BridgeDb) and chemical cross-references. AOPs, key events, key event relationships, biological events, stressors and chemicals get identifiers.org URIs and are linked to ChEBI, GO, PATO, UBERON, CL, NCBITaxon and HGNC. The 2026.08.15 release has about 340,000 triples, covering 595 AOPs, 1,595 key events, 2,360 key event relationships, 754 stressors and 430 chemicals. The data is served from a public SPARQL endpoint with a SNORQL query interface on top of it. A grlc REST API built from the same curated query library, a second endpoint holding every quarterly AOP-Wiki snapshot since 2018 as named graphs, and a dashboard for version-over-version trends are also available." ; dcterms:hasVersion "2026.08.15" ; dcterms:identifier "aopwiki-rdf" ; dcterms:isReferencedBy , ; dcterms:language "en" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:aopwiki-rdf.converter, kgr:aopwiki-rdf.dashboard, kgr:aopwiki-rdf.grlc-api, kgr:aopwiki-rdf.multiversion-sparql, kgr:aopwiki-rdf.queries, kgr:aopwiki-rdf.snorql, kgr:aopwiki-rdf.sparql, kgr:aopwiki-rdf.ttl, kgr:aopwiki-rdf.void ; schema1:name "AOP-Wiki RDF" ; doap:repository ; skos:altLabel "AOP-Wiki RDF Explorer", "AOPWikiRDF" ; skos:inScheme "adverse outcome pathways", "chemistry and biochemistry", "environment", "pathways", "toxicology" ; adms:status "Active" ; foaf:homepage . kgr:apo a schema1:Ontology ; rdfs:label "Ascomycete phenotype ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A structured controlled vocabulary for the phenotypes of Ascomycete fungi" ; dcterms:identifier "apo" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:apo.kg-bioportal, kgr:apo.obo, kgr:apo.owl ; schema1:name "Ascomycete phenotype ontology" ; doap:repository ; skos:inScheme "microbiology", "phenotype" ; adms:status "Active" ; foaf:homepage . kgr:apollo_sv a schema1:Ontology ; rdfs:label "Apollo Structured Vocabulary" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation." ; dcterms:identifier "apollo_sv" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:apollo_sv.kg-bioportal, kgr:apollo_sv.owl ; schema1:name "Apollo Structured Vocabulary" ; doap:repository ; skos:inScheme "biomedical", "epidemiology", "infectious disease", "public health" ; adms:status "Active" ; foaf:homepage . kgr:aragorn a schema1:Aggregator ; rdfs:label "ARAGORN" ; dcterms:created "2025-11-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ARAGORN (Autonomous Relay Agent for Generation Of Ranked Networks) is an NCATS Translator Autonomous Relay Agent (ARA) that performs query operations by compiling and ranking data from multiple ARAGORN-affiliated knowledge provider services. ARAGORN acts as an intermediary between user queries and underlying knowledge providers, aggregating results, performing inference, and ranking answers based on evidence and confidence scores. It implements the Translator Reasoner API (TRAPI) standard for biomedical question-answering." ; dcterms:identifier "aragorn" ; dcterms:license ; dcterms:modified "2026-06-01T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:aragorn.api, kgr:aragorn.ui, kgr:ars.api, kgr:ars.portal, kgr:cqs.code, kgr:shepherd.aragorn.api ; schema1:identifier "aragorn" ; schema1:name "ARAGORN" ; doap:repository ; skos:altLabel "ARAGORN", "Autonomous Relay Agent for Generation Of Ranked Networks" ; skos:inScheme "biomedical", "information technology" ; skos:related "translator" ; adms:status "Active" ; foaf:homepage . kgr:araport a schema1:DataSource ; rdfs:label "Araport (Arabidopsis Information Portal)" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Araport (the Arabidopsis Information Portal) was a J. Craig Venter Institute (JCVI) project that provided an integrated data warehouse, genome browser, and analysis apps for Arabidopsis thaliana research. Its central product, Araport11, is the complete 2016/2017 reannotation of the A. thaliana Col-0 reference genome, refining gene models and adding non-coding RNAs based on extensive RNA-seq evidence. The Araport web portal was retired around 2018 after funding ended, with its data and services migrated to TAIR, NCGR, and the Bio-Analytic Resource (BAR/ThaleMine). The Araport11 gene/locus annotation remains a standard reference annotation, distributed via TAIR and Phytozome, and is used by downstream resources such as the Stress Knowledge Map." ; dcterms:identifier "araport" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:araport.araport11, kgr:araport.thalemine, kgr:skm.ckn.v1.annotations, kgr:skm.ckn.v1.graph, kgr:skm.ckn.v2.annotations, kgr:skm.ckn.v2.graph, kgr:skm.pss.live.boolnet.annotations, kgr:skm.pss.live.boolnet.graph, kgr:skm.pss.live.dot, kgr:skm.pss.live.sbgn, kgr:skm.pss.live.sbml, kgr:skm.pss.live.sif.dinar.graph, kgr:skm.pss.live.sif.original.annotations, kgr:skm.pss.live.sif.original.graph, kgr:skm.pss.live.sif.projection.annotations, kgr:skm.pss.live.sif.projection.graph ; schema1:name "Araport (Arabidopsis Information Portal)" ; skos:inScheme "agriculture", "genomics", "model organisms", "organisms", "plants" ; adms:status "Inactive" ; foaf:homepage . kgr:arax a schema1:Aggregator ; rdfs:label "ARAX Translator Reasoner" ; dcterms:created "2025-10-31T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ARAX (Expander Agent) is a graph-based modular reasoning tool for translational biomedicine developed as part of the NCATS Biomedical Data Translator program. It provides a web browser user interface and TRAPI-compliant API for encoding translational biomedical questions and integrating knowledge across multiple sources. ARAX features ARAXi, an intuitive domain-specific language for specifying knowledge graph analysis workflows. The system accesses around 40 Knowledge Providers covering over 100 underlying knowledge sources and provides versatile methods for scoring and ranking result subgraphs. ARAX uses RTX-KG2 as its primary knowledge graph and supports query planning, knowledge gathering, overlay of contextual information, filtering, and result ranking through five core modules (Expander, Overlay, Filter, Resultify, and Ranker)." ; dcterms:identifier "arax" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:arax.api, kgr:arax.araxi.docs, kgr:arax.examples, kgr:arax.github, kgr:arax.ui, kgr:ars.api, kgr:ars.portal, kgr:shepherd.arax.api ; schema1:identifier "arax" ; schema1:name "ARAX Translator Reasoner" ; skos:altLabel "ARAX", "Expander Agent" ; skos:inScheme "biomedical", "precision medicine" ; skos:related "translator" ; adms:status "Active" ; foaf:homepage . kgr:archs4 a schema1:DataSource ; rdfs:label "ARCHS4" ; dcterms:created "2026-05-21T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ARCHS4 is a Ma'ayan Lab resource for uniformly processed public RNA-seq data that provides gene and transcript count matrices, metadata search, and interactive exploration for large collections of human and mouse samples aggregated from GEO and SRA." ; dcterms:identifier "archs4" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , ; schema1:hasPart kgr:archs4.archs4py, kgr:archs4.archs4r, kgr:archs4.help, kgr:archs4.human.gene_counts, kgr:archs4.human.transcript_counts, kgr:archs4.mouse.gene_counts, kgr:archs4.mouse.transcript_counts, kgr:archs4.portal, kgr:archs4.zoo, kgr:chea-kg.graph, kgr:chea-kg.libraries, kgr:chea.libraries, kgr:enrichr-kg.graph ; schema1:name "ARCHS4" ; doap:repository ; skos:inScheme "biomedical", "gene expression profiling", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:aro a schema1:Ontology ; rdfs:label "Antibiotic Resistance Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Antibiotic resistance genes and mutations" ; dcterms:identifier "aro" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:aro.kg-bioportal, kgr:aro.owl ; schema1:name "Antibiotic Resistance Ontology" ; doap:repository ; skos:inScheme "biological systems", "microbiology", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:arrayexpress a schema1:DataSource ; rdfs:label "ArrayExpress" ; dcterms:created "2026-10-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ArrayExpress is EMBL-EBI's archive of functional genomics experiments, holding raw and processed data and MIAME/MINSEQE-compliant metadata from microarray and high-throughput sequencing studies, including bulk and single-cell RNA-seq. Since 2021 it has been served as a collection within BioStudies, and its accessions keep the E-XXXX-n form. It is the European counterpart of NCBI GEO and supplies the experiments reanalyzed by Expression Atlas." ; dcterms:identifier "arrayexpress" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-10-03T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:arrayexpress.annotare, kgr:arrayexpress.api, kgr:arrayexpress.ftp, kgr:arrayexpress.portal, kgr:biostudies.ftp, kgr:europepmc.textmined-terms, kgr:expressionatlas.baseline-summary, kgr:expressionatlas.differential-results, kgr:expressionatlas.experiment-downloads, kgr:expressionatlas.ftp-bulk, kgr:expressionatlas.r-objects, kgr:omicsdi.api, kgr:omicsdi.portal, kgr:open-tggates.arrayexpress-human-in-vitro, kgr:open-tggates.arrayexpress-rat-in-vitro, kgr:open-tggates.arrayexpress-rat-repeat-dose, kgr:open-tggates.arrayexpress-rat-single-dose, kgr:organoiddb.all-organoid-samples, kgr:organoiddb.general-samples, kgr:organoiddb.organoid-specificity-samples ; schema1:name "ArrayExpress" ; skos:altLabel "AE" ; skos:inScheme "biological systems", "gene expression profiling", "genomics", "single-cell analysis" ; adms:status "Active" ; foaf:homepage . kgr:ars a schema1:Aggregator ; rdfs:label "Autonomous Relay System" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Autonomous Relay System (ARS) is the primary interface and query routing service for the NCATS Biomedical Data Translator, orchestrating queries across multiple knowledge providers and reasoning agents." ; dcterms:identifier "ars" ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ars.api, kgr:ars.portal ; schema1:identifier "ars" ; schema1:name "Autonomous Relay System" ; doap:repository ; skos:altLabel "ARS", "Translator ARS" ; skos:inScheme "biomedical" ; adms:status "Active" ; foaf:homepage . kgr:atc a schema1:DataSource ; rdfs:label "Anatomical Therapeutic Chemical Classification System" ; dcterms:created "2026-05-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Anatomical Therapeutic Chemical (ATC) classification system groups active medicinal substances by the organ or system on which they act and by therapeutic, pharmacological, and chemical properties. The ATC/DDD methodology is maintained by the WHO Collaborating Centre for Drug Statistics Methodology and endorsed by WHO for drug utilization monitoring and research." ; dcterms:identifier "atc" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:atc.classification, kgr:atc.index, kgr:atc.kg-bioportal, kgr:atc.methodology, kgr:kg-idg.graph, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv ; schema1:name "Anatomical Therapeutic Chemical Classification System" ; skos:altLabel "ATC", "ATC/DDD", "ATC/DDD Index", "WHOCC ATC/DDD Index" ; skos:inScheme "biomedical", "clinical", "clinical coding", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:atgo a schema1:Ontology ; rdfs:label "Autophagy Ontology" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ATGO (Autophagy Ontology) is a hierarchical functional ontology of autophagy processes built through Active Interaction Mapping of genetic interaction data from Saccharomyces cerevisiae. The second-generation ontology contains 220 functions representing autophagy organization including vesicle transport, cell cycle, and stress response pathways." ; dcterms:identifier "atgo" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:atgo.ontology ; schema1:identifier "atgo" ; schema1:name "Autophagy Ontology" ; skos:altLabel "ATGO" ; skos:inScheme "systems biology" ; adms:status "Inactive" ; foaf:homepage . kgr:athena a schema1:Aggregator ; rdfs:label "Athena" ; dcterms:created "2025-11-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Athena is the OHDSI (Observational Health Data Sciences and Informatics) standardized vocabulary repository that provides access to standardized terminologies and vocabularies for observational healthcare data. It includes SNOMED CT, RxNorm, LOINC, ICD codes, and many other standard vocabularies, along with mappings between them. Athena enables the transformation of healthcare data into the OMOP Common Data Model format for federated research across multiple healthcare systems. Access to vocabulary selection and download workflows is mediated through the Athena web application rather than stable public download URLs." ; dcterms:identifier "athena" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:athena.mappings, kgr:athena.vocabularies, kgr:athena.web, kgr:ohdsi.athena, kgr:ohdsi.athena_vocabularies, kgr:ohdsi.omop_cdm ; schema1:identifier "athena" ; schema1:name "Athena" ; skos:altLabel "Athena", "OHDSI Athena" ; skos:inScheme "biomedical", "clinical", "clinical coding", "electronic health records", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:ato a schema1:Ontology ; rdfs:label "Amphibian taxonomy" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Description unavailable." ; dcterms:identifier "ato" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:ato.kg-bioportal, kgr:ato.owl ; schema1:name "Amphibian taxonomy" ; skos:inScheme "organisms", "taxonomy" ; adms:status "Inactive" ; foaf:homepage . kgr:atom a schema1:KnowledgeGraph ; rdfs:label "ATOM" ; dcterms:created "2025-11-22T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ATOM (Anti-tumor Biomaterial Knowledge Graph) is a knowledge graph construction approach that extracts structured relationships about anti-tumor biomaterials from unstructured biomedicine literature, enabling researchers to efficiently access information about tumor treatment materials and their relationships." ; dcterms:identifier "atom" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:atom.kg, kgr:atom.pipeline ; schema1:name "ATOM" ; skos:inScheme "biomedical", "cancer", "drug discovery", "information technology", "literature", "natural language processing" ; adms:status "Inactive" ; foaf:homepage . kgr:auntbertha a schema1:DataSource ; rdfs:label "Aunt Bertha (findhelp)" ; dcterms:created "2026-07-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Aunt Bertha (now operating as findhelp) is a nationwide social care directory of free and reduced-cost health and human services, including food, housing, financial assistance, and other community programs. It provides structured records of service names, descriptions, contact information, locations, languages, cost, availability, hours, and service types." ; dcterms:identifier "auntbertha" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:auntbertha.site, kgr:dreamkg.graph ; schema1:name "Aunt Bertha (findhelp)" ; skos:inScheme "public health", "social determinants of health" ; adms:status "Active" ; foaf:homepage . kgr:automat a schema1:Aggregator ; rdfs:label "Automat" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A RENCI service that proxies Plater-based TRAPI endpoints for individual knowledge graphs (such as the ROBOKOP KG, Ubergraph, CAM-KP and COHD) and publishes per-source knowledge graphs, built with ORION, as KGX downloads. Part of NCATS Biomedical Data Translator." ; dcterms:identifier "automat" ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:automat.alliance-orthologs, kgr:automat.binding, kgr:automat.biolink, kgr:automat.camkp, kgr:automat.cebs, kgr:automat.cohd, kgr:automat.ctd, kgr:automat.ctkp, kgr:automat.drugcentral, kgr:automat.ehr-clinical-connections, kgr:automat.gtex, kgr:automat.gtopdb, kgr:automat.gwascatalog, kgr:automat.hetio, kgr:automat.hgnc, kgr:automat.hmdb, kgr:automat.humangoa, kgr:automat.intact, kgr:automat.maytreatkp, kgr:automat.molepro, kgr:automat.ohd-carolina, kgr:automat.panther, kgr:automat.pharos, kgr:automat.reactome, kgr:automat.robokopkg, kgr:automat.robokopplus, kgr:automat.stringdb, kgr:automat.tmkp, kgr:automat.ubergraph, kgr:automat.viralproteome, kgr:ohd-carolina.trapi ; schema1:name "Automat" ; doap:repository ; skos:inScheme "biomedical" ; adms:status "Active" ; foaf:homepage . kgr:babel a schema1:Aggregator ; rdfs:label "Babel" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Babel is the NCATS Biomedical Data Translator pipeline, built at RENCI, that groups equivalent identifiers from many biomedical vocabularies into cliques and assigns each clique a preferred identifier, label and Biolink type. Release 2026jul22 holds about 605.9 million CURIEs in 388.5 million cliques, built against Biolink Model 4.4.3. Its compendia, synonym and conflation files back the Translator Node Normalizer and Name Resolver services." ; dcterms:hasVersion "2026jul22" ; dcterms:identifier "babel" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:babel.code, kgr:babel.compendia, kgr:babel.conflation, kgr:babel.docs, kgr:babel.duckdb, kgr:babel.kgx, kgr:babel.synonyms, kgr:name-resolver.api, kgr:name-resolver.translator-api, kgr:node-normalizer.api, kgr:node-normalizer.api.translator ; schema1:name "Babel" ; doap:repository ; skos:altLabel "NCATS Babel", "Translator Babel" ; skos:inScheme "biomedical", "information technology", "metadata" ; adms:status "Active" ; foaf:homepage . kgr:bacdive a schema1:DataSource ; rdfs:label "BacDive" ; dcterms:created "2025-11-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "BacDive (Bacterial Diversity Metadatabase) is the world's largest database for standardized bacterial information, containing strain-level data on morphology, physiology, growth conditions, and isolation sources for over 99,000 bacterial strains. It integrates research data from diverse sources and provides freely accessible, standardized information with Digital Object Identifiers for each strain." ; dcterms:identifier "bacdive" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:bacdive.api, kgr:bacdive.client_examples, kgr:bacdive.portal, kgr:kg-microbe.graph.biomedical, kgr:kg-microbe.graph.biomedical-function, kgr:kg-microbe.graph.core, kgr:kg-microbe.graph.function, kgr:kg-microbe.graph.raw, kgr:mediadive.portal, kgr:mediadive.rest_api, kgr:mediadive.sparql, kgr:metatraits.gtdb.family-summary, kgr:metatraits.gtdb.genus-summary, kgr:metatraits.gtdb.species-summary, kgr:metatraits.ncbi.family-summary, kgr:metatraits.ncbi.genus-summary, kgr:metatraits.ncbi.species-summary, kgr:metatraits.traits, kgr:rdf-portal.sparql.primary ; schema1:name "BacDive" ; doap:repository ; skos:inScheme "microbiology" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:dsmz-leibniz-institute-dsmz-german-collection-of-m . kgr:bactotraits a schema1:DataSource ; rdfs:label "BactoTraits" ; dcterms:created "2025-11-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A comprehensive database of bacterial phenotypic traits including morphology, physiology, ecology, and growth characteristics for thousands of bacterial species. BactoTraits provides standardized trait annotations for comparative microbiology and systems biology applications." ; dcterms:identifier "bactotraits" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:bactotraits.database, kgr:kg-microbe.graph.biomedical, kgr:kg-microbe.graph.biomedical-function, kgr:kg-microbe.graph.core, kgr:kg-microbe.graph.function, kgr:kg-microbe.graph.raw ; schema1:name "BactoTraits" ; skos:altLabel "Bacterial Traits Database", "BactoTraits" ; skos:inScheme "microbiology", "systems biology" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:univ-lorraine . kgr:bao a schema1:Ontology ; rdfs:label "BioAssay Ontology" ; dcterms:created "2026-06-15T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The BioAssay Ontology (BAO) is a formal OWL-DL ontology that establishes common reference metadata terms and definitions for describing low- and high-throughput drug and probe screening assays and their results. It captures assay design, screening formats, detection technologies, perturbagens, biological targets, endpoints, and measured results, enabling integration, aggregation, retrieval, and analysis of bioassay data across resources such as PubChem and ChEMBL. BAO is modularized into reusable components covering biology, properties, and controlled vocabularies." ; dcterms:identifier "bao" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:bao.complete-owl, kgr:bao.core-owl, kgr:bao.kg-bioportal, kgr:bao.website, kgr:biobtree.api, kgr:biobtree.graph.human-subgraph ; schema1:name "BioAssay Ontology" ; doap:repository ; skos:inScheme "biomedical", "drug discovery", "high-throughput screening", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:batman a schema1:DataSource ; rdfs:label "BATMAN-TCM" ; dcterms:created "2026-02-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "BATMAN-TCM is a web resource and database for known and predicted interactions between traditional Chinese medicine ingredients and target proteins, supporting target prediction, enrichment analysis, and molecular-mechanism exploration for ingredients, herbs, and formulas." ; dcterms:identifier "batman" ; dcterms:isReferencedBy , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:batman.web, kgr:unibiomap.auxs, kgr:unibiomap.links, kgr:unibiomap.pred, kgr:unibiomap.pred.full ; schema1:name "BATMAN-TCM" ; skos:altLabel "BATMAN", "BATMAN-TCM", "BATMAN-TCM 2.0", "Bioinformatics Analysis Tool for Molecular mechANism of Traditional Chinese Medicine" ; skos:inScheme "chemistry and biochemistry", "drug discovery", "natural products", "pathways", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:bbmri-eric-directory a schema1:DataSource ; rdfs:label "BBMRI-ERIC Directory" ; dcterms:created "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The BBMRI-ERIC Directory is a catalog of biobanks in the member states of BBMRI-ERIC, the European research infrastructure for biobanking, and of their sample and data collections. It records collection-level metadata such as diagnoses (coded with ICD-10 and Orphanet codes), material types, data categories, storage conditions, quality labels and access conditions, following the MIABIS data standard. Biobank records are contributed through BBMRI National Nodes. The Directory runs on MOLGENIS EMX2 and listed 852 biobanks and 5,475 collections when checked on 2026-10-05. It links to the BBMRI-ERIC Negotiator, which researchers use to request access to samples and data." ; dcterms:identifier "bbmri-eric-directory" ; dcterms:isReferencedBy , ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:bbmri-eric-directory.api.graphql, kgr:bbmri-eric-directory.csv, kgr:bbmri-eric-directory.jsonld, kgr:bbmri-eric-directory.miabis, kgr:bbmri-eric-directory.negotiator, kgr:bbmri-eric-directory.portal, kgr:bbmri-eric-directory.ttl ; schema1:name "BBMRI-ERIC Directory" ; doap:repository ; skos:altLabel "BBMRI Directory", "BBMRI-ERIC Biobank Directory" ; skos:inScheme "biomedical", "clinical" ; adms:status "Active" ; foaf:homepage . kgr:bcgo a schema1:Ontology ; rdfs:label "Beta Cell Genomics Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An application ontology built for beta cell genomics studies." ; dcterms:identifier "bcgo" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:bcgo.kg-bioportal, kgr:bcgo.owl ; schema1:name "Beta Cell Genomics Ontology" ; doap:repository ; skos:inScheme "anatomy and development", "biomedical", "diabetes mellitus" ; adms:status "Inactive" ; foaf:homepage . kgr:bco a schema1:Ontology ; rdfs:label "Biological Collections Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology to support the interoperability of biodiversity data, including data on museum collections, environmental/metagenomic samples, and ecological surveys." ; dcterms:identifier "bco" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:bco.kg-bioportal, kgr:bco.owl ; schema1:name "Biological Collections Ontology" ; doap:repository ; skos:inScheme "biodiversity", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:bfo a schema1:Ontology ; rdfs:label "Basic Formal Ontology" ; dcterms:created "2025-06-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The upper level ontology upon which OBO Foundry ontologies are built." ; dcterms:identifier "bfo" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:bfo.kg-bioportal, kgr:bfo.obo, kgr:bfo.owl, kgr:ecso.owl, kgr:efo.obo, kgr:efo.owl, kgr:sri-reference-kg.graph ; schema1:identifier "bfo" ; schema1:name "Basic Formal Ontology" ; doap:repository ; skos:inScheme "general" ; adms:status "Active" ; foaf:homepage . kgr:bgee a schema1:DataSource ; rdfs:label "Bgee - Gene Expression Database" ; dcterms:created "2025-05-07T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Bgee is a database for retrieval and comparison of gene expression patterns across multiple animal species, providing information about gene expression in different anatomical structures, developmental stages, and species." ; dcterms:identifier "bgee" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , , , , , , , , , , , , , , , , , , , , , , , , ; schema1:hasPart kgr:alzkb.browser, kgr:alzkb.data, kgr:bgee.expr_calls, kgr:bgee.rdf, kgr:bgee.site, kgr:bgee.sparql, kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:genecards.expression.data, kgr:genecards.web.interface, kgr:ibkh.graph, kgr:indra.cogex.code, kgr:kg-alzheimers.graph, kgr:kg-monarch.graph, kgr:kg-monarch.graph.duckdb, kgr:kg-monarch.graph.jsonl, kgr:kg-monarch.graph.jsonl.edges, kgr:kg-monarch.graph.jsonl.nodes, kgr:kg-monarch.graph.neo4j, kgr:kg-monarch.graph.neo4j.edges, kgr:kg-monarch.graph.neo4j.nodes, kgr:kg-monarch.graph.rdf, kgr:primekg.graph, kgr:rdf-portal.sparql.sib, kgr:spoke-okn.graph, kgr:spoke.graph, kgr:sri-reference-kg.graph, kgr:translator.bgee.graph, kgr:translator.translator_kg.graph ; schema1:identifier "bgee" ; schema1:name "Bgee - Gene Expression Database" ; doap:repository ; skos:inScheme "gene expression profiling", "genomics", "organisms" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:sib . kgr:bigg a schema1:DataSource ; rdfs:label "BiGG Models" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "BiGG Models is a knowledgebase of genome-scale metabolic network reconstructions." ; dcterms:identifier "bigg" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:molepro.api, kgr:molepro.catalog, kgr:molepro.graph.edges, kgr:molepro.graph.nodes, kgr:molepro.trapi, kgr:obo-db-ingest.bigg.compartment.json, kgr:obo-db-ingest.bigg.compartment.obo, kgr:obo-db-ingest.bigg.compartment.owl, kgr:obo-db-ingest.bigg.compartment.sssom.tsv, kgr:obo-db-ingest.bigg.compartment.tsv, kgr:obo-db-ingest.bigg.metabolite.json, kgr:obo-db-ingest.bigg.metabolite.obo, kgr:obo-db-ingest.bigg.metabolite.owl, kgr:obo-db-ingest.bigg.metabolite.sssom.tsv, kgr:obo-db-ingest.bigg.metabolite.tsv, kgr:obo-db-ingest.bigg.model.json, kgr:obo-db-ingest.bigg.model.obo, kgr:obo-db-ingest.bigg.model.owl, kgr:obo-db-ingest.bigg.model.tsv, kgr:obo-db-ingest.bigg.reaction.json, kgr:obo-db-ingest.bigg.reaction.obo, kgr:obo-db-ingest.bigg.reaction.owl, kgr:obo-db-ingest.bigg.reaction.sssom.tsv, kgr:obo-db-ingest.bigg.reaction.tsv ; schema1:identifier "bigg-models" ; schema1:name "BiGG Models" ; doap:repository ; skos:inScheme "information technology", "metabolism", "pathways", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:bila a schema1:Ontology ; rdfs:label "Bilateria anatomy" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Description unavailable." ; dcterms:identifier "bila" ; dcterms:modified "2026-09-08T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:bila.owl ; schema1:name "Bilateria anatomy" ; skos:inScheme "anatomy and development" ; adms:status "Inactive" ; foaf:homepage . kgr:bind a schema1:DataSource ; rdfs:label "Biomolecular Interaction Network Database (BIND)" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Biomolecular Interaction Network Database (BIND) was a database designed to store full descriptions of interactions, molecular complexes, and pathways. It is no longer active as a standalone resource but its data has been incorporated into other databases like BOND and iRefIndex." ; dcterms:identifier "bind" ; dcterms:isReferencedBy , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:bind.data, kgr:hippie.current.mitab, kgr:hippie.current.tab, kgr:irefindex.database, kgr:pathwaycommons.biopax, kgr:pathwaycommons.downloads, kgr:pathwaycommons.gmt, kgr:pathwaycommons.sif, kgr:pathwaycommons.txt ; schema1:name "Biomolecular Interaction Network Database (BIND)" ; skos:altLabel "BIND" ; skos:inScheme "pathways", "protein interactions", "proteomics" ; adms:status "Inactive" ; foaf:homepage . kgr:bindingdb a schema1:DataSource ; rdfs:label "BindingDB" ; dcterms:created "2025-06-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "BindingDB is a public, web-accessible database of measured binding affinities between small, drug-like molecules and protein targets, focusing on the interactions of proteins with small, drug-like molecules. It contains 3.0M data points for 1.3M compounds and 9.6K targets, serving as a crucial resource for drug discovery, pharmacology, and related fields." ; dcterms:identifier "bindingdb" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:automat.binding, kgr:automat.robokopkg, kgr:bindingdb.all_2d, kgr:bindingdb.all_3d, kgr:bindingdb.all_tsv, kgr:bindingdb.api, kgr:bindingdb.articles_2d, kgr:bindingdb.articles_3d, kgr:bindingdb.articles_tsv, kgr:bindingdb.chebi_mapping, kgr:bindingdb.chembl_2d, kgr:bindingdb.chembl_3d, kgr:bindingdb.chembl_tsv, kgr:bindingdb.cid_mapping, kgr:bindingdb.covid19_2d, kgr:bindingdb.covid19_3d, kgr:bindingdb.covid19_tsv, kgr:bindingdb.drugbank_mapping, kgr:bindingdb.patents_2d, kgr:bindingdb.patents_3d, kgr:bindingdb.patents_tsv, kgr:bindingdb.pubchem_2d, kgr:bindingdb.pubchem_3d, kgr:bindingdb.pubchem_tsv, kgr:bindingdb.sid_mapping, kgr:bindingdb.target_sequences, kgr:bindingdb.uniprot_mapping, kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:molepro.api, kgr:molepro.catalog, kgr:molepro.graph.edges, kgr:molepro.graph.nodes, kgr:molepro.trapi, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:pubchem.substances.asn, kgr:pubchem.substances.sdf, kgr:service-kp.trapi, kgr:spoke-okn.graph, kgr:spoke.graph, kgr:translator.bindingdb.graph, kgr:translator.translator_kg.graph, kgr:unibiomap.auxs, kgr:unibiomap.links, kgr:unibiomap.pred, kgr:unibiomap.pred.full ; schema1:identifier "bindingdb" ; schema1:name "BindingDB" ; skos:inScheme "biomedical", "chemistry and biochemistry", "drug discovery", "pharmacology" ; skos:notation "FAIRsharing.3b36hk" ; adms:status "Active" ; foaf:homepage . kgr:bio101 a schema1:KnowledgeGraph ; rdfs:label "KB Bio 101" ; dcterms:created "2026-06-12T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A knowledge base created from an introductory biology textbook" ; dcterms:identifier "bio101" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:bio101.exported-kb, kgr:bio101.kg-bioportal ; schema1:name "KB Bio 101" ; skos:inScheme "biological systems" ; adms:status "Active" ; foaf:homepage . kgr:bio2rdf a schema1:Aggregator ; rdfs:label "Bio2RDF (Linked Biomedical RDF Network)" ; dcterms:created "2025-12-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Bio2RDF (Linked Biomedical RDF Network) is a large-scale open-source semantic web integration project that converts over 35 diverse biological and biomedical databases into standardized RDF (Resource Description Framework) linked data, providing 11 billion RDF triples accessible through SPARQL endpoints and REST APIs. It enables federated queries across heterogeneous data sources using W3C standards and the Semanticscience Integrated Ontology (SIO)." ; dcterms:identifier "bio2rdf" ; dcterms:isReferencedBy , , , , ; dcterms:license ; dcterms:modified "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:bio2rdf.api, kgr:bio2rdf.biosearch, kgr:bio2rdf.dumps, kgr:bio2rdf.sparql, kgr:bio2rdf.web, kgr:oregano.graph ; schema1:identifier "bio2rdf" ; schema1:name "Bio2RDF (Linked Biomedical RDF Network)" ; doap:repository ; skos:altLabel "Bio2RDF", "Linked Biomedical RDF Network" ; skos:inScheme "biomedical", "genomics" ; adms:status "Inactive" ; foaf:homepage ; foaf:maker kgr:maastricht-ids . kgr:biobricks-aopwiki a schema1:KnowledgeGraph ; rdfs:label "BioBricks AOP-Wiki" ; dcterms:created "2025-12-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "BioBricks AOP-Wiki is an open knowledge graph for Adverse Outcome Pathways from the AOP-Wiki." ; dcterms:identifier "biobricks-aopwiki" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biobricks-aopwiki.graph, kgr:biobricks-aopwiki.sparql, kgr:biobricks-aopwiki.tpf ; schema1:name "BioBricks AOP-Wiki" ; doap:repository ; skos:inScheme "adverse outcome pathways", "toxicology" ; adms:status "Active" ; foaf:homepage . kgr:biobricks-ice a schema1:KnowledgeGraph ; rdfs:label "BioBricks ICE" ; dcterms:created "2025-12-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "BioBricks ICE (Integrated Chemical Environment) is an open knowledge graph for cheminformatics and chemical safety data from EPA's CompTox database." ; dcterms:identifier "biobricks-ice" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biobricks-ice.graph, kgr:biobricks-ice.sparql, kgr:biobricks-ice.tpf ; schema1:name "BioBricks ICE" ; doap:repository ; skos:inScheme "cheminformatics", "chemistry and biochemistry", "toxicology" ; adms:status "Active" ; foaf:homepage . kgr:biobricks-mesh a schema1:KnowledgeGraph ; rdfs:label "BioBricks MeSH" ; dcterms:created "2025-12-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "BioBricks MeSH is an open knowledge graph of Medical Subject Headings (MeSH) biomedical vocabulary." ; dcterms:identifier "biobricks-mesh" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biobricks-mesh.graph, kgr:biobricks-mesh.sparql, kgr:biobricks-mesh.tpf ; schema1:name "BioBricks MeSH" ; doap:repository ; skos:inScheme "biomedical", "literature" ; adms:status "Active" ; foaf:homepage . kgr:biobricks-pubchem-annotations a schema1:KnowledgeGraph ; rdfs:label "BioBricks PubChem Annotations" ; dcterms:created "2025-12-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "BioBricks PubChem Annotations is an open knowledge graph of chemical annotations from PubChem." ; dcterms:identifier "biobricks-pubchem-annotations" ; dcterms:license ; dcterms:modified "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biobricks-pubchem-annotations.graph, kgr:biobricks-pubchem-annotations.sparql, kgr:biobricks-pubchem-annotations.tpf ; schema1:name "BioBricks PubChem Annotations" ; doap:repository ; skos:inScheme "chemistry and biochemistry" ; adms:status "Active" ; foaf:homepage . kgr:biobricks-tox21 a schema1:KnowledgeGraph ; rdfs:label "BioBricks Tox21" ; dcterms:created "2025-12-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "BioBricks Tox21 is an open knowledge graph for Tox21 toxicology screening data." ; dcterms:identifier "biobricks-tox21" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biobricks-tox21.graph, kgr:biobricks-tox21.sparql, kgr:biobricks-tox21.tpf ; schema1:name "BioBricks Tox21" ; doap:repository ; skos:inScheme "drug discovery", "high-throughput screening", "toxicology" ; adms:status "Active" ; foaf:homepage . kgr:biobricks-toxcast a schema1:KnowledgeGraph ; rdfs:label "BioBricks ToxCast" ; dcterms:created "2025-12-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "BioBricks ToxCast is an open knowledge graph for EPA ToxCast high-throughput screening data." ; dcterms:identifier "biobricks-toxcast" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biobricks-toxcast.graph, kgr:biobricks-toxcast.sparql, kgr:biobricks-toxcast.tpf ; schema1:name "BioBricks ToxCast" ; doap:repository ; skos:inScheme "drug discovery", "high-throughput screening", "toxicology" ; adms:status "Active" ; foaf:homepage . kgr:biobtree a schema1:KnowledgeGraph ; rdfs:label "BioBTree" ; dcterms:created "2026-06-15T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "BioBTree is a unified biomedical knowledge graph that integrates more than 70 primary data sources, including Ensembl, UniProt, PDB, ChEMBL, Reactome, and ClinVar, into a single queryable graph of cross-reference edges spanning genes, proteins, compounds, diseases, pathways, and clinical data. It lets users search, map, and traverse identifiers across databases with a chain-query syntax (for example, mapping a gene in Ensembl to UniProt proteins and on to PDB structures), and exposes the graph through a REST API, a Model Context Protocol (MCP) server, and a question-answering web interface for grounding LLM responses in structured biomedical data." ; dcterms:identifier "biobtree" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-06-24T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biobtree.api, kgr:biobtree.docs, kgr:biobtree.graph.human-subgraph, kgr:biobtree.mcp, kgr:biobtree.qa, kgr:sugi-atlas.manifest, kgr:sugi-atlas.portal ; schema1:name "BioBTree" ; doap:repository ; skos:inScheme "biomedical", "clinical", "drug discovery", "genomics", "pathways", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:biocyc a schema1:DataSource ; rdfs:label "BioCyc" ; dcterms:created "2025-03-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "BioCyc is a collection of 20,070 Pathway/Genome Databases (PGDBs) for model eukaryotes and for thousands of microbes, plus software tools for exploring them. BioCyc is an encyclopedic reference that contains curated data from 146,000 publications." ; dcterms:identifier "biocyc" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:genecards.web.interface, kgr:humancyc.downloads, kgr:humancyc.portal, kgr:imodulondb.browser, kgr:imodulondb.datasets, kgr:obo-db-ingest.bigg.metabolite.sssom.tsv, kgr:skm.ckn.v1.annotations, kgr:skm.ckn.v1.graph, kgr:skm.ckn.v2.annotations, kgr:skm.ckn.v2.graph, kgr:skm.pss.live.boolnet.annotations, kgr:skm.pss.live.boolnet.graph, kgr:skm.pss.live.dot, kgr:skm.pss.live.sbgn, kgr:skm.pss.live.sbml, kgr:skm.pss.live.sif.dinar.graph, kgr:skm.pss.live.sif.original.annotations, kgr:skm.pss.live.sif.original.graph, kgr:skm.pss.live.sif.projection.annotations, kgr:skm.pss.live.sif.projection.graph, kgr:stitch.api, kgr:stitch.downloads, kgr:stitch.portal, kgr:string.cog.links, kgr:string.cog.links.detailed, kgr:string.database, kgr:string.protein.links, kgr:string.protein.links.detailed, kgr:string.protein.links.full, kgr:string.protein.physical.links, kgr:string.protein.physical.links.detailed, kgr:string.protein.physical.links.full ; schema1:name "BioCyc" ; skos:inScheme "metabolism", "pathways" ; adms:status "Active" ; foaf:homepage . kgr:biodata-catalyst a schema1:Aggregator ; rdfs:label "NHLBI BioData Catalyst" ; dcterms:created "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "NHLBI BioData Catalyst (BDC) is the cloud data ecosystem of the National Heart, Lung, and Blood Institute. It hosts more than 500 heart, lung, blood and sleep datasets (over 5 PB), including TOPMed whole-genome sequencing with linked phenotypes, RECOVER, HeartShare and National Sleep Research Resource studies, and links them to data discovery (PIC-SURE), a Gen3 data commons, cloud analysis workspaces (Seven Bridges and Terra) and the TOPMed Imputation Server. Most individual-level data are controlled access and require an eRA Commons login and an approved dbGaP data access request; a small set of open-access studies can be explored without authorization." ; dcterms:identifier "biodata-catalyst" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:biodata-catalyst.analysis-platforms, kgr:biodata-catalyst.docs, kgr:biodata-catalyst.gen3, kgr:biodata-catalyst.imputation-server, kgr:biodata-catalyst.picsure, kgr:biodata-catalyst.picsure-api, kgr:biodata-catalyst.portal ; schema1:name "NHLBI BioData Catalyst" ; skos:altLabel "BDC", "BioData Catalyst", "NHLBI BDC" ; skos:inScheme "biomedical", "cardiovascular disease", "clinical", "genomics", "precision medicine" ; adms:status "Active" ; foaf:homepage . kgr:biodivportal a schema1:Aggregator ; rdfs:label "BiodivPortal" ; dcterms:created "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "BiodivPortal is an OntoPortal-based repository of ontologies and other semantic artefacts (vocabularies, taxonomies, thesauri) for biodiversity and environmental sciences. It is a core service of the German National Research Data Infrastructure consortium NFDI4Biodiversity, led by InfAI and Freie Universität Berlin. It provides search, browsing, mappings, an annotator, a recommender, a landscape view and a REST API. As of October 2026 it reported 76 ontologies with about 3 million classes, including NCBITaxon, ChEBI and OBA. It federates with sibling OntoPortal instances such as BioPortal, AgroPortal, EcoPortal and EarthPortal." ; dcterms:identifier "biodivportal" ; dcterms:isReferencedBy ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biodivportal.annotator, kgr:biodivportal.api, kgr:biodivportal.api-docs, kgr:biodivportal.portal ; schema1:name "BiodivPortal" ; doap:repository ; skos:inScheme "biodiversity", "ecology", "environment", "information technology", "metadata", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:biofactoid a schema1:DataSource ; rdfs:label "Biofactoid" ; dcterms:created "2026-06-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Biofactoid is a web-based system that empowers authors to capture and share machine-readable summaries of the molecular-level interactions between genes, gene products, and chemical compounds described in their publications. Author-sourced pathway knowledge is grounded to standard identifiers and made openly available in computable formats for reuse in pathway and network analysis." ; dcterms:identifier "biofactoid" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biofactoid.api, kgr:biofactoid.documents, kgr:biofactoid.webapp, kgr:pathwaycommons.biopax, kgr:pathwaycommons.downloads, kgr:pathwaycommons.gmt, kgr:pathwaycommons.sif, kgr:pathwaycommons.txt ; schema1:name "Biofactoid" ; doap:repository ; skos:altLabel "Factoid" ; skos:inScheme "pathways", "systems biology" ; skos:related "biopragmatics" ; adms:status "Active" ; foaf:homepage . kgr:biogps a schema1:Aggregator ; rdfs:label "BioGPS" ; dcterms:created "2025-08-12T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "BioGPS is an extensible and customizable gene annotation portal that aggregates gene-centric data (expression profiles, functional annotations, pathways, interactions, ontologies) from numerous external resources using a community-driven plugin system. It enables interactive expression visualization across tissues/cell types and provides programmatic and bulk access to underlying annotation tables." ; dcterms:identifier "biogps" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biogps.api, kgr:biogps.downloads, kgr:biogps.faq, kgr:biogps.portal, kgr:date.archive, kgr:genecards.expression.data, kgr:genecards.web.interface, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:pharmkg.graph ; schema1:name "BioGPS" ; skos:inScheme "gene expression profiling", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:biogrid a schema1:DataSource ; rdfs:label "BioGRID" ; dcterms:created "2025-08-13T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Biological General Repository for Interaction Datasets (BioGRID) is an open, curated database of genetic, protein, and chemical interaction data, post-translational modifications (PTMs), CRISPR screen results (ORCS), and themed curation project datasets spanning model organisms and human, freely available under the MIT License." ; dcterms:identifier "biogrid" ; dcterms:isReferencedBy , , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , , , ; schema1:hasPart kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:biogrid.api, kgr:biogrid.chemicals, kgr:biogrid.identifiers, kgr:biogrid.interactions.mitab, kgr:biogrid.interactions.tab3, kgr:biogrid.ptm, kgr:biogrid.ptms-latest, kgr:biogrid.web, kgr:epsd.download, kgr:genecards.protein.interactions, kgr:genecards.web.interface, kgr:genemania.networks, kgr:hippie.current.mitab, kgr:hippie.current.tab, kgr:hpidb.mitab, kgr:humannet.network, kgr:humannet.network.symbol, kgr:iid.human_annotated_ppis, kgr:iid.mouse_annotated_ppis, kgr:irefindex.database, kgr:kg-alzheimers.graph, kgr:kg-monarch.graph, kgr:kg-monarch.graph.duckdb, kgr:kg-monarch.graph.jsonl, kgr:kg-monarch.graph.jsonl.edges, kgr:kg-monarch.graph.jsonl.nodes, kgr:kg-monarch.graph.neo4j, kgr:kg-monarch.graph.neo4j.edges, kgr:kg-monarch.graph.neo4j.nodes, kgr:kg-monarch.graph.rdf, kgr:multiomics-kp.graph, kgr:pathwaycommons.biopax, kgr:pathwaycommons.downloads, kgr:pathwaycommons.gmt, kgr:pathwaycommons.sif, kgr:pathwaycommons.txt, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:phosphogrid.portal, kgr:sri-reference-kg.graph, kgr:string.cog.links, kgr:string.cog.links.detailed, kgr:string.database, kgr:string.protein.links, kgr:string.protein.links.detailed, kgr:string.protein.links.full, kgr:string.protein.physical.links, kgr:string.protein.physical.links.detailed, kgr:string.protein.physical.links.full, kgr:unibiomap.auxs, kgr:unibiomap.links, kgr:unibiomap.pred, kgr:unibiomap.pred.full ; schema1:identifier "biogrid" ; schema1:name "BioGRID" ; skos:inScheme "genomics", "protein interactions", "proteomics", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:biohealth a schema1:KnowledgeGraph ; rdfs:label "Bio-Health KG" ; dcterms:created "2025-12-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Bio-Health KG is a dynamically-updated open knowledge network for health, integrating biomedical insights with social determinants of health." ; dcterms:identifier "biohealth" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biohealth.sparql, kgr:biohealth.tpf ; schema1:name "Bio-Health KG" ; skos:inScheme "biomedical", "public health", "social determinants of health" ; adms:status "Active" ; foaf:homepage . kgr:biolincc a schema1:DataSource ; rdfs:label "BioLINCC" ; dcterms:created "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "BioLINCC (Biologic Specimen and Data Repository Information Coordinating Center) is the National Heart, Lung, and Blood Institute (NHLBI) program that coordinates access to the NHLBI Biologic Specimen Repository and the NHLBI Data Repository. It provides a searchable catalog of de-identified datasets and biospecimens from NHLBI-funded clinical trials and epidemiological studies in cardiovascular, pulmonary, sleep and hematologic research (316 studies when checked on 2026-10-05), with study documents and data dictionaries viewable without an account. Study datasets and biospecimens are released only to qualified investigators through a request process that requires login, IRB documentation and a signed Research Materials Distribution Agreement; teaching and public use datasets are also offered on request. BioLINCC was still posting new studies in October 2026, so access has not migrated to NHLBI BioData Catalyst, although some NHLBI studies are released through BioData Catalyst or dbGaP instead. When checked on 2026-10-05 the site carried a banner stating that the repository is under review for potential modification in compliance with Administration directives." ; dcterms:identifier "biolincc" ; dcterms:isReferencedBy , ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biolincc.faq, kgr:biolincc.portal, kgr:biolincc.studies, kgr:biolincc.study-list, kgr:biolincc.teaching-datasets, kgr:biolincc.users-guide, kgr:ecrin-mdr.api, kgr:ecrin-mdr.portal ; schema1:name "BioLINCC" ; skos:altLabel "Biologic Specimen and Data Repository Information Coordinating Center", "NHLBI Biologic Specimen and Data Repository" ; skos:inScheme "biomedical", "clinical" ; adms:status "Active" ; foaf:homepage . kgr:biolink a schema1:DataModel ; rdfs:label "Biolink-Model" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Entity and association taxonomy and datamodel for life-sciences data" ; dcterms:identifier "biolink" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biolink.docs, kgr:biolink.infores.docs, kgr:biolink.kg-bioportal, kgr:biolink.model.json, kgr:biolink.model.owl, kgr:biolink.model.proto, kgr:biolink.model.shacl, kgr:biolink.model.shex, kgr:bioregistry.registry.json, kgr:bioregistry.sssom, kgr:cpathkg.code, kgr:mechreponet.kg, kgr:microbiomekg.api, kgr:omnicorp.api, kgr:omnicorp.cooccurrence, kgr:openpredict.api ; schema1:name "Biolink-Model" ; doap:repository ; skos:inScheme "general" ; adms:status "Active" ; foaf:homepage . kgr:biomarker a schema1:KnowledgeGraph ; rdfs:label "BiomarkerKB" ; dcterms:created "2025-05-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "BiomarkerKB is a Common Fund Data Ecosystem (CFDE) sponsored project to develop a knowledgebase that organizes and integrates biomarker data from different public sources, providing researchers with comprehensive, integrated access to biomarker information. This resource also covers the BiomarkerKB Knowledge Graph (BKG), the graph representation of BiomarkerKB data (formerly registered separately as `biomarkerkg`), which is available as an interactive explorer, downloadable node and edge datasets, and OKN/FRINK SPARQL and Triple Pattern Fragments endpoints." ; dcterms:identifier "biomarker" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biomarker.api, kgr:biomarker.bkg.edges.anatomy, kgr:biomarker.bkg.edges.compound, kgr:biomarker.bkg.edges.condition, kgr:biomarker.bkg.edges.role, kgr:biomarker.bkg.edges.variant, kgr:biomarker.bkg.explorer, kgr:biomarker.bkg.nodes.anatomy, kgr:biomarker.bkg.nodes.biomarker, kgr:biomarker.bkg.nodes.compound, kgr:biomarker.bkg.nodes.condition, kgr:biomarker.bkg.nodes.role, kgr:biomarker.bkg.nodes.variant, kgr:biomarker.datamodel, kgr:biomarker.downloads, kgr:biomarker.kg, kgr:biomarker.obci, kgr:biomarker.portal, kgr:biomarker.sparql, kgr:biomarker.tpf, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:name "BiomarkerKB" ; doap:repository ; skos:inScheme "biological systems", "biomedical" ; adms:status "Active" ; foaf:homepage . kgr:biomarkerkg a schema1:KnowledgeGraph ; rdfs:label "BiomarkerKB KG" ; dcterms:created "2025-05-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "BiomarkerKB KG (BKG) has been merged into the BiomarkerKB resource (id `biomarker`) to avoid confusion between the knowledgebase and its knowledge-graph representation, which have near-identical names. Use `biomarker` instead; the BKG explorer, node and edge datasets, and OKN/FRINK SPARQL and Triple Pattern Fragments endpoints are now listed there as products." ; dcterms:identifier "biomarkerkg" ; dcterms:modified "2026-07-15T00:00:00+00:00"^^xsd:dateTime ; schema1:name "BiomarkerKB KG" ; doap:repository ; skos:inScheme "biological systems", "biomedical" ; adms:status "Inactive" ; foaf:homepage . kgr:biomodels a schema1:DataSource ; rdfs:label "BioModels" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "BioModels is EMBL-EBI's repository of mathematical models of biological and biomedical systems. It holds manually curated models, which are checked to reproduce the results of their reference publication and annotated with cross-references to ontologies and databases such as GO, ChEBI, UniProt and Reactome, alongside non-curated submitted models and models generated automatically from pathway resources. Models are mainly encoded in SBML and distributed as COMBINE archives (OMEX). The models and their annotations are dedicated to the public domain under CC0." ; dcterms:identifier "biomodels" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biomodels.api, kgr:biomodels.code, kgr:biomodels.kg-bioportal, kgr:biomodels.portal, kgr:biomodels.rdf, kgr:biomodels.release.sbml, kgr:biomodels.user-guide, kgr:omicsdi.api, kgr:omicsdi.portal ; schema1:name "BioModels" ; skos:altLabel "BioModels Database", "BioModels Repository" ; skos:inScheme "biological systems", "systems biology" ; skos:notation "FAIRsharing.paz6mh" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ebi . kgr:biomuta a schema1:DataSource ; rdfs:label "BioMuta" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "BioMuta is a cancer-associated single-nucleotide variation resource that integrates mutation records from cancer genomics sources into a unified dataset with protein and disease annotations." ; dcterms:identifier "biomuta" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:biomuta.dataset, kgr:biomuta.pipeline, kgr:biomuta.portal, kgr:ptmd.total_pda ; schema1:name "BioMuta" ; doap:repository ; skos:inScheme "biomedical", "cancer", "genetic variation", "genomics", "precision medicine" ; adms:status "Active" ; foaf:homepage . kgr:bioplanet a schema1:DataSource ; rdfs:label "BioPlanet" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The NCATS BioPlanet is a comprehensive, publicly accessible informatics resource that catalogues all pathways, their healthy and disease state annotations, and targets within and relationships among them." ; dcterms:identifier "bioplanet" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:bioplanet.data, kgr:service-kp.trapi ; schema1:identifier "bioplanet" ; schema1:name "BioPlanet" ; skos:inScheme "pathways", "toxicology" ; adms:status "Active" ; foaf:homepage . kgr:bioportal a schema1:Aggregator ; rdfs:label "BioPortal" ; dcterms:created "2025-08-20T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "BioPortal is a comprehensive open repository and portal for biomedical ontologies and terminologies, providing search, browsing, mappings, versioned downloads, REST APIs, widgets, and analytics to support data integration, annotation, and semantic interoperability in the life and health sciences. As of 2025 it hosted 1,549 ontologies (1,182 public), including all OBO Foundry ontologies, which it pulls automatically, and selected UMLS vocabularies." ; dcterms:identifier "bioportal" ; dcterms:isReferencedBy , , ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:aberowl.api, kgr:aberowl.ontology-list, kgr:aberowl.portal, kgr:agroportal.annotator, kgr:agroportal.api, kgr:agroportal.ontoportal-docs, kgr:agroportal.portal, kgr:biodivportal.api, kgr:biodivportal.portal, kgr:bioportal.api, kgr:bioportal.portal, kgr:bioregistry.registry.json, kgr:bioregistry.sssom, kgr:earthportal.api, kgr:earthportal.portal, kgr:ecoportal.api, kgr:ecoportal.portal, kgr:ecso.bioportal, kgr:ekg.browser, kgr:ekg.rdf, kgr:ekg.sparql, kgr:ekg.ttl, kgr:glycocoo.bioportal, kgr:glycordf.bioportal, kgr:kg-bioportal.browser, kgr:kg-bioportal.graphs, kgr:kg-bioportal.manifest, kgr:oboe.bioportal, kgr:pheknowlator.graph, kgr:sifr-bioportal.annotator, kgr:sifr-bioportal.api, kgr:sifr-bioportal.portal ; schema1:identifier "bioportal" ; schema1:name "BioPortal" ; doap:repository ; skos:inScheme "biomedical", "clinical", "general", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:bioregistry a schema1:Aggregator ; rdfs:label "Bioregistry" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Bioregistry is an open, community-curated registry of prefixes, CURIE patterns, URI formats and resolution rules for identifier resources in biomedicine and the life and natural sciences. It imports and aligns metadata from other registries, such as identifiers.org, the OBO Foundry, BioPortal, OLS, FAIRsharing, re3data, Wikidata and N2T, and adds manual curation of its own. It also resolves CURIEs to provider URLs and publishes the registry, its cross-registry mappings and derived prefix maps as open data. As of 2026-10-04 the registry export held 2,856 prefixes." ; dcterms:identifier "bioregistry" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:bioregistry.api, kgr:bioregistry.context.jsonld, kgr:bioregistry.docs, kgr:bioregistry.portal, kgr:bioregistry.python, kgr:bioregistry.rdf.jsonld, kgr:bioregistry.rdf.ttl, kgr:bioregistry.registry.json, kgr:bioregistry.registry.tsv, kgr:bioregistry.registry.yml, kgr:bioregistry.sssom ; schema1:name "Bioregistry" ; doap:repository ; skos:inScheme "biomedical", "information technology", "metadata" ; skos:notation "FAIRsharing.250a8c" ; adms:status "Active" ; foaf:homepage . kgr:biostudies a schema1:DataSource ; rdfs:label "BioStudies" ; dcterms:created "2026-10-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "BioStudies is an EMBL-EBI repository for descriptions of biological studies. It links each study to its associated data, whether held in other EMBL-EBI databases, in external resources, or in BioStudies itself, and accepts data that do not fit into specialised archives. Studies are organised into collections with their own metadata guidelines; the largest holds supplementary data imported from Europe PMC articles, and ArrayExpress has been served as a BioStudies collection since 2021." ; dcterms:identifier "biostudies" ; dcterms:isReferencedBy , , ; dcterms:license ; dcterms:modified "2026-10-03T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:arrayexpress.api, kgr:biostudies.api, kgr:biostudies.ftp, kgr:biostudies.portal, kgr:biostudies.submission, kgr:europepmc.textmined-terms, kgr:omicsdi.api, kgr:omicsdi.portal, kgr:open-tggates.histopathology-images ; schema1:name "BioStudies" ; doap:repository ; skos:inScheme "general", "information technology", "literature", "metadata", "scholarly communication" ; adms:status "Active" ; foaf:homepage . kgr:bioteque a schema1:KnowledgeGraph ; rdfs:label "Bioteque" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A knowledge graph of biological entities and their associations that integrates and formats biomedical data as pre-calculated knowledge graph embeddings" ; dcterms:identifier "bioteque" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:bioteque.bqsupports, kgr:bioteque.code, kgr:bioteque.embeddings ; schema1:name "Bioteque" ; doap:repository ; skos:inScheme "biomedical", "information technology", "machine learning" ; adms:status "Active" ; foaf:homepage . kgr:biothings a schema1:DataSource ; rdfs:label "BioThings" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "BioThings is an ecosystem and Python SDK for building high-performance biomedical annotation APIs from one or more data sources." ; dcterms:identifier "biothings" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biothings.api-specs, kgr:biothings.portal, kgr:biothings.sdk, kgr:gtrx.api, kgr:mydisease.code, kgr:mygene.code, kgr:myvariant.code, kgr:service-kp.code, kgr:service-kp.portal, kgr:service-kp.trapi ; schema1:name "BioThings" ; doap:repository ; skos:inScheme "biomedical", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:biothings-explorer a schema1:Aggregator ; rdfs:label "BioThings Explorer" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "BioThings Explorer (BTE) is a query engine for a federated knowledge graph of biomedical APIs, developed by the Su and Wu labs at Scripps Research. It plans and runs multi-hop queries across APIs annotated in the SmartAPI registry with the x-bte extension, as well as TRAPI knowledge providers, and returns ranked results through the Translator Reasoner API (TRAPI). BTE is an Autonomous Relay Agent (ARA) in the NCATS Biomedical Data Translator and also serves team endpoints such as the Service Provider TRAPI endpoint." ; dcterms:identifier "biothings-explorer" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ars.api, kgr:ars.portal, kgr:biothings-explorer.code, kgr:biothings-explorer.meta-kg, kgr:biothings-explorer.portal, kgr:biothings-explorer.trapi, kgr:biothings-explorer.x-bte-docs, kgr:service-kp.trapi, kgr:shepherd.bte.api ; schema1:identifier "biothings-explorer" ; schema1:name "BioThings Explorer" ; doap:repository ; skos:altLabel "BTE", "BioThings Explorer TRAPI" ; skos:inScheme "biomedical", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:bitterdb a schema1:DataSource ; rdfs:label "BitterDB" ; dcterms:created "2026-06-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "BitterDB is a database of bitter-tasting compounds and their associated bitter taste receptors. It compiles bitter molecules reported in the literature together with the human and other species' bitter taste receptors (T2Rs) they activate, supporting research in chemoreception and ligand-receptor pharmacology." ; dcterms:identifier "bitterdb" ; dcterms:isReferencedBy ; dcterms:modified "2026-06-17T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:bitterdb.site, kgr:genecards.web.interface ; schema1:name "BitterDB" ; skos:inScheme "chemistry and biochemistry", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:bluesky a schema1:DataSource ; rdfs:label "BlueSky Smoke Modeling Framework" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "BlueSky is the U.S. Forest Service AirFire team's wildfire smoke modeling framework (NOT the social network of the same name). It chains together fire information, fuel loading, consumption, emissions, plume rise, and meteorological dispersion models to predict where smoke from wildland fires will travel and how it affects ground-level air quality. AirFire operates BlueSky Daily Runs that produce routine smoke forecasts, distributed through the AirFire tools portal for fire and air-quality decision support. It is developed and maintained by the USFS Pacific Northwest Research Station's Pacific Wildland Fire Sciences Laboratory." ; dcterms:identifier "bluesky" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:bluesky.code, kgr:bluesky.portal, kgr:knowwheregraph.graph ; schema1:name "BlueSky Smoke Modeling Framework" ; skos:inScheme "air pollution", "environment", "information technology", "public health", "wildfires" ; adms:status "Active" ; foaf:homepage . kgr:bmont a schema1:Ontology ; rdfs:label "Biomarker Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An application ontology that represents comprehensive knowledge involving a variety of fields of medical and biological aspects." ; dcterms:identifier "bmont" ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:bmont.BMONT.owl, kgr:bmont.kg-bioportal ; schema1:name "Biomarker Ontology" ; doap:repository ; skos:inScheme "biomedical" ; adms:status "Active" ; foaf:homepage . kgr:bootstrep a schema1:Ontology ; rdfs:label "Gene Regulation Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Description unavailable." ; dcterms:identifier "bootstrep" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:bootstrep.owl ; schema1:name "Gene Regulation Ontology" ; skos:inScheme "chemistry and biochemistry", "gene regulation", "genomics" ; adms:status "Inactive" ; foaf:homepage . kgr:brain-cell-kg a schema1:KnowledgeGraph ; rdfs:label "Brain Cell Knowledge Graph (Brain_Cell_KG)" ; dcterms:created "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Brain_Cell_KG is a knowledge graph from the Cellular Semantics group (Wellcome Sanger Institute), built with the OBASK framework, that links the Cell Ontology with mouse, human and basal ganglia brain cell type taxonomies, annotation transfer mappings between them, and mappings of cell types to Allen Mouse Brain Atlas regions, genes and neurotransmitters for brain cell annotation and reporting." ; dcterms:identifier "brain-cell-kg" ; dcterms:license ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:brain-cell-kg.owl-mappings, kgr:brain-cell-kg.reports, kgr:brain-cell-kg.repository, kgr:brain-cell-kg.wmb-bg-kg ; schema1:name "Brain Cell Knowledge Graph (Brain_Cell_KG)" ; doap:repository ; skos:inScheme "biological systems", "cell biology", "single-cell analysis" ; adms:status "Active" ; foaf:homepage . kgr:brenda a schema1:DataSource ; rdfs:label "BRENDA" ; dcterms:created "2025-11-19T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "BRENDA (BRaunschweig ENzyme DAtabase) is the main collection of enzyme functional data available to the scientific community. It provides comprehensive information on enzyme nomenclature, reaction mechanisms, specificity, functional parameters, and enzyme-related disease information. BRENDA integrates biochemical and molecular information from primary literature, patents, and data collections to support enzyme research and applications in biotechnology, medicine, and metabolic engineering. The database is curated at the Leibniz Institute DSMZ and is part of ELIXIR Core Data Resources and the German Network for Bioinformatics Infrastructure (de.NBI)." ; dcterms:identifier "brenda" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:brenda.docs, kgr:brenda.json, kgr:brenda.soap, kgr:brenda.sparql, kgr:brenda.textfile, kgr:brenda.web, kgr:europepmc.textmined-terms, kgr:ibkh.graph, kgr:rdf-portal.sparql.primary ; schema1:name "BRENDA" ; skos:inScheme "chemistry and biochemistry", "enzymes", "pathways" ; adms:status "Active" ; foaf:homepage . kgr:bridge2ai a schema1:DataSource ; rdfs:label "Bridge to Artificial Intelligence (Bridge2AI)" ; dcterms:created "2026-07-01T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Bridge to Artificial Intelligence (Bridge2AI) is an NIH Common Fund program that generates new flagship biomedical and behavioral data sets that are ethically sourced, trustworthy, well-defined, and accessible for widespread use by researchers applying artificial intelligence and machine learning. The program produces AI/ML-ready data across multiple domains, together with standards, tools, and best practices for creating and using such data, and disseminates the resulting data, models, and ethical frameworks to the broader research community." ; dcterms:identifier "bridge2ai" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:bridge2ai.portal, kgr:cm4ai_talent_kg.graph, kgr:digcfdekg.graph ; schema1:name "Bridge to Artificial Intelligence (Bridge2AI)" ; doap:repository ; skos:altLabel "Bridge to Artificial Intelligence", "Bridge2AI" ; skos:inScheme "biomedical", "clinical", "information technology", "machine learning" ; adms:status "Active" ; foaf:homepage . kgr:bspo a schema1:Ontology ; rdfs:label "Biological Spatial Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology for representing spatial concepts, anatomical axes, gradients, regions, planes, sides, and surfaces" ; dcterms:identifier "bspo" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:bspo.kg-bioportal, kgr:bspo.obo, kgr:bspo.owl, kgr:sri-reference-kg.graph ; schema1:identifier "bspo" ; schema1:name "Biological Spatial Ontology" ; doap:repository ; skos:inScheme "anatomy and development" ; adms:status "Active" ; foaf:homepage . kgr:bto a schema1:Ontology ; rdfs:label "BRENDA tissue / enzyme source" ; dcterms:created "2025-06-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A structured controlled vocabulary for the source of an enzyme comprising tissues, cell lines, cell types and cell cultures." ; dcterms:identifier "bto" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:bioteque.embeddings, kgr:bto.json, kgr:bto.kg-bioportal, kgr:bto.obo, kgr:bto.owl, kgr:cancer-genome-interpreter.clinicalkg.graph, kgr:clinicalkg.graph, kgr:efo.obo, kgr:efo.owl, kgr:genomickb.graph ; schema1:name "BRENDA tissue / enzyme source" ; doap:repository ; skos:inScheme "anatomy and development", "biological systems", "cell biology" ; adms:status "Active" ; foaf:homepage . kgr:bugsigdb a schema1:DataSource ; rdfs:label "BugSigDB" ; dcterms:created "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "BugSigDB is a community-editable database of manually curated microbial signatures from published differential abundance studies of host-associated microbiomes. Each signature lists the taxa reported as increased or decreased between two conditions and is annotated with study geography, health outcome, host body site and experimental, epidemiological and statistical methods using controlled vocabulary. The initial release held more than 2,500 signatures from more than 600 studies on three host species. The site is a Semantic MediaWiki. Data are exported hourly to GitHub and released periodically on Zenodo, and the bugsigdbr Bioconductor package gives access from R." ; dcterms:identifier "bugsigdb" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , , ; schema1:hasPart kgr:bugsigdb.bugsigdbr, kgr:bugsigdb.full_dump, kgr:bugsigdb.gmt, kgr:bugsigdb.site, kgr:bugsigdb.zenodo, kgr:micromap.api ; schema1:name "BugSigDB" ; doap:repository ; skos:inScheme "biomedical", "microbiology", "microbiome" ; adms:status "Active" ; foaf:homepage . kgr:bv-brc a schema1:DataSource ; rdfs:label "Bacterial and Viral Bioinformatics Resource Center" ; dcterms:created "2025-05-28T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Bacterial and Viral Bioinformatics Resource Center (BV-BRC) is a comprehensive resource for bacterial and viral infectious disease research that combines the data, technology, and extensive user communities from two long-running centers - PATRIC (the bacterial system) and IRD/ViPR (the viral systems). BV-BRC provides integrated data, advanced bioinformatics tools, and workflows to support the scientific community in understanding and combating infectious diseases." ; dcterms:identifier "bv-brc" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , ; schema1:hasPart kgr:bv-brc.api, kgr:bv-brc.cli, kgr:bv-brc.ftp, kgr:bv-brc.site, kgr:metatraits.gtdb.family-summary, kgr:metatraits.gtdb.genus-summary, kgr:metatraits.gtdb.species-summary, kgr:metatraits.ncbi.family-summary, kgr:metatraits.ncbi.genus-summary, kgr:metatraits.ncbi.species-summary, kgr:metatraits.traits, kgr:patric.api, kgr:patric.bv_brc_overview, kgr:patric.genomes, kgr:patric.web, kgr:spoke-okn.graph, kgr:spoke.graph ; schema1:name "Bacterial and Viral Bioinformatics Resource Center" ; doap:repository ; skos:inScheme "biomedical", "genomics", "host-pathogen interactions", "infectious disease", "microbiology" ; adms:status "Active" ; foaf:homepage . kgr:cabi-isc a schema1:DataSource ; rdfs:label "CABI Invasive Species Compendium" ; dcterms:created "2026-07-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The CABI Invasive Species Compendium (ISC) is an encyclopedic reference resource covering invasive species that threaten agriculture, biodiversity, and the environment. It brings together datasheets, distribution data, host and pathway information, images, and a bibliographic database, and is published by CABI as part of the CABI Compendium on the CABI Digital Library." ; dcterms:identifier "cabi-isc" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cabi-isc.portal, kgr:wildlifekn.graph ; schema1:name "CABI Invasive Species Compendium" ; skos:inScheme "agriculture", "biodiversity", "environment", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:cacao a schema1:DataSource ; rdfs:label "CACAO" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "CACAO is a Gene Ontology annotation competition from Texas A&M University in which students curate GO annotations for UniProt proteins from published papers, with evidence codes from the Evidence and Conclusion Ontology. Run from 2010 to 2020 as the Community Assessment of Community Annotation with Ontologies on the GONUTS wiki, it relaunched in 2024 as Creating Annotations through Critical Analysis of Original research at cacao.wiki. Accepted annotations are contributed to the Gene Ontology Consortium; QuickGO lists 4,373 annotations assigned by CACAO." ; dcterms:identifier "cacao" ; dcterms:isReferencedBy , ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cacao.api, kgr:cacao.go-annotations, kgr:cacao.gowiki, kgr:cacao.portal ; schema1:identifier "cacao" ; schema1:name "CACAO" ; skos:altLabel "CACAO", "Community Assessment of Community Annotation with Ontologies", "Creating Annotations through Critical Analysis of Original research" ; skos:inScheme "genomics" ; adms:status "Active" ; foaf:homepage . kgr:cadd a schema1:DataSource ; rdfs:label "CADD" ; dcterms:created "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "CADD (Combined Annotation Dependent Depletion) scores the deleteriousness of single nucleotide variants and small insertions and deletions throughout the human genome. It integrates many diverse annotations (gene model consequences from Ensembl VEP, conservation, regulatory and epigenetic data, protein-level and splicing predictions) into one metric by training a model to distinguish simulated de novo variants from variants fixed in human populations since the split from the human-chimpanzee ancestor. CADD provides precomputed scores for all possible SNVs in GRCh37 and GRCh38, scored indel sets, a web service for scoring VCF files, a REST API, and offline scoring scripts. Scores are free for non-commercial use; commercial use requires a license from the University of Washington." ; dcterms:identifier "cadd" ; dcterms:isReferencedBy , , ; dcterms:license ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cadd.api, kgr:cadd.docs, kgr:cadd.downloads, kgr:cadd.gnomad-indels.grch38, kgr:cadd.score, kgr:cadd.scripts, kgr:cadd.snvs.grch37, kgr:cadd.snvs.grch38, kgr:cadd.website, kgr:myvariant.api ; schema1:name "CADD" ; skos:altLabel "Combined Annotation Dependent Depletion" ; skos:inScheme "biomedical", "genetic variation", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:cam-kp a schema1:KnowledgeGraph ; rdfs:label "CAM-KP (Causal Activity Models Knowledge Provider)" ; dcterms:created "2025-12-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "CAM-KP (Causal Activity Models Knowledge Provider) is a web service knowledge graph that integrates causal biological and chemical models from Gene Ontology, Reactome, and Comparative Toxicogenomics Database (CTD) into a unified, semantically rich platform. It provides access to structured biomedical knowledge through SPARQL and TRAPI-compliant REST APIs, supporting hypothesis generation, drug discovery, and environmental health research." ; dcterms:identifier "cam-kp" ; dcterms:isReferencedBy , , ; dcterms:license ; dcterms:modified "2026-06-27T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:ars.api, kgr:ars.portal, kgr:automat.camkp, kgr:cam-kp.api, kgr:cam-kp.automat, kgr:cam-kp.ctd-interactions, kgr:cam-kp.documentation, kgr:cam-kp.go-cams, kgr:cam-kp.reactome-cams, kgr:cam-kp.sparql, kgr:cqs.code ; schema1:identifier "cam-kp" ; schema1:name "CAM-KP (Causal Activity Models Knowledge Provider)" ; doap:repository ; skos:inScheme "biomedical", "pathways" ; adms:status "Inactive" ; foaf:homepage ; foaf:maker kgr:renci . kgr:campbell-biology a schema1:DataSource ; rdfs:label "Campbell Biology" ; dcterms:created "2026-07-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Campbell Biology (by Reece, Urry, Cain, Wasserman, Minorsky, and Jackson; published by Pearson) is a widely used undergraduate introductory biology textbook. It is the source text encoded by SRI International's AURA / Project Halo effort to produce the KB Bio 101 knowledge base." ; dcterms:identifier "campbell-biology" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:bio101.exported-kb, kgr:campbell-biology.openlibrary ; schema1:name "Campbell Biology" ; skos:inScheme "biological systems", "literature" ; adms:status "Active" ; foaf:homepage . kgr:cancer-genome-interpreter a schema1:DataSource ; rdfs:label "Cancer Genome Interpreter" ; dcterms:created "2025-08-12T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Cancer Genome Interpreter (CGI) is a resource that annotates tumor genomic alterations to identify likely oncogenic events and interpret their potential therapeutic, prognostic, and diagnostic relevance using curated knowledge bases, machine learning (BoostDM, OncodriveMUT), and clinical evidence levels." ; dcterms:identifier "cancer-genome-interpreter" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:cancer-genome-interpreter.api, kgr:cancer-genome-interpreter.clinicalkg.graph, kgr:cancer-genome-interpreter.portal, kgr:clinicalkg.graph, kgr:myvariant.api ; schema1:name "Cancer Genome Interpreter" ; skos:inScheme "biomedical", "cancer", "clinical", "drug discovery", "genetic variation", "genomics", "precision medicine" ; adms:status "Active" ; foaf:homepage . kgr:cancer-registry-kg a schema1:KnowledgeGraph ; rdfs:label "Cancer Registry Knowledge Graph" ; dcterms:created "2025-11-22T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A semantic web-based knowledge graph integrating cancer registry data from multiple U.S. state registries with external datasets to enable advanced analytics, complex queries, hypothesis generation, and visualization for cancer surveillance and research" ; dcterms:identifier "cancer-registry-kg" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:cancer-registry-kg.api, kgr:cancer-registry-kg.cdi, kgr:cancer-registry-kg.kcr, kgr:cancer-registry-kg.ltr, kgr:cancer-registry-kg.visualization ; schema1:name "Cancer Registry Knowledge Graph" ; skos:altLabel "Cancer Registry KG", "Cancer Registry Knowledge Graph" ; skos:inScheme "biomedical", "cancer", "clinical", "disease registries", "public health" ; adms:status "Active" ; foaf:homepage . kgr:canvas a schema1:DataSource ; rdfs:label "CanVAS" ; dcterms:created "2026-08-12T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A harmonized and imputed canine variant atlas, unifying genotypes from fifteen previously incomparable dog cohorts into a single set of 9.67 million variants on the CanFam4 reference assembly." ; dcterms:hasVersion "v1" ; dcterms:identifier "canvas" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:canvas.backbone, kgr:canvas.imputed, kgr:canvas.metadata, kgr:sniff.atlas-vcf ; schema1:name "CanVAS" ; doap:repository ; skos:inScheme "domestic animals", "genetic variation", "genomics", "organisms", "population genetics" ; adms:status "Active" ; foaf:homepage . kgr:cardiokg a schema1:KnowledgeGraph ; rdfs:label "CardioKG" ; dcterms:created "2026-06-12T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "CardioKG is a multimodal cardiovascular disease knowledge graph that integrates computer vision-derived cardiovascular phenotypes from biomedical imaging with biomedical database content to model gene, disease, phenotype, pathway, and drug relationships for gene-disease prediction, druggability assessment, and drug repurposing." ; dcterms:identifier "cardiokg" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:cardiokg.data, kgr:cardiokg.embeddings, kgr:cardiokg.neo4j, kgr:cardiokg.workflow, kgr:cardiokg.zenodo-archive ; schema1:name "CardioKG" ; skos:inScheme "biomedical", "cardiovascular disease", "clinical", "medical imaging", "precision medicine" ; adms:status "Active" ; foaf:homepage . kgr:cargo a schema1:DataSource ; rdfs:label "crates.io (Cargo)" ; dcterms:created "2026-07-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "crates.io is the official package registry for the Rust ecosystem, hosting metadata and distributable artifacts (crates) for Rust libraries." ; dcterms:identifier "cargo" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cargo.website, kgr:securechainkg.graph ; schema1:name "crates.io (Cargo)" ; skos:inScheme "information technology", "software" ; adms:status "Active" ; foaf:homepage . kgr:caro a schema1:Ontology ; rdfs:label "Common Anatomy Reference Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An upper level ontology to facilitate interoperability between existing anatomy ontologies for different species" ; dcterms:identifier "caro" ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:caro.kg-bioportal, kgr:caro.owl ; schema1:name "Common Anatomy Reference Ontology" ; doap:repository ; skos:inScheme "anatomy and development" ; adms:status "Inactive" ; foaf:homepage . kgr:catalogue-of-life a schema1:KnowledgeGraph ; rdfs:label "Catalogue of Life" ; dcterms:created "2025-12-20T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Catalogue of Life is the most comprehensive global taxonomic resource providing an authoritative checklist of all known species on Earth. It aggregates 2.2+ million living species and 153,000 extinct species from 165 peer-reviewed taxonomic databases representing 500+ expert taxonomists. It serves as the foundational taxonomic backbone for biodiversity research, conservation policy, and species identification worldwide, with both static annual releases and dynamic monthly updates." ; dcterms:identifier "catalogue-of-life" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:catalogue-of-life.annual-releases, kgr:catalogue-of-life.api, kgr:catalogue-of-life.checklistbank, kgr:catalogue-of-life.documentation, kgr:catalogue-of-life.downloads, kgr:catalogue-of-life.web, kgr:mangal.api, kgr:mangal.docs, kgr:mangal.portal, kgr:mangal.rmangal ; schema1:identifier "catalogue-of-life" ; schema1:name "Catalogue of Life" ; doap:repository ; skos:altLabel "Catalogue of Life", "Catalogue of Life Checklist", "CoL", "Species 2000/ITIS" ; skos:inScheme "biodiversity", "organisms", "taxonomy" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:gbif, kgr:inhs, kgr:naturalis . kgr:ccf a schema1:Ontology ; rdfs:label "Common Coordinate Framework Ontology" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Common Coordinate Framework (CCF) Ontology is the spatial and semantic framework that underpins the Human Reference Atlas (HRA) developed within the NIH Human BioMolecular Atlas Program (HuBMAP). It encodes the relationships among anatomical structures, cell types, and biomarkers captured in the ASCT+B (Anatomical Structures, Cell Types, plus Biomarkers) tables, linking them to established ontologies such as Uberon, FMA, and Cell Ontology. The CCF also provides a spatial component that supports 3D spatial registration of tissue samples to reference organs via the CCF Registration User Interface, giving each sample a defined location in a common coordinate system. Together these clinical, semantic, and spatial layers serve as a primary upstream source for the HRA Knowledge Graph (HRA-KG)." ; dcterms:identifier "ccf" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ccf.kg-bioportal, kgr:ccf.owl, kgr:hra-kg.graph.json, kgr:hra-kg.graph.nq, kgr:hra-kg.graph.nt, kgr:hra-kg.graph.ttl, kgr:hra-kg.graph.xml ; schema1:name "Common Coordinate Framework Ontology" ; skos:inScheme "anatomy and development", "biomedical" ; adms:status "Active" ; foaf:homepage . kgr:ccle a schema1:DataSource ; rdfs:label "CCLE" ; dcterms:created "2025-03-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "CCLE is the Cancer Cell Line Encyclopedia, a collaboration between the Broad Institute and the Novartis Institutes for Biomedical Research." ; dcterms:identifier "ccle" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:bioteque.embeddings, kgr:ccle.datasets, kgr:ccle.docs, kgr:cellminer.cellminercdb, kgr:cellmodelpassports.model_list, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:indra.cogex.code, kgr:obo-db-ingest.ccle.json, kgr:obo-db-ingest.ccle.obo, kgr:obo-db-ingest.ccle.owl, kgr:obo-db-ingest.ccle.sssom.tsv, kgr:obo-db-ingest.ccle.tsv, kgr:pharmacodb.api, kgr:pharmacodb.documentation, kgr:pharmacodb.portal ; schema1:name "CCLE" ; skos:inScheme "biomedical", "cancer" ; adms:status "Active" ; foaf:homepage . kgr:ccre a schema1:DataSource ; rdfs:label "ENCODE cCRE Registry (SCREEN)" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The ENCODE Registry of candidate cis-Regulatory Elements (cCREs) is a curated annotation of regulatory regions in the human and mouse genomes derived from ENCODE and Roadmap Epigenomics data. Each cCRE is classified by its biochemical signature, including promoter-like, enhancer-like, and CTCF-bound elements based on DNase hypersensitivity, H3K4me3, H3K27ac, and CTCF ChIP-seq signals. The registry is explorable through the SCREEN (Search Candidate cis-Regulatory Elements by ENCODE) web portal, which lets users browse cCREs and their activity across cell types and tissues. cCREs/SCREEN are produced as part of the ENCODE project and serve as an upstream source for downstream resources such as GenomicKB." ; dcterms:identifier "ccre" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ccre.screen, kgr:genomickb.graph ; schema1:name "ENCODE cCRE Registry (SCREEN)" ; skos:inScheme "epigenomics", "gene regulation", "genomics", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:cdao a schema1:Ontology ; rdfs:label "Comparative Data Analysis Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "a formalization of concepts and relations relevant to evolutionary comparative analysis" ; dcterms:identifier "cdao" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cdao.kg-bioportal, kgr:cdao.owl ; schema1:name "Comparative Data Analysis Ontology" ; doap:repository ; skos:inScheme "genomics", "molecular evolution", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:cdc-places a schema1:DataSource ; rdfs:label "CDC PLACES" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "CDC PLACES (Population Level Analysis and Community Estimates) provides model-based small-area estimates of chronic disease risk factors, health outcomes, prevention practices, and health status measures for the United States. Estimates are produced at the county, place, census tract, and ZIP Code Tabulation Area levels, allowing local health departments and planners to assess and compare community health where direct survey data are sparse. The project is a collaboration between the CDC, the Robert Wood Johnson Foundation, and the CDC Foundation. CDC PLACES is an upstream source for KnowWhereGraph." ; dcterms:identifier "cdc-places" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cdc-places.datasets, kgr:cdc-places.portal, kgr:knowwheregraph.graph ; schema1:name "CDC PLACES" ; skos:inScheme "clinical", "epidemiology", "phenotype", "public health" ; adms:status "Active" ; foaf:homepage . kgr:cdc-svi a schema1:DataSource ; rdfs:label "CDC/ATSDR Social Vulnerability Index" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The CDC/ATSDR Social Vulnerability Index (SVI) measures the relative social vulnerability of U.S. communities to disasters and public-health emergencies at the census-tract and county level. It combines 16 U.S. Census variables, grouped into four themes (socioeconomic status, household characteristics, racial and ethnic minority status, and housing type and transportation), into ranked vulnerability scores. Maintained by the CDC and the Agency for Toxic Substances and Disease Registry (ATSDR) through their Geospatial Research, Analysis, and Services Program (GRASP), the SVI helps public-health officials and emergency planners prepare for and respond to hazardous events. It serves as an upstream source for the KnowWhereGraph." ; dcterms:identifier "cdc-svi" ; dcterms:license "U.S. federal government public domain" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cdc-svi.data, kgr:cdc-svi.map, kgr:knowwheregraph.graph ; schema1:name "CDC/ATSDR Social Vulnerability Index" ; skos:inScheme "disasters", "environment", "public health", "social determinants of health" ; adms:status "Active" ; foaf:homepage . kgr:cdd a schema1:DataSource ; rdfs:label "Conserved Domain Database" ; dcterms:created "2026-06-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Conserved Domain Database (CDD) is a resource for the annotation of functional units in proteins. It provides a collection of well-annotated multiple sequence alignment models for ancient domains and full-length proteins, available as position-specific score matrices for fast identification of conserved domains in protein sequences." ; dcterms:identifier "cdd" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cdd.cdsearch, kgr:cdd.downloads, kgr:cdd.site, kgr:genecards.web.interface ; schema1:name "Conserved Domain Database" ; skos:inScheme "genomics", "protein domains", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:cdiscvocab a schema1:Aggregator ; rdfs:label "CDISC Controlled Terminology" ; dcterms:created "2025-11-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "CDISC Controlled Terminology provides standardized codelists and valid values for clinical research data collection, tabulation, analysis, and submission to regulatory agencies including FDA and PMDA. Maintained as part of NCI Thesaurus and distributed by NCI EVS in multiple formats." ; dcterms:identifier "cdiscvocab" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:athena.mappings, kgr:athena.vocabularies, kgr:cdiscvocab.adam, kgr:cdiscvocab.browser, kgr:cdiscvocab.cdash, kgr:cdiscvocab.ddf, kgr:cdiscvocab.definexml, kgr:cdiscvocab.glossary, kgr:cdiscvocab.mrct, kgr:cdiscvocab.protocol, kgr:cdiscvocab.sdtm, kgr:cdiscvocab.send, kgr:cdiscvocab.tmf ; schema1:name "CDISC Controlled Terminology" ; skos:altLabel "CDISC CT", "CDISC Controlled Terminology" ; skos:inScheme "biomedical", "clinical", "clinical coding", "clinical trials", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:cdno a schema1:Ontology ; rdfs:label "Compositional Dietary Nutrition Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "CDNO provides structured terminologies to describe nutritional attributes of material entities that contribute to human diet." ; dcterms:identifier "cdno" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cdno.kg-bioportal, kgr:cdno.obo, kgr:cdno.owl ; schema1:name "Compositional Dietary Nutrition Ontology" ; doap:repository ; skos:inScheme "chemistry and biochemistry", "food", "nutrition" ; adms:status "Active" ; foaf:homepage . kgr:cebs a schema1:DataSource ; rdfs:label "CEBS" ; dcterms:created "2025-11-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Chemical Effects in Biological Systems (CEBS) is a public, web-accessible, manually curated repository of toxicology study data from the National Toxicology Program (NTP) and other research programs. CEBS contains individual-level and summarized study data from carcinogenicity studies, short-term toxicity studies, genetic toxicity assays, and other toxicological investigations. The database integrates chemical structure information, study designs, experimental conditions, and biological effects to support toxicology research and risk assessment." ; dcterms:identifier "cebs" ; dcterms:isReferencedBy , ; dcterms:modified "2026-06-01T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:automat.cebs, kgr:cebs.api, kgr:cebs.citation-guide, kgr:cebs.data, kgr:cebs.web ; schema1:identifier "cebs" ; schema1:name "CEBS" ; skos:altLabel "CEBS", "Chemical Effects in Biological Systems" ; skos:inScheme "biomedical", "public health", "toxicology" ; adms:status "Active" ; foaf:homepage . kgr:cellcollective a schema1:DataSource ; rdfs:label "Cell Collective" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Cell Collective is a web platform for building, simulating and sharing interactive logical (Boolean) models of biological networks, with a public library of curated published models. It comes from the Helikar lab at the University of Nebraska-Lincoln and runs separate research, teaching and learning environments. Models can be exported as SBML-qual, Boolean expressions, truth tables, GML and interaction matrices. OmicsDI indexes 241 Cell Collective models (checked 2026-10-04)." ; dcterms:identifier "cellcollective" ; dcterms:isReferencedBy ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cellcollective.learn, kgr:cellcollective.portal, kgr:cellcollective.research, kgr:omicsdi.api, kgr:omicsdi.portal ; schema1:name "Cell Collective" ; skos:altLabel "CellCollective" ; skos:inScheme "biological systems", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:cellmarker a schema1:DataSource ; rdfs:label "CellMarker" ; dcterms:created "2025-07-20T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "CellMarker is a comprehensive and accurate resource of cell markers for various cell types in tissues of human and mouse. CellMarker 2.0 provides a manually curated collection of 26,915 markers across 2,578 cell types and 656 tissues, resulting in 83,361 tissue-cell type-marker entries, and includes integrated web tools for single-cell data analysis." ; dcterms:identifier "cellmarker" ; dcterms:isReferencedBy , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , ; schema1:hasPart kgr:cellmarker.act, kgr:cellmarker.all, kgr:cellmarker.human, kgr:cellmarker.mouse, kgr:cellmarker.singlecell, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:indra.cogex.code, kgr:multiomics-kp.graph, kgr:mygene.api ; schema1:identifier "cellmarker" ; schema1:name "CellMarker" ; skos:inScheme "biological systems", "biomedical", "cell biology", "genomics", "single-cell analysis" ; adms:status "Active" ; foaf:homepage . kgr:cellminer a schema1:DataSource ; rdfs:label "CellMiner" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "CellMiner is a web-based suite from the Genomics and Pharmacology Facility of the NCI Developmental Therapeutics Branch for exploring molecular profiles and drug activity data of the NCI-60 cancer cell line panel. It integrates DNA (copy number, mutation, methylation), RNA (microarray, RNA-seq, microRNA), protein and compound activity data (DTP NCI-60 screen, HTS384 screen and NCI-ALMANAC combination scores), and provides processed and raw data downloads. Its companion application CellMinerCDB extends cross-database analysis to other cancer cell line pharmacogenomic datasets, including CCLE, GDSC, CTRP, PRISM and Project Achilles." ; dcterms:identifier "cellminer" ; dcterms:isReferencedBy , , ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:cellminer.cellminercdb, kgr:cellminer.dataset-metadata, kgr:cellminer.downloads, kgr:cellminer.drug-raw, kgr:cellminer.drug-zscore, kgr:cellminer.portal, kgr:cellminer.rcellminer, kgr:cellminer.rcellminerdata, kgr:cellminer.release-notes ; schema1:name "CellMiner" ; skos:altLabel "CellMiner NCI-60", "CellMinerCDB" ; skos:inScheme "biomedical", "cancer", "genomics", "pharmacogenomics", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:cellml a schema1:DataModel ; rdfs:label "CellML" ; dcterms:created "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "CellML is an open XML-based language for describing and exchanging mathematical models of biological processes, such as cellular electrophysiology, signaling and metabolism. Models are built from reusable components containing variables, units and equations written in MathML, connected through variable mappings and able to import other models. The standard has three versioned specifications (1.0, 1.1 and 2.0), developed at the Auckland Bioengineering Institute and governed since May 2026 by the CellML Specification Custodian Board. The libCellML library provides a reference implementation for reading, validating, analysing and generating code from CellML 2.0 models." ; dcterms:identifier "cellml" ; dcterms:isReferencedBy , , , ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cellml.dtd-1.0, kgr:cellml.dtd-1.1, kgr:cellml.libcellml, kgr:cellml.libcellml-docs, kgr:cellml.spec-1.0, kgr:cellml.spec-1.1, kgr:cellml.spec-2.0, kgr:cellml.spec-2.0-informative, kgr:cellml.specifications, kgr:physiome-model-repository.exposures, kgr:physiome-model-repository.workspaces ; schema1:name "CellML" ; doap:repository ; skos:inScheme "biological systems", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:cellmodelpassports a schema1:DataSource ; rdfs:label "Cell Model Passports" ; dcterms:created "2026-10-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Cell Model Passports is a curated database of preclinical cancer models, including cell lines and organoids, run by the Wellcome Sanger Institute as part of the Cancer Dependency Map at Sanger. For each model it holds relationships to other models, patient and clinical annotation, and genomic and functional datasets including mutations, copy number, RNA-seq expression, methylation, proteomics, CRISPR knockout screens, drug response, gene fusions and growth rates." ; dcterms:identifier "cellmodelpassports" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-03T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cellmodelpassports.api, kgr:cellmodelpassports.crispr_fitness_scores, kgr:cellmodelpassports.downloads, kgr:cellmodelpassports.gdsc2_dose_response, kgr:cellmodelpassports.gene_identifiers, kgr:cellmodelpassports.model_list, kgr:cellmodelpassports.mutations_all, kgr:cellmodelpassports.portal, kgr:cellmodelpassports.proteomics, kgr:cellmodelpassports.rnaseq_merged ; schema1:name "Cell Model Passports" ; skos:altLabel "CMP" ; skos:inScheme "biomedical", "cancer", "gene expression profiling", "genomics", "pharmacology", "precision medicine" ; adms:status "Active" ; foaf:homepage . kgr:cellosaurus a schema1:DataSource ; rdfs:label "Cellosaurus" ; dcterms:created "2025-05-07T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Cellosaurus is a knowledge resource on cell lines providing information on cell lines from vertebrates, invertebrates, and plants, including standardized nomenclature, cross-references to other databases, and information on problematic cell lines." ; dcterms:identifier "cellosaurus" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:bioregistry.registry.json, kgr:bioregistry.sssom, kgr:bioteque.embeddings, kgr:cellmodelpassports.model_list, kgr:cellosaurus.api.rest, kgr:cellosaurus.api.sparql, kgr:cellosaurus.clastr, kgr:cellosaurus.site, kgr:cellosaurus.txt, kgr:cellosaurus.xml, kgr:cellosaurus.xrefs, kgr:europepmc.textmined-terms, kgr:rdf-portal.sparql.sib ; schema1:name "Cellosaurus" ; doap:repository ; skos:inScheme "biological systems", "biomedical", "cell biology" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:sib . kgr:cellphonedb a schema1:DataSource ; rdfs:label "CellPhoneDB" ; dcterms:created "2026-06-15T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "CellPhoneDB is a publicly available repository of manually curated human receptors, ligands and their interactions, paired with a statistical tool to infer cell-cell communication from single-cell transcriptomics data. It accounts for the subunit architecture of both ligands and receptors, accurately representing heteromeric complexes, and predicts enriched signaling between cell types based on the combined expression of interacting partners." ; dcterms:identifier "cellphonedb" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:cellphonedb.database, kgr:cellphonedb.docs, kgr:cellphonedb.package, kgr:cellphonedb.web ; schema1:name "CellPhoneDB" ; doap:repository ; skos:inScheme "biological systems", "immunology", "single-cell analysis", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:cellxgene a schema1:DataSource ; rdfs:label "CZ CELLxGENE" ; dcterms:created "2026-05-28T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "CZ CELLxGENE is a platform for finding, downloading, exploring, and analyzing single-cell datasets through a public data portal, integrated analysis interfaces, and the CELLxGENE Census programmatic access layer." ; dcterms:identifier "cellxgene" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:cellxgene.census, kgr:cellxgene.datasets, kgr:cellxgene.docs, kgr:cellxgene.portal, kgr:cl-kg.api.neo4j, kgr:nlm-ckn.graph ; schema1:name "CZ CELLxGENE" ; doap:repository ; skos:inScheme "biological systems", "biomedical", "gene expression profiling", "genomics", "single-cell analysis" ; adms:status "Active" ; foaf:homepage . kgr:ceph a schema1:Ontology ; rdfs:label "Cephalopod Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An anatomical and developmental ontology for cephalopods" ; dcterms:identifier "ceph" ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:ceph.kg-bioportal, kgr:ceph.obo, kgr:ceph.owl ; schema1:name "Cephalopod Ontology" ; doap:repository ; skos:inScheme "anatomy and development" ; adms:status "Inactive" ; foaf:homepage . kgr:cfde-ddkg a schema1:KnowledgeGraph ; rdfs:label "Data Distillery Knowledge Graph (DDKG)" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Common Fund Data Ecosystem (CFDE) aims to facilitate better integration, and reuse of Common Fund data to accelerate discoveries in biomedical research.The Data Distillery project aims to integrate summarized (“distilled”) Common Fund data within a knowledge graph. The purpose of the Data Distillery Knowledge Graph (DDKG) is to link multiple sources of expertly curated data, thus providing data integration across multiple Common Fund data coordinating centers (DCCs)." ; dcterms:identifier "cfde-ddkg" ; dcterms:license ; dcterms:modified "2026-05-27T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cfde-ddkg.downloads, kgr:cfde-ddkg.portal ; schema1:name "Data Distillery Knowledge Graph (DDKG)" ; doap:repository ; skos:inScheme "biomedical" ; adms:status "Active" ; foaf:homepage . kgr:cfde-gse a schema1:KnowledgeGraph ; rdfs:label "Common Fund Data Ecosystem Gene Set Enrichment (CFDE-GSE)" ; dcterms:created "2025-09-23T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Common Fund Data Ecosystem Gene Set Enrichment (CFDE-GSE) is a knowledge graph that integrates gene set collections from multiple Common Fund programs to enable cross-program gene set enrichment analysis, functional annotation, and systems-level understanding of biological processes across diverse biomedical research domains." ; dcterms:identifier "cfde-gse" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cfde-gse.api, kgr:cfde-gse.connection-explorer, kgr:cfde-gse.edges-csv, kgr:cfde-gse.genesets, kgr:cfde-gse.graph, kgr:cfde-gse.nodes-csv, kgr:cfde-gse.portal ; schema1:name "Common Fund Data Ecosystem Gene Set Enrichment (CFDE-GSE)" ; doap:repository ; skos:inScheme "biomedical", "genomics", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:cgc a schema1:DataSource ; rdfs:label "Caenorhabditis Genetics Center" ; dcterms:created "2026-10-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Caenorhabditis Genetics Center (CGC) collects, maintains and distributes genetic stocks (strains) of the nematode Caenorhabditis elegans and related species, aiming to hold a null mutation for every C. elegans gene along with strains that serve as genetic and molecular tools, such as chromosome rearrangements, endogenously tagged loci and expression tools. Each strain record gives the genotype, description, mutagen, outcrossing and provenance. The CGC is based at the University of Minnesota and funded by the NIH Office of Research Infrastructure Programs." ; dcterms:identifier "cgc" ; dcterms:isReferencedBy ; dcterms:modified "2026-10-03T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:cgc.strain-list, kgr:cgc.strain-search ; schema1:name "Caenorhabditis Genetics Center" ; skos:altLabel "CGC" ; skos:inScheme "genetic variation", "genomics", "model organisms", "organisms", "phenotype" ; adms:status "Active" ; foaf:homepage . kgr:cgnc a schema1:DataSource ; rdfs:label "CGNC" ; dcterms:created "2025-03-24T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "CGNC is the Chicken Gene Nomenclature Consortium. It is an international group of researchers interested in providing standardized gene nomenclature for chicken genes." ; dcterms:identifier "cgnc" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cgnc.genes, kgr:cgnc.portal, kgr:obo-db-ingest.cgnc.json, kgr:obo-db-ingest.cgnc.obo, kgr:obo-db-ingest.cgnc.owl, kgr:obo-db-ingest.cgnc.sssom.tsv, kgr:obo-db-ingest.cgnc.tsv ; schema1:name "CGNC" ; skos:inScheme "domestic animals", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:chea a schema1:DataSource ; rdfs:label "ChEA" ; dcterms:created "2026-05-21T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ChEA is a family of transcription factor enrichment resources developed by the Ma'ayan Lab, spanning the original ChIP Enrichment Analysis database and later ChEA2 and ChEA3 releases that assemble transcription factor target gene sets from ChIP-X experiments and other orthogonal omics data." ; dcterms:identifier "chea" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:chea-kg.api, kgr:chea-kg.graph, kgr:chea-kg.libraries, kgr:chea-kg.portal, kgr:chea.api, kgr:chea.docker, kgr:chea.libraries, kgr:chea.portal, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j ; schema1:name "ChEA" ; doap:repository ; skos:inScheme "biomedical", "gene regulation", "genomics", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:chea-kg a schema1:KnowledgeGraph ; rdfs:label "ChEA-KG" ; dcterms:created "2025-09-23T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ChEA-KG is a Ma'ayan Lab transcription factor knowledge graph and web resource associated with the ChEA3 platform, integrating transcription factor target gene libraries, coexpression networks, benchmarking datasets, and interactive query results for transcription factor enrichment analysis." ; dcterms:identifier "chea-kg" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:chea-kg.api, kgr:chea-kg.graph, kgr:chea-kg.libraries, kgr:chea-kg.portal ; schema1:name "ChEA-KG" ; doap:repository ; skos:inScheme "biomedical", "gene regulation", "genomics", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:chebi a schema1:Ontology ; rdfs:label "Chemical Entities of Biological Interest" ; dcterms:created "2025-03-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A structured classification of molecular entities of biological interest focusing on 'small' chemical compounds." ; dcterms:identifier "chebi" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:automat.robokopkg, kgr:babel.compendia, kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:bioteque.embeddings, kgr:chebi.chebi_core.obo, kgr:chebi.chebi_lite.obo, kgr:chebi.json, kgr:chebi.obo, kgr:chebi.owl, kgr:chebi.owl.gz, kgr:drug-approvals-kp.graph.edges, kgr:drug-approvals-kp.graph.nodes, kgr:drugmechdb.graph, kgr:ecso.owl, kgr:efo.obo, kgr:efo.owl, kgr:europepmc.textmined-terms, kgr:foodb.data.csv, kgr:foodb.data.json, kgr:foodb.data.mysql, kgr:foodb.data.xml, kgr:foodb.web, kgr:forum.api, kgr:forum.graph.dump, kgr:forum.void, kgr:forum.webapp, kgr:genecards.web.interface, kgr:ibkh.graph, kgr:icees-kg.graph, kgr:icees-kg.metadata, kgr:icees-kg.trapi, kgr:kg-alzheimers.graph, kgr:kg-covid-19.graph, kgr:kg-idg.graph, kgr:kg-microbe.graph.biomedical, kgr:kg-microbe.graph.biomedical-function, kgr:kg-microbe.graph.core, kgr:kg-microbe.graph.function, kgr:kg-microbe.graph.raw, kgr:mechreponet.kg, kgr:mediadive.portal, kgr:mediadive.rest_api, kgr:mediadive.sparql, kgr:medkg.site, kgr:metabokg.graph, kgr:metabokg.schema, kgr:metabolights.metabolites, kgr:metabolights.study-metabolites, kgr:microbiomekg.api, kgr:molepro.api, kgr:molepro.catalog, kgr:molepro.graph.edges, kgr:molepro.graph.nodes, kgr:molepro.trapi, kgr:mychem.api, kgr:ncatsgardkg.graph, kgr:np-kg.graph.networkx, kgr:np-kg.graph.tsv, kgr:obo-db-ingest.bigg.metabolite.sssom.tsv, kgr:orkg.dump, kgr:pathwaycommons.biopax, kgr:pathwaycommons.downloads, kgr:pathwaycommons.gmt, kgr:pathwaycommons.sif, kgr:pathwaycommons.txt, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:pheknowlator.graph, kgr:pubchem.substances.asn, kgr:pubchem.substances.sdf, kgr:rdf-portal.graphql, kgr:rdf-portal.sparql.ebi, kgr:rna-kg.kg.edges, kgr:rna-kg.kg.neo4j, kgr:rna-kg.kg.nodes, kgr:rtx-kg2.graph.edges, kgr:rtx-kg2.graph.nodes, kgr:rtx-kg2.neo4j, kgr:service-kp.trapi, kgr:skm.ckn.v1.annotations, kgr:skm.ckn.v1.graph, kgr:skm.ckn.v2.annotations, kgr:skm.ckn.v2.graph, kgr:skm.pss.live.boolnet.annotations, kgr:skm.pss.live.boolnet.graph, kgr:skm.pss.live.dot, kgr:skm.pss.live.sbgn, kgr:skm.pss.live.sbml, kgr:skm.pss.live.sif.dinar.graph, kgr:skm.pss.live.sif.original.annotations, kgr:skm.pss.live.sif.original.graph, kgr:skm.pss.live.sif.projection.annotations, kgr:skm.pss.live.sif.projection.graph, kgr:sri-reference-kg.graph, kgr:suppkg.source-data, kgr:tera.cas-to-mesh-csv, kgr:ubkg.csv, kgr:ubkg.neo4j, kgr:unibiomap.auxs, kgr:unibiomap.compound_desc, kgr:unibiomap.links, kgr:unibiomap.pred, kgr:unibiomap.pred.full ; schema1:identifier "chebi" ; schema1:name "Chemical Entities of Biological Interest" ; doap:repository ; skos:inScheme "chemistry and biochemistry" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ebi . kgr:chembank a schema1:DataSource ; rdfs:label "ChemBank" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ChemBank was a public, freely available collection of small-molecule screening data and cheminformatics resources developed by the Chemical Biology Program (formerly the Initiative for Chemical Genetics) at the Broad Institute. It assembled biological activity measurements from high-throughput screens together with chemical structures, compound annotations, and analysis tools, with the aim of helping researchers relate small molecules to their effects on biological systems. ChemBank is no longer maintained: its homepage at chembank.broadinstitute.org is defunct and now redirects away from the original database. It served as an upstream primary source for the Molecular Data Provider (MolePro) knowledge provider." ; dcterms:identifier "chembank" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:chembank.publication, kgr:chembank.wayback, kgr:molepro.api, kgr:molepro.catalog, kgr:molepro.graph.edges, kgr:molepro.graph.nodes, kgr:molepro.trapi ; schema1:identifier "chembank" ; schema1:name "ChemBank" ; skos:inScheme "chemistry and biochemistry", "drug discovery", "high-throughput screening", "pharmacology" ; adms:status "Inactive" ; foaf:homepage . kgr:chembl a schema1:DataSource ; rdfs:label "ChEMBL" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ChEMBL is a manually curated database of bioactive molecules with drug-like properties. It brings together chemical, bioactivity and genomic data to aid the translation of genomic information into effective new drugs." ; dcterms:identifier "chembl" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , ; schema1:hasPart kgr:babel.compendia, kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:chembl.api, kgr:chembl.map_to_uniprot, kgr:chembl.mysql, kgr:chembl.postgres, kgr:chembl.rdf, kgr:chembl.sdf, kgr:chembl.site, kgr:chembl.sparql, kgr:chembl.sqlite, kgr:genecards.web.interface, kgr:gpcrdb.api, kgr:gpcrdb.data, kgr:gpcrdb.portal, kgr:ibkh.graph, kgr:icees-kg.graph, kgr:icees-kg.metadata, kgr:icees-kg.trapi, kgr:indra.cogex.code, kgr:kg-covid-19.graph, kgr:kg-enp.graph, kgr:klocd.portal, kgr:micromap.api, kgr:molepro.api, kgr:molepro.catalog, kgr:molepro.graph.edges, kgr:molepro.graph.nodes, kgr:molepro.trapi, kgr:mps-db.portal, kgr:mychem.api, kgr:mygene.api, kgr:ncatsgardkg.graph, kgr:obo-db-ingest.chembl.compound.json, kgr:obo-db-ingest.chembl.compound.obo, kgr:obo-db-ingest.chembl.compound.owl, kgr:obo-db-ingest.chembl.compound.sssom.tsv, kgr:obo-db-ingest.chembl.compound.tsv, kgr:obo-db-ingest.chembl.target.json, kgr:obo-db-ingest.chembl.target.obo, kgr:obo-db-ingest.chembl.target.owl, kgr:obo-db-ingest.chembl.target.sssom.tsv, kgr:obo-db-ingest.chembl.target.tsv, kgr:open-tggates.histopathology-images, kgr:pharmdb.graph, kgr:pubchem.substances.asn, kgr:pubchem.substances.sdf, kgr:rdf-portal.graphql, kgr:rdf-portal.sparql.ebi, kgr:rtx-kg2.graph.edges, kgr:rtx-kg2.graph.nodes, kgr:rtx-kg2.neo4j, kgr:service-kp.trapi, kgr:spoke-okn.graph, kgr:spoke.graph, kgr:stitch.api, kgr:stitch.downloads, kgr:stitch.portal, kgr:sugi-atlas.portal, kgr:tcrd.api, kgr:tcrd.database_download, kgr:tcrd.documentation, kgr:translator.chembl.graph, kgr:translator.translator_kg.graph, kgr:unibiomap.auxs, kgr:unibiomap.links, kgr:unibiomap.pred, kgr:unibiomap.pred.full ; schema1:identifier "chembl" ; schema1:name "ChEMBL" ; doap:repository ; skos:inScheme "chemistry and biochemistry", "drug discovery", "pharmacology" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ebi . kgr:chemicalchecker a schema1:DataSource ; rdfs:label "Chemical Checker" ; dcterms:created "2025-07-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Chemical Checker (CC) is a data-driven resource of small molecule bioactivity data, organized into five levels of increasing complexity, ranging from chemical properties to clinical outcomes. It is designed to support computational drug discovery tasks." ; dcterms:identifier "chemicalchecker" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:bioteque.embeddings, kgr:chemicalchecker.api, kgr:chemicalchecker.portal, kgr:chemicalchecker.signatures, kgr:chemicalchecker.signaturizer ; schema1:name "Chemical Checker" ; doap:repository ; skos:inScheme "cheminformatics", "chemistry and biochemistry", "drug discovery", "information technology", "machine learning" ; adms:status "Active" ; foaf:homepage . kgr:chemid a schema1:DataSource ; rdfs:label "ChemIDplus" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ChemIDplus was a National Library of Medicine chemical identification resource for chemical names, synonyms, structures, and substance identifiers; its content is now available through PubChem." ; dcterms:identifier "chemid" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:chemid.pubchem-guide, kgr:chemid.pubchem-source, kgr:dsstoxdb.downloads ; schema1:name "ChemIDplus" ; skos:altLabel "ChemIDplus", "Chemical Identification Plus" ; skos:inScheme "chemistry and biochemistry", "environment" ; adms:status "Inactive" ; foaf:homepage . kgr:cheminf a schema1:Ontology ; rdfs:label "Chemical Information Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Includes terms for the descriptors commonly used in cheminformatics software applications and the algorithms which generate them." ; dcterms:identifier "cheminf" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cheminf.kg-bioportal, kgr:cheminf.owl, kgr:forum.graph.dump ; schema1:name "Chemical Information Ontology" ; doap:repository ; skos:inScheme "cheminformatics", "chemistry and biochemistry" ; adms:status "Active" ; foaf:homepage . kgr:chemont a schema1:Ontology ; rdfs:label "ChemOnt" ; dcterms:created "2025-12-11T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ChemOnt (Chemical Ontology) is a comprehensive chemical ontology that provides a hierarchical classification of chemical entities. It is designed to support chemical informatics applications and enable semantic integration of chemical data across biomedical systems. ChemOnt is developed and maintained by the Wishart Lab and integrates chemical structures with ontological classifications." ; dcterms:identifier "chemont" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:chemont.classyfire, kgr:chemont.obo, kgr:forum.graph.dump ; schema1:name "ChemOnt" ; doap:repository ; skos:inScheme "cheminformatics", "chemistry and biochemistry" ; adms:status "Active" ; foaf:homepage . kgr:chip-atlas a schema1:DataSource ; rdfs:label "ChIP-Atlas" ; dcterms:created "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ChIP-Atlas is a data-mining suite that integrates and uniformly reprocesses nearly all public ChIP-seq, ATAC-seq, DNase-seq and Bisulfite-seq experiments deposited in the Sequence Read Archive for six model organisms (human, mouse, rat, fruit fly, nematode and budding yeast). It provides peak calls, coverage tracks, target gene predictions, colocalization analyses, enrichment analysis, differential analysis and, since version 3.0, chromosome architecture data, with manually curated antigen and cell type annotations." ; dcterms:identifier "chip-atlas" ; dcterms:isReferencedBy , , ; dcterms:license ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:about , , , , , ; schema1:hasPart kgr:chip-atlas.api, kgr:chip-atlas.colocalization, kgr:chip-atlas.docs, kgr:chip-atlas.experimentlist, kgr:chip-atlas.filelist, kgr:chip-atlas.peaks.assembled, kgr:chip-atlas.peaks.each, kgr:chip-atlas.peaks.light, kgr:chip-atlas.portal, kgr:chip-atlas.targetgenes ; schema1:name "ChIP-Atlas" ; doap:repository ; skos:inScheme "epigenomics", "gene regulation", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:chiro a schema1:Ontology ; rdfs:label "CHEBI Integrated Role Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "CHEBI provides a distinct role hierarchy. Chemicals in the structural hierarchy are connected via a 'has role' relation. CHIRO provides links from these roles to useful other classes in other ontologies. This will allow direct connection between chemical structures (small molecules, drugs) and what they do. This could be formalized using 'capable of', in the same way Uberon and the Cell Ontology link structures to processes." ; dcterms:identifier "chiro" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:chiro.kg-bioportal, kgr:chiro.obo, kgr:chiro.owl ; schema1:name "CHEBI Integrated Role Ontology" ; doap:repository ; skos:inScheme "chemistry and biochemistry" ; adms:status "Active" ; foaf:homepage . kgr:chmo a schema1:Ontology ; rdfs:label "Chemical Methods Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "CHMO, the chemical methods ontology, describes methods used to" ; dcterms:identifier "chmo" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:chmo.kg-bioportal, kgr:chmo.owl, kgr:metabokg.graph, kgr:metabokg.schema, kgr:pride-cv.obo, kgr:pride-cv.owl ; schema1:name "Chemical Methods Ontology" ; doap:repository ; skos:inScheme "biomedical", "chemistry and biochemistry" ; adms:status "Active" ; foaf:homepage . kgr:chr a schema1:Ontology ; rdfs:label "Monochrom Ontology" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Monochrom, also known as Chromo or CHR, is an automatic translation of UCSC chromosome bands to OWL classes. Each chromosome and chromosomal region is represented as an OWL class." ; dcterms:identifier "chr" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:chr.kg-bioportal, kgr:chr.model.owl ; schema1:name "Monochrom Ontology" ; doap:repository ; skos:inScheme "genomics" ; adms:status "Active" ; foaf:homepage . kgr:cido a schema1:Ontology ; rdfs:label "Coronavirus Infectious Disease Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Coronavirus Infectious Disease Ontology (CIDO) aims to ontologically represent and standardize various aspects of coronavirus infectious diseases, including their etiology, transmission, epidemiology, pathogenesis, diagnosis, prevention, and treatment." ; dcterms:identifier "cido" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cido.kg-bioportal, kgr:cido.owl ; schema1:name "Coronavirus Infectious Disease Ontology" ; doap:repository ; skos:inScheme "biomedical", "infectious disease" ; adms:status "Active" ; foaf:homepage . kgr:ciel a schema1:Aggregator ; rdfs:label "CIEL" ; dcterms:created "2025-11-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Columbia International eHealth Laboratory (CIEL) dictionary is a shared open concept dictionary that provides comprehensive terminology services to OpenMRS and other health information systems. Based at Columbia University's Department of Biomedical Informatics, CIEL contains over 55,000 medical concepts mapped to standardized code systems including ICD, SNOMED CT, LOINC, RxNorm, and many others. CIEL supports open source health initiatives globally and has been recognized as both a Digital Public Good by the Digital Public Goods Alliance and a Content Public Good by Digital Square." ; dcterms:identifier "ciel" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:athena.mappings, kgr:athena.vocabularies, kgr:ciel.covid19, kgr:ciel.dictionary, kgr:ciel.mpx, kgr:ciel.ocl ; schema1:name "CIEL" ; skos:altLabel "CIEL", "CIEL Concept Dictionary", "Columbia International eHealth Laboratory" ; skos:inScheme "biomedical", "clinical", "clinical coding", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:cio a schema1:Ontology ; rdfs:label "Confidence Information Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology to capture confidence information about annotations." ; dcterms:identifier "cio" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cio.kg-bioportal, kgr:cio.obo, kgr:cio.owl ; schema1:name "Confidence Information Ontology" ; doap:repository ; skos:inScheme "biomedical", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:circbase a schema1:Aggregator ; rdfs:label "circBase" ; dcterms:created "2025-08-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "circBase is a database and exploration portal for circular RNAs (circRNAs), aggregating published circRNA detection datasets across multiple species, tissues, and experimental conditions, and providing search, genomic context, expression summaries, and downloadable data plus scripts for circRNA discovery." ; dcterms:identifier "circbase" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:circbase.docs, kgr:circbase.downloads, kgr:circbase.portal, kgr:rna-kg.kg.edges, kgr:rna-kg.kg.neo4j, kgr:rna-kg.kg.nodes ; schema1:name "circBase" ; skos:inScheme "genomics", "non-coding RNA" ; adms:status "Active" ; foaf:homepage . kgr:cito a schema1:Ontology ; rdfs:label "CiTO" ; dcterms:created "2025-12-11T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "CiTO (Citation Typing Ontology) is a formal ontology that provides a machine-readable vocabulary for describing the nature and type of citations within bibliographic references. It enables the semantic representation of the relationships between citing and cited scholarly works, supporting the analysis of citation networks and the characterization of how one publication cites another." ; dcterms:identifier "cito" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cito.documentation, kgr:cito.ttl, kgr:forum.graph.dump ; schema1:name "CiTO" ; doap:repository ; skos:inScheme "general", "literature", "scholarly communication" ; adms:status "Active" ; foaf:homepage . kgr:civic a schema1:DataSource ; rdfs:label "CIViC" ; dcterms:created "2025-05-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Clinical Interpretation of Variants in Cancer (CIViC) knowledgebase is a free and open resource for public use that enables the interpretation of variants in cancer by providing community-curated information about the clinical significance of genomic variants." ; dcterms:identifier "civic" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:biomuta.dataset, kgr:civic.api.v1, kgr:civic.api.v2, kgr:civic.data.acceptedsubmittedvariants, kgr:civic.data.acceptedvariants, kgr:civic.data.assertions, kgr:civic.data.evidence, kgr:civic.data.features, kgr:civic.data.molecularprofile, kgr:civic.data.variantgroups, kgr:civic.data.variants, kgr:civic.site, kgr:genecards.web.interface, kgr:myvariant.api, kgr:obo-db-ingest.civic.gid.json, kgr:obo-db-ingest.civic.gid.obo, kgr:obo-db-ingest.civic.gid.owl, kgr:obo-db-ingest.civic.gid.sssom.tsv, kgr:obo-db-ingest.civic.gid.tsv, kgr:service-kp.trapi, kgr:spoke-okn.graph, kgr:spoke.graph ; schema1:identifier "civic" ; schema1:name "CIViC" ; skos:inScheme "biomedical", "cancer", "clinical", "genetic variation", "genomics", "precision medicine" ; adms:status "Active" ; foaf:homepage . kgr:cl a schema1:Ontology ; rdfs:label "Cell Ontology" ; dcterms:created "2025-06-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Cell Ontology is a structured controlled vocabulary for cell types in animals." ; dcterms:identifier "cl" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:babel.compendia, kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:brain-cell-kg.owl-mappings, kgr:brain-cell-kg.repository, kgr:cl-kg.api.neo4j, kgr:cl.cl-base.json, kgr:cl.cl-base.obo, kgr:cl.cl-base.owl, kgr:cl.cl-basic.json, kgr:cl.cl-basic.obo, kgr:cl.cl-basic.owl, kgr:cl.json, kgr:cl.kg-bioportal, kgr:cl.obo, kgr:cl.owl, kgr:ctd.anatomy, kgr:drugmechdb.graph, kgr:efo.obo, kgr:efo.owl, kgr:genomickb.graph, kgr:hra-kg.graph.json, kgr:hra-kg.graph.nq, kgr:hra-kg.graph.nt, kgr:hra-kg.graph.ttl, kgr:hra-kg.graph.xml, kgr:hra.data, kgr:hra.knowledge-graph, kgr:ibkh.graph, kgr:mechreponet.kg, kgr:nlm-ckn.graph, kgr:np-kg.graph.networkx, kgr:np-kg.graph.tsv, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:pheknowlator.graph, kgr:rna-kg.kg.edges, kgr:rna-kg.kg.neo4j, kgr:rna-kg.kg.nodes, kgr:spoke-okn.graph, kgr:spoke.graph, kgr:sri-reference-kg.graph, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:identifier "cl" ; schema1:name "Cell Ontology" ; doap:repository ; skos:inScheme "anatomy and development", "biological systems", "cell biology" ; adms:status "Active" ; foaf:homepage . kgr:cl-kg a schema1:KnowledgeGraph ; rdfs:label "Cell Ontology Knowledge Graph (CL-KG)" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "CL-KG is a knowledge graph integrating the cell ontology and linked ontologies with hierarchical annotations of single cell transcriptomics data from CellXGene." ; dcterms:identifier "cl-kg" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cl-kg.api.neo4j ; schema1:name "Cell Ontology Knowledge Graph (CL-KG)" ; doap:repository ; skos:inScheme "biological systems", "cell biology", "single-cell analysis" ; adms:status "Active" ; foaf:homepage . kgr:clao a schema1:Ontology ; rdfs:label "Collembola Anatomy Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "CLAO is an ontology of anatomical terms employed in morphological descriptions for the Class Collembola (Arthropoda: Hexapoda)." ; dcterms:identifier "clao" ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:clao.kg-bioportal, kgr:clao.obo, kgr:clao.owl ; schema1:name "Collembola Anatomy Ontology" ; doap:repository ; skos:inScheme "anatomy and development" ; adms:status "Active" ; foaf:homepage . kgr:climatemodelskg a schema1:KnowledgeGraph ; rdfs:label "Climate Models KG" ; dcterms:created "2025-12-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Climate Models KG is a knowledge graph to support evaluation and development of climate models." ; dcterms:identifier "climatemodelskg" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:climatemodelskg.graph, kgr:climatemodelskg.sparql, kgr:climatemodelskg.tpf ; schema1:name "Climate Models KG" ; skos:inScheme "climate", "environment", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:clingen a schema1:DataSource ; rdfs:label "ClinGen" ; dcterms:created "2025-06-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Clinical Genome Resource (ClinGen) is a National Institutes of Health (NIH)-funded resource dedicated to building a central resource that defines the clinical relevance of genes and variants for use in precision medicine and research. ClinGen brings together clinical and research experts to develop standard approaches for interpreting genomic variants, curate evidence for gene-disease relationships, and share this knowledge through freely accessible databases." ; dcterms:identifier "clingen" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:clingen.actionability, kgr:clingen.dosage, kgr:clingen.evrepo.api, kgr:clingen.gene-disease, kgr:clingen.variant, kgr:clingen.variant.frameworks, kgr:clingen.web.interface, kgr:dbnsfp.academic, kgr:dbnsfp.commercial, kgr:disgenet.data, kgr:genetics-kp.graph, kgr:kg-monarch.graph, kgr:kg-monarch.graph.duckdb, kgr:kg-monarch.graph.jsonl, kgr:kg-monarch.graph.jsonl.edges, kgr:kg-monarch.graph.jsonl.nodes, kgr:kg-monarch.graph.neo4j, kgr:kg-monarch.graph.neo4j.edges, kgr:kg-monarch.graph.neo4j.nodes, kgr:kg-monarch.graph.rdf, kgr:litvar.api, kgr:litvar.web_interface, kgr:mygene.api, kgr:pavs-kg.api, kgr:pavs-kg.phenopackets, kgr:pavs-kg.portal, kgr:pavs-kg.sparql, kgr:service-kp.trapi, kgr:sri-reference-kg.graph, kgr:translator.geneticskp.graph, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:identifier "clingen" ; schema1:name "ClinGen" ; skos:inScheme "biomedical", "clinical", "genetic variation", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:clinical-data-kp a schema1:KnowledgeGraph ; rdfs:label "Clinical Data KP" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A Translator Knowledge Provider integrating clinical data." ; dcterms:identifier "clinical-data-kp" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:clinical-data-kp.docs, kgr:clinical-data-kp.portal ; schema1:name "Clinical Data KP" ; doap:repository ; skos:inScheme "biomedical", "clinical", "electronic health records", "information technology", "medical imaging" ; adms:status "Active" ; foaf:homepage . kgr:clinicalkg a schema1:KnowledgeGraph ; rdfs:label "Clinical Knowledge Graph (CKG)" ; dcterms:created "2025-08-12T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Clinical Knowledge Graph (CKG) is an open-source platform that integrates proteomics and clinical data with knowledge from diverse biomedical databases and literature to support precision medicine. The CKG has reported scale of ~16 million nodes and ~220 million relationships and provides tooling for analysis, reporting, and knowledge discovery." ; dcterms:identifier "clinicalkg" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:clinicalkg.docs, kgr:clinicalkg.graph ; schema1:name "Clinical Knowledge Graph (CKG)" ; doap:repository ; skos:inScheme "biomedical", "clinical", "precision medicine", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:clinicaltrialsgov a schema1:DataSource ; rdfs:label "ClinicalTrials.gov" ; dcterms:created "2025-05-28T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ClinicalTrials.gov is a database of privately and publicly funded clinical studies conducted around the world, maintained by the National Library of Medicine (NLM) at the National Institutes of Health (NIH). The registry contains information on over 400,000 studies covering a wide range of diseases and conditions, providing details about study design, locations, eligibility criteria, interventions, outcomes, and results. ClinicalTrials.gov serves as the primary registry for clinical trials required by the FDA Amendments Act and is a data provider to the WHO International Clinical Trials Registry Platform (ICTRP). studies conducted around the world, maintained by the National Library of Medicine (NLM) at the National Institutes of Health (NIH). The registry contains information on over 400,000 studies covering a wide range of diseases and conditions, providing details about study design, locations, eligibility criteria, interventions, outcomes, and results. ClinicalTrials.gov serves as the primary registry for clinical trials required by the FDA Amendments Act and WHO International Clinical Trials Registry Platform (ICTRP)." ; dcterms:identifier "clinicaltrialsgov" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:aact.database, kgr:aact.downloads, kgr:aact.pipe_delimited, kgr:acukg.csv, kgr:acukg.json, kgr:acukg.rdf, kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:clinicaltrialsgov.aact, kgr:clinicaltrialsgov.api, kgr:clinicaltrialsgov.docs, kgr:clinicaltrialsgov.downloads, kgr:clinicaltrialsgov.search, kgr:disgenet.data, kgr:ecrin-mdr.api, kgr:ecrin-mdr.portal, kgr:genecards.clinical.trials, kgr:genecards.web.interface, kgr:indra.cogex.code, kgr:kg-predict.ad_nct_evidence, kgr:kg-predict.ad_predictions, kgr:klocd.portal, kgr:multiomics-kp.graph, kgr:myaura.graph, kgr:nihreporter.clinicalstudies, kgr:obo-db-ingest.clinicaltrialsgov.json, kgr:obo-db-ingest.clinicaltrialsgov.obo, kgr:obo-db-ingest.clinicaltrialsgov.owl, kgr:obo-db-ingest.clinicaltrialsgov.sssom.tsv, kgr:obo-db-ingest.clinicaltrialsgov.tsv, kgr:onco.all_json, kgr:repodb.full_dataset, kgr:spoke-okn.graph, kgr:spoke.graph, kgr:translator.ctkp.graph, kgr:ttd.biomarker-disease, kgr:ttd.drug-disease, kgr:ttd.target-compound, kgr:ttd.target-disease, kgr:ttd.target-drug, kgr:ttd.targets-raw, kgr:who-ictrp.portal, kgr:who-ictrp.search-export, kgr:who-ictrp.web-service, kgr:yoda.trial-catalog ; schema1:identifier "clinicaltrials" ; schema1:name "ClinicalTrials.gov" ; doap:repository ; skos:inScheme "biomedical", "clinical", "clinical trials", "drug discovery", "precision medicine", "public health" ; skos:notation "FAIRsharing.mewhad" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ncbi . kgr:clinpgx a schema1:Resource ; rdfs:label "ClinPGx" ; dcterms:created "2026-09-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ClinPGx is a clinical pharmacogenomics knowledge resource that unifies the PharmGKB knowledge base, the CPIC prescribing guidelines and the PharmCAT genotype-to-phenotype tool under one site. It launched on 2025-07-30 as the successor to PharmGKB; pharmgkb.org and cpicpgx.org URLs redirect to their clinpgx.org equivalents and the PharmGKB bulk downloads are served from api.clinpgx.org. Content includes curated clinical and variant annotations, drug labels, pathways, gene-drug pairs drawn from CPIC, DPWG and FDA sources, and allele definition and frequency tables." ; dcterms:identifier "clinpgx" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:clinpgx.api, kgr:clinpgx.downloads, kgr:clinpgx.portal, kgr:medgen.csv, kgr:medgen.mgdef ; schema1:name "ClinPGx" ; skos:inScheme "biomedical", "chemistry and biochemistry", "clinical", "genomics", "pharmacogenomics", "pharmacology", "precision medicine" ; adms:status "Active" ; foaf:homepage . kgr:clinvar a schema1:DataSource ; rdfs:label "ClinVar" ; dcterms:created "2025-06-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ClinVar is a freely accessible, public archive of reports of human genetic variations and their relationships to human health. It collects and presents data on variants found in patient samples, classifications for diseases and drug responses, and supporting evidence. ClinVar enables access to and communication about the clinical significance of genetic variants, providing healthcare professionals, researchers, and the public with vital information for interpreting genetic test results." ; dcterms:identifier "clinvar" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:activedriverdb.downloads, kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:clinvar.api, kgr:clinvar.tab, kgr:clinvar.vcf.grch37, kgr:clinvar.vcf.grch38, kgr:clinvar.web, kgr:clinvar.xml, kgr:dbnsfp.academic, kgr:dbnsfp.commercial, kgr:disgenet.data, kgr:genecards.disease.associations, kgr:genecards.variant.data, kgr:genecards.web.interface, kgr:genetics-kp.graph, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:kg-monarch.graph, kgr:kg-monarch.graph.duckdb, kgr:kg-monarch.graph.jsonl, kgr:kg-monarch.graph.jsonl.edges, kgr:kg-monarch.graph.jsonl.nodes, kgr:kg-monarch.graph.neo4j, kgr:kg-monarch.graph.neo4j.edges, kgr:kg-monarch.graph.neo4j.nodes, kgr:kg-monarch.graph.rdf, kgr:litvar.api, kgr:litvar.web_interface, kgr:myvariant.api, kgr:pavs-kg.api, kgr:pavs-kg.phenopackets, kgr:pavs-kg.portal, kgr:pavs-kg.sparql, kgr:petagraph.graph, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:pheknowlator.graph, kgr:prokn.clinvar.gene.associated_with.diseaseorphenotype.edges, kgr:pubchem.substances.asn, kgr:pubchem.substances.sdf, kgr:raras.encyclopedia, kgr:raras.portal, kgr:rdf-portal.sparql.ncbi, kgr:service-kp.trapi, kgr:sniff.federation-edges, kgr:sniff.federation-nodes, kgr:sri-reference-kg.graph, kgr:translator.geneticskp.graph, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:identifier "clinvar" ; schema1:name "ClinVar" ; skos:inScheme "biomedical", "clinical", "genetic variation", "genomics", "precision medicine" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ncbi . kgr:clo a schema1:Ontology ; rdfs:label "Cell Line Ontology" ; dcterms:created "2025-06-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology to standardize and integrate cell line information and to support computer-assisted reasoning." ; dcterms:identifier "clo" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:babel.compendia, kgr:clo.kg-bioportal, kgr:clo.owl, kgr:efo.obo, kgr:efo.owl, kgr:np-kg.graph.networkx, kgr:np-kg.graph.tsv, kgr:orkg.dump, kgr:pheknowlator.graph ; schema1:name "Cell Line Ontology" ; doap:repository ; skos:inScheme "anatomy and development", "biological systems", "cell biology" ; adms:status "Active" ; foaf:homepage . kgr:clue a schema1:DataSource ; rdfs:label "CLUE" ; dcterms:created "2025-08-12T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "CLUE (formerly known as the Connectivity Map or CMap 2.0) is a comprehensive resource for connecting drugs, genes, and diseases through large-scale perturbational data. Built and maintained by the Broad Institute, CLUE provides access to over 1.3 million gene expression profiles from the LINCS L1000 assay, covering more than 42,000 perturbagens (drugs, genetic reagents, and other compounds) tested across multiple cell lines. The platform enables researchers to discover connections between diseases, drugs, and biological mechanisms through gene expression signatures." ; dcterms:identifier "clue" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:bioteque.embeddings ; schema1:name "CLUE" ; doap:repository ; skos:inScheme "biomedical", "drug discovery", "genomics", "high-throughput screening", "systems biology" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:broad . kgr:clyh a schema1:Ontology ; rdfs:label "Clytia hemisphaerica Development and Anatomy Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Clytia hemisphaerica Development and Anatomy Ontology (CLYH) describes the anatomical and developmental features of the Clytia hemisphaerica life cycle." ; dcterms:identifier "clyh" ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:clyh.kg-bioportal, kgr:clyh.obo, kgr:clyh.owl ; schema1:name "Clytia hemisphaerica Development and Anatomy Ontology" ; doap:repository ; skos:inScheme "anatomy and development" ; adms:status "Active" ; foaf:homepage . kgr:cm4ai_talent_kg a schema1:KnowledgeGraph ; rdfs:label "CM4AI Talent KG" ; dcterms:created "2025-07-16T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A knowledge graph containing connections between researchers, projects, and publications centering on members of the Bridge2AI Consortium and the Cell Maps for AI (CM4AI) project." ; dcterms:identifier "cm4ai_talent_kg" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cm4ai_talent_kg.graph, kgr:cm4ai_talent_kg.web_interface ; schema1:name "CM4AI Talent KG" ; skos:inScheme "literature", "scholarly communication" ; adms:status "Active" ; foaf:homepage . kgr:cmap a schema1:DataSource ; rdfs:label "Connectivity Map" ; dcterms:created "2025-01-10T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Connectivity Map (CMap) is a groundbreaking genome-scale perturbation resource containing over 3 million gene expression profiles cataloging transcriptional responses to chemical, genetic, and disease perturbations across multiple cancer cell types. Developed by the Broad Institute as part of the NIH Library of Integrated Network-Based Cellular Signatures (LINCS) program, CMap addresses fundamental challenges in understanding protein function and small molecule mechanisms of action by creating a comprehensive catalog of cellular signatures representing systematic perturbation. The database employs the L1000 high-throughput gene expression assay, which directly measures ~978 landmark genes and computationally infers expression of ~11,350 additional genes using inference algorithms, providing a cost-effective reduced representation of the transcriptome. CMap contains signatures from approximately 5,000 small-molecule compounds, 3,000 genetic reagents including shRNAs, CRISPR knockdowns, and overexpression constructs, tested primarily across nine core cancer cell lines that include A375, A549, HA1E, HCC515, HT29, HEPG2, MCF7, PC3, and VCAP. The resource enables researchers to query with their own gene expression signatures to identify perturbagens that induce similar or opposing transcriptional responses, thereby discovering unexpected connections between diseases, drug mechanisms, and protein functions. CMap data is accessible through CLUE, a cloud-based unified environment providing user-friendly web applications including query tools, data browsers, metadata search, and visualization apps for exploring perturbation-driven gene expression patterns. The database supports diverse research applications including drug repurposing by identifying compounds with similar mechanisms, target identification by finding small molecules that mimic genetic perturbations, disease mechanism understanding by connecting disease signatures to perturbagen responses, and biomarker discovery through systematic analysis of transcriptional responses. While personalized support ended in July 2022, all data, tools, and extensive documentation through Connectopedia remain fully accessible, with over 1.5 million replicate-collapsed signatures and 3 million profiles available for download and programmatic access via Python libraries and APIs." ; dcterms:identifier "cmap" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:cmap.clue, kgr:cmap.connectopedia, kgr:cmap.data_downloads, kgr:cmap.python_api, kgr:cmap.query_app, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:molepro.api, kgr:molepro.catalog, kgr:molepro.graph.edges, kgr:molepro.graph.nodes, kgr:molepro.trapi, kgr:pharmkg.graph, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:identifier "cmap" ; schema1:name "Connectivity Map" ; doap:repository ; skos:altLabel "CMap", "Connectivity Map", "LINCS L1000" ; skos:inScheme "biomedical", "drug discovery", "gene expression profiling", "genomics", "high-throughput screening", "pharmacology" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:broad . kgr:cmaup a schema1:DataSource ; rdfs:label "CMAUP" ; dcterms:created "2026-05-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "CMAUP is a database of collective molecular activities of useful plants, linking plant ingredients to targets, phenotypes, diseases, pathways, and traditional uses to support natural product and medicinal plant research." ; dcterms:identifier "cmaup" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cmaup.publication, kgr:oregano.graph ; schema1:name "CMAUP" ; skos:inScheme "biomedical", "chemistry and biochemistry", "drug discovery", "natural products", "organisms", "pharmacology", "plants" ; adms:status "Active" ; foaf:homepage . kgr:cmf a schema1:Ontology ; rdfs:label "CranioMaxilloFacial ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Description unavailable." ; dcterms:identifier "cmf" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cmf.owl ; schema1:name "CranioMaxilloFacial ontology" ; skos:inScheme "anatomy and development", "biomedical" ; adms:status "Inactive" ; foaf:homepage . kgr:cmip a schema1:DataSource ; rdfs:label "Coupled Model Intercomparison Project (CMIP)" ; dcterms:created "2026-07-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Coupled Model Intercomparison Project (CMIP) is a coordinated climate modeling framework organized under the World Climate Research Programme (WCRP). Its CMIP6 Controlled Vocabularies (CMIP6CV) define the standardized identifiers used across CMIP, including source_id (models), experiment_id (experiments), activity_id (MIP activities), and institution_id, published as machine-readable files." ; dcterms:identifier "cmip" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:climatemodelskg.graph, kgr:cmip.cmip6cvs ; schema1:name "Coupled Model Intercomparison Project (CMIP)" ; skos:inScheme "climate", "environment", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:cmo a schema1:Ontology ; rdfs:label "Clinical measurement ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Morphological and physiological measurement records generated from clinical and model organism research and health programs." ; dcterms:identifier "cmo" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cmo.kg-bioportal, kgr:cmo.obo, kgr:cmo.owl ; schema1:name "Clinical measurement ontology" ; doap:repository ; skos:inScheme "biomedical", "clinical", "phenotype" ; adms:status "Active" ; foaf:homepage . kgr:cngbdb a schema1:DataSource ; rdfs:label "China National GeneBank DataBase" ; dcterms:created "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The China National GeneBank DataBase (CNGBdb) is a platform for sharing and analyzing biological data, run by the China National GeneBank (CNGB) in Shenzhen and launched in 2018. Its main archive is the CNGB Sequence Archive (CNSA), established in 2017, which archives raw sequencing reads and analysis results organized as projects, samples, experiments, runs, assemblies and variations, along with metabolomic, single-cell and spatial transcriptomic data. CNGBdb also offers search across literature, gene, protein, sequence, organism and other sub-databases that include data integrated from NCBI and EBI, plus the Spatial Transcript Omics DataBase (STOmicsDB). Public CNSA data is free to download over FTP, HTTPS and Aspera." ; dcterms:identifier "cngbdb" ; dcterms:isReferencedBy , ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cngbdb.cnsa, kgr:cngbdb.cnsa.ftp, kgr:cngbdb.cnsa.handbook, kgr:cngbdb.portal, kgr:cngbdb.stomicsdb ; schema1:name "China National GeneBank DataBase" ; skos:altLabel "CNGB Nucleotide Sequence Archive", "CNGB Sequence Archive", "CNGBdb", "CNSA" ; skos:inScheme "biodiversity", "genomics", "organisms" ; skos:notation "FAIRsharing.9btRvC" ; adms:status "Active" ; foaf:homepage . kgr:cob a schema1:Ontology ; rdfs:label "Core Ontology for Biology and Biomedicine" ; dcterms:created "2025-06-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "COB brings together key terms from a wide range of OBO projects to improve interoperability." ; dcterms:identifier "cob" ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cob.cob-base.owl, kgr:cob.cob-native.owl, kgr:cob.kg-bioportal, kgr:cob.owl, kgr:cob.products.demo-cob.owl, kgr:efo.obo, kgr:efo.owl ; schema1:name "Core Ontology for Biology and Biomedicine" ; doap:repository ; skos:inScheme "biological systems", "general" ; adms:status "Active" ; foaf:homepage . kgr:cog a schema1:DataSource ; rdfs:label "COG" ; dcterms:created "2026-01-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A resource for orthology-based functional classification of proteins into clusters of orthologous groups (COGs) across complete genomes." ; dcterms:identifier "cog" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cog.download.cog-24-csv, kgr:cog.download.cogorg24-fasta, kgr:cog.portal, kgr:string.cog.links, kgr:string.cog.links.detailed, kgr:string.database, kgr:string.protein.links, kgr:string.protein.links.detailed, kgr:string.protein.links.full, kgr:string.protein.physical.links, kgr:string.protein.physical.links.detailed, kgr:string.protein.physical.links.full ; schema1:name "COG" ; skos:altLabel "COG", "Clusters of Orthologous Groups" ; skos:inScheme "genomics", "microbiology", "molecular evolution" ; adms:status "Active" ; foaf:homepage . kgr:cohd a schema1:DataSource ; rdfs:label "Columbia Open Health Data (COHD)" ; dcterms:created "2025-11-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Columbia Open Health Data (COHD) API provides access to observed clinical frequencies and co-occurrence frequencies from electronic health records at Columbia University Medical Center. The database contains counts and frequencies of conditions, procedures, drug exposures, and patient demographics from the OHDSI common data model, along with statistical associations between clinical concepts. To protect patient privacy, all concepts where count ≤10 were excluded and counts were randomized using Poisson distribution. COHD offers multiple datasets including 5-year (2013-2017) and lifetime data, both in hierarchical and non-hierarchical forms, plus beta temporal co-occurrence data." ; dcterms:identifier "cohd" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:ars.api, kgr:ars.portal, kgr:automat.cohd, kgr:cohd.api, kgr:cohd.docs, kgr:cohd.notebooks, kgr:cohd.portal, kgr:cqs.code, kgr:translator.cohd.graph, kgr:translator.translator_kg.graph ; schema1:identifier "cohd" ; schema1:name "Columbia Open Health Data (COHD)" ; doap:repository ; skos:inScheme "biomedical", "clinical", "electronic health records", "precision medicine", "public health" ; adms:status "Active" ; foaf:homepage . kgr:colao a schema1:Ontology ; rdfs:label "Coleoptera Anatomy Ontology (COLAO)" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Coleoptera Anatomy Ontology contains terms used for describing the anatomy and phenotype of beetles in biodiversity research. It has been built using the Ontology Develoment Kit, with the Ontology for the Anatomy of the Insect Skeleto-Muscular system (AISM) as a backbone." ; dcterms:identifier "colao" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:colao.kg-bioportal, kgr:colao.obo, kgr:colao.owl ; schema1:name "Coleoptera Anatomy Ontology (COLAO)" ; doap:repository ; skos:inScheme "anatomy and development", "insects", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:collectri a schema1:DataSource ; rdfs:label "CollecTRI" ; dcterms:created "2026-06-15T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "CollecTRI is a comprehensive collection of signed transcription factor (TF)-target gene regulatory interactions compiled from 12 different resources. It provides high-confidence regulons with expanded TF coverage and the sign (activation or repression) of each interaction, enabling accurate estimation of transcription factor activities from gene expression data. The regulons are distributed through the decoupler ecosystem and OmniPath for downstream enrichment and footprint analysis." ; dcterms:identifier "collectri" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:collectri.decoupler, kgr:collectri.docs, kgr:collectri.regulons ; schema1:name "CollecTRI" ; doap:repository ; skos:inScheme "gene regulation", "genomics", "pathways", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:compartments a schema1:DataSource ; rdfs:label "COMPARTMENTS" ; dcterms:created "2025-07-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "COMPARTMENTS is an evidence-weighted subcellular localization knowledge resource that integrates experimental data, manual curation, high-throughput localization screens, automatic text mining, and sequence-based predictions to assign proteins to cellular compartments with confidence scores." ; dcterms:identifier "compartments" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:bioteque.embeddings, kgr:compartments.downloads, kgr:compartments.portal, kgr:genecards.web.interface, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:string.cog.links, kgr:string.cog.links.detailed, kgr:string.database, kgr:string.protein.links, kgr:string.protein.links.detailed, kgr:string.protein.links.full, kgr:string.protein.physical.links, kgr:string.protein.physical.links.detailed, kgr:string.protein.physical.links.full ; schema1:name "COMPARTMENTS" ; skos:inScheme "biological systems", "cell biology", "proteomics", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:compath a schema1:DataSource ; rdfs:label "ComPath" ; dcterms:created "2026-01-28T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A pathway mapping and harmonization framework for integrating and comparing pathway knowledge across multiple pathway databases." ; dcterms:identifier "compath" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:compath.catalog, kgr:compath.curation-protocol, kgr:compath.overview, kgr:compath.portal, kgr:compath.similarity, kgr:unibiomap.auxs, kgr:unibiomap.links, kgr:unibiomap.pred, kgr:unibiomap.pred.full ; schema1:name "ComPath" ; doap:repository ; skos:altLabel "ComPath" ; skos:inScheme "pathways" ; adms:status "Active" ; foaf:homepage . kgr:complexportal a schema1:DataSource ; rdfs:label "Complex Portal" ; dcterms:created "2025-07-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Complex Portal is an encyclopaedic resource of macromolecular complexes from model organisms, providing manually curated and high-confidence machine-learning predicted protein complexes with comprehensive structural and functional annotation." ; dcterms:identifier "complexportal" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , , , , , , , , , , , , , , , , , , , , , , , , , , , ; schema1:hasPart kgr:babel.compendia, kgr:complexportal.arabidopsis.complextab, kgr:complexportal.bsubtilis.complextab, kgr:complexportal.cattle.complextab, kgr:complexportal.chicken.complextab, kgr:complexportal.complextab, kgr:complexportal.db-crossrefs, kgr:complexportal.dictyostelium.complextab, kgr:complexportal.documentation, kgr:complexportal.dog.complextab, kgr:complexportal.ecoli.complextab, kgr:complexportal.fissionyeast.complextab, kgr:complexportal.fruitfly.complextab, kgr:complexportal.hpylori.complextab, kgr:complexportal.human.complextab, kgr:complexportal.human.predicted.complextab, kgr:complexportal.human.predicted.psi25, kgr:complexportal.human.predicted.psi30, kgr:complexportal.human.psi25, kgr:complexportal.human.psi30, kgr:complexportal.id-translation, kgr:complexportal.lamprey.complextab, kgr:complexportal.leishmania.complextab, kgr:complexportal.mouse.complextab, kgr:complexportal.mouse.psi25, kgr:complexportal.mouse.psi30, kgr:complexportal.paeru.complextab, kgr:complexportal.pig.complextab, kgr:complexportal.portal, kgr:complexportal.psi25, kgr:complexportal.psi30, kgr:complexportal.pufferfish.takifugu.complextab, kgr:complexportal.pufferfish.tetraodon.complextab, kgr:complexportal.rabbit.complextab, kgr:complexportal.rat.complextab, kgr:complexportal.released-complexes, kgr:complexportal.sarscov2.complextab, kgr:complexportal.seaurchin.complextab, kgr:complexportal.sheep.complextab, kgr:complexportal.toxoplasma.complextab, kgr:complexportal.webservice, kgr:complexportal.worm.complextab, kgr:complexportal.xenopus.complextab, kgr:complexportal.yeast.psi25, kgr:complexportal.yeast.psi30, kgr:complexportal.yeast.s288c.complextab, kgr:complexportal.zebrafish.complextab, kgr:goa.ftp, kgr:mechreponet.kg, kgr:obo-db-ingest.complexportal.json, kgr:obo-db-ingest.complexportal.obo, kgr:obo-db-ingest.complexportal.owl, kgr:obo-db-ingest.complexportal.sssom.tsv, kgr:obo-db-ingest.complexportal.tsv, kgr:service-kp.trapi ; schema1:identifier "complex-portal" ; schema1:name "Complex Portal" ; skos:inScheme "protein interactions", "proteomics", "systems biology" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ebi . kgr:connections-hypothesis-kp a schema1:KnowledgeGraph ; rdfs:label "Connections Hypothesis KP" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A Translator Knowledge Provider exploring connections hypotheses." ; dcterms:identifier "connections-hypothesis-kp" ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ars.api, kgr:ars.portal, kgr:connections-hypothesis-kp.code, kgr:connections-hypothesis-kp.graph, kgr:connections-hypothesis-kp.smartapi ; schema1:name "Connections Hypothesis KP" ; skos:inScheme "biomedical" ; adms:status "Active" ; foaf:homepage . kgr:coralkinome a schema1:DataSource ; rdfs:label "CoralKinome" ; dcterms:created "2025-11-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "CoralKinome is a comprehensive resource for coral kinase sequences and annotations, providing phylogenetic and functional information about protein kinases in coral species to support coral biology research and conservation efforts." ; dcterms:identifier "coralkinome" ; dcterms:modified "2026-06-27T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:kinace.portal ; schema1:name "CoralKinome" ; skos:altLabel "Coral Kinome Database", "CoralKinome" ; skos:inScheme "genomics", "systems biology" ; adms:status "Inactive" ; foaf:homepage . kgr:cord-19 a schema1:DataSource ; rdfs:label "COVID-19 Open Research Dataset" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "CORD-19 (the COVID-19 Open Research Dataset) is a freely available corpus of tens of thousands of scholarly articles about COVID-19, SARS-CoV-2, and the broader coronavirus family, assembled by the Allen Institute for AI (AI2) in partnership with the White House Office of Science and Technology Policy (OSTP), the National Library of Medicine (NLM), Microsoft Research, the Chan Zuckerberg Initiative, and others. Each release packaged article metadata, machine-readable full text (parsed from PDFs and PubMed Central XML), and precomputed document embeddings, making the corpus a widely used resource for text mining, information retrieval, and natural language processing during the pandemic. It is an upstream literature source for KG-COVID-19. The dataset is no longer maintained; its final release was issued on 2 June 2022 and AI2 has since sunset the project." ; dcterms:identifier "cord-19" ; dcterms:isReferencedBy ; dcterms:license "CORD-19 dataset license (per-article licenses; see dataset license agreement)" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:automat.robokopplus, kgr:cord-19.corpus, kgr:cord-19.landing, kgr:kg-covid-19.graph ; schema1:identifier "cord19" ; schema1:name "COVID-19 Open Research Dataset" ; doap:repository ; skos:inScheme "biomedical", "infectious disease", "information technology", "literature", "natural language processing", "public health" ; adms:status "Inactive" ; foaf:homepage . kgr:corum a schema1:DataSource ; rdfs:label "CORUM" ; dcterms:created "2025-07-22T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "CORUM (Comprehensive Resource of Mammalian Protein Complexes) is a curated database of experimentally characterized protein complexes from mammalian organisms, particularly human, mouse, and rat, with a focus on manually annotated information from scientific literature." ; dcterms:identifier "corum" ; dcterms:isReferencedBy , , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , , , ; schema1:hasPart kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:bioteque.embeddings, kgr:cancer-genome-interpreter.clinicalkg.graph, kgr:clinicalkg.graph, kgr:corum.all_complexes, kgr:corum.core_complexes, kgr:corum.mitab, kgr:corum.psi_mi, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:pathwaycommons.biopax, kgr:pathwaycommons.downloads, kgr:pathwaycommons.gmt, kgr:pathwaycommons.sif, kgr:pathwaycommons.txt ; schema1:name "CORUM" ; doap:repository ; skos:inScheme "chemistry and biochemistry", "protein interactions", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:cosmic a schema1:DataSource ; rdfs:label "COSMIC" ; dcterms:created "2025-07-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "COSMIC (Catalogue Of Somatic Mutations In Cancer) is a comprehensive resource for somatic mutations in human cancer. It curates, standardizes, and integrates mutation data across genes, cancer types, and samples, and provides access via a web portal and licensed downloads." ; dcterms:identifier "cosmic" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:biomuta.dataset, kgr:bioteque.embeddings, kgr:cellmodelpassports.gene_identifiers, kgr:cellmodelpassports.model_list, kgr:cosmic.downloads, kgr:cosmic.kb.overview, kgr:cosmic.portal, kgr:genecards.web.interface, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:kg-jensenlab-diseases.edges.kgx, kgr:kg-jensenlab-diseases.edges.trapi, kgr:kg-jensenlab-diseases.nodes.kgx, kgr:myvariant.api, kgr:redrugs.source, kgr:rna-kg.kg.edges, kgr:rna-kg.kg.neo4j, kgr:rna-kg.kg.nodes ; schema1:identifier "cosmic" ; schema1:name "COSMIC" ; skos:inScheme "biomedical", "cancer", "genetic variation", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:courage a schema1:KnowledgeGraph ; rdfs:label "COURAGE Knowledge Graph" ; dcterms:created "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The COURAGE knowledge graph is the linked data registry produced by the COURAGE project (Cultural Opposition - Understanding the Cultural Heritage of Dissent in the Former Socialist Countries). It describes public and private collections documenting cultural opposition under socialism, roughly 1950 to 1990, across the member and candidate states of the European Union that were part of the former socialist bloc. Alongside collections it describes persons, person roles, organizations, groups, events, and featured collection items, covering material such as dissident literature, samizdat and other unofficial publications, underground music scenes, avant-garde art, and religious and civic movements. Content was contributed by researchers from more than fifteen countries, and descriptions are held simultaneously in fifteen languages, which the project cited as a motivation for its RDF-based design. The schema is the COURAGE Ontology, published in OWL; a separate effort re-expressed the dataset in CIDOC-CRM and validated the conversion with SPARQL and SHACL, and another linked COURAGE entities to Wikidata." ; dcterms:identifier "courage" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:courage.dump, kgr:courage.ontology, kgr:courage.registry, kgr:courage.sparql, kgr:courage.sztaki-page ; schema1:name "COURAGE Knowledge Graph" ; skos:altLabel "COURAGE", "COURAGE Registry", "Cultural Opposition: Understanding the Cultural Heritage of Dissent in the Former Socialist Countries" ; skos:inScheme "humanities and cultural heritage" ; adms:status "Orphaned" ; foaf:homepage . kgr:cpathkg a schema1:KnowledgeGraph ; rdfs:label "C-Path Knowledge Graph" ; dcterms:created "2025-04-11T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The C-Path Knowledge Graph project is intended to increase discoverability of rare disease datasets through integration with the Monarch Knowlege Graph." ; dcterms:identifier "cpathkg" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cpathkg.code ; schema1:name "C-Path Knowledge Graph" ; doap:repository ; skos:inScheme "biomedical", "rare disease" ; adms:status "Active" ; foaf:homepage . kgr:cpdb a schema1:Aggregator ; rdfs:label "ConsensusPathDB" ; dcterms:created "2025-11-19T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ConsensusPathDB integrates molecular interaction data from over 30 public databases, including protein-protein, genetic, metabolic, signaling, gene regulatory and drug-target interactions. It provides comprehensive pathway and functional analysis tools, allowing users to explore molecular networks and pathways from multiple sources through a unified interface. The frames-based site remains reachable and reports Release 35 for the human instance, dated June 5, 2021." ; dcterms:identifier "cpdb" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , , ; schema1:hasPart kgr:cpdb.downloads, kgr:cpdb.web, kgr:cpdb.wsdl, kgr:dbnsfp.academic, kgr:dbnsfp.commercial, kgr:mygene.api, kgr:rdbridge.graph, kgr:service-kp.trapi ; schema1:identifier "cpdb" ; schema1:name "ConsensusPathDB" ; skos:altLabel "CPDB", "CPDB-human", "ConsensusPathDB-human" ; skos:inScheme "biomedical", "chemistry and biochemistry", "pathways", "protein interactions", "proteomics", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:cpic a schema1:Resource ; rdfs:label "CPIC" ; dcterms:created "2025-09-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Clinical Pharmacogenetics Implementation Consortium (CPIC) creates, curates, and disseminates freely available, peer-reviewed, evidence-based, and updatable clinical practice guidelines that translate patient pharmacogenetic test results into actionable prescribing decisions. CPIC also publishes structured gene-drug annotations, allele function data, standardized terminology resources, and implementation tools (database, API, SOPs, educational materials). Since 2025-07-30 CPIC content is hosted within ClinPGx (registry id clinpgx) and cpicpgx.org pages redirect there; the CPIC name and guidelines continue under ClinPGx." ; dcterms:identifier "cpic" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:clinpgx.portal, kgr:cpic.alleles, kgr:cpic.api, kgr:cpic.cyp2d6_translation, kgr:cpic.genes_drugs, kgr:cpic.guidelines, kgr:cpic.onepager, kgr:cpic.overview.slides, kgr:cpic.portal, kgr:cpic.sop, kgr:cpic.term_standardization, kgr:epigraphdb.graph ; schema1:name "CPIC" ; doap:repository ; skos:inScheme "biomedical", "clinical", "drug discovery", "pharmacogenomics", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:cpt a schema1:DataSource ; rdfs:label "Current Procedural Terminology" ; dcterms:created "2026-02-26T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Current Procedural Terminology (CPT) is a medical code set maintained by the American Medical Association for describing procedures and services performed by physicians and other healthcare professionals. It is widely used for clinical documentation, billing, reporting, and interoperability across healthcare systems." ; dcterms:identifier "cpt" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cpt.spec, kgr:imo-knowledge-graph.data, kgr:obo-db-ingest.cpt.json, kgr:obo-db-ingest.cpt.obo, kgr:obo-db-ingest.cpt.owl, kgr:obo-db-ingest.cpt.sssom.tsv, kgr:obo-db-ingest.cpt.tsv ; schema1:name "Current Procedural Terminology" ; skos:inScheme "biomedical", "clinical", "clinical coding" ; skos:notation "FAIRsharing.wpxab1" ; adms:status "Active" ; foaf:homepage . kgr:cqs a schema1:Aggregator ; rdfs:label "Translator Curated Query Service" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Translator Curated Query Service (CQS) is an SRI service providing ARA-like reasoning capabilities through customizable inference rules captured as templates, generating predicted edges with provenance metadata and scoring." ; dcterms:identifier "cqs" ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ars.api, kgr:ars.portal, kgr:cqs.code, kgr:cqs.docs ; schema1:identifier "cqs" ; schema1:name "Translator Curated Query Service" ; doap:repository ; skos:altLabel "CQS", "Curated Query Service" ; skos:inScheme "biomedical" ; adms:status "Active" ; foaf:homepage . kgr:craft a schema1:DataSource ; rdfs:label "Colorado Richly Annotated Full-Text Corpus" ; dcterms:created "2026-06-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Colorado Richly Annotated Full-Text (CRAFT) Corpus is a manually annotated corpus of full-text biomedical journal articles. It provides concept annotations against multiple biomedical ontologies along with syntactic and coreference annotations, serving as a gold-standard resource for biomedical natural language processing." ; dcterms:identifier "craft" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:craft.site, kgr:genecards.web.interface ; schema1:name "Colorado Richly Annotated Full-Text Corpus" ; doap:repository ; skos:inScheme "biomedical", "literature", "natural language processing" ; adms:status "Active" ; foaf:homepage . kgr:crd a schema1:Aggregator ; rdfs:label "Comparative RNA Database (CRD)" ; dcterms:created "2025-09-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Comparative RNA Database (CRD) is an aggregator of comparative RNA sequence and secondary structure data, covering ribosomal, intron, and other RNAs. It is published through the Comparative RNA Web (CRW) Site, which relocated from its original University of Texas host to CRW2 (Comparative RNA Web-2)." ; dcterms:identifier "crd" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db ; schema1:name "Comparative RNA Database (CRD)" ; skos:inScheme "genomics", "non-coding RNA" ; adms:status "Active" ; foaf:homepage . kgr:credit a schema1:Ontology ; rdfs:label "Credit" ; dcterms:created "2026-02-26T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "CRediT (Contributor Roles Taxonomy) is a controlled vocabulary of contributor roles used to describe how individuals contributed to research and scholarly outputs. It provides a standardized taxonomy for representing contributions such as conceptualization, software, data curation, and writing." ; dcterms:identifier "credit" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:credit.spec, kgr:obo-db-ingest.credit.json, kgr:obo-db-ingest.credit.obo, kgr:obo-db-ingest.credit.owl, kgr:obo-db-ingest.credit.sssom.tsv, kgr:obo-db-ingest.credit.tsv ; schema1:name "Credit" ; skos:inScheme "general", "information technology", "literature", "scholarly communication" ; skos:notation "FAIRsharing.fe4816" ; adms:status "Active" ; foaf:homepage . kgr:creeds a schema1:DataSource ; rdfs:label "CREEDS" ; dcterms:created "2025-07-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "CREEDS (CRowd Extracted Expression of Differential Signatures) is a database of crowdsourced gene expression signatures for drug, genetic, and disease perturbations." ; dcterms:identifier "creeds" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:bioteque.embeddings, kgr:creeds.automatic_disease_signatures, kgr:creeds.automatic_single_drug, kgr:creeds.automatic_single_gene, kgr:creeds.drugmatrix, kgr:creeds.manual_disease_signatures, kgr:creeds.manual_single_drug, kgr:creeds.manual_single_gene, kgr:creeds.web_interface ; schema1:name "CREEDS" ; skos:inScheme "gene expression profiling", "genomics", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:cro a schema1:Ontology ; rdfs:label "Contributor Role Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A classification of the diverse roles performed in the work leading to a published research output in the sciences. Its purpose to provide transparency in contributions to scholarly published work, to enable improved systems of attribution, credit, and accountability." ; dcterms:identifier "cro" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cro.kg-bioportal, kgr:cro.owl ; schema1:name "Contributor Role Ontology" ; doap:repository ; skos:inScheme "biomedical", "information technology", "literature", "scholarly communication" ; adms:status "Active" ; foaf:homepage . kgr:cropland-data-layer a schema1:DataSource ; rdfs:label "Cropland Data Layer" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Cropland Data Layer (CDL) is an annual, georeferenced, crop-specific land cover raster map covering the conterminous United States, produced by the USDA National Agricultural Statistics Service (NASS). It is generated from satellite imagery and extensive agricultural ground reference data, classifying each 30-meter pixel into crop types and other land cover categories. The CDL serves as an upstream source for KnowWhereGraph and supports agricultural monitoring, acreage estimation, and land use analysis." ; dcterms:identifier "cropland-data-layer" ; dcterms:isReferencedBy ; dcterms:license "US federal government public domain" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cropland-data-layer.croplandcros, kgr:knowwheregraph.graph, kgr:sawgraph.graph ; schema1:name "Cropland Data Layer" ; skos:inScheme "agriculture", "environment" ; adms:status "Active" ; foaf:homepage . kgr:ctd a schema1:DataSource ; rdfs:label "Comparative Toxicogenomics Database" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "CTD is a robust, publicly available database that aims to advance understanding about how environmental exposures affect human health." ; dcterms:identifier "ctd" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:aop-db.data, kgr:automat.ctd, kgr:automat.robokopkg, kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:bioteque.embeddings, kgr:cam-kp.ctd-interactions, kgr:ctd.anatomy, kgr:ctd.batch_query, kgr:ctd.chem_gene_ixn_types, kgr:ctd.chem_gene_ixns, kgr:ctd.chem_go_enriched, kgr:ctd.chem_pathways_enriched, kgr:ctd.chemicals, kgr:ctd.chemicals_diseases, kgr:ctd.diseases_pathways, kgr:ctd.exposure_events, kgr:ctd.exposure_ontology, kgr:ctd.exposure_studies, kgr:ctd.genes, kgr:ctd.genes_diseases, kgr:ctd.genes_pathways, kgr:ctd.medic, kgr:ctd.pathways, kgr:ctd.pheno_term_ixns, kgr:ctd.phenotype_disease_bp, kgr:ctd.phenotype_disease_cc, kgr:ctd.phenotype_disease_mf, kgr:ctd.tetramers, kgr:genecards.web.interface, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:ibkh.graph, kgr:kg-alzheimers.graph, kgr:kg-microbe.graph.biomedical, kgr:kg-microbe.graph.biomedical-function, kgr:kg-microbe.graph.core, kgr:kg-microbe.graph.function, kgr:kg-microbe.graph.raw, kgr:kg-monarch.graph, kgr:kg-monarch.graph.duckdb, kgr:kg-monarch.graph.jsonl, kgr:kg-monarch.graph.jsonl.edges, kgr:kg-monarch.graph.jsonl.nodes, kgr:kg-monarch.graph.neo4j, kgr:kg-monarch.graph.neo4j.edges, kgr:kg-monarch.graph.neo4j.nodes, kgr:kg-monarch.graph.rdf, kgr:klocd.portal, kgr:mechreponet.kg, kgr:molepro.api, kgr:molepro.catalog, kgr:molepro.graph.edges, kgr:molepro.graph.nodes, kgr:molepro.trapi, kgr:mydisease.api, kgr:oregano.graph, kgr:pathwaycommons.biopax, kgr:pathwaycommons.downloads, kgr:pathwaycommons.gmt, kgr:pathwaycommons.sif, kgr:pathwaycommons.txt, kgr:pharmdb.graph, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:pheknowlator.graph, kgr:primekg.graph, kgr:psygenet.genedisease, kgr:service-kp.trapi, kgr:sri-reference-kg.graph, kgr:stitch.api, kgr:stitch.downloads, kgr:stitch.portal, kgr:translator.ctd.graph, kgr:translator.translator_kg.graph, kgr:unibiomap.auxs, kgr:unibiomap.links, kgr:unibiomap.pred, kgr:unibiomap.pred.full ; schema1:identifier "ctd" ; schema1:name "Comparative Toxicogenomics Database" ; skos:inScheme "chemistry and biochemistry", "environment", "environmental exposure", "genomics", "toxicology" ; adms:status "Active" ; foaf:homepage . kgr:ctd2 a schema1:DataSource ; rdfs:label "Cancer Target Discovery and Development Network" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Cancer Target Discovery and Development Network is an NCI functional genomics initiative that releases cancer target discovery, validation, perturbation, and screening data for precision oncology research." ; dcterms:identifier "ctd2" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ctd2.dashboard, kgr:ctd2.data-portal, kgr:ctd2.usage-guide, kgr:depmap.drug_sensitivity ; schema1:name "Cancer Target Discovery and Development Network" ; skos:altLabel "CTD2", "CTD^2", "CTD²" ; skos:inScheme "biomedical", "cancer", "drug discovery", "genomics", "precision medicine" ; adms:status "Active" ; foaf:homepage . kgr:cteno a schema1:Ontology ; rdfs:label "Ctenophore Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An anatomical and developmental ontology for ctenophores (Comb Jellies)" ; dcterms:identifier "cteno" ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:cteno.kg-bioportal, kgr:cteno.owl ; schema1:name "Ctenophore Ontology" ; doap:repository ; skos:inScheme "anatomy and development" ; adms:status "Active" ; foaf:homepage . kgr:ctkp a schema1:KnowledgeGraph ; rdfs:label "Clinical Trials KP" ; dcterms:created "2026-02-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Clinical Trials Knowledge Provider (CTKP) is a Translator knowledge provider maintained by the Multiomics Provider that exposes clinical trial-derived associations from ClinicalTrials.gov (via AACT), including trial interventions, conditions, and related biomedical entities." ; dcterms:identifier "ctkp" ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:automat.ctkp, kgr:cqs.code, kgr:ctkp.docs, kgr:ctkp.smartapi, kgr:translator.ctkp.graph, kgr:translator.translator_kg.graph ; schema1:name "Clinical Trials KP" ; doap:repository ; skos:inScheme "biomedical", "clinical", "clinical trials" ; skos:related "translator" ; adms:status "Active" ; foaf:homepage . kgr:cto a schema1:Ontology ; rdfs:label "CTO: Core Ontology of Clinical Trials" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The core Ontology of Clinical Trials (CTO) will serve as a structured resource integrating basic terms and concepts in the context of clinical trials. Thereby covering clinicaltrails.gov. CoreCTO will serve as a basic ontology to generate extended versions for specific applications such as annotation of variables in study documents from clinical trials." ; dcterms:identifier "cto" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cto.kg-bioportal, kgr:cto.owl ; schema1:name "CTO: Core Ontology of Clinical Trials" ; doap:repository ; skos:inScheme "biomedical", "clinical", "clinical trials" ; adms:status "Active" ; foaf:homepage . kgr:ctrp a schema1:DataSource ; rdfs:label "Cancer Therapeutics Response Portal" ; dcterms:created "2025-11-10T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Cancer Therapeutics Response Portal (CTRP) is a comprehensive cancer cell line profiling resource that links genetic, lineage, and other cellular features of cancer cell lines to small-molecule sensitivity with the goal of accelerating discovery of patient-matched cancer therapeutics. Developed by researchers at the Broad Institute Center for the Science of Therapeutics as part of the NCI Cancer Target Discovery and Development (CTD2) Network, CTRP measured the sensitivity of 860 deeply characterized human cancer cell lines encompassing 25 lineages to an Informer Set of 481 small-molecule probes and drugs that selectively target distinct nodes in cell circuitry. The resource provides correlations between small-molecule sensitivity patterns and basal gene expression profiles from the Cancer Cell Line Encyclopedia (CCLE) across approximately 19,000 transcripts, enabling identification of mechanisms of action, cellular targets, metabolic processing pathways, and drug resistance mechanisms. CTRP measurements were performed over 16-point concentration ranges in duplicate using automated high-throughput workflows, with cellular ATP levels assessed 72 hours after compound treatment as a surrogate for viability. The portal provides interactive tools for exploring clustering by small molecule and cell line, enrichment analyses for annotations, correlations to copy-number and gene-expression data, on-the-fly correlation analysis, box-whisker visualizations, drill-down to scatter plots and concentration-response curves, and filtering by lineage, subtype, or growth mode. CTRP enables correlation of chemical sensitivity with basal gene expression to reveal direct target connections, target pathway relationships, metabolic activation mechanisms, small-molecule import and export mechanisms, and novel therapeutic targets, supporting the identification of predictive biomarkers for patient-matched therapeutics and the systematic characterization of small-molecule mechanisms of action." ; dcterms:identifier "ctrp" ; dcterms:isReferencedBy , , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:cellminer.cellminercdb, kgr:ctrp.data, kgr:ctrp.portal, kgr:molepro.api, kgr:molepro.catalog, kgr:molepro.graph.edges, kgr:molepro.graph.nodes, kgr:molepro.trapi, kgr:pharmacodb.api, kgr:pharmacodb.documentation, kgr:pharmacodb.portal ; schema1:identifier "ctrp" ; schema1:name "Cancer Therapeutics Response Portal" ; skos:altLabel "CTRP", "Cancer Therapeutics Response Portal" ; skos:inScheme "biomedical", "cancer", "drug discovery", "high-throughput screening", "pharmacology" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:broad . kgr:culture-knowledge-graph a schema1:KnowledgeGraph ; rdfs:label "Culture Knowledge Graph" ; dcterms:created "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Culture Knowledge Graph (CKG) is the integrating linked open data graph of NFDI4Culture, the German National Research Data Infrastructure consortium for research data on material and immaterial cultural heritage. It acts as a single point of access, or data index, over decentralized research data collections, repositories, portals, software tools, infrastructures, and services across the NFDI4Culture subject areas of architecture, art history, media studies, musicology, and the performing arts. Beyond describing the consortium and its infrastructure, the graph indexes the content of contributed research data, including cultural heritage objects, persons, locations, and events, along with references to the external vocabularies used to identify and classify them, and access and reuse information such as legal statements, contact persons, and export formats. Contributing institutions supply metadata in the Culture Graph Interchange Format (CGIF), which is harvested through a dedicated ETL pipeline and integrated into the graph. The NFDI4Culture Ontology (CTO), a domain module of the NFDIcore mid-level ontology aligned with Basic Formal Ontology (BFO) 2020, provides the semantic backbone. The graph is reported to hold roughly 106 million RDF triples and is queryable through a public SPARQL endpoint." ; dcterms:identifier "culture-knowledge-graph" ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:culture-knowledge-graph.cgif, kgr:culture-knowledge-graph.cto, kgr:culture-knowledge-graph.cto-documentation, kgr:culture-knowledge-graph.data-search, kgr:culture-knowledge-graph.documentation, kgr:culture-knowledge-graph.dump, kgr:culture-knowledge-graph.sparql ; schema1:name "Culture Knowledge Graph" ; doap:repository ; skos:altLabel "CKG", "NFDI4Culture Knowledge Graph" ; skos:inScheme "humanities and cultural heritage" ; adms:status "Active" ; foaf:homepage . kgr:cureid a schema1:DataSource ; rdfs:label "CURE ID" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "CURE ID is a crowdsourcing platform and mobile/web app developed by the U.S. National Center for Advancing Translational Sciences (NCATS) at NIH in collaboration with the U.S. Food and Drug Administration (FDA). It allows clinicians around the world to report and share real-world clinical experiences treating difficult-to-treat and rare diseases, with an emphasis on novel uses of existing (off-label) drugs. The collected case reports and treatment outcomes form a repository intended to surface promising therapies and inform clinical research. CURE ID serves as an upstream ingest source for the Monarch/SRI Reference Knowledge Graph." ; dcterms:identifier "cureid" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cureid.about, kgr:cureid.app, kgr:cureid.explore, kgr:sri-reference-kg.graph ; schema1:name "CURE ID" ; skos:inScheme "clinical", "drug discovery", "drug repositioning", "public health" ; adms:status "Active" ; foaf:homepage . kgr:cvdo a schema1:Ontology ; rdfs:label "Cardiovascular Disease Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology to describe entities related to cardiovascular diseases" ; dcterms:identifier "cvdo" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cvdo.kg-bioportal, kgr:cvdo.owl ; schema1:name "Cardiovascular Disease Ontology" ; doap:repository ; skos:inScheme "biomedical", "cardiovascular disease" ; adms:status "Active" ; foaf:homepage . kgr:cvx a schema1:DataSource ; rdfs:label "Vaccine Administered Code Set (CVX)" ; dcterms:created "2026-02-26T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "CVX is the vaccine administered code set maintained by the Centers for Disease Control and Prevention for Immunization Information Systems (IIS). It provides identifiers for vaccine products and historical vaccine administrations used in immunization records, exchange standards, and public health reporting." ; dcterms:identifier "cvx" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cvx.docs, kgr:obo-db-ingest.cvx.json, kgr:obo-db-ingest.cvx.obo, kgr:obo-db-ingest.cvx.owl, kgr:obo-db-ingest.cvx.sssom.tsv, kgr:obo-db-ingest.cvx.tsv ; schema1:name "Vaccine Administered Code Set (CVX)" ; skos:inScheme "biomedical", "clinical", "clinical coding", "immunology", "public health", "vaccines" ; adms:status "Active" ; foaf:homepage . kgr:cytoscape a schema1:DataSource ; rdfs:label "Cytoscape" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Cytoscape is an open-source platform for visualizing, analyzing, and integrating complex networks with biological and other attribute data." ; dcterms:identifier "cytoscape" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cytoscape.app-store, kgr:cytoscape.automation-api, kgr:cytoscape.desktop, kgr:genemania.cytoscape-app ; schema1:name "Cytoscape" ; doap:repository ; skos:inScheme "information technology", "pathways" ; adms:status "Active" ; foaf:homepage . kgr:dailymed a schema1:DataSource ; rdfs:label "DailyMed" ; dcterms:created "2025-11-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "DailyMed is the National Library of Medicine's official provider of FDA drug label information, offering a searchable database of the most recent labeling submitted to the Food and Drug Administration by pharmaceutical companies and currently in use. As a comprehensive public resource providing over 154,000 drug labels, DailyMed contains labeling for prescription and nonprescription drugs for both human and animal use, as well as additional products including medical gases, devices, cosmetics, dietary supplements, and medical foods. All labeling information is formatted in Structured Product Labeling (SPL), an HL7 standard that provides a standardized, machine-readable format for drug product information enabling interoperability between healthcare systems. DailyMed serves as the authoritative source for current package inserts, medication guides, patient information sheets, and prescribing information directly as submitted by manufacturers to the FDA. The database is updated daily as new labeling is submitted and approved, ensuring users have access to the most current drug safety and efficacy information available. DailyMed provides detailed information including indications and usage, dosage and administration, contraindications, warnings and precautions, adverse reactions, drug interactions, use in specific populations, clinical pharmacology, and how the drug is supplied." ; dcterms:identifier "dailymed" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:dailymed.mapping_files, kgr:dailymed.rss_feeds, kgr:dailymed.spl_files, kgr:dailymed.web_services, kgr:dailymed.website, kgr:labeledin.indications, kgr:med-rt.core_dts, kgr:med-rt.core_spl, kgr:med-rt.core_xml, kgr:medi.drug_list_flexible, kgr:medi.drug_list_stringent, kgr:medi.github, kgr:medi.matrix_indication_list, kgr:multiomics-kp.graph ; schema1:identifier "dailymed" ; schema1:name "DailyMed" ; skos:inScheme "biomedical", "clinical", "pharmacology" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ncbi . kgr:darkkinasekb a schema1:DataSource ; rdfs:label "Dark Kinase Knowledgebase" ; dcterms:created "2025-11-13T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Dark Kinase Knowledgebase (DKK) is a comprehensive resource focused on providing data and reagents for 162 poorly studied or 'dark' kinases to the broader research community. Supported through NIH's Illuminating the Druggable Genome (IDG) Program, the DKK collects and disseminates experimental and computational data that provides functional context for understudied kinases, including parallel reaction monitoring peptides, protein interactions, NanoBRET reagents, kinase-specific compounds, tissue expression profiles, and functional relationships." ; dcterms:identifier "darkkinasekb" ; dcterms:isReferencedBy ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:darkkinasekb.compounds, kgr:darkkinasekb.expression, kgr:darkkinasekb.github, kgr:darkkinasekb.interactions, kgr:darkkinasekb.portal, kgr:darkkinasekb.prm, kgr:darkkinasekb.synapse, kgr:kinace.portal ; schema1:identifier "darkkinasekb" ; schema1:name "Dark Kinase Knowledgebase" ; skos:altLabel "DKK" ; skos:inScheme "genomics", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:darwins-ark a schema1:DataSource ; rdfs:label "Darwin's Ark" ; dcterms:created "2026-08-12T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A community science project collecting owner-reported behavioral and physical survey data alongside whole genome sequence data for pet dogs, and releasing the combined dataset openly." ; dcterms:identifier "darwins-ark" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:canvas.imputed, kgr:darwins-ark.genotypes, kgr:darwins-ark.surveys, kgr:darwins-ark.website, kgr:sniff.atlas-vcf ; schema1:name "Darwin's Ark" ; doap:repository ; skos:altLabel "Darwin's Dogs" ; skos:inScheme "domestic animals", "genetic variation", "genomics", "organisms", "phenotype" ; adms:status "Active" ; foaf:homepage . kgr:date a schema1:DataSource ; rdfs:label "Drugs to target pAthways by the Tissue Expression" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "DATE (Drugs to target pAthways by the Tissue Expression) is a dataset from the Tatonetti lab connecting 1,034 drugs to 954 Reactome pathways in 259 human tissues and cell lines. It combines DrugBank drug-target pairs with tissue expression from GTEx, the GNF U133A gene atlas, the NCI-60 cell lines and the Human Proteome Map. It has not been updated since 2018." ; dcterms:identifier "date" ; dcterms:isReferencedBy ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:date.archive ; schema1:identifier "date" ; schema1:name "Drugs to target pAthways by the Tissue Expression" ; skos:altLabel "DATE" ; skos:inScheme "pharmacology", "systems biology" ; adms:status "Inactive" ; foaf:homepage . kgr:dbgap a schema1:DataSource ; rdfs:label "dbGaP" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The database of Genotypes and Phenotypes (dbGaP) is NCBI's archive for data and results from studies of the interaction of genotype and phenotype in humans, including genome-wide association studies, medical sequencing, molecular diagnostic assays and associations between genotype and non-clinical traits. Study descriptions, protocols, data dictionaries and summary-level variable statistics are public, while individual-level genotype and phenotype data are distributed through controlled access under data use limitations set by each study. When checked on 2026-10-04 the public FTP site held study directories for 3,322 phs accessions." ; dcterms:identifier "dbgap" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:biodata-catalyst.analysis-platforms, kgr:biodata-catalyst.gen3, kgr:biodata-catalyst.picsure, kgr:biodata-catalyst.picsure-api, kgr:dbgap.advanced-search, kgr:dbgap.authorized-access, kgr:dbgap.fhir-api, kgr:dbgap.ftp, kgr:dbgap.gwas-analysis, kgr:dbgap.portal, kgr:dbgap.sstr-api, kgr:dbgap.submission-guide, kgr:gtex.dbgap-data, kgr:omicsdi.api, kgr:omicsdi.portal ; schema1:name "dbGaP" ; skos:altLabel "NCBI dbGaP", "database of Genotypes and Phenotypes" ; skos:inScheme "biomedical", "clinical", "genetic variation", "genome-wide association studies", "genomics" ; skos:notation "FAIRsharing.88v2k0" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ncbi . kgr:dbnsfp a schema1:Aggregator ; rdfs:label "dbNSFP" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "dbNSFP is a database of functional predictions and annotations for all potential non-synonymous single-nucleotide variants (nsSNVs) and splice-site SNVs (ssSNVs) in the human genome. It compiles deleteriousness prediction scores from 37 algorithms (including SIFT, PolyPhen-2, CADD, REVEL, AlphaMissense and its own ensemble scores MetaSVM, MetaLR and MetaRNN), evolutionary conservation scores, allele frequencies from population sequencing projects, ClinVar classifications and extensive gene-level annotations. Release 5.4 (August 2026) is based on GENCODE release 50 / Ensembl 116 and covers 86,701,498 nsSNVs and 2,582,202 ssSNVs. It is distributed in an academic branch (free for non-commercial use under CC BY-NC-ND 4.0, with registration) and a commercial branch (paid license) that omits components whose authors restrict commercial use." ; dcterms:hasVersion "5.4" ; dcterms:identifier "dbnsfp" ; dcterms:isReferencedBy , , ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:dbnsfp.academic, kgr:dbnsfp.academic-portal, kgr:dbnsfp.browser, kgr:dbnsfp.commercial, kgr:dbnsfp.dbscsnv, kgr:dbnsfp.legacy, kgr:dbnsfp.readme, kgr:dbnsfp.variant-columns, kgr:myvariant.api ; schema1:name "dbNSFP" ; doap:repository ; skos:altLabel "database of human non-synonymous SNVs and their functional predictions" ; skos:inScheme "biomedical", "genetic variation", "genomics", "precision medicine" ; adms:status "Active" ; foaf:homepage . kgr:dbpedia a schema1:KnowledgeGraph ; rdfs:label "DBpedia" ; dcterms:created "2026-03-11T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "DBpedia is a community knowledge graph published as RDF and built from structured content extracted from Wikipedia and related Wikimedia data. It is accessible through linked data URIs, a public SPARQL endpoint, and continuously updated releases distributed through the DBpedia Databus." ; dcterms:identifier "dbpedia" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-05-30T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:dbpedia.latest-core, kgr:dbpedia.ontology, kgr:dbpedia.portal, kgr:dbpedia.sparql ; schema1:name "DBpedia" ; doap:repository ; skos:altLabel "DBpedia" ; skos:inScheme "general" ; adms:status "Active" ; foaf:homepage . kgr:dbptm a schema1:DataSource ; rdfs:label "dbPTM" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "dbPTM is an integrated protein post-translational modification resource that curates experimentally verified PTM sites, literature evidence, proteomic datasets, regulatory networks, and disease-associated PTM annotations." ; dcterms:identifier "dbptm" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , ; schema1:hasPart kgr:dbptm.downloads, kgr:dbptm.portal, kgr:iptmnet.ptm ; schema1:name "dbPTM" ; skos:inScheme "biomedical", "post-translational modification", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:dbsno a schema1:DataSource ; rdfs:label "dbSNO" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "dbSNO is a protein S-nitrosylation database that curates experimentally verified S-nitrosylated proteins and cysteine sites with structural, functional, disease, and regulatory network annotations." ; dcterms:identifier "dbsno" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , ; schema1:hasPart kgr:dbsno.downloads, kgr:dbsno.portal, kgr:iptmnet.ptm ; schema1:name "dbSNO" ; skos:inScheme "biomedical", "post-translational modification", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:dbsnp a schema1:DataSource ; rdfs:label "dbSNP" ; dcterms:created "2025-05-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "dbSNP contains human single nucleotide variations, microsatellites, and small-scale insertions and deletions along with publication, population frequency, molecular consequence, and genomic and RefSeq mapping information for both common variations and clinical mutations." ; dcterms:identifier "dbsnp" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:biomarker.bkg.edges.variant, kgr:biomarker.bkg.nodes.variant, kgr:dbnsfp.academic, kgr:dbnsfp.commercial, kgr:dbsnp.api, kgr:dbsnp.json, kgr:dbsnp.site, kgr:dbsnp.variation.api, kgr:eva.rs-releases, kgr:genecards.variant.data, kgr:genecards.web.interface, kgr:litvar.api, kgr:litvar.web_interface, kgr:markerdb.api, kgr:markerdb.sequence_variants.tsv, kgr:myvariant.api, kgr:pavs-kg.api, kgr:pavs-kg.phenopackets, kgr:pavs-kg.portal, kgr:pavs-kg.sparql, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:pubchem.substances.asn, kgr:pubchem.substances.sdf, kgr:rna-kg.kg.edges, kgr:rna-kg.kg.neo4j, kgr:rna-kg.kg.nodes, kgr:service-kp.trapi, kgr:togows.rest-api ; schema1:identifier "dbsnp" ; schema1:name "dbSNP" ; doap:repository ; skos:inScheme "biomedical", "genetic variation", "genomics" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ncbi . kgr:dbsuper a schema1:DataSource ; rdfs:label "dbSUPER" ; dcterms:created "2026-06-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "dbSUPER is an integrated and interactive database of super-enhancers in mouse and human genomes. It provides a centralized resource of super-enhancer regions with associated genes, cell and tissue types, and supporting genomic data to assist studies of transcriptional control of cell identity and disease." ; dcterms:identifier "dbsuper" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:dbsuper.downloads, kgr:dbsuper.site, kgr:genecards.web.interface, kgr:genomickb.graph ; schema1:name "dbSUPER" ; skos:inScheme "gene regulation", "genomics", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:dbvar a schema1:DataSource ; rdfs:label "dbVar" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "dbVar is NCBI's public archive of human genomic structural variation, covering large-scale variants such as insertions, deletions, duplications, inversions, copy number variants (CNVs), and translocations. It aggregates submitted structural variant calls together with their genomic placements, supporting evidence, and associated clinical assertions, and exchanges data with the European DGVa archive. dbVar provides a web portal for searching and browsing variants and regions, as well as bulk FTP downloads of variant call and region files in multiple formats. It serves as an upstream source for integrative knowledge graphs such as GenomicKB." ; dcterms:identifier "dbvar" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:dbvar.ftp, kgr:dbvar.portal, kgr:genomickb.graph ; schema1:name "dbVar" ; skos:inScheme "biomedical", "clinical", "genetic variation", "genomics" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ncbi . kgr:dc a schema1:DataModel ; rdfs:label "Dublin Core Metadata Terms" ; dcterms:created "2025-06-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Dublin Core Metadata Initiative (DCMI) Metadata Terms is an authoritative specification of metadata terms for resource description. It includes the fifteen elements of the Dublin Core Metadata Element Set plus several dozen properties, classes, datatypes, and vocabulary encoding schemes. The terms are intended for use in combination with metadata terms from other vocabularies in application profiles. DCMI metadata terms are expressed in RDF vocabularies for use in Linked Data and are published as ISO standards (ISO 15836-1:2017 for the original 15 elements, ISO 15836-2:2019 for extended terms)." ; dcterms:identifier "dc" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:dc.classes, kgr:dc.dcmitype_rdf, kgr:dc.elements_rdf, kgr:dc.elements_spec, kgr:dc.encoding_schemes, kgr:dc.kg-bioportal, kgr:dc.terms_rdf, kgr:dc.terms_spec, kgr:edam.csv, kgr:edam.owl, kgr:edam.tsv, kgr:efo.obo, kgr:efo.owl, kgr:forum.graph.dump ; schema1:name "Dublin Core Metadata Terms" ; doap:repository ; skos:inScheme "information technology", "literature", "metadata" ; adms:status "Active" ; foaf:homepage . kgr:dc_cl a schema1:Ontology ; rdfs:label "Dendritic cell" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Description unavailable." ; dcterms:identifier "dc_cl" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:dc_cl.owl ; schema1:name "Dendritic cell" ; skos:inScheme "anatomy and development", "biological systems", "cell biology", "immunology" ; adms:status "Inactive" ; foaf:homepage . kgr:dcat a schema1:DataModel ; rdfs:label "Data Catalog Vocabulary" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Data Catalog Vocabulary (DCAT) is a W3C RDF vocabulary designed to support interoperability between data catalogs published on the Web." ; dcterms:identifier "dcat" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:dcat.kg-bioportal, kgr:dcat.spec, kgr:dcat.ttl, kgr:metabokg.graph, kgr:metabokg.schema ; schema1:name "Data Catalog Vocabulary" ; skos:altLabel "DCAT" ; skos:inScheme "general", "information technology", "metadata" ; adms:status "Active" ; foaf:homepage . kgr:dcdb a schema1:DataSource ; rdfs:label "Drug Combination Database" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "DCDB (Drug Combination Database) was a curated database of drug combinations and their components, developed at Zhejiang University. It catalogued combinations along with their individual drugs, molecular targets, mechanisms, and therapeutic indications to support pharmacology and drug discovery research. The resource served as an upstream source for downstream pharmacological knowledge graphs such as PharmDB. The original host site no longer serves the database and the project is now defunct." ; dcterms:identifier "dcdb" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-08T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:dcdb.publication, kgr:pharmdb.graph ; schema1:name "Drug Combination Database" ; skos:inScheme "clinical", "drug discovery", "pharmacology" ; adms:status "Inactive" ; foaf:homepage . kgr:dct a schema1:Ontology ; rdfs:label "Dublin Core Terms" ; dcterms:created "2025-06-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Dublin Core Metadata Terms (DCT) is a vocabulary of standardized metadata elements for describing resources, providing interoperable metadata standards for resource discovery across digital libraries and information systems." ; dcterms:identifier "dct" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:dct.kg-bioportal, kgr:dct.rdf, kgr:dct.spec, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:name "Dublin Core Terms" ; skos:altLabel "DCMI Terms", "DCT", "Dublin Core", "Dublin Core Metadata Initiative" ; skos:inScheme "information technology", "literature", "metadata" ; adms:status "Active" ; foaf:homepage . kgr:ddanat a schema1:Ontology ; rdfs:label "Dictyostelium discoideum anatomy" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A structured controlled vocabulary of the anatomy of the slime-mold Dictyostelium discoideum" ; dcterms:identifier "ddanat" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:ddanat.kg-bioportal, kgr:ddanat.obo, kgr:ddanat.owl, kgr:sri-reference-kg.graph ; schema1:identifier "dda" ; schema1:name "Dictyostelium discoideum anatomy" ; doap:repository ; skos:inScheme "anatomy and development" ; adms:status "Active" ; foaf:homepage . kgr:ddbj a schema1:DataSource ; rdfs:label "DNA Data Bank of Japan (DDBJ)" ; dcterms:created "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The DNA Data Bank of Japan (DDBJ), run by the Bioinformation and DDBJ Center (BioData Science Initiative) of the National Institute of Genetics in Mishima, Japan, is one of the three members of the International Nucleotide Sequence Database Collaboration (INSDC), together with NCBI GenBank and EMBL-EBI ENA. It collects, archives and exchanges annotated nucleotide sequences (DDBJ), raw sequencing reads (DDBJ Sequence Read Archive, DRA), BioProject and BioSample metadata, and controlled-access human genotype and phenotype data (Japanese Genotype-phenotype Archive, JGA)." ; dcterms:identifier "ddbj" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ddbj.arsa, kgr:ddbj.bioproject, kgr:ddbj.biosample, kgr:ddbj.docs, kgr:ddbj.dra, kgr:ddbj.getentry, kgr:ddbj.jga, kgr:ddbj.portal, kgr:ddbj.rdf, kgr:ddbj.release, kgr:ddbj.search, kgr:rdf-portal.sparql.ddbj, kgr:togows.rest-api ; schema1:name "DNA Data Bank of Japan (DDBJ)" ; skos:altLabel "DDBJ", "DNA Data Bank of Japan" ; skos:inScheme "genomics" ; adms:status "Active" ; foaf:homepage . kgr:ddinter a schema1:DataSource ; rdfs:label "DDinter" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "DDInter is an open-access database specific to drug-drug interactions (DDIs) with comprehensive annotations including mechanism descriptions, risk levels, management strategies, and alternative medications to improve clinical decision-making and patient safety." ; dcterms:identifier "ddinter" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:ddinter.ddi_annotations, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:service-kp.trapi ; schema1:identifier "ddinter" ; schema1:name "DDinter" ; skos:altLabel "DDInter" ; skos:inScheme "biomedical", "clinical", "drug discovery", "drug interactions", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:ddpheno a schema1:Ontology ; rdfs:label "Dictyostelium discoideum phenotype ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A structured controlled vocabulary of phenotypes of the slime-mould Dictyostelium discoideum." ; dcterms:identifier "ddpheno" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:ddpheno.kg-bioportal, kgr:ddpheno.obo, kgr:ddpheno.owl, kgr:sri-reference-kg.graph ; schema1:identifier "ddpheno" ; schema1:name "Dictyostelium discoideum phenotype ontology" ; doap:repository ; skos:inScheme "anatomy and development" ; adms:status "Active" ; foaf:homepage . kgr:decipher a schema1:DataSource ; rdfs:label "DECIPHER" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "DECIPHER (DatabasE of genomiC varIation and Phenotype in Humans using Ensembl Resources) is a web-based platform, hosted at the Wellcome Sanger Institute, that aggregates and shares anonymized clinical and genomic data on submicroscopic chromosomal imbalances and other genomic variants in patients with rare developmental and genetic disorders. It links genomic variants to associated phenotypes (using Human Phenotype Ontology terms) to support interpretation of variant pathogenicity and clinical diagnosis. DECIPHER integrates Ensembl genome resources and an international consortium of clinical genetics centers. It is an upstream data source for the SRI-Reference Knowledge Graph and the Monarch Initiative." ; dcterms:identifier "decipher" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:decipher.downloads, kgr:decipher.web, kgr:sri-reference-kg.graph ; schema1:name "DECIPHER" ; skos:inScheme "biomedical", "clinical", "genetic variation", "genomics", "phenotype", "precision medicine", "rare disease" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:wellcome-sanger-institute . kgr:depmap a schema1:DataSource ; rdfs:label "DepMap" ; dcterms:created "2025-10-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Cancer Dependency Map (DepMap) is a genome-wide pooled CRISPR-Cas9 knockout and small molecule screen of cancer cell lines. The goal of DepMap is to systematically identify cancer dependencies and the biomarkers that predict them. DepMap provides open access to key cancer dependencies, analytical tools, and visualization resources for the research community." ; dcterms:identifier "depmap" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:achilles.downloads, kgr:bioteque.embeddings, kgr:cellmodelpassports.crispr_fitness_scores, kgr:cellmodelpassports.model_list, kgr:cellmodelpassports.rnaseq_merged, kgr:depmap.api, kgr:depmap.cell_line_info, kgr:depmap.cell_line_selector, kgr:depmap.context_explorer, kgr:depmap.copy_number, kgr:depmap.crispr_gene_effects, kgr:depmap.data_explorer, kgr:depmap.downloads, kgr:depmap.drug_sensitivity, kgr:depmap.expression_data, kgr:depmap.metabolomics, kgr:depmap.mutations, kgr:depmap.portal, kgr:depmap.proteomics, kgr:depmap.target_discovery, kgr:enrichr-kg.graph, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:molepro.api, kgr:molepro.catalog, kgr:molepro.graph.edges, kgr:molepro.graph.nodes, kgr:molepro.trapi, kgr:obo-db-ingest.depmap.json, kgr:obo-db-ingest.depmap.obo, kgr:obo-db-ingest.depmap.owl, kgr:obo-db-ingest.depmap.sssom.tsv, kgr:obo-db-ingest.depmap.tsv, kgr:prism.datasets, kgr:prism.primary_screen_lfc, kgr:prism.secondary_screen_dose_response ; schema1:identifier "depmap" ; schema1:name "DepMap" ; doap:repository ; skos:inScheme "biomedical", "cancer", "drug discovery", "genomics", "high-throughput screening", "precision medicine" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:broad . kgr:dgidb a schema1:DataSource ; rdfs:label "DGIdb" ; dcterms:created "2025-05-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Drug Gene Interaction Database (DGIdb) is a resource that consolidates disparate data sources describing drug-gene interactions and gene druggability to help researchers identify actionable drug targets or repurposable drugs for genes of interest." ; dcterms:identifier "dgidb" ; dcterms:isReferencedBy , , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cancer-genome-interpreter.clinicalkg.graph, kgr:clinicalkg.graph, kgr:dgidb.api, kgr:drkg.graph, kgr:genecards.web.interface, kgr:molepro.api, kgr:molepro.catalog, kgr:molepro.graph.edges, kgr:molepro.graph.nodes, kgr:molepro.trapi, kgr:pubchem.substances.asn, kgr:pubchem.substances.sdf, kgr:rtx-kg2.graph.edges, kgr:rtx-kg2.graph.nodes, kgr:rtx-kg2.neo4j, kgr:service-kp.trapi, kgr:translator.dgidb.graph, kgr:translator.translator_kg.graph ; schema1:identifier "dgidb" ; schema1:name "DGIdb" ; doap:repository ; skos:inScheme "biomedical", "drug discovery", "drug repositioning", "genomics", "pharmacology", "precision medicine" ; adms:status "Active" ; foaf:homepage . kgr:dgv a schema1:DataSource ; rdfs:label "Database of Genomic Variants" ; dcterms:created "2026-06-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Database of Genomic Variants (DGV) provides a curated catalogue of structural variation in the genomes of control individuals from healthy populations. It compiles copy-number variants, insertions, deletions, inversions, and other structural variants reported in the literature to provide a reference for studies of genomic disorders." ; dcterms:identifier "dgv" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:dgv.downloads, kgr:dgv.site, kgr:genecards.web.interface, kgr:genomickb.graph ; schema1:name "Database of Genomic Variants" ; skos:inScheme "clinical", "genetic variation", "genomics", "population genetics" ; adms:status "Active" ; foaf:homepage . kgr:dictybase a schema1:DataSource ; rdfs:label "dictyBase" ; dcterms:created "2025-08-13T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "dictyBase is a comprehensive genomic database for the social amoeba Dictyostelium discoideum and related species. It provides genomic, phenotypic, and molecular data including gene annotations, protein sequences, expression data, phenotypes, literature, and community annotations. The database serves as the central resource for Dictyostelium researchers worldwide." ; dcterms:identifier "dictybase" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:babel.compendia, kgr:dictybase.annotations.gff, kgr:dictybase.genome.browser, kgr:dictybase.genome.fasta, kgr:dictybase.graphql.api, kgr:dictybase.proteins.fasta, kgr:kg-alzheimers.graph, kgr:kg-monarch.graph, kgr:kg-monarch.graph.duckdb, kgr:kg-monarch.graph.jsonl, kgr:kg-monarch.graph.jsonl.edges, kgr:kg-monarch.graph.jsonl.nodes, kgr:kg-monarch.graph.neo4j, kgr:kg-monarch.graph.neo4j.edges, kgr:kg-monarch.graph.neo4j.nodes, kgr:kg-monarch.graph.rdf, kgr:neo.model, kgr:neo.obo, kgr:obo-db-ingest.dictybase.gene.json, kgr:obo-db-ingest.dictybase.gene.obo, kgr:obo-db-ingest.dictybase.gene.owl, kgr:obo-db-ingest.dictybase.gene.tsv, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db, kgr:sri-reference-kg.graph ; schema1:identifier "dictybase" ; schema1:name "dictyBase" ; doap:repository ; skos:inScheme "genomics", "model organisms", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:dideo a schema1:Ontology ; rdfs:label "Drug-drug Interaction and Drug-drug Interaction Evidence Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Potential Drug-drug Interaction and Potential Drug-drug Interaction Evidence Ontology" ; dcterms:identifier "dideo" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:dideo.kg-bioportal, kgr:dideo.owl, kgr:np-kg.graph.networkx, kgr:np-kg.graph.tsv ; schema1:name "Drug-drug Interaction and Drug-drug Interaction Evidence Ontology" ; doap:repository ; skos:inScheme "chemistry and biochemistry", "drug interactions", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:digcfdekg a schema1:KnowledgeGraph ; rdfs:label "CFDE REVEAL Knowledge Graph" ; dcterms:created "2026-05-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The CFDE REVEAL Knowledge Graph is a statistically inferred genomic evidence graph to integrate and disseminate knowledge within the Common Fund Data Ecosystem (CFDE)." ; dcterms:identifier "digcfdekg" ; dcterms:license ; dcterms:modified "2026-07-01T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:digcfdekg.graph, kgr:digcfdekg.portal ; schema1:name "CFDE REVEAL Knowledge Graph" ; skos:inScheme "biomedical", "genomics", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:dinto a schema1:Ontology ; rdfs:label "The Drug-Drug Interactions Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A formal represention for drug-drug interactions knowledge." ; dcterms:identifier "dinto" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:dinto.owl ; schema1:name "The Drug-Drug Interactions Ontology" ; doap:repository ; skos:inScheme "biomedical", "drug interactions", "pharmacology" ; adms:status "Inactive" ; foaf:homepage . kgr:dip a schema1:DataSource ; rdfs:label "Database of Interacting Proteins" ; dcterms:created "2025-11-10T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Database of Interacting Proteins (DIP) is a curated biological database that catalogs experimentally determined interactions between proteins, developed and maintained by the research group of David Eisenberg at the University of California Los Angeles (UCLA). Established in 2002, DIP combines information from diverse sources to create a unified, consistent set of protein-protein interactions with both manual expert curation and automated computational approaches that leverage knowledge extracted from the most reliable core subset of the data. DIP serves as a member of the International Molecular Exchange (IMEx) Consortium, an international collaboration of major public providers of protein interaction data including IntAct, MINT, BioGRID, and others that work together to avoid duplication of curation efforts by collecting data from non-overlapping sources and sharing curated interaction data. The database enables searches through its web interface based on multiple criteria including interactions described in specific journal articles, interactions supported by particular types of experimental evidence, and protein identifiers or sequences. DIP data have been curated using both manual approaches by expert biologists and automated computational methods that utilize machine learning and network analysis of the high-confidence core interaction data. The IMEx consortium developed the HUPO Proteomics Standards Initiative Molecular Interaction (HUPO-PSI-MI) XML format, which has become widely implemented for standardizing molecular interaction data representation. All information within DIP is freely available under a Creative Commons Attribution-NoDerivatives 3.0 license. DIP provides downloads of complete datasets and specialized subsets, supporting integration with other protein interaction databases and serving as a foundational resource for systems biology, network analysis, and protein function prediction studies." ; dcterms:identifier "dip" ; dcterms:isReferencedBy , , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:dip.downloads, kgr:dip.search, kgr:hippie.current.mitab, kgr:hippie.current.tab, kgr:hpidb.mitab, kgr:iid.human_annotated_ppis, kgr:iid.mouse_annotated_ppis, kgr:irefindex.database, kgr:pathwaycommons.biopax, kgr:pathwaycommons.downloads, kgr:pathwaycommons.gmt, kgr:pathwaycommons.sif, kgr:pathwaycommons.txt, kgr:pharmdb.graph, kgr:string.cog.links, kgr:string.cog.links.detailed, kgr:string.database, kgr:string.protein.links, kgr:string.protein.links.detailed, kgr:string.protein.links.full, kgr:string.protein.physical.links, kgr:string.protein.physical.links.detailed, kgr:string.protein.physical.links.full ; schema1:identifier "dip" ; schema1:name "Database of Interacting Proteins" ; skos:altLabel "DIP", "Database of Interacting Proteins" ; skos:inScheme "protein interactions", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:disbiome a schema1:DataSource ; rdfs:label "Disbiome" ; dcterms:created "2025-11-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Database of microbiome-disease associations, cataloging relationships between microbial taxa and human diseases based on experimental and clinical evidence." ; dcterms:identifier "disbiome" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , ; schema1:hasPart kgr:disbiome.api, kgr:disbiome.export, kgr:disbiome.portal, kgr:kg-microbe.graph.biomedical, kgr:kg-microbe.graph.biomedical-function, kgr:kg-microbe.graph.core, kgr:kg-microbe.graph.function, kgr:kg-microbe.graph.raw, kgr:micromap.api ; schema1:name "Disbiome" ; skos:altLabel "Disbiome", "Disbiome Database" ; skos:inScheme "biomedical", "clinical", "microbiology", "microbiome" ; adms:status "Active" ; foaf:homepage . kgr:disdriv a schema1:Ontology ; rdfs:label "Disease Drivers Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Ontology for drivers and triggers of human diseases, built to classify ExO ontology exposure stressors. An application ontology. Built in collaboration with EnvO, ExO, ECTO and ChEBI." ; dcterms:identifier "disdriv" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:disdriv.kg-bioportal, kgr:disdriv.owl ; schema1:name "Disease Drivers Ontology" ; doap:repository ; skos:inScheme "biomedical", "environment", "environmental exposure" ; adms:status "Active" ; foaf:homepage . kgr:diseases a schema1:Aggregator ; rdfs:label "DISEASES" ; dcterms:created "2025-06-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "DISEASES is a weekly updated database that integrates evidence on disease-gene associations from automatic text mining, manually curated literature, cancer mutation data, and genome-wide association studies. It provides confidence scores to facilitate comparison of different types and sources of evidence." ; dcterms:identifier "diseases" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:amyco.annotations, kgr:cancer-genome-interpreter.clinicalkg.graph, kgr:clinicalkg.graph, kgr:diseases.dictionary, kgr:diseases.experiments-filtered, kgr:diseases.experiments-full, kgr:diseases.integrated-full, kgr:diseases.knowledge-filtered, kgr:diseases.knowledge-full, kgr:diseases.portal, kgr:diseases.textmining-filtered, kgr:diseases.textmining-full, kgr:genecards.web.interface, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:kg-jensenlab-diseases.edges.kgx, kgr:kg-jensenlab-diseases.edges.trapi, kgr:kg-jensenlab-diseases.nodes.kgx, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:service-kp.trapi, kgr:spoke-okn.graph, kgr:spoke.graph, kgr:string.cog.links, kgr:string.cog.links.detailed, kgr:string.database, kgr:string.protein.links, kgr:string.protein.links.detailed, kgr:string.protein.links.full, kgr:string.protein.physical.links, kgr:string.protein.physical.links.detailed, kgr:string.protein.physical.links.full, kgr:translator.diseases.graph, kgr:translator.translator_kg.graph ; schema1:identifier "diseases" ; schema1:name "DISEASES" ; skos:altLabel "DISEASES Database", "JensenLab DISEASES" ; skos:inScheme "biomedical", "genomics", "literature", "natural language processing" ; adms:status "Active" ; foaf:homepage . kgr:disgenet a schema1:DataSource ; rdfs:label "DisGeNET" ; dcterms:created "2025-06-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "DisGeNET is the world's largest and most extensive gene-disease association (GDA) network, integrating data from expert-curated repositories, GWAS catalogs, animal models, and scientific literature. It contains gene-disease associations, variant-disease associations, and disease-disease associations with extensive evidence supporting each connection." ; dcterms:identifier "disgenet" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-01T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:alzkb.browser, kgr:alzkb.data, kgr:aop-db.data, kgr:bioteque.embeddings, kgr:cancer-genome-interpreter.clinicalkg.graph, kgr:cardiokg.neo4j, kgr:cfde-gse.genesets, kgr:cfde-gse.graph, kgr:clinicalkg.graph, kgr:disgenet.api, kgr:disgenet.browser, kgr:disgenet.data, kgr:enrichr-kg.graph, kgr:genecards.disease.associations, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:indra.cogex.code, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:pheknowlator.graph, kgr:primekg.graph, kgr:psygenet.genedisease, kgr:rtx-kg2.graph.edges, kgr:rtx-kg2.graph.nodes, kgr:rtx-kg2.neo4j, kgr:service-kp.trapi, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:identifier "disgenet" ; schema1:name "DisGeNET" ; skos:inScheme "biomedical", "clinical", "drug discovery", "genomics", "precision medicine" ; adms:status "Active" ; foaf:homepage . kgr:disprot a schema1:DataSource ; rdfs:label "DisProt" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "DisProt is a manually curated database of experimentally validated intrinsically disordered proteins (IDPs) and intrinsically disordered regions (IDRs), providing annotations for structural disorder and functional aspects of protein disorder." ; dcterms:identifier "disprot" ; dcterms:isReferencedBy , , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:disprot.api, kgr:disprot.browser, kgr:disprot.deposition, kgr:disprot.downloads, kgr:disprot.idpo ; schema1:identifier "disprot" ; schema1:name "DisProt" ; skos:inScheme "protein structure", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:dmd a schema1:DataSource ; rdfs:label "NHS dictionary of medicines and devices" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The NHS dictionary of medicines and devices is the national clinical vocabulary for identifying medicines and medical devices used across the NHS and for exchanging medicines information between clinical systems." ; dcterms:identifier "dmd" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:dmd.browser, kgr:dmd.raw-files, kgr:dmd.terminology-server, kgr:gemscript.bulletin, kgr:gemscript.documentation ; schema1:name "NHS dictionary of medicines and devices" ; skos:altLabel "Dictionary of Medicines and Devices", "dm+d", "dmd" ; skos:inScheme "biomedical", "clinical", "clinical coding", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:doaf a schema1:Ontology ; rdfs:label "Disease Ontology Annotation Framework" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Disease Ontology Annotation Framework (DOAF) was a semantic framework for representing and sharing disease annotations, enabling standardized disease ontology annotations across biomedical resources." ; dcterms:identifier "doaf" ; dcterms:isReferencedBy ; dcterms:modified "2026-06-12T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:doaf.framework-publication ; schema1:identifier "doaf" ; schema1:name "Disease Ontology Annotation Framework" ; skos:altLabel "DOAF", "Disease Ontology Annotation Framework" ; skos:inScheme "biomedical", "clinical" ; adms:status "Inactive" ; foaf:homepage . kgr:docm a schema1:DataSource ; rdfs:label "Database of Curated Mutations" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "DoCM (Database of Curated Mutations) was a highly curated database of known, disease-causing mutations in cancer, specifically focused on mutations with clinical or functional evidence. The project has been retired and succeeded by the Clinical Interpretation of Variants in Cancer (CIViC) knowledgebase. All DoCM data remains available in archived form." ; dcterms:identifier "docm" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:docm.data.sql, kgr:docm.variants.tsv, kgr:docm.variants.vcf, kgr:myvariant.api ; schema1:identifier "docm" ; schema1:name "Database of Curated Mutations" ; doap:repository ; skos:altLabel "DoCM" ; skos:inScheme "biomedical", "cancer", "genetic variation", "genomics", "precision medicine" ; adms:status "Inactive" ; foaf:homepage . kgr:doco a schema1:Ontology ; rdfs:label "Document Components Ontology (DOCO)" ; dcterms:created "2025-12-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "DOCO (Document Components Ontology) is an OWL ontology for describing the structural and rhetorical components of documents. It is part of the SPAR (Semantic Publishing and Referencing) Ontologies suite and provides a vocabulary for semantic annotation of document structure." ; dcterms:identifier "doco" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:doco.owl, kgr:openbiodiv.ontology.ttl ; schema1:name "Document Components Ontology (DOCO)" ; doap:repository ; skos:inScheme "literature", "scholarly communication" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:spar . kgr:dog10k a schema1:DataSource ; rdfs:label "Dog10K" ; dcterms:created "2026-08-12T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An international consortium sequencing canine genomes across breeds, village dogs, and wild canids, producing a reference catalogue of canine genetic variation that serves as an imputation reference panel." ; dcterms:identifier "dog10k" ; dcterms:isReferencedBy , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:canvas.imputed, kgr:dog10k.browser, kgr:dog10k.variants, kgr:dog10k.zenodo, kgr:sniff.atlas-vcf ; schema1:name "Dog10K" ; skos:inScheme "domestic animals", "genetic variation", "genomics", "organisms", "population genetics" ; adms:status "Active" ; foaf:homepage . kgr:doid a schema1:Ontology ; rdfs:label "Human Disease Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology for describing the classification of human diseases organized by etiology." ; dcterms:identifier "doid" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:alzkb.browser, kgr:alzkb.data, kgr:babel.compendia, kgr:biomarker.bkg.edges.condition, kgr:biomarker.bkg.nodes.condition, kgr:cam-kp.ctd-interactions, kgr:cancer-genome-interpreter.clinicalkg.graph, kgr:clinicalkg.graph, kgr:doid.kg-bioportal, kgr:doid.obo, kgr:doid.owl, kgr:drug-approvals-kp.graph.edges, kgr:drug-approvals-kp.graph.nodes, kgr:efo.obo, kgr:efo.owl, kgr:eram.downloads, kgr:eram.web, kgr:genecards.web.interface, kgr:hetionet.data.edges, kgr:hetionet.data.json, kgr:hetionet.data.neo4j, kgr:hetionet.data.nodes, kgr:hetionet.hetnetpy, kgr:hetionet.neo4j, kgr:hetionet.search, kgr:ibkh.graph, kgr:kg-jensenlab-diseases.edges.kgx, kgr:kg-jensenlab-diseases.edges.trapi, kgr:kg-jensenlab-diseases.nodes.kgx, kgr:klocd.portal, kgr:lncrnalyzr.graph, kgr:mechreponet.kg, kgr:medkg.site, kgr:mondo.sssom, kgr:mydisease.api, kgr:pharmacotherapydb.diseases, kgr:pharmacotherapydb.indications, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:rtx-kg2.graph.edges, kgr:rtx-kg2.graph.nodes, kgr:rtx-kg2.neo4j, kgr:service-kp.trapi, kgr:spoke-okn.graph, kgr:spoke.graph, kgr:sri-reference-kg.graph, kgr:ubkg.csv, kgr:ubkg.neo4j, kgr:unibiomap.disease_desc ; schema1:name "Human Disease Ontology" ; doap:repository ; skos:inScheme "biomedical" ; adms:status "Active" ; foaf:homepage . kgr:dolce a schema1:Ontology ; rdfs:label "DOLCE" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "DOLCE (Descriptive Ontology for Linguistic and Cognitive Engineering) is a foundational (upper-level) ontology developed and maintained by the Laboratory for Applied Ontology at ISTC-CNR. It distinguishes endurants, perdurants, qualities and abstracts, is axiomatized in first-order logic, and has been stable since its 2002/2003 release in the WonderWeb project. Since 2023 it is part 3 of the ISO/IEC 21838 standard for top-level ontologies, which ships OWL 2 and Common Logic axiomatizations. Lighter OWL re-engineerings, DOLCE-Lite and DOLCE+DnS Ultralite (DUL), are widely used to align domain ontologies." ; dcterms:identifier "dolce" ; dcterms:isReferencedBy ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:dolce.d18, kgr:dolce.dul, kgr:dolce.iso-clif, kgr:dolce.iso-owl, kgr:dolce.lite, kgr:dolce.lite-plus, kgr:dolce.overview, kgr:proton.ontology, kgr:proton.top ; schema1:name "DOLCE" ; skos:altLabel "DOLCE+DnS Ultralite", "DOLCE-Lite", "DUL", "Descriptive Ontology for Linguistic and Cognitive Engineering", "ISO/IEC 21838-3" ; skos:inScheme "general" ; adms:status "Active" ; foaf:homepage . kgr:dorothea a schema1:KnowledgeGraph ; rdfs:label "DoRothEA" ; dcterms:created "2025-09-11T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "DoRothEA is a curated resource of transcription factor (TF) – target gene (regulon) interactions with confidence scoring, enabling inference of TF activity from gene expression data. It integrates literature-curated interactions and various experimental evidence (e.g. ChIP-seq, TF binding motifs, perturbation data) to build context-agnostic and confidence-stratified regulons for multiple species. Frequently used with PROGENy to estimate pathway and TF activities." ; dcterms:identifier "dorothea" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , ; schema1:hasPart kgr:bioteque.embeddings, kgr:dorothea.docs, kgr:dorothea.graph, kgr:dorothea.r-package ; schema1:name "DoRothEA" ; doap:repository ; skos:inScheme "gene regulation", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:dpo a schema1:Ontology ; rdfs:label "Drosophila Phenotype Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology of commonly encountered and/or high level Drosophila phenotypes." ; dcterms:identifier "dpo" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:dpo.json, kgr:dpo.kg-bioportal, kgr:dpo.obo, kgr:dpo.owl, kgr:sri-reference-kg.graph ; schema1:name "Drosophila Phenotype Ontology" ; doap:repository ; skos:inScheme "insects", "organisms", "phenotype" ; adms:status "Active" ; foaf:homepage . kgr:dreamkg a schema1:KnowledgeGraph ; rdfs:label "DREAM-KG" ; dcterms:created "2025-12-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Develop Dynamic, REsponsive, Adaptive, and Multifaceted Knowledge Graphs to Address Homelessness With Explainable AI" ; dcterms:identifier "dreamkg" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:dreamkg.graph, kgr:dreamkg.sparql, kgr:dreamkg.tpf ; schema1:name "DREAM-KG" ; skos:inScheme "biomedical", "information technology", "machine learning", "public health", "social determinants of health" ; adms:status "Active" ; foaf:homepage . kgr:drkg a schema1:KnowledgeGraph ; rdfs:label "Drug Repurposing Knowledge Graph" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Drug Repurposing Knowledge Graph (DRKG) is a comprehensive biological knowledge graph relating genes, compounds, diseases, biological processes, side effects and symptoms." ; dcterms:identifier "drkg" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:drkg.graph, kgr:ibkh.graph ; schema1:name "Drug Repurposing Knowledge Graph" ; doap:repository ; skos:inScheme "biomedical", "drug discovery", "drug repositioning" ; adms:status "Active" ; foaf:homepage . kgr:dron a schema1:Ontology ; rdfs:label "The Drug Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology to support comparative effectiveness researchers studying claims data." ; dcterms:identifier "dron" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:dron.owl ; schema1:name "The Drug Ontology" ; doap:repository ; skos:inScheme "biomedical", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:drug-approvals-kp a schema1:KnowledgeGraph ; rdfs:label "Drug Approvals KP" ; dcterms:created "2025-04-22T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A Translator knowledge provider focused on drug approval status and other drug-related metadata." ; dcterms:identifier "drug-approvals-kp" ; dcterms:license ; dcterms:modified "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:drug-approvals-kp.code, kgr:drug-approvals-kp.graph.edges, kgr:drug-approvals-kp.graph.nodes, kgr:translator.dakp.graph, kgr:translator.translator_kg.graph ; schema1:name "Drug Approvals KP" ; doap:repository ; skos:inScheme "biomedical", "drug discovery", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:drugbank a schema1:DataSource ; rdfs:label "DrugBank" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "DrugBank Online is a comprehensive, publicly accessible database containing detailed information on drugs and drug targets, combining chemical, pharmacological, pharmaceutical data with drug target information including sequence, structure, and pathway details." ; dcterms:identifier "drugbank" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:alzkb.browser, kgr:alzkb.data, kgr:babel.compendia, kgr:bioteque.embeddings, kgr:cancer-genome-interpreter.clinicalkg.graph, kgr:cardiokg.neo4j, kgr:clinicalkg.graph, kgr:date.archive, kgr:drkg.graph, kgr:drugbank.academic, kgr:drugbank.clinical.api, kgr:drugbank.web, kgr:drugmechdb.graph, kgr:genecards.pharmacogenomics, kgr:genecards.web.interface, kgr:gp-kg.graph, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:hetionet.data.edges, kgr:hetionet.data.json, kgr:hetionet.data.neo4j, kgr:hetionet.data.nodes, kgr:hetionet.hetnetpy, kgr:hetionet.neo4j, kgr:hetionet.search, kgr:ibkh.graph, kgr:kg-predict.gpkg, kgr:klocd.portal, kgr:medkg.site, kgr:microbiomekg.api, kgr:molepro.api, kgr:molepro.catalog, kgr:molepro.graph.edges, kgr:molepro.graph.nodes, kgr:molepro.trapi, kgr:mps-db.portal, kgr:mychem.api, kgr:np-kg.graph.networkx, kgr:np-kg.graph.tsv, kgr:openpredict.api, kgr:openpredict.predictions, kgr:oregano.graph, kgr:pathwaycommons.biopax, kgr:pathwaycommons.downloads, kgr:pathwaycommons.gmt, kgr:pathwaycommons.sif, kgr:pathwaycommons.txt, kgr:pathwhiz.pathways, kgr:pharmacotherapydb.drugs, kgr:pharmacotherapydb.indications, kgr:pharmdb.graph, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:pharmkg.graph, kgr:predict.method, kgr:predict.supporting-information, kgr:primekg.graph, kgr:pubchem.substances.asn, kgr:pubchem.substances.sdf, kgr:redrugs.source, kgr:rtx-kg2.graph.edges, kgr:rtx-kg2.graph.nodes, kgr:rtx-kg2.neo4j, kgr:spoke-okn.graph, kgr:spoke.graph, kgr:stitch.api, kgr:stitch.downloads, kgr:stitch.portal, kgr:unibiomap.auxs, kgr:unibiomap.links, kgr:unibiomap.pred, kgr:unibiomap.pred.full ; schema1:identifier "drugbank" ; schema1:name "DrugBank" ; doap:repository ; skos:inScheme "biomedical", "chemistry and biochemistry", "genomics", "pharmacology", "proteomics" ; skos:related "biopragmatics", "core" ; adms:status "Active" ; foaf:homepage . kgr:drugcentral a schema1:DataSource ; rdfs:label "DrugCentral" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "DrugCentral is online drug information resource created and maintained by Division of Translational Informatics at University of New Mexico." ; dcterms:identifier "drugcentral" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:automat.drugcentral, kgr:automat.robokopkg, kgr:babel.compendia, kgr:bioteque.embeddings, kgr:drugcentral.data, kgr:drugmechdb.graph, kgr:hetionet.data.edges, kgr:hetionet.data.json, kgr:hetionet.data.neo4j, kgr:hetionet.data.nodes, kgr:hetionet.hetnetpy, kgr:hetionet.neo4j, kgr:hetionet.search, kgr:kg-covid-19.graph, kgr:kg-idg.graph, kgr:mind.entities, kgr:mind.relations, kgr:mind.test, kgr:mind.train, kgr:mind.valid, kgr:molepro.api, kgr:molepro.catalog, kgr:molepro.graph.edges, kgr:molepro.graph.nodes, kgr:molepro.trapi, kgr:multiomics-kp.graph, kgr:mychem.api, kgr:obo-db-ingest.drugcentral.json, kgr:obo-db-ingest.drugcentral.obo, kgr:obo-db-ingest.drugcentral.owl, kgr:obo-db-ingest.drugcentral.sssom.tsv, kgr:obo-db-ingest.drugcentral.tsv, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:primekg.graph, kgr:pubchem.substances.asn, kgr:pubchem.substances.sdf, kgr:repodb.full_dataset, kgr:rtx-kg2.graph.edges, kgr:rtx-kg2.graph.nodes, kgr:rtx-kg2.neo4j, kgr:service-kp.trapi, kgr:spoke-okn.graph, kgr:spoke.graph, kgr:tcrd.api, kgr:tcrd.database_download, kgr:tcrd.documentation, kgr:translator.dakp.graph, kgr:translator.drugcentral.graph, kgr:translator.translator_kg.graph ; schema1:identifier "drugcentral" ; schema1:name "DrugCentral" ; skos:inScheme "biomedical", "drug discovery", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:drugmechdb a schema1:KnowledgeGraph ; rdfs:label "DrugMechDB" ; dcterms:created "2025-08-12T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "DrugMechDB is a curated database that captures mechanistic paths from a drug to a disease within a given indication. Expert curators normalize concepts and relationships to standard biomedical identifiers and represent each indication as a directed path through a biological knowledge graph, suitable for computational analysis and benchmarking. Release 2.0.1 contains 4,846 curated paths covering 4,664 drug-disease indications, with 32,641 edges. Indications were sampled from DrugCentral, and paths were derived from descriptions in DrugBank, Wikipedia and the literature." ; dcterms:identifier "drugmechdb" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:automat.robokopkg, kgr:drugmechdb.graph, kgr:drugmechdb.web ; schema1:identifier "drugmechdb" ; schema1:name "DrugMechDB" ; doap:repository ; skos:inScheme "biomedical", "drug discovery", "literature", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:dsstoxdb a schema1:DataSource ; rdfs:label "Distributed Structure-Searchable Toxicity (DSSTox) Database" ; dcterms:created "2025-11-19T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "EPA's Distributed Structure-Searchable Toxicity (DSSTox) database provides high-quality chemical and chemistry data underpinning several publicly available computational toxicology applications. DSSTox contains curated chemical substances mapped to chemical identifiers including CAS Registry Numbers, IUPAC names, SMILES, and InChIKeys. The database currently exceeds 1.2 million substances which includes chemical lists of interest to EPA, other federal agencies, states, tribes, industry and stakeholder groups. DSSTox provides accurate linkages of chemical structures to source substance identifiers, allowing high-quality association of chemicals to existing toxicity data, bioactivity data, experimental chemical property data and enabling structure-based predictive modeling. The database supports the CompTox Chemicals Dashboard, EcoTox Knowledgebase, Chemical Exposure Knowledgebase, and other EPA tools." ; dcterms:identifier "dsstoxdb" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:alzkb.browser, kgr:alzkb.data, kgr:dsstoxdb.api, kgr:dsstoxdb.chemical-api, kgr:dsstoxdb.dashboard, kgr:dsstoxdb.description, kgr:dsstoxdb.downloads, kgr:molepro.api, kgr:molepro.catalog, kgr:molepro.graph.edges, kgr:molepro.graph.nodes, kgr:molepro.trapi ; schema1:identifier "dsstoxdb" ; schema1:name "Distributed Structure-Searchable Toxicity (DSSTox) Database" ; skos:inScheme "biomedical", "chemistry and biochemistry", "environment", "toxicology" ; adms:status "Active" ; foaf:homepage . kgr:duo a schema1:Ontology ; rdfs:label "Data Use Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "DUO is an ontology which represent data use conditions." ; dcterms:identifier "duo" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:duo.kg-bioportal, kgr:duo.owl ; schema1:name "Data Use Ontology" ; doap:repository ; skos:inScheme "biomedical", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:earthportal a schema1:Aggregator ; rdfs:label "EarthPortal" ; dcterms:created "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "EarthPortal is an OntoPortal-based repository of ontologies and other semantic artefacts (thesauri, controlled vocabularies, code lists) for the Earth System, environmental sciences and related domains. Developed in the Data Terra research infrastructure and the FAIR-IMPACT project, it provides search, browsing, mappings, an annotator, a recommender, a SPARQL endpoint and a REST API. As of October 2026 its catalogue reported 92 artefacts (76 publicly listed), including SWEET, GCMD Keywords, GEMET, GeoNames, SOSA/SSN, EnvThes and many NERC Vocabulary Server collections. It federates with sibling OntoPortal instances such as AgroPortal, EcoPortal and BiodivPortal." ; dcterms:identifier "earthportal" ; dcterms:isReferencedBy ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:earthportal.annotator, kgr:earthportal.api, kgr:earthportal.api-docs, kgr:earthportal.portal, kgr:earthportal.sparql, kgr:earthportal.wiki ; schema1:name "EarthPortal" ; doap:repository ; skos:inScheme "climate", "environment", "geographic information systems", "information technology", "metadata" ; adms:status "Active" ; foaf:homepage . kgr:ebrains a schema1:KnowledgeGraph ; rdfs:label "EBRAINS Knowledge Graph" ; dcterms:created "2025-05-01T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A knowledge graph for the EBRAINS project, an infrastructure for data, tools and computing facilities for brain-related research." ; dcterms:identifier "ebrains" ; dcterms:modified "2026-07-03T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ebrains.api.core, kgr:ebrains.graph, kgr:ebrains.stats ; schema1:name "EBRAINS Knowledge Graph" ; doap:repository ; skos:inScheme "biomedical", "neuroscience" ; adms:status "Active" ; foaf:homepage . kgr:ec a schema1:Ontology ; rdfs:label "Enzyme Commission" ; dcterms:created "2025-11-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Enzyme Commission classification system provides a hierarchical numbering scheme for enzymes based on the chemical reactions they catalyze, maintained by the IUBMB." ; dcterms:identifier "ec" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ec.database, kgr:kg-microbe.graph.biomedical, kgr:kg-microbe.graph.biomedical-function, kgr:kg-microbe.graph.core, kgr:kg-microbe.graph.function, kgr:kg-microbe.graph.raw, kgr:obo-db-ingest.ec.json, kgr:obo-db-ingest.ec.obo, kgr:obo-db-ingest.ec.owl, kgr:obo-db-ingest.ec.sssom.tsv, kgr:obo-db-ingest.ec.tsv ; schema1:name "Enzyme Commission" ; skos:altLabel "EC", "EC Numbers", "Enzyme Commission Numbers", "IUBMB Enzyme Nomenclature" ; skos:inScheme "chemistry and biochemistry", "enzymes" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:iubmb . kgr:ecao a schema1:Ontology ; rdfs:label "The Echinoderm Anatomy and Development Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology for the development and anatomy of the different species of the phylum Echinodermata (NCBITaxon:7586)." ; dcterms:identifier "ecao" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ecao.kg-bioportal, kgr:ecao.obo, kgr:ecao.owl ; schema1:name "The Echinoderm Anatomy and Development Ontology" ; doap:repository ; skos:inScheme "anatomy and development" ; adms:status "Active" ; foaf:homepage . kgr:ecid a schema1:DataSource ; rdfs:label "ECID" ; dcterms:created "2025-05-12T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ECID is a biomedical knowledgebase of curated inter-chemical correlations from the core chemical datasets in exposomics. These datasets are prioritized from human biomonitoring studies using targeted and untargeted assays. ECID has applications in characterizing and understanding the effects of exposome chemicals on the human health." ; dcterms:identifier "ecid" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:ecid.bloodexposome.data, kgr:ecid.ccdb.site, kgr:ecid.compound.lists, kgr:ecid.dataset.list, kgr:ecid.echo.analyte.list, kgr:ecid.edir.site, kgr:ecid.hhear.analyte.list, kgr:ecid.metabolomics.data.dictionary, kgr:ecid.metabolomics.workbench.dictionary, kgr:ecid.nhanes.analyte.list ; schema1:name "ECID" ; doap:repository ; skos:inScheme "biomedical", "chemistry and biochemistry", "environment", "environmental exposure", "public health" ; adms:status "Active" ; foaf:homepage . kgr:eco a schema1:Ontology ; rdfs:label "Evidence and Conclusion Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology for experimental and other evidence statements." ; dcterms:identifier "eco" ; dcterms:isReferencedBy , , ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:cacao.api, kgr:cacao.go-annotations, kgr:cacao.gowiki, kgr:cacao.portal, kgr:disprot.downloads, kgr:disprot.idpo, kgr:eco.kg-bioportal, kgr:eco.obo, kgr:eco.owl, kgr:sri-reference-kg.graph, kgr:swisslipid.evidences ; schema1:identifier "eco" ; schema1:name "Evidence and Conclusion Ontology" ; doap:repository ; skos:inScheme "biomedical", "general" ; adms:status "Active" ; foaf:homepage . kgr:eco-kg a schema1:KnowledgeGraph ; rdfs:label "eco-KG" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A knowledge graph of plant traits starting with Planteome and EOL TraitBank." ; dcterms:identifier "eco-kg" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:eco-kg.graph ; schema1:name "eco-KG" ; doap:repository ; skos:inScheme "ecology", "environment", "organisms", "plants" ; skos:related "core" ; adms:status "Active" ; foaf:homepage . kgr:ecocore a schema1:Ontology ; rdfs:label "An ontology of core ecological entities" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Ecocore is a community ontology for the concise and controlled description of ecological traits of organisms." ; dcterms:identifier "ecocore" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ecocore.kg-bioportal, kgr:ecocore.obo, kgr:ecocore.owl ; schema1:name "An ontology of core ecological entities" ; doap:repository ; skos:inScheme "ecology", "environment" ; adms:status "Active" ; foaf:homepage . kgr:ecocyc a schema1:DataSource ; rdfs:label "EcoCyc" ; dcterms:created "2025-03-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "EcoCyc captures information from 44,000 publications for Escherichia coli K-12 substr. MG1655. Use EcoCyc to search for knowledge on E. coli genes, regulation, and metabolism; analyze transcriptomics data; perform comparative analyses; and run a metabolic model." ; dcterms:identifier "ecocyc" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ecocyc.api, kgr:ecocyc.metabolic_model, kgr:ecocyc.web, kgr:neo.model, kgr:neo.obo, kgr:obo-db-ingest.rhea.sssom.tsv ; schema1:name "EcoCyc" ; doap:repository ; skos:inScheme "genomics", "metabolism", "microbiology", "pathways" ; adms:status "Active" ; foaf:homepage . kgr:ecoportal a schema1:Aggregator ; rdfs:label "EcoPortal" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "EcoPortal is the LifeWatch ERIC repository of semantic artefacts (ontologies, thesauri, controlled vocabularies and glossaries) for ecology, biodiversity and related environmental domains. It is built on the open OntoPortal software, the same stack as BioPortal and AgroPortal, and offers browsing, search, mappings, an ontology recommender, a text annotator, FAIRness assessment, VocBench-based editing and a REST API. As of 2026-10-04 it hosted 82 semantic resources, including ECOCORE, PCO, BCO, FOVT, ENVTHES, AGROVOC, EUNIS habitats and the Darwin Core and Audubon Core controlled vocabularies." ; dcterms:identifier "ecoportal" ; dcterms:isReferencedBy , , ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:bioregistry.registry.json, kgr:bioregistry.sssom, kgr:ecoportal.api, kgr:ecoportal.docs, kgr:ecoportal.manual, kgr:ecoportal.portal ; schema1:name "EcoPortal" ; doap:repository ; skos:inScheme "biodiversity", "ecology", "environment", "information technology", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:ecosim a schema1:Resource ; rdfs:label "ecosim" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Ontology rendering of the EcoSIM Land System Model" ; dcterms:identifier "ecosim" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ecosim.kg-bioportal, kgr:ecosim.model.owl ; schema1:name "ecosim" ; doap:repository ; skos:inScheme "ecology", "environment" ; adms:status "Active" ; foaf:homepage . kgr:ecrin-mdr a schema1:Aggregator ; rdfs:label "ECRIN Clinical Research Metadata Repository" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The ECRIN Clinical Research Metadata Repository (MDR) aggregates metadata on clinical studies and their associated data objects (registry entries, protocols, results, publications and datasets) from trial registries and data repositories into one schema, providing a single search point for clinical research data. It is run by the European Clinical Research Infrastructure Network. On 2026-10-04 its API reported 971,303 studies and 1,542,181 data objects." ; dcterms:identifier "ecrin-mdr" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ecrin-mdr.api, kgr:ecrin-mdr.code, kgr:ecrin-mdr.portal, kgr:ecrin-mdr.schema, kgr:omicsdi.api, kgr:omicsdi.portal ; schema1:name "ECRIN Clinical Research Metadata Repository" ; doap:repository ; skos:altLabel "Clinical Research Metadata Repository", "ECRIN MDR", "MDR" ; skos:inScheme "clinical", "clinical trials", "information technology", "metadata" ; adms:status "Active" ; foaf:homepage . kgr:ecso a schema1:Ontology ; rdfs:label "The Ecosystem Ontology" ; dcterms:created "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Ecosystem Ontology (ECSO) is DataONE's ontology of ecosystem-level measurements and characteristics, originally developed for carbon flux measurements in the MsTMIP and LTER use cases. It is built on the OBOE observation model and reuses terms from ENVO, PATO, CHEBI and other OBO ontologies, and is used to semantically annotate datasets in the DataONE federation." ; dcterms:identifier "ecso" ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ecso.bioportal, kgr:ecso.github, kgr:ecso.kg-bioportal, kgr:ecso.owl ; schema1:name "The Ecosystem Ontology" ; doap:repository ; skos:inScheme "ecology", "environment" ; adms:status "Active" ; foaf:homepage . kgr:ecto a schema1:Ontology ; rdfs:label "Environmental conditions, treatments and exposures ontology" ; dcterms:created "2025-06-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ECTO describes exposures to experimental treatments of plants and model organisms (e.g. exposures to modification of diet, lighting levels, temperature); exposures of humans or any other organisms to stressors through a variety of routes, for purposes of public health, environmental monitoring etc, stimuli, natural and experimental, any kind of environmental condition or change in condition that can be experienced by an organism or population of organisms on earth. The scope is very general and can include for example plant treatment regimens, as well as human clinical exposures (although these may better be handled by a more specialized ontology)." ; dcterms:identifier "ecto" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ecto.ecto-base.json, kgr:ecto.ecto-base.obo, kgr:ecto.ecto-base.owl, kgr:ecto.json, kgr:ecto.kg-bioportal, kgr:ecto.obo, kgr:ecto.owl, kgr:efo.obo, kgr:efo.owl ; schema1:identifier "ecto" ; schema1:name "Environmental conditions, treatments and exposures ontology" ; doap:repository ; skos:inScheme "environment", "environmental exposure" ; adms:status "Active" ; foaf:homepage . kgr:edam a schema1:Ontology ; rdfs:label "EDAM Ontology" ; dcterms:created "2025-06-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "EDAM is an ontology of bioscientific data analysis and data management, covering topics, operations, data, identifiers, and formats. It supports semantic annotation of tools, workflows, training, and provenance metadata across life sciences." ; dcterms:identifier "edam" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:edam.csv, kgr:edam.kg-bioportal, kgr:edam.owl, kgr:edam.tsv, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:name "EDAM Ontology" ; doap:repository ; skos:inScheme "biological systems", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:edrr-invasive-catalog a schema1:DataSource ; rdfs:label "Catalog of U.S. Federal Early Detection/Rapid Response Invasive Species Databases and Tools" ; dcterms:created "2026-07-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Catalog of U.S. Federal Early Detection/Rapid Response (EDRR) Invasive Species Databases and Tools catalogs and describes existing online, federally supported databases and tools relevant to a potential national early detection and rapid response invasive species framework. It is published as a USGS data release on ScienceBase." ; dcterms:identifier "edrr-invasive-catalog" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:edrr-invasive-catalog.dataset, kgr:wildlifekn.graph ; schema1:name "Catalog of U.S. Federal Early Detection/Rapid Response Invasive Species Databases and Tools" ; skos:inScheme "biodiversity", "environment", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:effas-kpi a schema1:DataModel ; rdfs:label "EFFAS KPIs for ESG" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "KPIs for ESG is a standardized framework of Key Performance Indicators for Environmental, Social, and Governance (ESG) reporting, published by EFFAS (the European Federation of Financial Analysts Societies) together with DVFA (the German Society of Investment Professionals). The current \"KPIs for ESG 3.0\" edition defines sector-specific ESG indicators aligned with the Dow Jones Industry Classification Benchmark (ICB), intended for integration of ESG data into corporate performance reporting. It provides the controlled KPI vocabulary used by EmeraldGraph/EmeraldMind." ; dcterms:identifier "effas-kpi" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:effas-kpi.document, kgr:effas-kpi.landing, kgr:emeraldgraph.graph-json ; schema1:name "EFFAS KPIs for ESG" ; skos:inScheme "environment", "public health", "sustainability" ; adms:status "Active" ; foaf:homepage . kgr:efip a schema1:DataSource ; rdfs:label "eFIP" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "eFIP, Extracting Functional Impact of Phosphorylation, is a text-mining system for finding literature evidence about phosphorylation-dependent protein-protein interactions and functional impacts." ; dcterms:identifier "efip" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:efip.text-mining-system, kgr:iptmnet.ptm ; schema1:name "eFIP" ; skos:inScheme "biomedical", "literature", "natural language processing", "post-translational modification", "proteomics" ; adms:status "Inactive" ; foaf:homepage . kgr:efo a schema1:Ontology ; rdfs:label "Experimental Factor Ontology" ; dcterms:created "2025-06-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases, and for projects such as the GWAS catalog. It combines parts of several biological ontologies, such as UBERON anatomy, ChEBI chemical compounds, and Cell Ontology." ; dcterms:identifier "efo" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:babel.compendia, kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:cancer-genome-interpreter.clinicalkg.graph, kgr:clinicalkg.graph, kgr:clo.owl, kgr:efo.obo, kgr:efo.ols, kgr:efo.owl, kgr:epigraphdb.graph, kgr:genecards.web.interface, kgr:genomickb.graph, kgr:microbiomekg.api, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:pride-cv.obo, kgr:pride-cv.owl, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:identifier "efo" ; schema1:name "Experimental Factor Ontology" ; doap:repository ; skos:inScheme "biomedical", "phenotype" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ebi . kgr:ega a schema1:DataSource ; rdfs:label "European Genome-phenome Archive" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The European Genome-phenome Archive (EGA) is a global network for permanent archiving and sharing of personally identifiable genetic, phenotypic and clinical data generated by biomedical research projects and research-focused healthcare systems. It is jointly managed by EMBL-EBI (Cambridge, UK) and the Centre for Genomic Regulation (CRG, Barcelona) and was launched in 2008. Data are released only to bona fide researchers under controlled access, with each dataset governed by a Data Access Committee (DAC) and a data access policy. Study, dataset, DAC, policy, sample, experiment, run and analysis metadata are public. Federated EGA (FEGA) extends the archive with national nodes that keep data in their own jurisdictions." ; dcterms:identifier "ega" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:ega.fega, kgr:ega.metadata-api, kgr:ega.metadata-api.docs, kgr:ega.portal, kgr:ega.pyega3, kgr:omicsdi.api, kgr:omicsdi.portal ; schema1:name "European Genome-phenome Archive" ; doap:repository ; skos:altLabel "EGA", "European Genome-Phenome Archive" ; skos:inScheme "biomedical", "clinical", "genomics" ; skos:notation "FAIRsharing.mya1ff" ; adms:status "Active" ; foaf:homepage . kgr:eggnog a schema1:DataSource ; rdfs:label "eggNOG" ; dcterms:created "2026-01-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A database of orthologous groups and functional annotations derived from comparative genomics, supporting cross-species gene function inference." ; dcterms:identifier "eggnog" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:eggnog.download, kgr:eggnog.download.e7.clu2ogs, kgr:eggnog.download.e7.og-fasta-sequences, kgr:eggnog.download.e7.og-info-kegg-go, kgr:eggnog.download.e7.protein-families, kgr:eggnog.download.e7.proteins, kgr:eggnog.download.e7.taxid-info, kgr:eggnog.download.e7.trees, kgr:eggnog.portal, kgr:string.cog.links, kgr:string.cog.links.detailed, kgr:string.database, kgr:string.protein.links, kgr:string.protein.links.detailed, kgr:string.protein.links.full, kgr:string.protein.physical.links, kgr:string.protein.physical.links.detailed, kgr:string.protein.physical.links.full ; schema1:name "eggNOG" ; skos:altLabel "Evolutionary Genealogy of Genes: Non-supervised Orthologous Groups", "eggNOG" ; skos:inScheme "genomics", "molecular evolution" ; adms:status "Active" ; foaf:homepage . kgr:ehda a schema1:Ontology ; rdfs:label "Human developmental anatomy, timed version" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Description unavailable." ; dcterms:identifier "ehda" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-08T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:ehda.kg-bioportal ; schema1:name "Human developmental anatomy, timed version" ; skos:inScheme "anatomy and development" ; adms:status "Inactive" ; foaf:homepage . kgr:ehdaa a schema1:Ontology ; rdfs:label "Human developmental anatomy, abstract version" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Description unavailable." ; dcterms:identifier "ehdaa" ; dcterms:modified "2026-09-08T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:ehdaa.kg-bioportal, kgr:ehdaa.obo, kgr:ehdaa.owl ; schema1:name "Human developmental anatomy, abstract version" ; skos:inScheme "anatomy and development" ; adms:status "Inactive" ; foaf:homepage . kgr:ehdaa2 a schema1:Ontology ; rdfs:label "Human developmental anatomy, abstract" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A structured controlled vocabulary of stage-specific anatomical structures of the developing human." ; dcterms:identifier "ehdaa2" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:ehdaa2.kg-bioportal, kgr:ehdaa2.obo, kgr:ehdaa2.owl ; schema1:identifier "ehdaa2" ; schema1:name "Human developmental anatomy, abstract" ; doap:repository ; skos:inScheme "anatomy and development" ; adms:status "Inactive" ; foaf:homepage . kgr:ehrlink a schema1:DataSource ; rdfs:label "EHRLink" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "EHRLink is a drug-indication evidence source derived from a study in which clinicians linked prescribed medications to clinical problems in an electronic health record workflow; PharmacotherapyDB later processed these relationships for indication catalog construction." ; dcterms:identifier "ehrlink" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ehrlink.pharmacotherapydb-processing, kgr:ehrlink.publication, kgr:pharmacotherapydb.indications ; schema1:name "EHRLink" ; doap:repository ; skos:inScheme "biomedical", "clinical", "electronic health records", "pharmacology" ; adms:status "Inactive" ; foaf:homepage . kgr:ekg a schema1:KnowledgeGraph ; rdfs:label "eKG" ; dcterms:created "2026-04-22T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "eKG is an epidemiological knowledge graph extracted from the World Health Organization Disease Outbreak News corpus using an ensemble of large language models and published through the European Commission Joint Research Centre Data Catalogue." ; dcterms:identifier "ekg" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ekg.browser, kgr:ekg.csv, kgr:ekg.rdf, kgr:ekg.sparql, kgr:ekg.ttl ; schema1:name "eKG" ; skos:inScheme "biomedical", "epidemiology", "infectious disease", "literature", "natural language processing", "public health" ; adms:status "Active" ; foaf:homepage . kgr:ema a schema1:DataSource ; rdfs:label "European Medicines Agency" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The European Medicines Agency is the European Union agency responsible for scientific evaluation, supervision, and safety monitoring of medicines in the EU and EEA, including public medicine pages, EPARs, regulatory data, and pharmacovigilance resources." ; dcterms:identifier "ema" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ema.article-57, kgr:ema.medicine-data, kgr:ema.medicines, kgr:klocd.portal, kgr:medi.ema ; schema1:name "European Medicines Agency" ; skos:altLabel "EMA" ; skos:inScheme "biomedical", "clinical", "pharmacology", "pharmacovigilance" ; adms:status "Active" ; foaf:homepage . kgr:emap a schema1:Ontology ; rdfs:label "Mouse gross anatomy and development, timed" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A structured controlled vocabulary of stage-specific anatomical structures of the mouse (Mus)." ; dcterms:identifier "emap" ; dcterms:modified "2026-09-08T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:emap.kg-bioportal, kgr:emap.owl ; schema1:name "Mouse gross anatomy and development, timed" ; skos:inScheme "anatomy and development" ; adms:status "Inactive" ; foaf:homepage . kgr:emapa a schema1:Ontology ; rdfs:label "Mouse Developmental Anatomy Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology for mouse anatomy covering embryonic development and postnatal stages." ; dcterms:identifier "emapa" ; dcterms:isReferencedBy , , , , ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:babel.compendia, kgr:emapa.kg-bioportal, kgr:emapa.obo, kgr:emapa.owl, kgr:sri-reference-kg.graph ; schema1:identifier "emapa" ; schema1:name "Mouse Developmental Anatomy Ontology" ; doap:repository ; skos:inScheme "anatomy and development" ; adms:status "Active" ; foaf:homepage . kgr:embiology a schema1:KnowledgeGraph ; rdfs:label "EmBiology" ; dcterms:created "2025-08-12T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "EmBiology is a commercial, web-based knowledge graph platform from Elsevier that surfaces biological relationships across entities such as genes, proteins, diseases, cells, and more. EmBiology connects 1.4 million entities via 15.7 million relationships and provides 87.2 million referenced facts (figures reported by Elsevier), with weekly updates and annual rescans of the corpus. It uses NLP (including the TERMite engine) and expert curation to extract and quality-control relationships from full-text scientific literature and other sources, and offers interactive visualization (e.g., Sankey diagrams) and filtering to support discovery and decision-making in drug research and biology." ; dcterms:identifier "embiology" ; dcterms:license ; dcterms:modified "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:embiology.web ; schema1:identifier "embiology" ; schema1:name "EmBiology" ; skos:inScheme "biomedical", "drug discovery", "literature" ; adms:status "Active" ; foaf:homepage . kgr:emeraldgraph a schema1:KnowledgeGraph ; rdfs:label "EmeraldGraph" ; dcterms:created "2026-06-12T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "EmeraldGraph is the domain-specific knowledge graph used by EmeraldMind, a knowledge graph-augmented framework for greenwashing detection. It is built from corporate environmental, social, and governance reports to represent sustainability claims, organizations, goals, initiatives, metrics, evidence, and related relationships for retrieval-augmented claim assessment." ; dcterms:identifier "emeraldgraph" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:emeraldgraph.datasets, kgr:emeraldgraph.graph-json, kgr:emeraldgraph.pipeline, kgr:emeraldgraph.schema, kgr:emeraldgraph.zenodo-archive ; schema1:name "EmeraldGraph" ; doap:repository ; skos:inScheme "environment", "information technology", "sustainability" ; adms:status "Active" ; foaf:homepage . kgr:emerge a schema1:DataSource ; rdfs:label "Electronic Medical Records and Genomics Network" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Electronic Medical Records and Genomics Network is an NIH/NHGRI-funded consortium that combines DNA biorepositories with electronic medical record systems for genomic discovery and genomic medicine implementation research." ; dcterms:identifier "emerge" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:emerge.nhgri-project-page, kgr:emerge.portal, kgr:phewascat.associations ; schema1:name "Electronic Medical Records and Genomics Network" ; skos:altLabel "Electronic Medical Records and Genomics Network", "eMERGE" ; skos:inScheme "clinical", "electronic health records", "genomics", "precision medicine" ; adms:status "Active" ; foaf:homepage . kgr:emi a schema1:Ontology ; rdfs:label "Earth Metabolome Initiative Ontology" ; dcterms:created "2026-01-15T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Earth Metabolome Initiative (EMI) Ontology provides classes and properties for metabolites, taxonomy, traits, interactions, and associated metadata used to build METRIN-KG." ; dcterms:identifier "emi" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:emi.ttl, kgr:emikg.kg, kgr:emikg.sparql, kgr:emikg.web ; schema1:name "Earth Metabolome Initiative Ontology" ; doap:repository ; skos:inScheme "chemistry and biochemistry", "metabolomics" ; adms:status "Active" ; foaf:homepage . kgr:emikg a schema1:KnowledgeGraph ; rdfs:label "EMI KG" ; dcterms:created "2025-05-20T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A knowledge graph version of the Earth Metabolome Initiative (EMI) Ontology, containing over 413 million triples derived from metabolomic datasets. It provides a structured representation of metabolomic data within a semantic framework." ; dcterms:identifier "emikg" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:emikg.kg, kgr:emikg.sparql, kgr:emikg.web ; schema1:name "EMI KG" ; skos:inScheme "chemistry and biochemistry", "metabolomics" ; adms:status "Active" ; foaf:homepage . kgr:emind a schema1:DataSource ; rdfs:label "eMIND" ; dcterms:created "2026-05-20T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "eMIND is a University of Delaware and Protein Information Resource text-mining workflow for extracting protein-coding variant impacts in Alzheimer's disease and related dementias from the biomedical literature." ; dcterms:identifier "emind" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:emind.json, kgr:emind.site, kgr:prokn.emind.protein.has_variant.variant.edges, kgr:prokn.emind.variant.associated_with.disease.edges, kgr:prokn.emind.variant.impact.disease.edges, kgr:prokn.emind.variant.impact.protein.edges ; schema1:name "eMIND" ; skos:inScheme "biomedical", "genomics", "literature", "natural language processing", "neurodegenerative disease", "neuroscience" ; adms:status "Active" ; foaf:homepage . kgr:ena a schema1:DataSource ; rdfs:label "European Nucleotide Archive (ENA)" ; dcterms:created "2025-09-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The European Nucleotide Archive (ENA) is a comprehensive database providing free and open access to nucleotide sequence data, functional genomics data, and associated metadata. It is operated by EMBL-EBI and serves as an ELIXIR Core Data Resource and a Global Core Biodata Resource." ; dcterms:identifier "ena" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cngbdb.portal, kgr:ddbj.arsa, kgr:ddbj.dra, kgr:ddbj.getentry, kgr:ddbj.release, kgr:ddbj.search, kgr:ena.api, kgr:ena.browser, kgr:ena.datahubs, kgr:ena.docs, kgr:ena.ftp, kgr:ena.training, kgr:genecards.web.interface, kgr:omicsdi.api, kgr:omicsdi.portal, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db, kgr:togows.rest-api ; schema1:name "European Nucleotide Archive (ENA)" ; skos:inScheme "genomics" ; adms:status "Active" ; foaf:homepage . kgr:encode a schema1:DataSource ; rdfs:label "ENCODE" ; dcterms:created "2026-05-21T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Encyclopedia of DNA Elements (ENCODE) is an NHGRI-funded international consortium and data resource that catalogs functional elements in the human genome and related model systems using large-scale functional genomics assays, standardized processing pipelines, and openly accessible metadata." ; dcterms:identifier "encode" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , ; schema1:hasPart kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:cadd.snvs.grch37, kgr:cadd.snvs.grch38, kgr:chea-kg.graph, kgr:chea-kg.libraries, kgr:chea.libraries, kgr:encode.annotations, kgr:encode.api, kgr:encode.experiment-matrix, kgr:encode.portal, kgr:genecards.web.interface, kgr:genomickb.graph, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:lncrnalyzr.graph ; schema1:name "ENCODE" ; doap:repository ; skos:inScheme "epigenomics", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:endb a schema1:DataSource ; rdfs:label "ENdb" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ENdb is a manually curated database of experimentally validated enhancers for human and mouse, compiled from published literature. Each entry links an enhancer to its experimentally supported target gene(s) and includes detailed regulatory annotations such as the validation experiment type, associated transcription factors, disease and tissue/cell-line context, and references to the supporting publications. The database provides browse, search, genome browser, and bulk download interfaces, and serves as an upstream primary source for integrated resources including GenomicKB." ; dcterms:identifier "endb" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:endb.browse, kgr:endb.download, kgr:genomickb.graph ; schema1:name "ENdb" ; skos:inScheme "gene regulation", "genomics", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:enhanceratlas a schema1:DataSource ; rdfs:label "EnhancerAtlas" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "EnhancerAtlas is a genome-wide atlas of enhancer annotations spanning a large number of human and animal cell and tissue types. The resource integrates diverse high-throughput experimental datasets (including histone modifications, DNase-seq, transcription factor binding, and other epigenomic signals) to predict consensus enhancer regions and infer enhancer-target gene interactions. EnhancerAtlas 2.0 provides enhancer annotations for 586 tissue and cell types across nine species, making it a comprehensive reference for regulatory genomics. It serves as an upstream data source for the GenomicKB knowledge graph." ; dcterms:identifier "enhanceratlas" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:enhanceratlas.browse, kgr:enhanceratlas.download, kgr:genomickb.graph ; schema1:name "EnhancerAtlas" ; skos:inScheme "gene regulation", "genomics", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:enrichr a schema1:DataSource ; rdfs:label "Enrichr" ; dcterms:created "2026-05-21T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Enrichr is a Ma'ayan Lab web-based gene set enrichment analysis resource that accepts gene lists and related inputs, tests them against hundreds of curated and crowd-sourced gene set libraries, and provides ranked enrichment results, visualizations, and programmatic access." ; dcterms:identifier "enrichr" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:chea-kg.graph, kgr:chea-kg.libraries, kgr:chea.libraries, kgr:enrichr-kg.api, kgr:enrichr-kg.edges-csv, kgr:enrichr-kg.graph, kgr:enrichr-kg.nodes-csv, kgr:enrichr-kg.portal, kgr:enrichr.api, kgr:enrichr.library-statistics, kgr:enrichr.portal ; schema1:name "Enrichr" ; doap:repository ; skos:inScheme "biomedical", "genomics", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:enrichr-kg a schema1:KnowledgeGraph ; rdfs:label "Enrichr-KG" ; dcterms:created "2025-09-23T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Enrichr-KG is a Ma'ayan Lab knowledge graph and enrichment web resource built from Enrichr gene set libraries, connecting genes to pathways, diseases, drugs, cell types, ontologies, and other functional annotations for graph-based exploration and enrichment analysis." ; dcterms:identifier "enrichr-kg" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:enrichr-kg.api, kgr:enrichr-kg.downloads, kgr:enrichr-kg.edges-csv, kgr:enrichr-kg.graph, kgr:enrichr-kg.nodes-csv, kgr:enrichr-kg.portal ; schema1:name "Enrichr-KG" ; doap:repository ; skos:inScheme "biomedical", "drug discovery", "genomics", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:ensembl a schema1:DataSource ; rdfs:label "Ensembl" ; dcterms:created "2025-05-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A genome browser for vertebrate genomes that supports research in comparative genomics, evolution, sequence variation, and transcriptional regulation" ; dcterms:identifier "ensembl" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; schema1:about , , , , ; schema1:hasPart kgr:aop-db.data, kgr:aopwiki-rdf.ttl, kgr:archs4.human.gene_counts, kgr:archs4.human.transcript_counts, kgr:archs4.mouse.gene_counts, kgr:archs4.mouse.transcript_counts, kgr:archs4.zoo, kgr:babel.compendia, kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:cadd.snvs.grch37, kgr:cadd.snvs.grch38, kgr:cellmodelpassports.gene_identifiers, kgr:dbnsfp.academic, kgr:dbnsfp.commercial, kgr:ensembl.api.perl, kgr:ensembl.api.rest, kgr:ensembl.biomart, kgr:ensembl.blast, kgr:ensembl.browser, kgr:ensembl.vep, kgr:epigraphdb.graph, kgr:gencode.human.gtf, kgr:gencode.mouse.gtf, kgr:genecards.gene.annotations, kgr:genecards.web.interface, kgr:genomickb.graph, kgr:gpmdb.api, kgr:hrpimp.data, kgr:hrpimp.huri.psi, kgr:kg-jensenlab-diseases.edges.kgx, kgr:kg-jensenlab-diseases.edges.trapi, kgr:kg-jensenlab-diseases.nodes.kgx, kgr:mygene.api, kgr:ncbigene.gene2ensembl, kgr:oma.mapping.ensembl, kgr:omim.mim2gene, kgr:pavs-kg.api, kgr:pavs-kg.phenopackets, kgr:pavs-kg.portal, kgr:pavs-kg.sparql, kgr:peptideatlas.human.ensembl-mapping, kgr:pheknowlator.graph, kgr:phosphoelm.dataset, kgr:plant-reactome.mappings, kgr:rdf-portal.sparql.ebi, kgr:rna-kg.kg.edges, kgr:rna-kg.kg.neo4j, kgr:rna-kg.kg.nodes, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db, kgr:rtx-kg2.graph.edges, kgr:rtx-kg2.graph.nodes, kgr:rtx-kg2.neo4j, kgr:sniff.federation-edges, kgr:sniff.federation-nodes, kgr:string.cog.links, kgr:string.cog.links.detailed, kgr:string.database, kgr:string.protein.links, kgr:string.protein.links.detailed, kgr:string.protein.links.full, kgr:string.protein.physical.links, kgr:string.protein.physical.links.detailed, kgr:string.protein.physical.links.full ; schema1:identifier "ensembl-gene" ; schema1:name "Ensembl" ; doap:repository ; skos:inScheme "genomics" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ebi . kgr:entrez a schema1:Aggregator ; rdfs:label "Entrez" ; dcterms:created "2025-11-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Entrez is NCBI's primary text search and retrieval system that integrates multiple biological databases including PubMed, GenBank, Gene, Protein, and many others. It provides a unified query interface and retrieval mechanism across NCBI's vast collection of biomedical and genomic data resources, enabling researchers to search and access information from disparate databases using a single query system." ; dcterms:identifier "entrez" ; dcterms:modified "2026-06-01T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:entrez.edirect, kgr:entrez.eutils, kgr:entrez.web ; schema1:identifier "entrez" ; schema1:name "Entrez" ; skos:altLabel "Entrez", "NCBI Entrez", "NCBIGene" ; skos:inScheme "biomedical", "literature" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ncbi . kgr:envo a schema1:Ontology ; rdfs:label "Environment Ontology" ; dcterms:created "2025-07-10T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology of environmental systems, components, and processes." ; dcterms:identifier "envo" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ecso.owl, kgr:envo.json, kgr:envo.kg-bioportal, kgr:envo.obo, kgr:envo.owl, kgr:envo.subsets.EnvO-Lite-GSC.obo, kgr:envo.subsets.envo-basic.obo, kgr:envo.subsets.envoEmpo.owl, kgr:envthes.ttl, kgr:kg-microbe.graph.biomedical, kgr:kg-microbe.graph.biomedical-function, kgr:kg-microbe.graph.core, kgr:kg-microbe.graph.function, kgr:kg-microbe.graph.raw, kgr:metabokg.graph, kgr:metabokg.schema ; schema1:name "Environment Ontology" ; doap:repository ; skos:inScheme "environment" ; adms:status "Active" ; foaf:homepage . kgr:envthes a schema1:Ontology ; rdfs:label "EnvThes" ; dcterms:created "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "EnvThes (Environmental Thesaurus) is the controlled vocabulary of the European Long-Term Ecosystem, critical zone and socio-ecological Research Infrastructure (eLTER RI), published as a SKOS thesaurus. It provides harmonised terms for describing observations and measurements of ecosystem processes, including parameters, methods, variables and research topics, and supplies common keywords for annotating and querying metadata in DEIMS-SDR. Concepts carry multilingual labels and links to matching concepts in thesauri such as GEMET, EUROVOC and AGROVOC and in ENVO. The vocabulary is coordinated by Umweltbundesamt GmbH (Austria), maintained as a spreadsheet that is converted to RDF on GitHub, and served through a Skosmos browser." ; dcterms:identifier "envthes" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:envthes.api, kgr:envthes.csv, kgr:envthes.skosmos, kgr:envthes.ttl, kgr:envthes.xlsx ; schema1:name "EnvThes" ; doap:repository ; skos:altLabel "ENVTHES", "Environmental Thesaurus", "eLTER Environmental Thesaurus" ; skos:inScheme "ecology", "environment" ; skos:notation "FAIRsharing.dS2o69" ; adms:status "Active" ; foaf:homepage . kgr:eo a schema1:Ontology ; rdfs:label "Plant Environment Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experiments." ; dcterms:identifier "eo" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:eo.obo, kgr:eo.owl ; schema1:name "Plant Environment Ontology" ; doap:repository ; skos:inScheme "environment", "organisms", "plants" ; adms:status "Inactive" ; foaf:homepage . kgr:eol-traitbank a schema1:DataSource ; rdfs:label "Encyclopedia of Life (EOL) TraitBank" ; dcterms:created "2025-12-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Encyclopedia of Life (EOL) TraitBank is a searchable, comprehensive, open digital repository for organism traits, measurements, interactions, and other attributes aggregated from 50+ data sources. It covers 1.7 million taxa across the entire tree of life with 11 million+ trait records organized using semantic web standards and Darwin Core terminology." ; dcterms:identifier "eol-traitbank" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:eco-kg.graph, kgr:eol-traitbank.api, kgr:eol-traitbank.bulk-csv, kgr:eol-traitbank.cypher, kgr:eol-traitbank.docs, kgr:eol-traitbank.reconciliation, kgr:eol-traitbank.web ; schema1:identifier "eol-traitbank" ; schema1:name "Encyclopedia of Life (EOL) TraitBank" ; doap:repository ; skos:inScheme "biodiversity", "organisms", "phenotype" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:smithsonian-nmnh . kgr:epa-aqs a schema1:DataSource ; rdfs:label "EPA Air Quality System (AQS)" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Air Quality System (AQS) is the US Environmental Protection Agency's repository of ambient air-quality monitoring data, assembled to support air quality assessments, area designations, modeling for permit review, and reports to Congress mandated by the Clean Air Act. It holds pollutant measurements from thousands of monitoring stations operated by EPA, state, local, and tribal agencies, along with meteorological data, station location information, and quality-assurance records. AQS data are exposed programmatically through a public REST API that returns JSON. AQS is an upstream data source for the KnowWhereGraph." ; dcterms:identifier "epa-aqs" ; dcterms:license "US federal government public domain" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:epa-aqs.api, kgr:epa-aqs.landing, kgr:knowwheregraph.graph ; schema1:name "EPA Air Quality System (AQS)" ; skos:inScheme "air pollution", "environment", "public health" ; adms:status "Active" ; foaf:homepage . kgr:epa-echo a schema1:DataSource ; rdfs:label "EPA Enforcement and Compliance History Online (ECHO)" ; dcterms:created "2026-07-01T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "EPA Enforcement and Compliance History Online (ECHO) is a US Environmental Protection Agency web resource that provides access to compliance and enforcement information for regulated facilities, along with integrated environmental data downloads. ECHO hosts the PFAS Analytic Tools, which aggregate per- and polyfluoroalkyl substance (PFAS) information from multiple EPA programs, including drinking water sampling, clean water discharge monitoring, facility registry records, and greenhouse gas reporting, into downloadable, filterable datasets. SAWGraph obtains several of its federal PFAS datasets through the ECHO PFAS Analytic Tools download interface." ; dcterms:identifier "epa-echo" ; dcterms:license "US federal government public domain" ; dcterms:modified "2026-07-01T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:epa-echo.landing, kgr:epa-echo.pfas-tools, kgr:sawgraph.graph ; schema1:name "EPA Enforcement and Compliance History Online (ECHO)" ; skos:inScheme "chemistry and biochemistry", "environment", "public health" ; adms:status "Active" ; foaf:homepage . kgr:epa-frs a schema1:DataSource ; rdfs:label "EPA Facility Registry Service (FRS)" ; dcterms:created "2026-07-01T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Facility Registry Service (FRS) is the US Environmental Protection Agency's centrally managed database that identifies facilities, sites, and places subject to environmental regulation or of environmental interest. Each facility is assigned a unique FRS identifier and described with location, industry classification (NAICS and SIC codes), and links to EPA program records. SAWGraph uses FRS as a primary source for the facilities associated with PFAS releases and for their industry classifications, integrated through the SAWGraph Facilities and Industries Ontology (FIO)." ; dcterms:identifier "epa-frs" ; dcterms:license "US federal government public domain" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:epa-frs.data, kgr:epa-frs.landing, kgr:fiokg.graph, kgr:sawgraph.graph ; schema1:name "EPA Facility Registry Service (FRS)" ; skos:inScheme "environment" ; adms:status "Active" ; foaf:homepage . kgr:epa-ghg a schema1:DataSource ; rdfs:label "EPA Greenhouse Gas Reporting Program (GHGRP)" ; dcterms:created "2026-07-01T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The US Environmental Protection Agency's Greenhouse Gas Reporting Program (GHGRP) collects annual greenhouse gas data from large emitting facilities, suppliers, and other sources across the United States. It includes fluorinated greenhouse gas emissions and supplies, some of which involve per- and polyfluoroalkyl substances (PFAS) and related fluorinated chemistry, reported by facility with location, chemical identity, and emission amounts. SAWGraph uses GHGRP facility emission data, obtained through the EPA PFAS Analytic Tools, as a primary source for PFAS-related releases from industrial facilities." ; dcterms:identifier "epa-ghg" ; dcterms:license "US federal government public domain" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:epa-ghg.fgas, kgr:epa-ghg.landing, kgr:sawgraph.graph ; schema1:name "EPA Greenhouse Gas Reporting Program (GHGRP)" ; skos:inScheme "air pollution", "chemistry and biochemistry", "environment" ; adms:status "Active" ; foaf:homepage . kgr:epa-sdwis a schema1:DataSource ; rdfs:label "EPA Safe Drinking Water Information System (SDWIS)" ; dcterms:created "2026-07-01T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Safe Drinking Water Information System (SDWIS) is the US Environmental Protection Agency's national database of public water system information collected under the Safe Drinking Water Act. It records public water systems, their sampling points, monitoring results, and violations, including per- and polyfluoroalkyl substance (PFAS) sampling reported by states and EPA. SDWIS PFAS results are distributed through the EPA PFAS Analytic Tools and SDWIS Federal Reports interfaces. SAWGraph uses SDWIS drinking water PFAS data as a primary source for PFAS occurrence in public water systems." ; dcterms:identifier "epa-sdwis" ; dcterms:license "US federal government public domain" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:epa-sdwis.landing, kgr:epa-sdwis.reports, kgr:geoconnex.graph, kgr:sawgraph.graph ; schema1:name "EPA Safe Drinking Water Information System (SDWIS)" ; skos:inScheme "chemistry and biochemistry", "environment", "public health", "water resources" ; adms:status "Active" ; foaf:homepage . kgr:epa-srs a schema1:DataSource ; rdfs:label "EPA Substance Registry Services" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "EPA Substance Registry Services is the U.S. Environmental Protection Agency's central system for information about substances tracked or regulated by EPA or other sources, including chemicals, biological organisms, and substance lists." ; dcterms:identifier "epa-srs" ; dcterms:license ; dcterms:modified "2026-06-03T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:dsstoxdb.downloads, kgr:epa-srs.about, kgr:epa-srs.search, kgr:epa-srs.widget ; schema1:name "EPA Substance Registry Services" ; skos:altLabel "EPA SRS", "Substance Registry Services" ; skos:inScheme "chemistry and biochemistry", "environment" ; adms:status "Active" ; foaf:homepage . kgr:epa-ucmr a schema1:DataSource ; rdfs:label "EPA Unregulated Contaminant Monitoring Rule (UCMR)" ; dcterms:created "2026-07-01T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Unregulated Contaminant Monitoring Rule (UCMR) program directs the US Environmental Protection Agency to collect nationally representative occurrence data for contaminants that are not yet regulated in public drinking water systems. The fifth cycle (UCMR 5) requires monitoring for 29 per- and polyfluoroalkyl substances (PFAS) and lithium, producing sampling results reported by public water systems across the United States. SAWGraph uses UCMR PFAS monitoring results as a primary source for PFAS occurrence in drinking water." ; dcterms:identifier "epa-ucmr" ; dcterms:license "US federal government public domain" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:epa-ucmr.landing, kgr:sawgraph.graph ; schema1:name "EPA Unregulated Contaminant Monitoring Rule (UCMR)" ; skos:inScheme "chemistry and biochemistry", "environment", "public health", "water resources" ; adms:status "Active" ; foaf:homepage . kgr:epd a schema1:DataSource ; rdfs:label "Eukaryotic Promoter Database" ; dcterms:created "2026-06-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Eukaryotic Promoter Database (EPD) is an annotated, non-redundant collection of experimentally validated eukaryotic POL II promoters. Its EPDnew components provide high-quality, automatically derived promoter collections for selected organisms, with tools for promoter analysis." ; dcterms:identifier "epd" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:epd.downloads, kgr:epd.site, kgr:genecards.web.interface, kgr:genomickb.graph ; schema1:name "Eukaryotic Promoter Database" ; skos:inScheme "gene regulation", "genomics", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:epigraphdb a schema1:KnowledgeGraph ; rdfs:label "EpiGraphDB" ; dcterms:created "2025-09-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "EpiGraphDB is an analytical platform and graph database for health data science that integrates Mendelian randomization causal estimates across a wide range of phenotypes with diverse bioinformatic and epidemiological resources. It supports systematic causal inference, data mining, and exploration through a web application, API, R package, and curated graph knowledge base." ; dcterms:identifier "epigraphdb" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:epigraphdb.api, kgr:epigraphdb.docs, kgr:epigraphdb.examples, kgr:epigraphdb.graph, kgr:epigraphdb.rpackage, kgr:epigraphdb.web ; schema1:name "EpiGraphDB" ; doap:repository ; skos:inScheme "biomedical", "epidemiology", "genome-wide association studies", "genomics", "public health" ; adms:status "Active" ; foaf:homepage . kgr:epio a schema1:Ontology ; rdfs:label "Epilepsy Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A application driven Epilepsy Ontology with official terms from the ILAE." ; dcterms:identifier "epio" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:epio.kg-bioportal, kgr:epio.owl ; schema1:name "Epilepsy Ontology" ; doap:repository ; skos:inScheme "biomedical", "clinical", "neuroscience" ; adms:status "Active" ; foaf:homepage . kgr:epo a schema1:Ontology ; rdfs:label "Epidemiology Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology designed to support the semantic annotation of epidemiology resources" ; dcterms:identifier "epo" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:epo.owl ; schema1:name "Epidemiology Ontology" ; skos:inScheme "biomedical", "epidemiology", "public health" ; adms:status "Inactive" ; foaf:homepage . kgr:epsd a schema1:DataSource ; rdfs:label "Eukaryotic Phosphorylation Site Database 2.0" ; dcterms:created "2025-11-13T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "EPSD (Eukaryotic Phosphorylation Site Database) is a comprehensive database that curates and annotates experimentally identified protein phosphorylation sites across eukaryotic species. Version 2.0 contains 2,769,163 phosphorylation sites in 362,707 phosphoproteins from 223 eukaryotic species (95 animals, 20 protists, 61 plants, 48 fungi). The database integrates data from high-throughput phosphoproteomic studies and 10 public databases, providing detailed annotations including phosphopeptide sequences, localization probability scores, cell/tissue sources, and primary references. EPSD 2.0 features 88,074 functional annotations for 32,762 phosphorylation sites, covering 58 types of downstream effects on phosphoproteins and 107 regulatory impacts on biological processes. For eight model organisms (human, mouse, rat, Drosophila, C. elegans, Arabidopsis, S. pombe, S. cerevisiae), phosphoproteins are meticulously annotated with information from 100 external resources across 15 aspects including kinase/phosphatase regulators, 3D structures, physicochemical characteristics, genomic variations, functional descriptions, protein domains, molecular interactions, drug-target associations, disease data, orthologs, transcript expression, proteomics, subcellular localization, and regulatory pathways. EPSD 2.0 represents a 2.5-fold increase in data volume compared to version 1.0 and provides intrinsic disorder propensity and surface accessibility calculations for phosphorylation sites. The database supports advanced search options including substrate search, peptide search, batch search, BLAST search, and browse by species functionality." ; dcterms:identifier "epsd" ; dcterms:isReferencedBy , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , , , , , , , ; schema1:hasPart kgr:epsd.browse, kgr:epsd.download, kgr:epsd.portal, kgr:epsd.search, kgr:kinace.interactions, kgr:kinace.portal ; schema1:identifier "epsd" ; schema1:name "Eukaryotic Phosphorylation Site Database 2.0" ; skos:altLabel "EPSD", "EPSD 2.0", "Eukaryotic phosphorylation site database" ; skos:inScheme "genomics", "post-translational modification", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:eqtlgen a schema1:DataSource ; rdfs:label "eQTLGen Consortium" ; dcterms:created "2025-09-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The eQTLGen Consortium conducts large-scale meta-analyses of expression quantitative trait loci (eQTLs) in blood samples to investigate the genetic architecture of gene expression and understand the genetic underpinnings of complex traits. Phase I analyzed 31,684 blood and PBMC samples from 37 cohorts, identifying thousands of cis-eQTLs, trans-eQTLs, and expression quantitative trait score (eQTS) associations. The consortium also includes a single-cell eQTLGen project. Phase II is expanding to genome-wide eQTL meta-analysis across even more blood-based cohorts. The resulting summary statistics provide a valuable resource for interpreting genome-wide association studies (GWAS), developing novel methods, and understanding molecular mechanisms of complex traits." ; dcterms:identifier "eqtlgen" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:epigraphdb.graph, kgr:eqtlgen.allele_frequencies, kgr:eqtlgen.cis_eqtl_full, kgr:eqtlgen.cis_eqtl_significant, kgr:eqtlgen.cis_eqtl_smr, kgr:eqtlgen.phase1_browser, kgr:eqtlgen.phase2_cookbook, kgr:eqtlgen.sc_website, kgr:eqtlgen.trans_eqtl_full, kgr:eqtlgen.trans_eqtl_significant ; schema1:name "eQTLGen Consortium" ; doap:repository ; skos:inScheme "genome-wide association studies", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:era-kg a schema1:KnowledgeGraph ; rdfs:label "ERA Knowledge Graph" ; dcterms:created "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The ERA Knowledge Graph is the RDF publication of the European Union Agency for Railways' Register of Infrastructure (RINF) and related registers, released as linked open data since 2021. It describes the European railway network as a graph of operational points, sections of line, tracks, tunnels, sidings, and platforms, together with the interoperability parameters attached to them, including load capability, maximum permitted speed, gauging and gradient profiles, braking systems, energy supply and contact line systems, train detection systems, and authorized vehicle types, with geospatial location data organized by EU member state. Source data supplied by infrastructure managers and national registration entities is converted to RDF using RML mappings. The graph is formalized by the ERA Vocabulary (ERA Ontology), which carries roughly 76 classes, 600 properties, 52 annotation properties, and more than 80 SKOS concept schemes for coded parameter values, and is accompanied by SHACL shapes used for validation. Entities are minted in the http://data.europa.eu/949/ namespace. The graph is served from a public GraphDB deployment and dumped periodically to Zenodo; the infrastructure repository held roughly 53.7 million triples when checked in August 2026." ; dcterms:identifier "era-kg" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:era-kg.api, kgr:era-kg.documentation, kgr:era-kg.dump, kgr:era-kg.graphdb, kgr:era-kg.mappings, kgr:era-kg.ontology, kgr:era-kg.portal, kgr:era-kg.sparql ; schema1:name "ERA Knowledge Graph" ; doap:repository ; skos:altLabel "ERA RINF Knowledge Graph", "ERA-KG", "EU Rail Knowledge Graph" ; skos:inScheme "transportation" ; adms:status "Active" ; foaf:homepage . kgr:eram a schema1:DataSource ; rdfs:label "eRAM: encyclopedia of rare disease annotations for precision medicine" ; dcterms:created "2025-11-19T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The encyclopedia of Rare disease Annotation for Precision Medicine (eRAM) is a standardized system providing computational annotations for rare diseases to support precision medicine. eRAM provides annotations for approximately 16,000 rare diseases, including detailed information on clinical phenotypes, symptoms, genes, and genotypes. The database contains over 6,100 human disease-related phenotype terms, 31,600 mammalian phenotype terms, 10,200 symptoms from UMLS, 18,800 genes and 92,500 genotypes. eRAM organizes diseases in a tree structure to systematically display relationships between diseases with similar pathogenesis, close anatomical sites, the same clinical symptoms or subtypes, facilitating both research into rare disease mechanisms and clinical diagnosis and treatment decisions." ; dcterms:identifier "eram" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , ; schema1:hasPart kgr:eram.downloads, kgr:eram.web ; schema1:identifier "eram" ; schema1:name "eRAM: encyclopedia of rare disease annotations for precision medicine" ; skos:altLabel "eRAM" ; skos:inScheme "biomedical", "clinical", "phenotype", "precision medicine", "rare disease" ; adms:status "Active" ; foaf:homepage . kgr:erccrbp a schema1:DataSource ; rdfs:label "ERCC RNA Binding Protein Dataset" ; dcterms:created "2025-06-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ERCC RNA Binding Protein dataset (ERCCRBP) is a collection of data focused on RNA binding proteins involved in extracellular RNA functions as part of the NIH Common Fund's Extracellular RNA Communication Consortium (ERCC) program. This dataset provides insights into the protein-RNA interactions important for exRNA stability, transport, and signaling." ; dcterms:identifier "erccrbp" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:name "ERCC RNA Binding Protein Dataset" ; skos:inScheme "chemistry and biochemistry", "genomics", "non-coding RNA" ; adms:status "Active" ; foaf:homepage . kgr:erccreg a schema1:DataSource ; rdfs:label "ERCC Regulatory Element Dataset" ; dcterms:created "2025-06-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ERCC Regulatory Element dataset (erccreg) is a collection of data related to regulatory elements of extracellular RNA as part of the NIH Common Fund's Extracellular RNA Communication Consortium (ERCC) program. This dataset focuses on RNA-based regulatory mechanisms involved in extracellular communication." ; dcterms:identifier "erccreg" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:name "ERCC Regulatory Element Dataset" ; skos:inScheme "chemistry and biochemistry", "genomics", "non-coding RNA" ; adms:status "Active" ; foaf:homepage . kgr:ero a schema1:Ontology ; rdfs:label "eagle-i resource ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology of research resources such as instruments. protocols, reagents, animal models and biospecimens." ; dcterms:identifier "ero" ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ero.kg-bioportal, kgr:ero.owl ; schema1:name "eagle-i resource ontology" ; skos:inScheme "biomedical", "information technology" ; adms:status "Inactive" ; foaf:homepage . kgr:esgf a schema1:DataSource ; rdfs:label "Earth System Grid Federation (ESGF)" ; dcterms:created "2026-07-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Earth System Grid Federation (ESGF) is an international, distributed data infrastructure that archives and serves climate model output and observational data, including the CMIP model ensembles. ESGF exposes dataset metadata such as source_id, experiment_id, variable_id, and activity_id through federated search nodes and APIs, enabling discovery and download of climate simulation datasets." ; dcterms:identifier "esgf" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:climatemodelskg.graph, kgr:esgf.search ; schema1:name "Earth System Grid Federation (ESGF)" ; skos:inScheme "climate", "environment", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:eu-ctr a schema1:DataSource ; rdfs:label "EU Clinical Trials Register and Clinical Trials Information System" ; dcterms:created "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The EU Clinical Trials Register (EU CTR) and the Clinical Trials Information System (CTIS) are the European Medicines Agency's public registries of interventional clinical trials of medicines in the European Union and European Economic Area. The EU Clinical Trials Register, established under Article 11 of Directive 2001/20/EC, gives public access to protocol and summary results information from the EudraCT database for trials started since May 2004, including paediatric trials run outside the EU/EEA as part of a paediatric investigation plan. CTIS, under Clinical Trials Regulation (EU) No 536/2014, has handled all new trial applications since 31 January 2023 and became the single entry point for ongoing trials after the transition period ended in January 2025; its public portal publishes trial information, documents and results. The legacy register no longer accepts new trials but remains online as the source for trials authorised under the Directive." ; dcterms:identifier "eu-ctr" ; dcterms:license ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ecrin-mdr.api, kgr:ecrin-mdr.portal, kgr:eu-ctr.ctis, kgr:eu-ctr.ctis.docs, kgr:eu-ctr.download, kgr:eu-ctr.faq, kgr:eu-ctr.results, kgr:eu-ctr.search, kgr:who-ictrp.portal, kgr:who-ictrp.search-export, kgr:who-ictrp.web-service ; schema1:name "EU Clinical Trials Register and Clinical Trials Information System" ; skos:altLabel "CTIS", "Clinical Trials Information System", "EU CTR", "EU Clinical Trials Register", "euclinicaltrials.eu" ; skos:inScheme "biomedical", "clinical", "clinical trials", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:eu-knowledge-graph a schema1:KnowledgeGraph ; rdfs:label "EU Knowledge Graph" ; dcterms:created "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The EU Knowledge Graph is a Wikibase-based knowledge graph of structured information about the European Union, deployed and maintained at the European Commission. It describes EU institutions, countries and their capitals, and Commission Directorates-General, and it carries the large project datasets that are its main content, namely 2,111,428 projects financed by the European Union recorded through the Kohesio cohesion policy project, and 678,448 beneficiaries of those projects, roughly ten percent of which are linked to Wikidata so that Wikidata statements complement the Commission's own data. It also holds the 2021 Nomenclature of Territorial Units for Statistics (NUTS 2021) used by Eurostat, the multilingual European Science Vocabulary (EuroSciVoc) representing fields of science, and even Commission facilities such as buildings, canteens, cafeterias, and parkings. When queried on 2026-08-06 the query service reported 889,454,967 triples. The stated goal is to make EU project spending visible and navigable for citizens with no technical background; Kohesio is the main public application built on the graph. Because it runs on Wikibase, the graph supports multilingual labels, statement-level provenance, and curation by authorized editors, who sign in through EU Login and request editor rights." ; dcterms:identifier "eu-knowledge-graph" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:eu-knowledge-graph.api, kgr:eu-knowledge-graph.exports, kgr:eu-knowledge-graph.kohesio, kgr:eu-knowledge-graph.qa, kgr:eu-knowledge-graph.query-service, kgr:eu-knowledge-graph.sparql, kgr:eu-knowledge-graph.wikibase, kgr:eu-knowledge-graph.wikibase-config ; schema1:name "EU Knowledge Graph" ; skos:altLabel "EU KG", "EuKnowledgeGraph", "Linked Open Data EU" ; skos:inScheme "general" ; adms:status "Active" ; foaf:homepage . kgr:eupath a schema1:Ontology ; rdfs:label "VEuPathDB ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology is developed to support Eukaryotic Pathogen, Host & Vector Genomics Resource (VEuPathDB; https://veupathdb.org)." ; dcterms:identifier "eupath" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:eupath.kg-bioportal, kgr:eupath.owl ; schema1:name "VEuPathDB ontology" ; doap:repository ; skos:inScheme "biomedical", "host-pathogen interactions", "infectious disease", "microbiology", "organisms" ; adms:status "Inactive" ; foaf:homepage . kgr:eupathdb a schema1:DataSource ; rdfs:label "Eukaryotic Pathogen Database (EuPathDB)" ; dcterms:created "2025-08-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Eukaryotic Pathogen Database (EuPathDB) is an integrated genomics database covering numerous eukaryotic pathogens including Plasmodium, Trypanosoma, and other parasites. It provides functional genomics resources integrating data from human and veterinary parasites, now known as VEuPathDB (Vectorbase and EuPathDB)." ; dcterms:identifier "eupathdb" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , ; schema1:hasPart kgr:eupathdb.api, kgr:eupathdb.apollo, kgr:eupathdb.docs, kgr:eupathdb.downloads, kgr:eupathdb.mapveu, kgr:eupathdb.portal, kgr:microbiomekg.api ; schema1:name "Eukaryotic Pathogen Database (EuPathDB)" ; skos:inScheme "biomedical", "genomics", "host-pathogen interactions", "infectious disease", "microbiology", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:eurio a schema1:KnowledgeGraph ; rdfs:label "EURIO Knowledge Graph" ; dcterms:created "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The EURIO (EUropean Research Information Ontology) Knowledge Graph publishes CORDIS data about research projects funded by the European Union's framework programmes for research and innovation - FP7, Horizon 2020, and Horizon Europe - as linked data. It covers projects together with their grants, payments, and monetary amounts; the organizations that participate in them and the roles those organizations play; and project outputs including deliverables, publications, journal papers, and proceedings papers, alongside SKOS reference data for countries, funding schemes, programmes, and topics. When queried on 2026-08-06 the graph held 26,429,912 triples, including 80,208 projects, 72,534 organizations, and 696,156 results. Entities are minted in the http://data.europa.eu/s66# namespace. The graph is published by the Publications Office of the European Union both as a full dump and as per-entity named graph subsets, each available in RDF/XML, Turtle, N-Quads, N-Triples, and JSON-LD, and is queryable through a public Virtuoso SPARQL endpoint on the CORDIS Datalab. Its schema, the EURIO ontology, is aligned with EU ontologies such as DINGO and FRAPO and with widely used vocabularies including schema.org and the W3C Organization Ontology." ; dcterms:identifier "eurio" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:eurio.datalab, kgr:eurio.dataset-record, kgr:eurio.dump, kgr:eurio.ontology, kgr:eurio.organisations-graph, kgr:eurio.projects-graph, kgr:eurio.results-graph, kgr:eurio.sparql ; schema1:name "EURIO Knowledge Graph" ; skos:altLabel "CORDIS EURIO Knowledge Graph", "EURIO", "EUropean Research Information Ontology Knowledge Graph" ; skos:inScheme "literature", "research funding", "scholarly communication" ; adms:status "Active" ; foaf:homepage . kgr:europepmc a schema1:Aggregator ; rdfs:label "Europe PMC" ; dcterms:created "2026-10-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Europe PMC is an open life sciences literature database run by EMBL-EBI. It brings together PubMed abstracts, full-text articles from PubMed Central, author manuscripts, preprints, Agricola records, patents, theses and other sources under one search, and links publications to research grants, data citations and database records. Text-mined annotations of genes and proteins, organisms, diseases, chemicals, GO terms, accession numbers and other entity types are served through SciLite and the Annotations API. Data are available through the website, REST APIs and bulk FTP downloads." ; dcterms:identifier "europepmc" ; dcterms:isReferencedBy , , ; dcterms:license ; dcterms:modified "2026-10-03T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biostudies.api, kgr:biostudies.ftp, kgr:europepmc.annotations-api, kgr:europepmc.ftp, kgr:europepmc.grants-api, kgr:europepmc.oa-fulltext, kgr:europepmc.portal, kgr:europepmc.rest-api, kgr:europepmc.textmined-terms, kgr:onco.all_json ; schema1:name "Europe PMC" ; doap:repository ; skos:altLabel "Europe PubMed Central", "EuropePMC" ; skos:inScheme "biomedical", "literature", "natural language processing", "research funding", "scholarly communication" ; adms:status "Active" ; foaf:homepage . kgr:ev a schema1:Ontology ; rdfs:label "eVOC (Expressed Sequence Annotation for Humans)" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Description unavailable." ; dcterms:identifier "ev" ; dcterms:modified "2026-09-08T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ev.obo, kgr:ev.owl ; schema1:name "eVOC (Expressed Sequence Annotation for Humans)" ; skos:inScheme "anatomy and development" ; adms:status "Inactive" ; foaf:homepage . kgr:eva a schema1:DataSource ; rdfs:label "European Variation Archive" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The European Variation Archive (EVA) is EMBL-EBI's open-access archive for genetic variation data from all species. It accepts submitted VCF studies, archives and annotates the variants, and assigns submitted (SS) and clustered (RS) variant accessions. For non-human species it took over the legacy dbSNP variant data and is now the reference archive that issues RS IDs, released as periodic RefSNP releases (release 9, May 2026, covering 315 species)." ; dcterms:identifier "eva" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:eva.api, kgr:eva.code, kgr:eva.ftp, kgr:eva.help, kgr:eva.identifiers-api, kgr:eva.portal, kgr:eva.rs-releases, kgr:eva.variant-browser, kgr:omicsdi.api, kgr:omicsdi.portal ; schema1:name "European Variation Archive" ; doap:repository ; skos:altLabel "EVA" ; skos:inScheme "genetic variation", "genomics" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ebi . kgr:evlncrnas a schema1:DataSource ; rdfs:label "EVLncRNAs" ; dcterms:created "2018-01-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "EVLncRNAs is a comprehensive database of experimentally validated functional long non-coding RNAs (lncRNAs) curated manually from low-throughput experimental studies. The database covers functional lncRNAs from 162 species, including disease associations, biological functions, interaction partners, structures, circular RNAs, exosomal lncRNAs, peptide-coding lncRNAs, and resistant lncRNAs. EVLncRNAs provides functional classifications based on Gene Ontology categories (biological processes, cellular components, molecular functions, and clinical applications), detailed interaction pathways, and integration with homologous lncRNAs, subcellular localization, phase separation, COVID-19, and organoid-related data." ; dcterms:identifier "evlncrnas" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:evlncrnas.circrnas, kgr:evlncrnas.diseases, kgr:evlncrnas.download, kgr:evlncrnas.exosomal, kgr:evlncrnas.help, kgr:evlncrnas.interactions, kgr:evlncrnas.peptide, kgr:evlncrnas.portal, kgr:evlncrnas.resistant, kgr:evlncrnas.species, kgr:evlncrnas.structures, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db ; schema1:name "EVLncRNAs" ; skos:inScheme "genomics", "non-coding RNA" ; adms:status "Active" ; foaf:homepage . kgr:evoweb a schema1:KnowledgeGraph ; rdfs:label "EvoWeb" ; dcterms:created "2026-03-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "EvoWeb - An Open Knowledge Graph of Co-evolving Genes (NIAID)" ; dcterms:identifier "evoweb" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:evoweb.sparql, kgr:evoweb.tpf ; schema1:name "EvoWeb" ; skos:inScheme "genomics", "molecular evolution" ; adms:status "Active" ; foaf:homepage . kgr:exmo a schema1:Ontology ; rdfs:label "Exercise Medicine Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A core reference ontology built upon BFO about exercise medicine and it contains the related terms for healthy people, people with chronic conditions and people living with diability to exercise." ; dcterms:identifier "exmo" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:exmo.kg-bioportal, kgr:exmo.owl ; schema1:name "Exercise Medicine Ontology" ; doap:repository ; skos:inScheme "biomedical", "clinical" ; adms:status "Active" ; foaf:homepage . kgr:exo a schema1:Ontology ; rdfs:label "Exposure ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Vocabularies for describing exposure data to inform understanding of environmental health." ; dcterms:identifier "exo" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ctd.exposure_ontology, kgr:exo.kg-bioportal, kgr:exo.obo, kgr:exo.owl ; schema1:name "Exposure ontology" ; doap:repository ; skos:inScheme "biomedical", "environment", "environmental exposure" ; adms:status "Active" ; foaf:homepage . kgr:expressionatlas a schema1:Aggregator ; rdfs:label "Expression Atlas" ; dcterms:created "2025-09-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Expression Atlas is EMBL-EBI's open science resource that provides information about gene and protein expression across species and biological conditions. It aggregates, processes, and visualizes gene expression data from thousands of manually curated experiments spanning multiple species, tissue types, developmental stages, diseases, and experimental perturbations. Both bulk RNA-sequencing and single-cell RNA-sequencing datasets are supported, offering baseline expression profiles and differential gene expression analysis results through standardized processing pipelines." ; dcterms:identifier "expressionatlas" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-10-03T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:eco-kg.graph, kgr:expressionatlas.api, kgr:expressionatlas.baseline-summary, kgr:expressionatlas.differential-results, kgr:expressionatlas.documentation, kgr:expressionatlas.experiment-downloads, kgr:expressionatlas.ftp-bulk, kgr:expressionatlas.portal, kgr:expressionatlas.r-objects, kgr:expressionatlas.single-cell, kgr:gene-expression-atlas-okn.graph, kgr:omicsdi.api, kgr:omicsdi.portal, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db ; schema1:name "Expression Atlas" ; doap:repository ; skos:inScheme "biomedical", "gene expression profiling", "genomics", "organisms" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ebi . kgr:fabio a schema1:Ontology ; rdfs:label "FABIO" ; dcterms:created "2025-12-11T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "FABIO (Functional Requirements for Bibliographic Records Object) is a comprehensive ontology for describing bibliographic resources and their properties. It extends the FRBR (Functional Requirements for Bibliographic Records) model into a machine-readable ontology format, enabling semantic representation of bibliographic entities, relationships, and metadata. FABIO supports the organization and discovery of scholarly works and publication resources across knowledge systems." ; dcterms:identifier "fabio" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:fabio.documentation, kgr:fabio.ttl, kgr:forum.graph.dump, kgr:openbiodiv.ontology.ttl ; schema1:name "FABIO" ; doap:repository ; skos:inScheme "general", "literature", "scholarly communication" ; adms:status "Active" ; foaf:homepage . kgr:fabric a schema1:DataSource ; rdfs:label "FABRIC Cancer Portal" ; dcterms:created "2026-06-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The FABRIC (Functional Alteration Bias Recovery In Coding regions) Cancer Portal is a catalogue of human protein-coding genes ranked by the strength of positive selection acting on them in cancer. It quantifies, for each gene, the bias toward functional alteration of its protein across large somatic mutation datasets." ; dcterms:identifier "fabric" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:fabric.genes, kgr:fabric.site, kgr:genecards.web.interface ; schema1:name "FABRIC Cancer Portal" ; skos:inScheme "biomedical", "cancer", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:faers a schema1:DataSource ; rdfs:label "FDA Adverse Event Reporting System" ; dcterms:created "2025-11-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The FDA Adverse Event Monitoring System (AEMS), formerly the FDA Adverse Event Reporting System (FAERS), is a database that contains adverse event reports, medication error reports, and product quality complaints resulting in adverse events submitted to the FDA. AEMS/FAERS supports the FDA's post-marketing safety surveillance program for drug and therapeutic biologic products. The database adheres to ICH E2B international safety reporting guidance, and adverse events are coded using MedDRA (Medical Dictionary for Regulatory Activities) terminology. FAERS provides quarterly data files in ASCII and XML formats dating back to 2012, with archives available for earlier data." ; dcterms:identifier "faers" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:aeolus.standardized_data, kgr:faers.electronic_submissions, kgr:faers.faq, kgr:faers.public_dashboard, kgr:faers.quarterly_data_ascii, kgr:faers.quarterly_data_xml, kgr:gp-kg.graph, kgr:kg-predict.gpkg, kgr:mps-db.portal, kgr:multiomics-kp.graph, kgr:openfda.apis, kgr:openfda.downloads ; schema1:identifier "faers" ; schema1:name "FDA Adverse Event Reporting System" ; skos:altLabel "AEMS", "FAERS", "FDA Adverse Event Monitoring System", "FDA Adverse Event Reporting System" ; skos:inScheme "clinical", "drug discovery", "pharmacology", "pharmacovigilance", "public health" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:fda . kgr:fairdomhub a schema1:DataSource ; rdfs:label "FAIRDOMHub" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "FAIRDOMHub is a public repository and collaboration environment for sharing systems biology research outputs, including data files, models, SOPs, presentations and publications, organized by project and by investigation, study and assay (ISA). It runs on the open source SEEK platform and is operated by the FAIRDOM consortium. On 2026-10-04 its JSON API listed 521 projects, 234 investigations, 6,004 data files and 502 SOPs. Each contribution carries a license chosen by its submitter, and metadata are licensed CC BY 4.0." ; dcterms:identifier "fairdomhub" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:fairdomhub.api, kgr:fairdomhub.docs, kgr:fairdomhub.portal, kgr:fairdomhub.seek, kgr:fairdomhub.sparql, kgr:omicsdi.api, kgr:omicsdi.portal ; schema1:name "FAIRDOMHub" ; doap:repository ; skos:altLabel "FAIRDOM Hub" ; skos:inScheme "biological systems", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:fairsharing a schema1:Aggregator ; rdfs:label "FAIRsharing" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "FAIRsharing is a curated, community-driven registry of data and metadata standards (terminologies, models, formats, reporting guidelines and identifier schemas), databases and repositories, and data policies from funders, journals and other organizations, across all disciplines. Records are interlinked, carry persistent FAIRsharing identifiers and DOIs, and are maintained by the FAIRsharing team at the University of Oxford together with record owners. Content is available through a web portal and an authenticated REST API under CC BY-SA 4.0." ; dcterms:identifier "fairsharing" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:bioregistry.registry.json, kgr:bioregistry.sssom, kgr:fairsharing.api, kgr:fairsharing.api-docs, kgr:fairsharing.code, kgr:fairsharing.docs, kgr:fairsharing.mcp, kgr:fairsharing.portal ; schema1:name "FAIRsharing" ; skos:altLabel "BioSharing" ; skos:inScheme "information technology", "metadata" ; adms:status "Active" ; foaf:homepage . kgr:faldo a schema1:Ontology ; rdfs:label "FALDO" ; dcterms:created "2025-06-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "FALDO (Feature Annotation Location Description Ontology) is an ontology for describing sequence feature locations using RDF/OWL. It provides a standardized way to represent genomic and protein sequence positions, regions, and strands in Semantic Web formats." ; dcterms:identifier "faldo" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:faldo.browser, kgr:faldo.kg-bioportal, kgr:faldo.rdf, kgr:faldo.ttl, kgr:jpost.rdf, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:name "FALDO" ; doap:repository ; skos:altLabel "Feature Annotation Location Description Ontology" ; skos:inScheme "genomics", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:fantom5 a schema1:DataSource ; rdfs:label "FANTOM5" ; dcterms:created "2026-06-15T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "FANTOM5 (Functional Annotation of the Mammalian Genome 5) is a RIKEN-led international project that built a promoter-level mammalian expression atlas using Cap Analysis of Gene Expression (CAGE). It maps transcription start sites and quantifies promoter and enhancer activity across a broad collection of human and mouse primary cells, tissues, and cell lines. The resource provides genome-wide catalogues of CAGE peaks (promoters) and transcribed enhancers together with their expression profiles, supporting studies of gene regulation and cell-type-specific transcription." ; dcterms:identifier "fantom5" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , ; schema1:hasPart kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:fantom5.atlas, kgr:fantom5.docs, kgr:fantom5.sstar, kgr:fantom5.zenbu, kgr:genecards.web.interface, kgr:genomickb.graph, kgr:lsdb-archive.fantom5 ; schema1:name "FANTOM5" ; skos:inScheme "anatomy and development", "gene expression profiling", "genomics", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:fao a schema1:Ontology ; rdfs:label "Fungal gross anatomy" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A structured controlled vocabulary for the anatomy of fungi." ; dcterms:identifier "fao" ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:fao.kg-bioportal, kgr:fao.obo, kgr:fao.owl ; schema1:name "Fungal gross anatomy" ; doap:repository ; skos:inScheme "anatomy and development" ; adms:status "Active" ; foaf:homepage . kgr:fbbi a schema1:Ontology ; rdfs:label "Biological Imaging Methods Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology for the description of sample preparation, visualization, and imaging methods used in biomedical research." ; dcterms:identifier "fbbi" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:fbbi.fbbi-base.obo, kgr:fbbi.fbbi-base.owl, kgr:fbbi.kg-bioportal, kgr:fbbi.obo, kgr:fbbi.owl ; schema1:name "Biological Imaging Methods Ontology" ; doap:repository ; skos:inScheme "biomedical", "general" ; adms:status "Active" ; foaf:homepage . kgr:fbbt a schema1:Ontology ; rdfs:label "Drosophila gross anatomy" ; dcterms:created "2025-06-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology representing the gross anatomy of Drosophila melanogaster." ; dcterms:identifier "fbbt" ; dcterms:isReferencedBy , , , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:efo.obo, kgr:efo.owl, kgr:fbbt.fbbt-simple.obo, kgr:fbbt.fbbt-simple.owl, kgr:fbbt.json, kgr:fbbt.obo, kgr:fbbt.owl, kgr:sri-reference-kg.graph ; schema1:identifier "fbbt" ; schema1:name "Drosophila gross anatomy" ; doap:repository ; skos:inScheme "anatomy and development", "insects", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:fbcv a schema1:Ontology ; rdfs:label "FlyBase Controlled Vocabulary" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A structured controlled vocabulary used for various aspects of annotation by FlyBase." ; dcterms:identifier "fbcv" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:fbcv.json, kgr:fbcv.kg-bioportal, kgr:fbcv.obo, kgr:fbcv.owl ; schema1:identifier "fbcv" ; schema1:name "FlyBase Controlled Vocabulary" ; doap:repository ; skos:inScheme "insects", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:fbdv a schema1:Ontology ; rdfs:label "Drosophila development" ; dcterms:created "2025-06-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A structured controlled vocabulary of the development of Drosophila melanogaster." ; dcterms:identifier "fbdv" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:efo.obo, kgr:efo.owl, kgr:fbdv.fbdv-simple.obo, kgr:fbdv.fbdv-simple.owl, kgr:fbdv.json, kgr:fbdv.obo, kgr:fbdv.owl, kgr:sri-reference-kg.graph ; schema1:identifier "fbdv" ; schema1:name "Drosophila development" ; doap:repository ; skos:inScheme "anatomy and development", "insects", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:fbsp a schema1:Ontology ; rdfs:label "Fly taxonomy" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The taxonomy of the family Drosophilidae (largely after Baechli) and of other taxa referred to in FlyBase." ; dcterms:identifier "fbsp" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:fbsp.kg-bioportal, kgr:fbsp.owl ; schema1:name "Fly taxonomy" ; skos:inScheme "insects", "organisms", "taxonomy" ; adms:status "Inactive" ; foaf:homepage . kgr:fda-orange-book a schema1:DataSource ; rdfs:label "FDA Orange Book" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The FDA Orange Book, Approved Drug Products with Therapeutic Equivalence Evaluations, identifies drug products approved on the basis of safety and effectiveness by FDA and provides therapeutic equivalence, patent, and exclusivity information." ; dcterms:identifier "fda-orange-book" ; dcterms:license ; dcterms:modified "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:fda-orange-book.data-files, kgr:fda-orange-book.preface, kgr:fda-orange-book.search, kgr:medi.orangebook, kgr:openfda.apis, kgr:openfda.downloads ; schema1:name "FDA Orange Book" ; skos:altLabel "Approved Drug Products with Therapeutic Equivalence Evaluations", "Orange Book" ; skos:inScheme "biomedical", "clinical", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:fda-orphan-drugs a schema1:DataSource ; rdfs:label "FDA Orphan Drug Designations and Approvals" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The FDA Orphan Drug Designations and Approvals database, maintained by the FDA Office of Orphan Products Development (OOPD), lists drugs and biological products that have received orphan designation under the Orphan Drug Act for rare diseases or conditions, from 1983 to the present. Each record gives the generic and trade names, designation date, designated indication, designation status (including withdrawal or revocation dates), FDA orphan approval status, approved labeled indication, marketing approval date, orphan exclusivity end date and protected indication, and sponsor name and address. Indications are free-text and are not coded to a disease vocabulary. The full listing held 8,247 records when exported on 2026-10-04." ; dcterms:identifier "fda-orphan-drugs" ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:fda-orphan-drugs.docs, kgr:fda-orphan-drugs.export, kgr:fda-orphan-drugs.search, kgr:mychem.api ; schema1:identifier "fda-orphan-drug-db" ; schema1:name "FDA Orphan Drug Designations and Approvals" ; skos:altLabel "FDA Orphan Drug Designations", "OOPD database", "Orphan Drug Product Designation Database" ; skos:inScheme "biomedical", "pharmacology", "rare disease" ; adms:status "Active" ; foaf:homepage . kgr:fideo a schema1:Ontology ; rdfs:label "Food Interactions with Drugs Evidence Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Food-Drug interactions automatically extracted from scientific literature" ; dcterms:identifier "fideo" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:fideo.kg-bioportal, kgr:fideo.owl, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv ; schema1:name "Food Interactions with Drugs Evidence Ontology" ; doap:repository ; skos:inScheme "chemistry and biochemistry", "drug interactions", "food", "nutrition", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:finngen a schema1:DataSource ; rdfs:label "FinnGen" ; dcterms:created "2025-06-27T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "FinnGen is a large-scale genomics research project aimed at improving human health through genetic insights from the genetically unique Finnish population, combining genome information with digital health record data from 500,000 Finnish biobank participants." ; dcterms:identifier "finngen" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:disgenet.data, kgr:finngen.endpoints, kgr:finngen.meta_analysis, kgr:finngen.risteys, kgr:finngen.summary_stats ; schema1:name "FinnGen" ; skos:inScheme "biomedical", "clinical", "electronic health records", "genome-wide association studies", "genomics", "population genetics", "precision medicine" ; adms:status "Active" ; foaf:homepage . kgr:fiokg a schema1:KnowledgeGraph ; rdfs:label "SAWGraph FRS KG" ; dcterms:created "2025-12-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The FRS (Facility Registry Service) KG is the part of the SAWGraph project that stores data about facilities from EPA's Facility Registry service (FRS) together with their NAICS industry classification and the spatial location." ; dcterms:identifier "fiokg" ; dcterms:license "US federal government public domain" ; dcterms:modified "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:fiokg.graph, kgr:fiokg.sparql, kgr:fiokg.tpf ; schema1:name "SAWGraph FRS KG" ; skos:inScheme "agriculture", "environment" ; adms:status "Active" ; foaf:homepage . kgr:fire a schema1:DataSource ; rdfs:label "FIRE (Frequently Interacting REgions)" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "FIRE (Frequently Interacting REgions) are genomic regions that participate in an unusually high number of local chromatin interactions, identified from high-throughput chromosome conformation capture (Hi-C) data. They were defined by Schmitt et al. (Cell Reports, 2016), who built a compendium of chromatin contact maps across 14 human primary tissues and cell types and showed that FIREs mark spatially active, cell-type-specific regions of the genome enriched for super-enhancers and disease-associated variants. FIRE serves as an upstream chromatin-architecture data layer in GenomicKB, contributing three-dimensional genome-organization annotations to that knowledge graph." ; dcterms:identifier "fire" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:fire.kg-bioportal, kgr:fire.publication, kgr:genomickb.graph ; schema1:name "FIRE (Frequently Interacting REgions)" ; doap:repository ; skos:inScheme "epigenomics", "genomics", "systems biology" ; adms:status "Inactive" ; foaf:homepage . kgr:fix a schema1:Ontology ; rdfs:label "Physico-chemical methods and properties" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology of physico-chemical methods and properties." ; dcterms:identifier "fix" ; dcterms:modified "2026-09-08T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:fix.kg-bioportal, kgr:fix.obo, kgr:fix.owl ; schema1:name "Physico-chemical methods and properties" ; skos:inScheme "chemistry and biochemistry" ; adms:status "Orphaned" ; foaf:homepage . kgr:flopo a schema1:Ontology ; rdfs:label "Flora Phenotype Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Traits and phenotypes of flowering plants occurring in digitized Floras" ; dcterms:identifier "flopo" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:flopo.kg-bioportal, kgr:flopo.owl ; schema1:name "Flora Phenotype Ontology" ; doap:repository ; skos:inScheme "organisms", "phenotype", "plants" ; adms:status "Active" ; foaf:homepage . kgr:flu a schema1:Ontology ; rdfs:label "Influenza Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Description unavailable." ; dcterms:identifier "flu" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:flu.kg-bioportal, kgr:flu.owl ; schema1:name "Influenza Ontology" ; skos:inScheme "biomedical", "infectious disease" ; adms:status "Inactive" ; foaf:homepage . kgr:flybase a schema1:DataSource ; rdfs:label "FlyBase" ; dcterms:created "2025-09-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "FlyBase is a comprehensive database of genomic and genetic data for Drosophila melanogaster (fruit fly) and related species. It provides curated information on genes, genomes, phenotypes, genetic variants, stocks, and experimental tools for the Drosophila research community. The database integrates sequence data, genome annotations, functional characterizations, expression patterns, genetic interactions, disease models, and orthology relationships. FlyBase serves as the primary reference for Drosophila gene nomenclature and provides extensive tools for querying and analyzing genomic data across multiple Drosophila species." ; dcterms:identifier "flybase" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:babel.compendia, kgr:flybase.bulk.data, kgr:flybase.gene.sequences.fasta, kgr:flybase.genome.annotations.gff, kgr:flybase.genome.sequences.fasta, kgr:flybase.jbrowse, kgr:flybase.web.interface, kgr:genecards.model.organisms, kgr:genecards.web.interface, kgr:kg-alzheimers.graph, kgr:neo.model, kgr:neo.obo, kgr:obo-db-ingest.flybase.json, kgr:obo-db-ingest.flybase.obo, kgr:obo-db-ingest.flybase.owl, kgr:obo-db-ingest.flybase.tsv, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db, kgr:sri-reference-kg.graph, kgr:string.cog.links, kgr:string.cog.links.detailed, kgr:string.database, kgr:string.protein.links, kgr:string.protein.links.detailed, kgr:string.protein.links.full, kgr:string.protein.physical.links, kgr:string.protein.physical.links.detailed, kgr:string.protein.physical.links.full ; schema1:identifier "flybase" ; schema1:name "FlyBase" ; doap:repository ; skos:inScheme "genomics", "insects", "model organisms", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:fma a schema1:Ontology ; rdfs:label "Foundational Model of Anatomy Ontology (subset)" ; dcterms:created "2025-06-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "This is currently a slimmed down version of FMA" ; dcterms:identifier "fma" ; dcterms:isReferencedBy , , ; dcterms:license ; dcterms:modified "2026-04-15T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:babel.compendia, kgr:efo.obo, kgr:efo.owl, kgr:fma.owl, kgr:hra-kg.graph.json, kgr:hra-kg.graph.nq, kgr:hra-kg.graph.nt, kgr:hra-kg.graph.ttl, kgr:hra-kg.graph.xml, kgr:hra.data, kgr:hra.knowledge-graph ; schema1:name "Foundational Model of Anatomy Ontology (subset)" ; doap:repository ; skos:inScheme "anatomy and development" ; adms:status "Inactive" ; foaf:homepage . kgr:fobi a schema1:Ontology ; rdfs:label "Food-Biomarker Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "FOBI (Food-Biomarker Ontology) is an ontology to represent food intake data and associate it with metabolomic data" ; dcterms:identifier "fobi" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:fobi.kg-bioportal, kgr:fobi.owl ; schema1:name "Food-Biomarker Ontology" ; doap:repository ; skos:inScheme "chemistry and biochemistry", "food", "metabolomics", "nutrition" ; adms:status "Active" ; foaf:homepage . kgr:foodb a schema1:DataSource ; rdfs:label "FooDB" ; dcterms:created "2025-05-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Food Database (FooDB) is the world's largest and most comprehensive resource on food constituents, chemistry, and biology. It provides detailed information about the chemical constituents found in food, designed for applications in nutrition, food science, dietary planning, and general education." ; dcterms:identifier "foodb" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cancer-genome-interpreter.clinicalkg.graph, kgr:clinicalkg.graph, kgr:foodb.data.csv, kgr:foodb.data.experimental_cms, kgr:foodb.data.experimental_cms_peak_lists, kgr:foodb.data.experimental_msms, kgr:foodb.data.experimental_msms_peak_lists, kgr:foodb.data.fid, kgr:foodb.data.images, kgr:foodb.data.json, kgr:foodb.data.mysql, kgr:foodb.data.nmr, kgr:foodb.data.nmr_peak_lists, kgr:foodb.data.predicted_cms, kgr:foodb.data.predicted_cms_peak_lists, kgr:foodb.data.predicted_msms, kgr:foodb.data.predicted_msms_peak_lists, kgr:foodb.data.xml, kgr:foodb.web, kgr:service-kp.trapi, kgr:spoke-okn.graph, kgr:spoke.graph, kgr:unibiomap.auxs, kgr:unibiomap.links, kgr:unibiomap.pred, kgr:unibiomap.pred.full ; schema1:identifier "foodb" ; schema1:name "FooDB" ; skos:altLabel "FooDB", "The Food Database" ; skos:inScheme "agriculture", "biomedical", "food", "nutrition" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:wishart-lab . kgr:fooddata-central a schema1:DataSource ; rdfs:label "FoodData Central" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "FoodData Central is the U.S. Department of Agriculture's integrated food composition data system, run by the Agricultural Research Service (Beltsville Human Nutrition Research Center) and hosted by the National Agricultural Library. It provides nutrient and food component profiles for five data types (Foundation Foods, SR Legacy, the Food and Nutrient Database for Dietary Studies (FNDDS), Branded Foods and Experimental Foods), with a search interface, a REST API and bulk CSV and JSON downloads. The data are in the public domain under CC0 1.0." ; dcterms:identifier "fooddata-central" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:fooddata-central.api, kgr:fooddata-central.api-docs, kgr:fooddata-central.branded.csv, kgr:fooddata-central.branded.json, kgr:fooddata-central.downloads, kgr:fooddata-central.foundation.csv, kgr:fooddata-central.foundation.json, kgr:fooddata-central.full.csv, kgr:fooddata-central.portal, kgr:fooddata-central.sr-legacy.csv, kgr:fooddata-central.sr-legacy.json, kgr:fooddata-central.survey.csv, kgr:fooddata-central.survey.json, kgr:foodkg.build-scripts, kgr:foodkg.sdd-dictionary, kgr:foodkg.usda-sample, kgr:service-kp.trapi ; schema1:identifier "fooddata-central" ; schema1:name "FoodData Central" ; skos:altLabel "FDC", "USDA FoodData Central" ; skos:inScheme "agriculture", "food", "nutrition" ; adms:status "Active" ; foaf:homepage . kgr:foodkg a schema1:KnowledgeGraph ; rdfs:label "FoodKG" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "FoodKG is a food knowledge graph built at Rensselaer Polytechnic Institute as part of the HEALS project with IBM Research. It links about one million recipes from the Recipe1M dataset, their ingredients, USDA nutrient data and the FoodOn food ontology, with provenance for each statement, to support food recommendation and question answering. The project releases its build scripts, mapping files and supporting ontologies rather than full RDF dumps; the full graph (about 67 million triples) is generated locally or queried through a public SPARQL endpoint, which returned HTTP 502 when checked on 2026-10-04." ; dcterms:identifier "foodkg" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:foodkg.build-scripts, kgr:foodkg.dgo, kgr:foodkg.sdd-dictionary, kgr:foodkg.site, kgr:foodkg.sparql, kgr:foodkg.usda-sample, kgr:foodkg.whattomake, kgr:foodkg.whattomake-foodon, kgr:foodkg.whattomake-individuals ; schema1:name "FoodKG" ; skos:altLabel "Food Knowledge Graph" ; skos:inScheme "food", "nutrition" ; adms:status "Inactive" ; foaf:homepage . kgr:foodon a schema1:Ontology ; rdfs:label "Food Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A broadly scoped ontology representing entities which bear a food role . It encompasses materials in natural ecosystems and agriculture that are consumed by humans and domesticated animals. This includes any generic (unbranded) raw or processed food material found in processing plants, markets, stores or food distribution points. FoodOn also imports nutritional component and dietary pattern terms from other OBO Foundry ontologies to support interoperability in diet and nutrition research" ; dcterms:identifier "foodon" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:foodkg.build-scripts, kgr:foodkg.sdd-dictionary, kgr:foodkg.sparql, kgr:foodkg.usda-sample, kgr:foodkg.whattomake-foodon, kgr:foodon.owl, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:sri-reference-kg.graph ; schema1:identifier "foodon" ; schema1:name "Food Ontology" ; doap:repository ; skos:inScheme "chemistry and biochemistry", "food", "nutrition" ; adms:status "Active" ; foaf:homepage . kgr:forum a schema1:KnowledgeGraph ; rdfs:label "FORUM" ; dcterms:created "2025-12-11T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "FORUM is a Knowledge Graph providing a semantic representation of relations between chemicals and biomedical concepts. It is built from a federation of life science databases and scientific literature repositories. FORUM supports metabolomics studies by enabling the identification of biomarkers and classification of individuals through comprehensive chemical-concept associations." ; dcterms:identifier "forum" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:forum.api, kgr:forum.graph.dump, kgr:forum.void, kgr:forum.webapp ; schema1:name "FORUM" ; doap:repository ; skos:inScheme "biomedical", "chemistry and biochemistry", "metabolomics" ; adms:status "Active" ; foaf:homepage . kgr:fovt a schema1:Ontology ; rdfs:label "FuTRES Ontology of Vertebrate Traits" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "FuTRES Ontology of Vertebrate Traits is an application ontology used to convert vertebrate trait data in spreadsheet to triples. FOVT leverages the BioCollections Ontology (BCO) to link observations of individual specimens to their trait values. Traits are defined in the Ontology of Biological Attributes (OBA)." ; dcterms:identifier "fovt" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:fovt.fovt-base.obo, kgr:fovt.fovt-base.owl, kgr:fovt.obo, kgr:fovt.owl ; schema1:name "FuTRES Ontology of Vertebrate Traits" ; doap:repository ; skos:inScheme "phenotype" ; adms:status "Active" ; foaf:homepage . kgr:freebase a schema1:KnowledgeGraph ; rdfs:label "Freebase" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Freebase was a large collaborative knowledge base of structured general knowledge, started by Metaweb Technologies in 2007 and acquired by Google in 2010. Its graph of topics, types and properties (about 1.9 billion triples in the final RDF dump) was used as a source for the Google Knowledge Graph and for many linked data and NLP projects. Freebase was shut down in 2016 and much of its content migrated to Wikidata. Google still documents the final data dumps, but the download links denied anonymous access when checked on 2026-10-04." ; dcterms:identifier "freebase" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:freebase.deleted-triples, kgr:freebase.docs, kgr:freebase.rdf, kgr:freebase.wikidata-mappings, kgr:proton.ontology ; schema1:name "Freebase" ; skos:altLabel "Metaweb Freebase" ; skos:inScheme "general" ; adms:status "Inactive" ; foaf:homepage . kgr:fypo a schema1:Ontology ; rdfs:label "Fission Yeast Phenotype Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "FYPO is a formal ontology of phenotypes observed in fission yeast." ; dcterms:identifier "fypo" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:fypo.obo, kgr:fypo.owl, kgr:sri-reference-kg.graph ; schema1:identifier "fypo" ; schema1:name "Fission Yeast Phenotype Ontology" ; doap:repository ; skos:inScheme "phenotype" ; adms:status "Active" ; foaf:homepage . kgr:gad a schema1:DataSource ; rdfs:label "Genetic Association Database" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Genetic Association Database (GAD) was an archive of human genetic association studies compiled from peer-reviewed literature, cataloging reported links between genes and complex diseases or phenotypes. Developed and hosted at the U.S. National Institutes of Health (NIH), it aimed to support standardized analysis of gene-disease associations. The resource has been archived and is no longer maintained or updated, and its original web portal is no longer reachable. GAD served as an upstream primary source for downstream resources such as PharmDB." ; dcterms:identifier "gad" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:gad.publication, kgr:pharmdb.graph ; schema1:name "Genetic Association Database" ; skos:inScheme "clinical", "genome-wide association studies", "genomics", "phenotype" ; adms:status "Inactive" ; foaf:homepage . kgr:gadm a schema1:DataSource ; rdfs:label "GADM" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "GADM (Database of Global Administrative Areas) provides maps and spatial data of administrative boundaries for all countries and their sub-divisions. The current version (4.1) delimits over 400,000 administrative areas across multiple levels, from countries down to local divisions. The polygons are distributed for download by country or for the entire world in several geospatial formats. GADM is used as an upstream source of administrative boundary data by projects such as KnowWhereGraph." ; dcterms:identifier "gadm" ; dcterms:license "GADM license (free for academic/non-commercial use)" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:gadm.download_country, kgr:gadm.download_world, kgr:gadm.metadata, kgr:knowwheregraph.graph ; schema1:name "GADM" ; skos:altLabel "Database of Global Administrative Areas" ; skos:inScheme "environment", "general", "geographic information systems", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:gallont a schema1:Ontology ; rdfs:label "Plant Gall Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Ontology of plant gall phenotypes. Plant galls are novel plant structures, generated by plants in response to biotic stressors. This ontology is used to annotate gall phenotypes (e.g., their colors, textures, sizes, locations on the plant) in a semantic way, in order to facilitate discoveries about the genetic and physiologic mechanisms responsible for such phenotypes. The ontology can also be used as a controlled vocabulary for natural language descriptions of plant galls." ; dcterms:identifier "gallont" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:gallont.kg-bioportal, kgr:gallont.obo, kgr:gallont.owl ; schema1:name "Plant Gall Ontology" ; doap:repository ; skos:inScheme "organisms", "phenotype", "plants" ; adms:status "Active" ; foaf:homepage . kgr:gard a schema1:DataSource ; rdfs:label "Genetic and Rare Diseases Information Center" ; dcterms:created "2026-02-26T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Genetic and Rare Diseases Information Center provides free, reliable, and easy-to-understand information and resources about rare and genetic diseases." ; dcterms:identifier "gard" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:gard.portal, kgr:genecards.web.interface, kgr:medgen.csv, kgr:medgen.id-mappings, kgr:ncatsgardkg.graph, kgr:obo-db-ingest.gard.json, kgr:obo-db-ingest.gard.obo, kgr:obo-db-ingest.gard.owl, kgr:obo-db-ingest.gard.tsv ; schema1:name "Genetic and Rare Diseases Information Center" ; skos:inScheme "biomedical", "rare disease" ; adms:status "Active" ; foaf:homepage . kgr:gaz a schema1:Ontology ; rdfs:label "Gazetteer" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A gazetteer constructed on ontological principles. The countries are actively maintained." ; dcterms:identifier "gaz" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:gaz.gaz-countries.owl, kgr:gaz.obo, kgr:gaz.owl, kgr:pavs-kg.api, kgr:pavs-kg.phenopackets, kgr:pavs-kg.portal, kgr:pavs-kg.sparql ; schema1:name "Gazetteer" ; doap:repository ; skos:inScheme "environment", "geographic information systems" ; adms:status "Active" ; foaf:homepage . kgr:gcmd a schema1:DataSource ; rdfs:label "NASA Global Change Master Directory (GCMD) Keywords" ; dcterms:created "2026-07-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Global Change Master Directory (GCMD) Keywords are NASA's hierarchical controlled vocabulary of Earth science keywords, covering science topics, instruments, platforms, data centers, locations, and related concepts. GCMD Keywords are widely used to describe and discover Earth science datasets and serve as the taxonomic backbone for climate metadata." ; dcterms:identifier "gcmd" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:climatemodelskg.graph, kgr:gcmd.keywords ; schema1:name "NASA Global Change Master Directory (GCMD) Keywords" ; skos:inScheme "environment", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:gdc a schema1:DataSource ; rdfs:label "National Cancer Institute Genomic Data Commons Data Portal" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The NCI Genomic Data Commons (GDC) is a data sharing platform promoting precision medicine in oncology by providing unified access to harmonized cancer genomic and clinical data from major cancer research programs including TCGA and TARGET, processed with standardized bioinformatics pipelines to enable direct comparison and integrated analysis." ; dcterms:identifier "gdc" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:gdc.api, kgr:gdc.data-transfer-tool, kgr:gdc.portal ; schema1:identifier "gdc" ; schema1:name "National Cancer Institute Genomic Data Commons Data Portal" ; skos:altLabel "GDC", "Genomic Data Commons" ; skos:inScheme "biomedical", "cancer", "clinical", "genomics", "precision medicine" ; adms:status "Active" ; foaf:homepage . kgr:gdsc a schema1:DataSource ; rdfs:label "Genomics of Drug Sensitivity in Cancer" ; dcterms:created "2025-05-28T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Genomics of Drug Sensitivity in Cancer (GDSC) is a database and resource that characterizes cancer cell lines and their responses to anti-cancer drugs. It contains drug screening data for over 1000 cancer cell lines with hundreds of compounds, as well as genomic feature data such as mutations, copy number variations, methylation, and gene expression. The aim is to identify molecular features of cancers that predict response to anti-cancer drugs." ; dcterms:identifier "gdsc" ; dcterms:isReferencedBy , , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:bioteque.embeddings, kgr:cellminer.cellminercdb, kgr:cellmodelpassports.gdsc2_dose_response, kgr:depmap.drug_sensitivity, kgr:gdsc.site, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:multiomics-kp.graph, kgr:pharmacodb.api, kgr:pharmacodb.documentation, kgr:pharmacodb.portal, kgr:service-kp.trapi, kgr:spoke-okn.graph, kgr:spoke.graph ; schema1:identifier "gdsc" ; schema1:name "Genomics of Drug Sensitivity in Cancer" ; doap:repository ; skos:inScheme "biomedical", "cancer", "drug discovery", "genomics", "high-throughput screening", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:gecko a schema1:Ontology ; rdfs:label "Genomics Cohorts Knowledge Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology to represent genomics cohort attributes" ; dcterms:identifier "gecko" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:gecko.kg-bioportal, kgr:gecko.owl ; schema1:name "Genomics Cohorts Knowledge Ontology" ; doap:repository ; skos:inScheme "biomedical", "genomics", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:gelinea a schema1:DataSource ; rdfs:label "GeLiNEA" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Gene-List Network Enrichment Analysis (GeLiNEA) is a computational tool that evaluates the significance of connections between a gene list (e.g., from screening experiments) and curated gene sets (e.g., MSigDB) within protein-protein association networks (e.g., STRING). It uses a null model of degree-preserving random gene lists to assess statistical significance of network connections, supporting pathway enrichment analysis and functional interpretation of experimental gene lists." ; dcterms:identifier "gelinea" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:gelinea.tool, kgr:molepro.api, kgr:molepro.catalog, kgr:molepro.graph.edges, kgr:molepro.graph.nodes, kgr:molepro.trapi ; schema1:identifier "gelinea" ; schema1:name "GeLiNEA" ; doap:repository ; skos:altLabel "GeLiNEA", "Gene-List Network Enrichment Analysis" ; skos:inScheme "genomics", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:gemscript a schema1:DataSource ; rdfs:label "Gemscript" ; dcterms:created "2026-04-10T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Gemscript is a medication and device terminology used primarily within the UK's Vision 3 general practice software. Maintained by RESIP UK and integrated with dm+d-aligned descriptions, Gemscript provides unique internal drug identifiers and associated prescribing metadata used to select, classify, and manage medicines and appliances in active clinical workflows. Although Gemscript remains in active operational use, its distribution appears to occur through Vision update channels rather than a single public bulk-download site." ; dcterms:identifier "gemscript" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:athena.vocabularies, kgr:gemscript.bulletin, kgr:gemscript.documentation ; schema1:name "Gemscript" ; skos:altLabel "Gemscript Drug Dictionary", "GemscriptDrug" ; skos:inScheme "biomedical", "clinical", "clinical coding", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:genage a schema1:DataSource ; rdfs:label "GenAge Database of Ageing-Related Genes" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "GenAge is a curated database of genes related to ageing and longevity, part of the Human Ageing Genomic Resources (HAGR). It includes genes directly related to human ageing plus candidate genes from model organisms (yeast, worms, flies, mice), manually curated by experts to ensure high-quality content." ; dcterms:identifier "genage" ; dcterms:isReferencedBy , , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , ; schema1:hasPart kgr:genage.human, kgr:genage.human.search, kgr:genage.models, kgr:genage.models.search ; schema1:identifier "genage" ; schema1:name "GenAge Database of Ageing-Related Genes" ; skos:altLabel "GenAge", "The Aging Gene Database" ; skos:inScheme "aging", "biological systems", "biomedical", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:gencc a schema1:DataSource ; rdfs:label "The Gene Curation Coalition (GenCC)" ; dcterms:created "2025-11-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Gene Curation Coalition (GenCC) is a global collaborative effort to harmonize gene-disease validity curation across multiple expert organizations and clinical testing laboratories. GenCC brings together leading resources including ClinGen, OMIM, Orphanet, DECIPHER, Genomics England PanelApp, and multiple clinical diagnostic laboratories to standardize terminology and share gene-disease validity assertions publicly. The coalition was formed in 2018 to address the lack of universal standards and terminologies for defining gene-disease relationships used in genomic medicine and research. Through a modified Delphi survey involving the international genetics community, GenCC established consensus terminology for grading gene-disease validity, including standardized terms such as Definitive, Strong, Moderate, Limited, Disputed Evidence, Refuted Evidence, No Known Disease Relationship, and Animal Model Only. The GenCC database provides curated gene-disease validity assertions with a focus on monogenic Mendelian diseases, including information on mode of inheritance, classification confidence level, supporting evidence, and links to detailed curations from member organizations." ; dcterms:identifier "gencc" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:dbnsfp.academic, kgr:dbnsfp.commercial, kgr:gencc.database, kgr:gencc.downloads, kgr:gencc.search_interface, kgr:genetics-kp.graph, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:translator.geneticskp.graph ; schema1:identifier "gencc" ; schema1:name "The Gene Curation Coalition (GenCC)" ; skos:inScheme "biomedical", "genomics", "rare disease" ; adms:status "Active" ; foaf:homepage . kgr:gencode a schema1:DataSource ; rdfs:label "GENCODE" ; dcterms:created "2025-11-26T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "GENCODE is a comprehensive and high-quality reference annotation of the human and mouse genomes, providing evidence-based gene annotations including protein-coding genes, long non-coding RNAs, small RNAs, pseudogenes, and other genomic features based on manual curation and computational analysis." ; dcterms:identifier "gencode" ; dcterms:isReferencedBy ; dcterms:modified "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; schema1:about , ; schema1:hasPart kgr:dbnsfp.academic, kgr:dbnsfp.commercial, kgr:gencode.human.gtf, kgr:gencode.mouse.gtf, kgr:gencode.primary, kgr:genecards.web.interface, kgr:genomickb.graph, kgr:hrpimp.data, kgr:hrpimp.huri.psi, kgr:lncrnalyzr.graph, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:name "GENCODE" ; skos:altLabel "Encyclopedia of genes and gene variants", "GENCODE" ; skos:inScheme "genomics" ; adms:status "Active" ; foaf:homepage . kgr:gendr a schema1:DataSource ; rdfs:label "GenDR Database of Dietary Restriction-Related Genes" ; dcterms:created "2025-11-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "GenDR (Database of Dietary Restriction-Related Genes) is a curated database of genes associated with dietary restriction (DR) and its effects on longevity and aging. Part of the Human Ageing Genomic Resources (HAGR), GenDR compiles experimental data on genes whose expression or function is altered by dietary restriction regimens across multiple model organisms. The database includes information on gene function, expression changes, and links to aging-related phenotypes." ; dcterms:identifier "gendr" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:gendr.data, kgr:gendr.expression-signatures, kgr:gendr.web ; schema1:identifier "gendr" ; schema1:name "GenDR Database of Dietary Restriction-Related Genes" ; skos:altLabel "GenDR", "gendr" ; skos:inScheme "aging", "biological systems", "biomedical", "genomics", "nutrition" ; adms:status "Active" ; foaf:homepage . kgr:gene-expression-atlas-okn a schema1:KnowledgeGraph ; rdfs:label "Gene Expression Atlas" ; dcterms:created "2026-03-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Selected studies from the Gene Expression Atlas (https://www.ebi.ac.uk/gxa/home)." ; dcterms:identifier "gene-expression-atlas-okn" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:gene-expression-atlas-okn.graph, kgr:gene-expression-atlas-okn.sparql, kgr:gene-expression-atlas-okn.tpf ; schema1:name "Gene Expression Atlas" ; skos:inScheme "biomedical", "gene expression profiling", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:gene-expression-omnibus a schema1:Aggregator ; rdfs:label "Gene Expression Omnibus (GEO)" ; dcterms:created "2026-07-01T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Gene Expression Omnibus (GEO) is a public functional genomics data repository maintained by the NCBI at the U.S. National Library of Medicine. It archives and freely distributes high-throughput gene expression and other functional genomics datasets, including the single-cell and single-nucleus studies of human pancreatic islets that PanKbase identified and reprocessed." ; dcterms:identifier "gene-expression-omnibus" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:gene-expression-omnibus.portal, kgr:klocd.portal, kgr:nde.graph, kgr:omicsdi.api, kgr:omicsdi.portal, kgr:organoiddb.all-organoid-samples, kgr:organoiddb.general-samples, kgr:organoiddb.organoid-specificity-samples, kgr:pankgraph.graph ; schema1:name "Gene Expression Omnibus (GEO)" ; skos:inScheme "biomedical", "gene expression profiling", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:gene2phenotype a schema1:DataSource ; rdfs:label "Gene2Phenotype" ; dcterms:created "2026-01-23T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A curated gene-disease evidence resource linking genes, variant mechanisms, and clinical phenotypes to support rare disease interpretation." ; dcterms:identifier "gene2phenotype" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:gene2phenotype.api, kgr:gene2phenotype.api.schema, kgr:gene2phenotype.portal, kgr:kg-ebi-gene2pheno.edges.kgx, kgr:kg-ebi-gene2pheno.edges.trapi, kgr:kg-ebi-gene2pheno.nodes.kgx, kgr:service-kp.trapi, kgr:translator.gene2phenotype.graph, kgr:translator.translator_kg.graph ; schema1:identifier "gene2phenotype" ; schema1:name "Gene2Phenotype" ; doap:repository ; skos:altLabel "G2P", "Gene2Phenotype" ; skos:inScheme "biomedical", "genomics", "phenotype", "rare disease" ; adms:status "Active" ; foaf:homepage . kgr:genebass a schema1:DataSource ; rdfs:label "Genebass: Gene-based association summary statistics" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Genebass is a comprehensive resource of exome-based gene-level and single-variant association statistics from 281,852 UK Biobank participants across 3,817 phenotypes, enabling large-scale genotype-phenotype association studies." ; dcterms:identifier "genebass" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:genebass.portal, kgr:genetics-kp.graph, kgr:translator.geneticskp.graph ; schema1:identifier "genebass" ; schema1:name "Genebass: Gene-based association summary statistics" ; skos:altLabel "Gene-based association summary statistics", "Genebass" ; skos:inScheme "biomedical", "genome-wide association studies", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:genecards a schema1:Aggregator ; rdfs:label "GeneCards" ; dcterms:created "2025-09-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "GeneCards is a comprehensive, integrative database that aggregates gene-centric information from over 200 web sources. It provides searchable access to genomic, transcriptomic, proteomic, genetic, clinical and functional information for all annotated and predicted human genes. GeneCards automatically integrates data on gene function, pathways, diseases, variants, expression patterns, protein interactions, and more. The database includes over 443,000 gene entries with rich annotations from sources including HGNC, OMIM, Ensembl, UniProt, NCBI Gene, GTEx, PubMed, and many other major biomedical databases. GeneCards serves as a central hub for human gene information, making it accessible to researchers worldwide." ; dcterms:identifier "genecards" ; dcterms:license ; dcterms:modified "2026-06-27T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:genecards.clinical.trials, kgr:genecards.disease.associations, kgr:genecards.expression.data, kgr:genecards.gene.annotations, kgr:genecards.gene.ontology, kgr:genecards.literature, kgr:genecards.model.organisms, kgr:genecards.pathway.data, kgr:genecards.pharmacogenomics, kgr:genecards.protein.interactions, kgr:genecards.protein.structures, kgr:genecards.variant.data, kgr:genecards.web.interface, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db ; schema1:name "GeneCards" ; skos:inScheme "biomedical", "clinical", "genomics", "pathways", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:genemania a schema1:DataSource ; rdfs:label "GeneMANIA" ; dcterms:created "2025-08-20T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "GeneMANIA is a gene function prediction resource that integrates many types of functional association networks (co-expression, protein and genetic interactions, pathways, co-localization, and shared protein domains) and uses adaptive network weighting with label propagation to prioritize related genes and expand gene lists." ; dcterms:identifier "genemania" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:genemania.cytoscape-app, kgr:genemania.networks, kgr:genemania.web, kgr:pheknowlator.graph ; schema1:name "GeneMANIA" ; doap:repository ; skos:altLabel "GeneMANIA", "GeneMANIA prediction server" ; skos:inScheme "genomics", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:geneorganizer a schema1:DataSource ; rdfs:label "Gene ORGANizer" ; dcterms:created "2026-06-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Gene ORGANizer is a tool and database that links genes to the body parts and organs they affect. It contains curated associations between human genes and the anatomical components in which their phenotypes manifest, supporting analysis of the physiological effects of genes." ; dcterms:identifier "geneorganizer" ; dcterms:isReferencedBy ; dcterms:modified "2026-06-17T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:genecards.web.interface, kgr:geneorganizer.site ; schema1:name "Gene ORGANizer" ; skos:inScheme "anatomy and development", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:genepio a schema1:Ontology ; rdfs:label "Genomic Epidemiology Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research foodborne pathogens and associated outbreaks." ; dcterms:identifier "genepio" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:genepio.kg-bioportal, kgr:genepio.owl ; schema1:identifier "genepio" ; schema1:name "Genomic Epidemiology Ontology" ; doap:repository ; skos:inScheme "biomedical", "epidemiology", "infectious disease", "public health" ; adms:status "Active" ; foaf:homepage . kgr:geneprof a schema1:DataSource ; rdfs:label "GeneProf" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "GeneProf was a database resource for gene expression profiles and functional genomics data. The underlying resource is currently inaccessible (404 error), indicating the resource is likely inactive or deprecated." ; dcterms:identifier "geneprof" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:geneprof.translator-wiki ; schema1:identifier "geneprof" ; schema1:name "GeneProf" ; skos:inScheme "gene expression profiling", "genomics" ; adms:status "Inactive" ; foaf:homepage . kgr:genereviews a schema1:DataSource ; rdfs:label "GeneReviews" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "GeneReviews is an expert-authored, peer-reviewed collection of disease descriptions for inherited conditions, covering diagnosis, management and genetic counseling. It is edited at the University of Washington, Seattle and published on the NCBI Bookshelf, with about 890 chapters as of 2026-10-04. NCBI also publishes weekly-updated mapping files linking each chapter to its NCBI Bookshelf id, PubMed id, genes, UniProt accessions and OMIM numbers." ; dcterms:identifier "genereviews" ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:genereviews.genes, kgr:genereviews.genes-diseases, kgr:genereviews.genes-uniprot, kgr:genereviews.omim, kgr:genereviews.portal, kgr:genereviews.readme, kgr:genereviews.titles, kgr:medgen.mgconso, kgr:medgen.mgdef ; schema1:name "GeneReviews" ; skos:altLabel "GR", "GeneReviews®" ; skos:inScheme "biomedical", "clinical", "genomics", "rare disease" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ncbi . kgr:genetics-kp a schema1:KnowledgeGraph ; rdfs:label "Genetics KP" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Genetics KP is a Translator knowledge provider focused on integrating genetic association evidence (including GWAS-derived signals) into a unified framework for gene-disease relationship analysis." ; dcterms:identifier "genetics-kp" ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ars.api, kgr:ars.portal, kgr:genetics-kp.code, kgr:genetics-kp.docs, kgr:genetics-kp.graph, kgr:genetics-kp.trapi, kgr:molepro.api, kgr:molepro.catalog, kgr:molepro.trapi, kgr:translator.geneticskp.graph, kgr:translator.translator_kg.graph ; schema1:identifier "genetics-data-provider" ; schema1:name "Genetics KP" ; doap:repository ; skos:inScheme "biomedical", "genome-wide association studies", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:geno a schema1:Ontology ; rdfs:label "Genotype Ontology" ; dcterms:created "2025-09-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An integrated ontology for representing the genetic variations described in genotypes, and their causal relationships to phenotype and diseases." ; dcterms:identifier "geno" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:chr.model.owl, kgr:geno.kg-bioportal, kgr:geno.owl, kgr:pavs-kg.api, kgr:pavs-kg.phenopackets, kgr:pavs-kg.portal, kgr:pavs-kg.sparql ; schema1:name "Genotype Ontology" ; doap:repository ; skos:inScheme "biological systems", "genetic variation", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:genomernai a schema1:DataSource ; rdfs:label "GenomeRNAi" ; dcterms:created "2026-06-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "GenomeRNAi is a database containing phenotypes from cell-based and in vivo RNA interference (RNAi) screens in Drosophila and Homo sapiens. It also provides a curated resource of RNAi reagents and their predicted specificity and efficiency." ; dcterms:identifier "genomernai" ; dcterms:isReferencedBy ; dcterms:modified "2026-06-17T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:genecards.web.interface, kgr:genomernai.downloads, kgr:genomernai.site ; schema1:name "GenomeRNAi" ; skos:inScheme "genomics", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:genomickb a schema1:KnowledgeGraph ; rdfs:label "GenomicKB" ; dcterms:created "2025-03-20T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Genomic Knowledgebase (GenomicKB) is a database that uses a knowledge graph to consolidate genomic datasets and annotations. GenomicKB integrates data from more than 30 consortia, in which the genomic entities and relationships are represented as diverse nodes and edges with properties." ; dcterms:identifier "genomickb" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:genomickb.graph, kgr:genomickb.site ; schema1:name "GenomicKB" ; skos:inScheme "genomics" ; adms:status "Active" ; foaf:homepage . kgr:genophenoenvo-kg a schema1:KnowledgeGraph ; rdfs:label "GenoPhenoEnvo Knowledge Graph" ; dcterms:created "2025-11-22T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A knowledge graph integrating plant genomics, phenomics, and environmental data to predict gene expression patterns across multiple species under different environmental conditions, particularly drought stress" ; dcterms:identifier "genophenoenvo-kg" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:genophenoenvo-kg.code, kgr:genophenoenvo-kg.data, kgr:genophenoenvo-kg.neo4j ; schema1:name "GenoPhenoEnvo Knowledge Graph" ; skos:inScheme "environment", "genomics", "organisms", "phenotype", "plants", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:geo a schema1:Ontology ; rdfs:label "Geographical Entity Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology of geographical entities" ; dcterms:identifier "geo" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:archs4.human.gene_counts, kgr:archs4.human.transcript_counts, kgr:archs4.mouse.gene_counts, kgr:archs4.mouse.transcript_counts, kgr:archs4.zoo, kgr:chea-kg.graph, kgr:chea-kg.libraries, kgr:chea.libraries, kgr:genemania.networks, kgr:geo.docs, kgr:geo.kg-bioportal, kgr:geo.owl, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:string.cog.links, kgr:string.cog.links.detailed, kgr:string.database, kgr:string.protein.links, kgr:string.protein.links.detailed, kgr:string.protein.links.full, kgr:string.protein.physical.links, kgr:string.protein.physical.links.detailed, kgr:string.protein.physical.links.full ; schema1:name "Geographical Entity Ontology" ; doap:repository ; skos:inScheme "environment", "geographic information systems" ; adms:status "Active" ; foaf:homepage . kgr:geoconnex a schema1:KnowledgeGraph ; rdfs:label "GEOCONNEX" ; dcterms:created "2025-12-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Geoconnex is an open, community-driven knowledge graph linking U.S. hydrologic features to enable seamless water data discovery, access, and collaborative monitoring." ; dcterms:identifier "geoconnex" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:geoconnex.graph, kgr:geoconnex.sparql, kgr:geoconnex.tpf ; schema1:name "GEOCONNEX" ; doap:repository ; skos:inScheme "environment", "water resources" ; adms:status "Active" ; foaf:homepage . kgr:geonames a schema1:DataSource ; rdfs:label "GeoNames" ; dcterms:created "2026-02-26T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "GeoNames is a geographical database covering all countries and providing over eleven million place names through downloads and web services." ; dcterms:identifier "geonames" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ekg.browser, kgr:ekg.rdf, kgr:ekg.sparql, kgr:ekg.ttl, kgr:geonames.api, kgr:geonames.export, kgr:geonames.feature-codes, kgr:obo-db-ingest.geonames.feature.json, kgr:obo-db-ingest.geonames.feature.obo, kgr:obo-db-ingest.geonames.feature.owl, kgr:obo-db-ingest.geonames.feature.tsv, kgr:obo-db-ingest.geonames.json, kgr:obo-db-ingest.geonames.obo, kgr:obo-db-ingest.geonames.owl, kgr:obo-db-ingest.geonames.tsv, kgr:orkg.dump, kgr:proton.ontology, kgr:proton.top ; schema1:name "GeoNames" ; skos:inScheme "environment", "general", "geographic information systems" ; adms:status "Active" ; foaf:homepage . kgr:gff a schema1:DataModel ; rdfs:label "GFF" ; dcterms:created "2025-09-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "GFF (Generic Feature Format, also called General Feature Format) is a standard tab-delimited file format for describing genomic features including genes, transcripts, exons, and other sequence annotations, widely used in genome annotation and bioinformatics. The current version, GFF3 1.26 (August 2020), is maintained by the Sequence Ontology project and requires feature types to be Sequence Ontology terms." ; dcterms:identifier "gff" ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:chr.model.owl, kgr:gff.specification ; schema1:name "GFF" ; doap:repository ; skos:altLabel "GFF", "GFF3", "General Feature Format", "Generic Feature Format" ; skos:inScheme "genomics" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:sequence-ontology . kgr:ghr a schema1:DataSource ; rdfs:label "Genetics Home Reference" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Consumer health resource about genetic conditions from the US National Library of Medicine. This resource has been merged into MedlinePlus Genetics as of 2020." ; dcterms:identifier "ghr" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ghr.conditions, kgr:ghr.gene-catalog, kgr:ghr.portal, kgr:medgen.csv, kgr:medgen.mgdef ; schema1:identifier "ghr" ; schema1:name "Genetics Home Reference" ; skos:altLabel "GHR" ; skos:inScheme "biomedical", "genomics", "rare disease" ; adms:status "Inactive" ; foaf:homepage ; foaf:maker kgr:ncbi . kgr:ginsim-models a schema1:DataSource ; rdfs:label "GINsim Model Repository" ; dcterms:created "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The GINsim model repository collects curated logical (Boolean and multi-valued) models of gene regulatory and signalling networks, maintained by the GINsim team (Claudine Chaouiya, Pedro T. Monteiro, Aurelien Naldi and Denis Thieffry). Its 70 model pages, from a 1995 phage lambda lysis-lysogeny model to a 2024 promyelocytic leukaemia model, cover development, cell cycle, cell fate, immune cell differentiation and cancer signalling in organisms such as Drosophila, yeasts and mammals. Each page gives the taxon, biological process, authors and reference publications, and provides the model in the GINsim zginml format, with SBML-qual files and Jupyter notebooks for some models. The repository is part of the GINsim website, whose content is available under CC BY-NC-SA 4.0 unless stated otherwise." ; dcterms:identifier "ginsim-models" ; dcterms:isReferencedBy , , ; dcterms:license ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ginsim-models.docs, kgr:ginsim-models.github, kgr:ginsim-models.legacy-repository, kgr:ginsim-models.repository, kgr:ginsim-models.sbml-qual, kgr:ginsim-models.software, kgr:ginsim-models.zginml ; schema1:name "GINsim Model Repository" ; doap:repository ; skos:altLabel "GINsim model library", "GINsim models" ; skos:inScheme "biological systems", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:glida a schema1:DataSource ; rdfs:label "GLIDA" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "GLIDA (GPCR-LIgand DAtabase) was a database of G protein-coupled receptors (GPCRs) and their known ligands, built by the PharmacoInformatics Laboratory at Kyoto University for chemical genomics research and GPCR-related drug discovery. It linked biological information on GPCRs with chemical information on their ligands, could be searched from either side, and offered a GPCR-ligand correlation map and analysis tools. Its last listed version was 2.04 (2010-10-10). GLIDA is defunct, and its homepage has returned HTTP 404 since at least 2025. GLIDA was one of the curated databases used as evidence by STITCH." ; dcterms:identifier "glida" ; dcterms:isReferencedBy , ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:glida.manual, kgr:glida.portal, kgr:glida.wayback, kgr:stitch.api, kgr:stitch.downloads, kgr:stitch.portal ; schema1:name "GLIDA" ; skos:altLabel "GPCR-LIgand DAtabase", "GPCR-Ligand Database" ; skos:inScheme "cheminformatics", "chemistry and biochemistry", "drug discovery", "pharmacology" ; adms:status "Inactive" ; foaf:homepage . kgr:glkb a schema1:DataSource ; rdfs:label "GLKB" ; dcterms:created "2025-03-20T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Genomic Literature Knowledge Base (GLKB) is a comprehensive and powerful resource that integrates over 263 million biomedical terms and more than 14.6 million biomedical relationships. This collection is curated from 33 million PubMed abstracts and nine well-established biomedical repositories, offering an unparalleled wealth of knowledge for researchers and practitioners in the field." ; dcterms:identifier "glkb" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:glkb.site ; schema1:name "GLKB" ; skos:inScheme "genomics", "literature", "natural language processing" ; adms:status "Active" ; foaf:homepage . kgr:globi a schema1:KnowledgeGraph ; rdfs:label "Global Biotic Interactions (GloBI)" ; dcterms:created "2025-09-14T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Global Biotic Interactions (GloBI) integrates and normalizes species interaction datasets (e.g., predation, pollination, parasitism, mutualism, host-pathogen) from many primary sources to provide open, queryable access to organism-to-organism interaction records with taxonomic resolution and provenance." ; dcterms:identifier "globi" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , ; schema1:hasPart kgr:emikg.kg, kgr:emikg.sparql, kgr:emikg.web, kgr:globi.api, kgr:globi.bee.interactions, kgr:globi.citations.csv, kgr:globi.citations.tsv, kgr:globi.datasets, kgr:globi.datasets.csv, kgr:globi.datasets.tsv, kgr:globi.docs, kgr:globi.fields.csv, kgr:globi.fields.json, kgr:globi.interactions.csv, kgr:globi.interactions.nq, kgr:globi.interactions.tsv, kgr:globi.neo4j.graphdb, kgr:globi.portal, kgr:globi.refuted_interactions.csv, kgr:globi.refuted_interactions.tsv, kgr:globi.refuted_verbatim_interactions.csv, kgr:globi.refuted_verbatim_interactions.tsv, kgr:globi.release, kgr:globi.taxon_cache.tsv, kgr:globi.taxon_map.tsv, kgr:globi.verbatim_interactions.csv, kgr:globi.verbatim_interactions.tsv ; schema1:name "Global Biotic Interactions (GloBI)" ; skos:inScheme "ecology", "environment", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:glycocoo a schema1:Ontology ; rdfs:label "GlycoConjugate Ontology (GlycoCoO)" ; dcterms:created "2025-10-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Glycoconjugate Ontology (GlycoCoO) is a standard semantic framework for describing and representing glycoproteomics and glycolipidomics data in RDF format. It provides a formal representation of glycoconjugate structures (glycoproteins and glycolipids), their associated metadata including publication information, biological source data, experimental evidence, and abundance ratios. GlycoCoO extends GlycoRDF by creating subclasses of ReferencedCompound including ReferencedGlycoconjugate, ReferencedProtein, and ReferencedLipid, enabling comprehensive annotation of glycan structures attached to proteins and lipids with contextual information such as glycosylation sites, disease associations, tissue and cell line sources, and analytical methods. The ontology supports both complete structural information and compositional data, can represent single glycans or glycoform mixtures at specific sites, and accommodates partially missing site information when no mapping is performed. It has been adopted by major glycoproteomics databases including UniCarbKB, GlyConnect, and GlycoNAVI, enabling federated queries across resources to retrieve integrated information about glycoconjugates from multiple publications and experimental contexts." ; dcterms:identifier "glycocoo" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:glycocoo.bioportal, kgr:glycocoo.kg-bioportal, kgr:glycocoo.ontology, kgr:glycocoo.rdf-samples, kgr:glycocoo.sparql-examples, kgr:glycocoo.wiki, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:name "GlycoConjugate Ontology (GlycoCoO)" ; skos:inScheme "chemistry and biochemistry", "glycomics" ; adms:status "Active" ; foaf:homepage . kgr:glyconavi a schema1:DataSource ; rdfs:label "GlycoNAVI" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "GlycoNAVI is an integrated glycoscience portal that provides searchable glycan structures, glycoproteins, glycosylation sites, glycan-related genes, disease annotations, glycan tools, and GlyCosmos-linked data resources." ; dcterms:identifier "glyconavi" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:glycocoo.rdf-samples, kgr:glyconavi.glycans, kgr:glyconavi.portal ; schema1:name "GlycoNAVI" ; skos:altLabel "Glyco-Database Information Search" ; skos:inScheme "biomedical", "chemistry and biochemistry", "glycomics", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:glyconnect a schema1:DataSource ; rdfs:label "GlyConnect" ; dcterms:created "2025-05-07T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "GlyConnect is a knowledgebase of glycoproteins spanning protein, glycosite and glycan information, with data on various species, tissues, and disease associations." ; dcterms:identifier "glyconnect" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:genecards.web.interface, kgr:glycocoo.rdf-samples, kgr:glyconnect.api.rest, kgr:glyconnect.api.sparql, kgr:glyconnect.compositions, kgr:glyconnect.immunoglobulins, kgr:glyconnect.site ; schema1:name "GlyConnect" ; skos:inScheme "chemistry and biochemistry", "glycomics" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:sib . kgr:glycordf a schema1:Ontology ; rdfs:label "GlycoRDF: An Ontology to Standardize Glycomics Data in RDF" ; dcterms:created "2025-10-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description """GlycoRDF is a standardized ontology for representing glycomics data in Resource Description Framework (RDF) format. It provides a common machine-readable interface for glycomics databases, enabling integration and cross-referencing of glycan structures, biological source information, publications, and experimental data. Developed by an international consortium of glycomics bioinformatics experts, GlycoRDF defines classes and predicates for diverse glycomics data types including glycan sequences, monosaccharide compositions, biological sources, literature references, NMR data, mass spectrometry data, and liquid chromatography-mass spectrometry data. The ontology reuses concepts from established ontologies including UniProt Core, Bibliographic Ontology, Dublin Core Metadata Initiative, and HUPO-PSI Mass Spectrometry Ontology. GlycoRDF has been adopted by major glycomics database providers including CSDB, MonosaccharideDB, GlycomeDB, UniCarbKB, GlycoEpitope, GlycoNAVI, and GlycoProtDB, facilitating semantic web applications and SPARQL queries across heterogeneous glycomics data sources. """ ; dcterms:identifier "glycordf" ; dcterms:isReferencedBy , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:glycocoo.ontology, kgr:glycocoo.rdf-samples, kgr:glycocoo.sparql-examples, kgr:glycocoo.wiki, kgr:glycordf.bioportal, kgr:glycordf.documentation, kgr:glycordf.github, kgr:glycordf.homepage, kgr:glycordf.java-source, kgr:glycordf.kg-bioportal, kgr:glycordf.ontology, kgr:glycordf.wiki, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:name "GlycoRDF: An Ontology to Standardize Glycomics Data in RDF" ; doap:repository ; skos:inScheme "chemistry and biochemistry", "glycomics" ; skos:related "biopragmatics" ; adms:status "Active" ; foaf:homepage . kgr:glygen a schema1:DataSource ; rdfs:label "GlyGen" ; dcterms:created "2025-05-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "GlyGen is an integrated, data-driven resource for glycoproteins, glycans, and carbohydrate-active enzymes, providing researchers with comprehensive, high-quality data on glycobiology." ; dcterms:identifier "glygen" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biomarker.bkg.nodes.biomarker, kgr:cfde-gse.genesets, kgr:cfde-gse.graph, kgr:digcfdekg.graph, kgr:genecards.web.interface, kgr:glygen.api, kgr:glygen.data.site, kgr:glygen.site, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:petagraph.graph, kgr:prokn.glygen.aminoacid.nodes, kgr:prokn.glygen.glycoprotein.glycosylated_at.glycosylationsite.edges, kgr:prokn.glygen.glycoprotein.has_evidence.glycoproteinevidence.edges, kgr:prokn.glygen.glycoprotein.has_pro_entry.gpid2pro.edges, kgr:prokn.glygen.glycoprotein.sequence.isoform.edges, kgr:prokn.glygen.glycoprotein.sequence.protein.edges, kgr:prokn.glygen.glycoproteinevidence.citation.glycoproteincitation.edges, kgr:prokn.glygen.glycosylation.has_enzyme_protein.protein.edges, kgr:prokn.glygen.glycosylationsite.has_saccharide.glytoucan.edges, kgr:prokn.glygen.glycosylationsite.location.glygenlocation.edges, kgr:prokn.glygen.glycosyltransferasereaction.has_enzyme_protein_gr.protein.edges, kgr:prokn.glygen.glygenlocation.has_amino_acid.aminoacid.edges, kgr:prokn.glygen.glygenresidue.attached_by.glycosylation.edges, kgr:prokn.glygen.glygenresidue.has_parent.glygenresidue.edges, kgr:prokn.glygen.glytoucan.has_canonical_residue.glygenresidue.edges, kgr:prokn.glygen.glytoucan.has_glycosequence.gyglycosequence.edges, kgr:prokn.glygen.glytoucan.has_motif.glycanmotif.edges, kgr:prokn.glygen.glytoucan.is_from_source.glygensrc.edges, kgr:prokn.glygen.glytoucan.synthesized_by.glycosyltransferasereaction.edges, kgr:prokn.glygen.protein.has_isoform.isoform.edges, kgr:prokn.glygen.protein.has_isoform.protein.edges, kgr:pubchem.substances.asn, kgr:pubchem.substances.sdf ; schema1:name "GlyGen" ; doap:repository ; skos:inScheme "chemistry and biochemistry", "glycomics" ; adms:status "Active" ; foaf:homepage . kgr:glytoucan a schema1:DataSource ; rdfs:label "GlyTouCan" ; dcterms:created "2026-06-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "GlyTouCan is the international glycan structure repository, assigning globally unique and persistent accession numbers to registered glycan structures. It accepts structures ranging in resolution from monosaccharide composition to fully defined structures, providing a freely available, uncurated registry that serves as a common reference for glycan identifiers across glycoscience resources." ; dcterms:identifier "glytoucan" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:glyconavi.glycans, kgr:glytoucan.api, kgr:glytoucan.portal, kgr:glytoucan.sparql, kgr:rdf-portal.sparql.primary ; schema1:name "GlyTouCan" ; skos:altLabel "GlyTouCan" ; skos:inScheme "chemistry and biochemistry", "glycomics", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:gmrepo a schema1:DataSource ; rdfs:label "GMrepo" ; dcterms:created "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "GMrepo (Gut Microbiome Data Repository) is a curated and consistently annotated database of human gut metagenomes and 16S rRNA amplicon datasets. Samples are grouped by manually curated host phenotype (health and disease, coded with MeSH) and their microbial contents are re-annotated with a common pipeline so that projects can be compared across datasets. Version 3 (2026) holds 890 projects and 118,965 runs, 302 annotated diseases and 1,299 marker taxa for 167 phenotype pairs, with a Marker Consistency Index summarizing how reproducible each marker is across studies. Data are served through the web site and a RESTful API." ; dcterms:identifier "gmrepo" ; dcterms:isReferencedBy , , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:gmrepo.api, kgr:gmrepo.site, kgr:micromap.api ; schema1:name "GMrepo" ; skos:inScheme "biomedical", "microbiology", "microbiome" ; adms:status "Active" ; foaf:homepage . kgr:gnbr a schema1:KnowledgeGraph ; rdfs:label "GNBR" ; dcterms:created "2025-08-12T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Global Network of Biomedical Relationships (GNBR) is a large-scale biomedical knowledge graph derived from literature. GNBR uses text mining of PubMed abstracts to extract typed relationships between genes, diseases and drugs/chemicals, organizing them into semantic themes suitable for link prediction and downstream applications such as drug repurposing. GNBR has been widely used as a text-derived KG resource and is available via GitHub and Zenodo." ; dcterms:identifier "gnbr" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:drkg.graph, kgr:gnbr.graph, kgr:pharmkg.graph ; schema1:identifier "gnbr" ; schema1:name "GNBR" ; doap:repository ; skos:inScheme "biomedical", "literature", "natural language processing" ; adms:status "Active" ; foaf:homepage . kgr:gnis a schema1:DataSource ; rdfs:label "Geographic Names Information System" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Geographic Names Information System (GNIS) is the U.S. federal and national standard for geographic nomenclature, serving as the official repository of names and attributes for physical and cultural geographic features across the United States, its territories, and Antarctica. It is developed and maintained by the U.S. Geological Survey's National Geospatial Program in support of the U.S. Board on Geographic Names. For each feature it records the official name, feature class, state and county, geographic coordinates, elevation, historical and variant names, and related metadata. GNIS is the upstream source for the KnowWhereGraph geospatial knowledge graph." ; dcterms:identifier "gnis" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:gnis.download, kgr:gnis.linkeddata, kgr:gnis.search, kgr:knowwheregraph.graph ; schema1:name "Geographic Names Information System" ; skos:inScheme "environment", "general", "geographic information systems", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:gno a schema1:Ontology ; rdfs:label "Glycan Naming and Subsumption Ontology (GNOme)" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "GlyTouCan provides stable accessions for glycans described at varyious degrees of characterization, including compositions (no linkage) and topologies (no carbon bond positions or anomeric configurations). GNOme organizes these stable accessions for interative browsing, for text-based searching, and for automated reasoning with well-defined characterization levels." ; dcterms:identifier "gno" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:gno.json, kgr:gno.obo, kgr:gno.owl ; schema1:name "Glycan Naming and Subsumption Ontology (GNOme)" ; doap:repository ; skos:inScheme "chemistry and biochemistry", "glycomics" ; adms:status "Active" ; foaf:homepage . kgr:gnomad a schema1:DataSource ; rdfs:label "Genome Aggregation Database (gnomAD)" ; dcterms:created "2026-08-12T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A reference catalogue of human genetic variation, aggregating and harmonizing exome and genome sequencing data from large-scale sequencing projects to provide population allele frequencies and gene-level constraint metrics." ; dcterms:hasVersion "4.1.1" ; dcterms:identifier "gnomad" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:cadd.gnomad-indels.grch38, kgr:dbnsfp.academic, kgr:dbnsfp.commercial, kgr:gnomad.api, kgr:gnomad.browser, kgr:gnomad.downloads, kgr:myvariant.api, kgr:pavs-kg.api, kgr:pavs-kg.phenopackets, kgr:pavs-kg.portal, kgr:pavs-kg.sparql, kgr:sniff.federation-nodes ; schema1:name "Genome Aggregation Database (gnomAD)" ; skos:altLabel "gnomAD" ; skos:inScheme "biomedical", "genetic variation", "genomics", "population genetics", "precision medicine" ; adms:status "Active" ; foaf:homepage . kgr:gnps a schema1:DataSource ; rdfs:label "Global Natural Products Social Molecular Networking" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Global Natural Products Social Molecular Networking (GNPS) is a web-based mass spectrometry ecosystem and open-access knowledge base for organizing, sharing, analyzing, and annotating raw, processed, or identified tandem mass spectrometry data." ; dcterms:identifier "gnps" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:gnps.docs, kgr:gnps.portal, kgr:gnps.spectral_libraries, kgr:kg-enp.graph, kgr:metabokg.graph, kgr:metabokg.rml_mappings, kgr:omicsdi.api, kgr:omicsdi.portal, kgr:redu.dashboard ; schema1:name "Global Natural Products Social Molecular Networking" ; doap:repository ; skos:altLabel "GNPS", "Global Natural Products Social Molecular Networking" ; skos:inScheme "chemistry and biochemistry", "metabolomics", "microbiology", "natural products" ; adms:status "Active" ; foaf:homepage . kgr:go a schema1:Ontology ; rdfs:label "Gene Ontology" ; dcterms:created "2025-03-16T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology for describing the function of genes and gene products" ; dcterms:identifier "go" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:alzkb.browser, kgr:alzkb.data, kgr:babel.compendia, kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:bioregistry.registry.json, kgr:bioregistry.sssom, kgr:bioteque.embeddings, kgr:cacao.api, kgr:cacao.go-annotations, kgr:cacao.gowiki, kgr:cacao.portal, kgr:cam-kp.go-cams, kgr:cancer-genome-interpreter.clinicalkg.graph, kgr:chr.model.owl, kgr:clinicalkg.graph, kgr:ctd.chem_go_enriched, kgr:ctd.pheno_term_ixns, kgr:ctd.phenotype_disease_bp, kgr:ctd.phenotype_disease_cc, kgr:ctd.phenotype_disease_mf, kgr:dbnsfp.academic, kgr:dbnsfp.commercial, kgr:disprot.downloads, kgr:disprot.idpo, kgr:drugmechdb.graph, kgr:eco-kg.graph, kgr:efo.obo, kgr:efo.owl, kgr:enrichr-kg.edges-csv, kgr:enrichr-kg.graph, kgr:genecards.gene.ontology, kgr:genecards.web.interface, kgr:genomickb.graph, kgr:genophenoenvo-kg.data, kgr:go.amigo, kgr:go.api, kgr:go.extensions.go-plus.json, kgr:go.extensions.go-plus.owl, kgr:go.extensions.go-taxon-groupings.owl, kgr:go.extensions.go-taxon-subsets.owl, kgr:go.go-base.owl, kgr:go.go-basic.json, kgr:go.go-basic.obo, kgr:go.gocams.ttl, kgr:go.json, kgr:go.kg-bioportal, kgr:go.obo, kgr:go.owl, kgr:go.snapshot.go.obo, kgr:go.snapshot.go.owl, kgr:goa.ftp, kgr:goa.human, kgr:goa.mapping-files, kgr:goa.mouse, kgr:goa.pdb, kgr:goa.proteomes, kgr:goa.quickgo, kgr:goa.uniprot, kgr:gp-kg.graph, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:hetionet.data.edges, kgr:hetionet.data.json, kgr:hetionet.data.neo4j, kgr:hetionet.data.nodes, kgr:hetionet.hetnetpy, kgr:hetionet.neo4j, kgr:hetionet.search, kgr:humannet.network, kgr:humannet.network.symbol, kgr:indra.cogex.code, kgr:interpro.interpro2go, kgr:kg-covid-19.graph, kgr:kg-idg.graph, kgr:kg-microbe.graph.biomedical, kgr:kg-microbe.graph.biomedical-function, kgr:kg-microbe.graph.core, kgr:kg-microbe.graph.function, kgr:kg-microbe.graph.raw, kgr:kg-monarch.graph, kgr:kg-monarch.graph.duckdb, kgr:kg-monarch.graph.jsonl, kgr:kg-monarch.graph.jsonl.edges, kgr:kg-monarch.graph.jsonl.nodes, kgr:kg-monarch.graph.neo4j, kgr:kg-monarch.graph.neo4j.edges, kgr:kg-monarch.graph.neo4j.nodes, kgr:kg-monarch.graph.rdf, kgr:kg-predict.gpkg, kgr:lncrnalyzr.graph, kgr:mechreponet.kg, kgr:medgen.csv, kgr:medgen.mgdef, kgr:medkg.site, kgr:microbiomekg.api, kgr:msigdb.downloads.human, kgr:msigdb.downloads.mouse, kgr:mygene.api, kgr:ncatsgardkg.graph, kgr:ncbigene.gene2go, kgr:neo.model, kgr:neo.obo, kgr:np-kg.graph.networkx, kgr:np-kg.graph.tsv, kgr:obo-db-ingest.bigg.compartment.sssom.tsv, kgr:oma.mapping.go, kgr:openpredict.api, kgr:openpredict.predictions, kgr:oregano.graph, kgr:orkg.dump, kgr:pavs-kg.api, kgr:pavs-kg.portal, kgr:pavs-kg.sparql, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:pheknowlator.graph, kgr:primekg.graph, kgr:prokn.go.goterm.is_a.goterm.edges, kgr:prokn.go.protein.acts_upstream_of.goterm.edges, kgr:prokn.go.protein.acts_upstream_of_negative_effect.goterm.edges, kgr:prokn.go.protein.acts_upstream_of_or_within.goterm.edges, kgr:prokn.go.protein.acts_upstream_of_or_within_negative_effect.goterm.edges, kgr:prokn.go.protein.acts_upstream_of_or_within_positive_effect.goterm.edges, kgr:prokn.go.protein.acts_upstream_of_positive_effect.goterm.edges, kgr:prokn.go.protein.colocalizes_with.goterm.edges, kgr:prokn.go.protein.contributes_to.goterm.edges, kgr:prokn.go.protein.enables.goterm.edges, kgr:prokn.go.protein.involved_in.goterm.edges, kgr:prokn.go.protein.is_active_in.goterm.edges, kgr:prokn.go.protein.located_in.goterm.edges, kgr:prokn.go.protein.not_acts_upstream_of_or_within.goterm.edges, kgr:prokn.go.protein.not_acts_upstream_of_or_within_negative_effect.goterm.edges, kgr:prokn.go.protein.not_colocalizes_with.goterm.edges, kgr:prokn.go.protein.not_contributes_to.goterm.edges, kgr:prokn.go.protein.not_enables.goterm.edges, kgr:prokn.go.protein.not_involved_in.goterm.edges, kgr:prokn.go.protein.not_is_active_in.goterm.edges, kgr:prokn.go.protein.not_located_in.goterm.edges, kgr:prokn.go.protein.not_part_of.goterm.edges, kgr:prokn.go.protein.part_of.goterm.edges, kgr:proteomehd.data, kgr:reactome.go-associations.txt, kgr:reactome.pathways.go-terms.txt, kgr:rna-kg.kg.edges, kgr:rna-kg.kg.neo4j, kgr:rna-kg.kg.nodes, kgr:rtx-kg2.graph.edges, kgr:rtx-kg2.graph.nodes, kgr:rtx-kg2.neo4j, kgr:service-kp.trapi, kgr:spoke-okn.graph, kgr:spoke.graph, kgr:sri-reference-kg.graph, kgr:string.cog.links, kgr:string.cog.links.detailed, kgr:string.database, kgr:string.protein.links, kgr:string.protein.links.detailed, kgr:string.protein.links.full, kgr:string.protein.physical.links, kgr:string.protein.physical.links.detailed, kgr:string.protein.physical.links.full, kgr:swisslipid.go, kgr:unibiomap.auxs, kgr:unibiomap.go_desc, kgr:unibiomap.links, kgr:unibiomap.pred, kgr:unibiomap.pred.full ; schema1:identifier "go" ; schema1:name "Gene Ontology" ; doap:repository ; skos:altLabel "GO" ; skos:inScheme "biological systems" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:gene-ontology-consortium . kgr:go-cam a schema1:DataModel ; rdfs:label "Gene Ontology Causal Activity Modeling (GO-CAM)" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A structured framework for integrating Gene Ontology annotations into computable models of biological functions." ; dcterms:identifier "go-cam" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:go-cam.api, kgr:go-cam.browser, kgr:go-cam.linkml-schema, kgr:go-cam.minerva, kgr:go-cam.model, kgr:go-cam.noctua, kgr:translator.go_cam.graph, kgr:translator.translator_kg.graph ; schema1:identifier "go-cam" ; schema1:name "Gene Ontology Causal Activity Modeling (GO-CAM)" ; doap:repository ; skos:inScheme "genomics", "pathways", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:goa a schema1:DataSource ; rdfs:label "GOA" ; dcterms:created "2025-10-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description """The Gene Ontology Annotation (GOA) Database provides high-quality Gene Ontology (GO) annotations to proteins in the UniProt Knowledgebase (UniProtKB), RNA molecules from RNAcentral, and protein complexes from the Complex Portal. GOA files contain a mixture of manual annotations supplied by members of the Gene Ontology Consortium and computationally assigned GO terms describing gene products. All annotations are clearly indicated by associated evidence codes with links to source data. Files are released approximately every four weeks in coordination with UniProtKB releases. """ ; dcterms:identifier "goa" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:automat.humangoa, kgr:automat.robokopkg, kgr:automat.viralproteome, kgr:goa.documentation, kgr:goa.ftp, kgr:goa.human, kgr:goa.mapping-files, kgr:goa.mouse, kgr:goa.pdb, kgr:goa.portal, kgr:goa.proteomes, kgr:goa.quickgo, kgr:goa.uniprot, kgr:gp-kg.graph, kgr:neo.model, kgr:neo.obo, kgr:pavs-kg.api, kgr:pavs-kg.portal, kgr:pavs-kg.sparql, kgr:proteomehd.data, kgr:sri-reference-kg.graph, kgr:translator.goa.graph, kgr:translator.translator_kg.graph ; schema1:identifier "goa" ; schema1:name "GOA" ; skos:inScheme "genomics", "proteomics" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ebi . kgr:goldbook a schema1:DataSource ; rdfs:label "IUPAC Gold Book" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The IUPAC Compendium of Chemical Terminology, known as the Gold Book, collects authoritative definitions of chemical terms from IUPAC recommendations published in Pure and Applied Chemistry and the other IUPAC Colour Books, ratified by IUPAC's Interdivisional Committee on Terminology, Nomenclature and Symbols. Version 5.0.0 (5th edition, 2025) holds 14,588 terms, each with a stable code and DOI, and the site offers an API for downloading single terms or the whole vocabulary as JSON or XML." ; dcterms:hasVersion "5.0.0" ; dcterms:identifier "goldbook" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:goldbook.api, kgr:goldbook.portal, kgr:goldbook.sources.json, kgr:goldbook.terms.json, kgr:goldbook.terms.xml, kgr:obo-db-ingest.goldbook.json, kgr:obo-db-ingest.goldbook.obo, kgr:obo-db-ingest.goldbook.owl, kgr:obo-db-ingest.goldbook.sssom.tsv, kgr:obo-db-ingest.goldbook.tsv ; schema1:name "IUPAC Gold Book" ; skos:altLabel "Compendium of Chemical Terminology", "Gold Book", "IUPAC Compendium of Chemical Terminology" ; skos:inScheme "chemistry and biochemistry" ; adms:status "Active" ; foaf:homepage . kgr:goldterms a schema1:DataModel ; rdfs:label "GOLD Environmental Paths" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Translation of JGI GOLD (Genomes OnLine Database) ecosystem classification paths to OWL, plus mappings to MIxS and environment ontologies like ENVO." ; dcterms:identifier "goldterms" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:goldterms.bioportal, kgr:goldterms.data.owl, kgr:goldterms.definitions.yaml, kgr:goldterms.kg-bioportal, kgr:metatraits.gtdb.family-summary, kgr:metatraits.gtdb.genus-summary, kgr:metatraits.gtdb.species-summary, kgr:metatraits.ncbi.family-summary, kgr:metatraits.ncbi.genus-summary, kgr:metatraits.ncbi.species-summary, kgr:metatraits.traits ; schema1:name "GOLD Environmental Paths" ; doap:repository ; skos:inScheme "environment", "genomics", "microbiology" ; skos:related "biopragmatics", "core" ; adms:status "Active" ; foaf:homepage . kgr:gomapman a schema1:DataSource ; rdfs:label "GoMapMan" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "GoMapMan is a manually curated, open database that integrates, consolidates, and visualizes plant gene functional annotations organized within the MapMan ontology, a hierarchical scheme of functional \"bins\" tailored to plant biology. It maps genes to MapMan bins across several crop and model plant species, including Arabidopsis, potato, and tomato, and harmonizes annotations drawn from multiple sources into a single consolidated, expert-reviewed resource. The portal provides interactive browsing and visualization of the ontology and gene-to-bin mappings, and its curated mappings are widely reused to annotate genes in plant systems-biology and transcriptomics analyses. It is an upstream source for the Stress Knowledge Map (SKM)." ; dcterms:identifier "gomapman" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:gomapman.kg-bioportal, kgr:gomapman.portal, kgr:skm.ckn.v1.annotations, kgr:skm.ckn.v1.graph, kgr:skm.ckn.v2.annotations, kgr:skm.ckn.v2.graph, kgr:skm.pss.live.boolnet.annotations, kgr:skm.pss.live.boolnet.graph, kgr:skm.pss.live.dot, kgr:skm.pss.live.sbgn, kgr:skm.pss.live.sbml, kgr:skm.pss.live.sif.dinar.graph, kgr:skm.pss.live.sif.original.annotations, kgr:skm.pss.live.sif.original.graph, kgr:skm.pss.live.sif.projection.annotations, kgr:skm.pss.live.sif.projection.graph ; schema1:name "GoMapMan" ; skos:inScheme "agriculture", "genomics", "organisms", "pathways", "plants", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:google-reviews a schema1:DataSource ; rdfs:label "Google Reviews" ; dcterms:created "2026-07-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Google Reviews are user-contributed ratings and free-text reviews of places and organizations, surfaced through Google Maps and Google Business Profiles. Each review includes a review identifier, a star rating, review text, and author information associated with a named place or service." ; dcterms:identifier "google-reviews" ; dcterms:modified "2026-07-03T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:dreamkg.graph, kgr:google-reviews.site ; schema1:name "Google Reviews" ; skos:inScheme "general", "public health" ; adms:status "Active" ; foaf:homepage . kgr:gp-kg a schema1:KnowledgeGraph ; rdfs:label "GP-KG" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A knowledge graph for drug repurposing" ; dcterms:identifier "gp-kg" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:gp-kg.graph, kgr:gp-kg.process.kg-predict ; schema1:name "GP-KG" ; doap:repository ; skos:inScheme "biomedical", "drug discovery", "drug repositioning" ; adms:status "Active" ; foaf:homepage . kgr:gpcrdb a schema1:DataSource ; rdfs:label "GPCRdb" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "GPCRdb is an information system for G protein-coupled receptors (GPCRs) that provides reference sequences and alignments with generic residue numbering, manually annotated experimental structures and state-specific structure models, ligands and bioactivities, receptor mutations, drugs and targets, signaling protein data, and web tools for structure, sequence and ligand analysis. It was started in 1993 and has been maintained by the David Gloriam group at the University of Copenhagen since 2013. Data are available through the web portal and a REST API under CC BY 4.0, and the source code is released under the Apache 2.0 license." ; dcterms:identifier "gpcrdb" ; dcterms:isReferencedBy , , ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:gpcrdb.api, kgr:gpcrdb.code, kgr:gpcrdb.data, kgr:gpcrdb.docs, kgr:gpcrdb.portal ; schema1:name "GPCRdb" ; doap:repository ; skos:altLabel "GPCR database", "GPCRDB" ; skos:inScheme "drug discovery", "pharmacology", "protein structure", "proteomics" ; skos:notation "FAIRsharing.e4n3an" ; adms:status "Active" ; foaf:homepage . kgr:gpmdb a schema1:DataSource ; rdfs:label "Global Proteome Machine Database" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Global Proteome Machine Database (GPMDB) stores peptide and protein identifications from tandem mass spectrometry experiments, reprocessed with the Global Proteome Machine pipeline and the X! Tandem search engine. It reports observed peptide and protein evidence, post-translational modifications and single amino acid variants across a very large number of public datasets, mapped mainly to Ensembl protein accessions. Since 2025-02-19 the GPMDB web interface rejects queries from US IP addresses; the REST API still answered from a US address on 2026-10-04." ; dcterms:identifier "gpmdb" ; dcterms:isReferencedBy , ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:gpmdb.api, kgr:gpmdb.portal, kgr:gpmdb.xtandem, kgr:omicsdi.api, kgr:omicsdi.portal ; schema1:name "Global Proteome Machine Database" ; skos:altLabel "GPM", "GPMDB", "The Global Proteome Machine" ; skos:inScheme "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:greenclaims a schema1:DataSource ; rdfs:label "GreenClaims" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "GreenClaims is a third-party-verified dataset of corporate environmental claims and greenwashing cases, compiled from reputable news sources and regulatory records such as advertising-standards (e.g., ASA) rulings. Each record pairs a company's environmental claim with documented greenwashing allegations, company descriptions, certificates, and source URLs. It was introduced in Mattia Fornasiero's work on greenwashing detection and is used by knowledge-graph frameworks such as EmeraldGraph and EmeraldMind for explainable greenwashing detection." ; dcterms:identifier "greenclaims" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:emeraldgraph.graph-json, kgr:greenclaims.dataset ; schema1:name "GreenClaims" ; skos:inScheme "environment", "literature", "public health", "sustainability" ; adms:status "Inactive" ; foaf:homepage . kgr:greengenes a schema1:DataSource ; rdfs:label "Greengenes2" ; dcterms:created "2025-09-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Greengenes2 is a comprehensive reference database and phylogenetic tree for 16S rRNA gene sequences that unifies microbial data from multiple sources into a single coherent framework. It provides standardized taxonomic assignments and phylogenetic placement for microbiome research and enables consistent analysis across different studies and sequencing platforms." ; dcterms:identifier "greengenes" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:greengenes.ftp, kgr:greengenes.phylogeny, kgr:greengenes.portal, kgr:greengenes.qiime2-plugin, kgr:greengenes.sequences, kgr:greengenes.taxonomy, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db ; schema1:name "Greengenes2" ; doap:repository ; skos:inScheme "microbiology", "microbiome", "organisms", "taxonomy" ; adms:status "Active" ; foaf:homepage . kgr:gro a schema1:Ontology ; rdfs:label "Cereal Plant Gross Anatomy" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Description unavailable." ; dcterms:identifier "gro" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:name "Cereal Plant Gross Anatomy" ; skos:inScheme "anatomy and development", "organisms", "plants" ; adms:status "Inactive" ; foaf:homepage . kgr:gsso a schema1:Ontology ; rdfs:label "Gender, Sex, and Sexual Orientation (GSSO) ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Gender, Sex, and Sexual Orientation (GSSO) ontology has terms for annotating interdisciplinary information concerning gender, sex, and sexual orientation for primary usage in the biomedical and adjacent sciences." ; dcterms:identifier "gsso" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:gsso.json, kgr:gsso.obo, kgr:gsso.owl ; schema1:name "Gender, Sex, and Sexual Orientation (GSSO) ontology" ; doap:repository ; skos:inScheme "biomedical", "organisms", "public health" ; adms:status "Active" ; foaf:homepage . kgr:gtdb a schema1:DataSource ; rdfs:label "Genome Taxonomy Database" ; dcterms:created "2026-02-26T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Genome Taxonomy Database provides a standardized bacterial and archaeal taxonomy derived from genome phylogeny." ; dcterms:identifier "gtdb" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:gtdb.downloads, kgr:metatraits.gtdb.family-summary, kgr:metatraits.gtdb.genus-summary, kgr:metatraits.gtdb.species-summary, kgr:metatraits.gtdb2ncbi, kgr:metatraits.ncbi2gtdb, kgr:obo-db-ingest.gtdb.json, kgr:obo-db-ingest.gtdb.obo, kgr:obo-db-ingest.gtdb.owl, kgr:obo-db-ingest.gtdb.sssom.tsv, kgr:obo-db-ingest.gtdb.tsv, kgr:rdf-portal.sparql.primary ; schema1:name "Genome Taxonomy Database" ; skos:inScheme "genomics", "microbiology", "organisms", "taxonomy" ; adms:status "Active" ; foaf:homepage . kgr:gtex a schema1:DataSource ; rdfs:label "GTEx" ; dcterms:created "2025-06-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Genotype-Tissue Expression (GTEx) project provides a comprehensive resource to study tissue-specific gene expression and regulation. Samples were collected from 54 non-diseased tissue sites across nearly 1000 individuals, primarily for molecular assays including WGS, WES, and RNA-Seq." ; dcterms:identifier "gtex" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:automat.gtex, kgr:automat.robokopkg, kgr:bioteque.embeddings, kgr:cfde-gse.genesets, kgr:cfde-gse.graph, kgr:chea-kg.graph, kgr:chea-kg.libraries, kgr:chea.libraries, kgr:darkkinasekb.expression, kgr:date.archive, kgr:digcfdekg.graph, kgr:dorothea.graph, kgr:enrichr-kg.graph, kgr:epigraphdb.graph, kgr:genecards.expression.data, kgr:genecards.web.interface, kgr:genomickb.graph, kgr:gp-kg.graph, kgr:gtex.api, kgr:gtex.bulk-data, kgr:gtex.dbgap-data, kgr:gtex.eqtl-data, kgr:gtex.portal, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:kg-predict.gpkg, kgr:lncrnalyzr.graph, kgr:multiomics-kp.graph, kgr:pavs-kg.api, kgr:pavs-kg.portal, kgr:pavs-kg.sparql, kgr:petagraph.graph, kgr:prokn.gtexexp.anatomy.nodes, kgr:prokn.gtexexp.gene.expressed_in.anatomy.edges, kgr:prokn.gtexexp.gtexexp.expressed_in.anatomy.edges, kgr:prokn.gtexexp.gtexexp.expressed_in.gene.edges, kgr:prokn.gtexexp.gtexexp.has_expression.expbins.edges, kgr:tcrd.api, kgr:tcrd.database_download, kgr:tcrd.documentation, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:identifier "gtex" ; schema1:name "GTEx" ; doap:repository ; skos:inScheme "anatomy and development", "biomedical", "gene expression profiling", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:gtopdb a schema1:DataSource ; rdfs:label "Guide to Pharmacology" ; dcterms:created "2025-05-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The IUPHAR/BPS Guide to PHARMACOLOGY is an expert-curated resource providing quantitative information on drug targets and the substances that act on them, including approved drugs and experimental therapeutics" ; dcterms:identifier "gtopdb" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-06-17T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:automat.gtopdb, kgr:automat.robokopkg, kgr:babel.compendia, kgr:date.archive, kgr:genecards.web.interface, kgr:gpcrdb.api, kgr:gpcrdb.data, kgr:gpcrdb.portal, kgr:gtopdb.api.rest, kgr:gtopdb.approved_drugs.csv, kgr:gtopdb.database, kgr:gtopdb.download.rdf, kgr:gtopdb.download.sdf, kgr:gtopdb.immunopharmacology, kgr:gtopdb.interactions.csv, kgr:gtopdb.ligands.csv, kgr:gtopdb.malaria, kgr:gtopdb.targets.csv, kgr:gtopdb.web, kgr:molepro.api, kgr:molepro.catalog, kgr:molepro.graph.edges, kgr:molepro.graph.nodes, kgr:molepro.trapi, kgr:mychem.api, kgr:pubchem.substances.asn, kgr:pubchem.substances.sdf, kgr:rtx-kg2.graph.edges, kgr:rtx-kg2.graph.nodes, kgr:rtx-kg2.neo4j, kgr:translator.gtopdb.graph, kgr:translator.translator_kg.graph ; schema1:identifier "gtopdb" ; schema1:name "Guide to Pharmacology" ; doap:repository ; skos:inScheme "biomedical", "drug discovery", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:gtr a schema1:DataSource ; rdfs:label "Genetic Testing Registry" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The NIH Genetic Testing Registry (GTR) is NCBI's central database of genetic test information submitted voluntarily by test providers. Each test record covers the test's purpose, methods, analytical and clinical validity, the laboratory offering it, and the conditions and genes it targets. Conditions are identified by MedGen concept IDs with OMIM and SNOMED CT cross-references, and genes by NCBI Gene IDs. NIH does not independently verify submitted information." ; dcterms:identifier "gtr" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:gtr.docs, kgr:gtr.portal, kgr:gtr.test_condition_gene, kgr:gtr.test_version, kgr:gtr.xml ; schema1:name "Genetic Testing Registry" ; skos:altLabel "GTR", "NCBI Genetic Testing Registry", "NIH Genetic Testing Registry" ; skos:inScheme "biomedical", "clinical", "genomics" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ncbi . kgr:gtrnadb a schema1:DataSource ; rdfs:label "GtRNAdb" ; dcterms:created "2009-01-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Genomic tRNA Database (GtRNAdb) is a comprehensive repository of transfer RNA (tRNA) gene predictions identified by tRNAscan-SE in complete and draft genomes across all domains of life. The database contains over 431,000 tRNA gene predictions from 4,867 genomes (609 eukaryotes, 220 archaea, and 4,038 bacteria) as of Data Release 22 (September 2024). GtRNAdb provides detailed annotations including tRNA sequences, predicted secondary structures, isotype-specific scoring, genomic context via UCSC Genome Browser integration, and functional data such as RNA modifications from MODOMICS, tRNA fragment expression profiles, genomic variants from dbSNP, epigenetic information from ENCODE, and evolutionary conservation across species. The database enables comparative analysis through search capabilities by phylogenetic domain, species, amino acid isotypes, anticodons, tRNA scores, structural features, and sequence similarity via BLAST." ; dcterms:identifier "gtrnadb" ; dcterms:isReferencedBy , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , , ; schema1:hasPart kgr:genecards.web.interface, kgr:gtrnadb.archives, kgr:gtrnadb.blast, kgr:gtrnadb.browse, kgr:gtrnadb.docs, kgr:gtrnadb.faq, kgr:gtrnadb.portal, kgr:gtrnadb.sifter, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db ; schema1:name "GtRNAdb" ; skos:inScheme "genomics", "non-coding RNA" ; adms:status "Active" ; foaf:homepage . kgr:gtrx a schema1:Aggregator ; rdfs:label "Genome-to-Treatment" ; dcterms:created "2025-11-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Genome-to-Treatment (GTRx) is a NCATS Translator knowledge provider exposed through a BioThings API. It contains recommended acute treatments and interventions for seriously ill newborns, infants, and children with newly diagnosed genetic diseases, including therapeutics, dietary changes, surgery, medical devices, and other interventions." ; dcterms:identifier "gtrx" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:gtrx.api, kgr:gtrx.data, kgr:service-kp.trapi ; schema1:identifier "gtrx" ; schema1:name "Genome-to-Treatment" ; doap:repository ; skos:altLabel "GTRx", "Genome-to-Treatment", "gTRx" ; skos:inScheme "biomedical", "genomics", "pharmacology", "precision medicine", "rare disease" ; skos:related "translator" ; adms:status "Active" ; foaf:homepage . kgr:gutmdisorder a schema1:DataSource ; rdfs:label "gutMDisorder" ; dcterms:created "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "gutMDisorder is a manually curated database of dysbiosis of the gut microbiota in disorders and under interventions such as medications, diets and probiotics. Each association records the microbe, the condition or intervention, the direction of change, the host and the supporting publication. Version 2.0 (2022) added associations curated from re-annotated raw sequencing data with manually curated host metadata, and interactive charts. Conditions are linked to MeSH and Disease Ontology terms and microbes to NCBI Taxonomy. Maintained at Harbin Medical University." ; dcterms:identifier "gutmdisorder" ; dcterms:isReferencedBy , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:gutmdisorder.literature_associations, kgr:gutmdisorder.rawdata_associations, kgr:gutmdisorder.site, kgr:micromap.api ; schema1:name "gutMDisorder" ; skos:inScheme "biomedical", "microbiology", "microbiome" ; adms:status "Active" ; foaf:homepage . kgr:gutmgene a schema1:DataSource ; rdfs:label "GutMGene" ; dcterms:created "2025-04-13T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A manually curated database of target genes of gut microbes and microbial metabolites in humans and mice." ; dcterms:identifier "gutmgene" ; dcterms:isReferencedBy , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:gutmgene.site, kgr:mgmlink.code ; schema1:name "GutMGene" ; skos:inScheme "microbiology", "microbiome" ; adms:status "Active" ; foaf:homepage . kgr:gwascatalog a schema1:DataSource ; rdfs:label "GWAS Catalog" ; dcterms:created "2025-07-20T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The NHGRI-EBI GWAS Catalog is a curated, searchable, and freely available database of SNP-trait associations from published and submitted genome-wide association studies. Expert curators extract reported traits, significant variant-trait associations, and study metadata, providing an integrated resource updated on a weekly cycle and accessible via web interfaces, bulk downloads, summary statistics, and a REST API." ; dcterms:identifier "gwascatalog" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:alzkb.browser, kgr:alzkb.data, kgr:aop-db.data, kgr:automat.gwascatalog, kgr:automat.robokopkg, kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:cancer-genome-interpreter.clinicalkg.graph, kgr:clinicalkg.graph, kgr:dbnsfp.academic, kgr:dbnsfp.commercial, kgr:disgenet.data, kgr:enrichr-kg.graph, kgr:genecards.variant.data, kgr:genecards.web.interface, kgr:genomickb.graph, kgr:gwascatalog.api, kgr:gwascatalog.associations.owl, kgr:gwascatalog.associations.tsv, kgr:gwascatalog.diagram.current, kgr:gwascatalog.studies.tsv, kgr:gwascatalog.summary_statistics.ftp, kgr:gwascatalog.traits_efo.tsv, kgr:gwascatalog.web, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:indra.cogex.code, kgr:markerdb.api, kgr:markerdb.sequence_variants.tsv, kgr:medkg.site, kgr:molepro.graph.edges, kgr:molepro.graph.nodes, kgr:myvariant.api, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:phewascat.associations, kgr:rdf-portal.sparql.ebi, kgr:spoke-okn.graph, kgr:spoke.graph ; schema1:identifier "gwas-catalog" ; schema1:name "GWAS Catalog" ; skos:inScheme "biomedical", "genome-wide association studies", "genomics" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ebi . kgr:habronattus a schema1:Ontology ; rdfs:label "Habronattus courtship" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Description unavailable." ; dcterms:identifier "habronattus" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:name "Habronattus courtship" ; skos:inScheme "organisms" ; adms:status "Inactive" ; foaf:homepage . kgr:hald a schema1:KnowledgeGraph ; rdfs:label "Human Aging and Longevity Database" ; dcterms:created "2026-04-06T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "HALD (Human Aging and Longevity Database) is a human aging and longevity knowledge graph generated from text-mined PubMed literature and organized around entities, relations, and biomarkers relevant to aging and longevity research." ; dcterms:identifier "hald" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:hald.aging-biomarkers.json, kgr:hald.browser, kgr:hald.entities.csv, kgr:hald.entity-info.json, kgr:hald.literature-info.json, kgr:hald.longevity-biomarkers.json, kgr:hald.relation-info.json, kgr:hald.roles.csv ; schema1:name "Human Aging and Longevity Database" ; doap:repository ; skos:inScheme "aging", "biological systems", "biomedical", "literature", "natural language processing", "precision medicine" ; adms:status "Active" ; foaf:homepage . kgr:hancestro a schema1:Ontology ; rdfs:label "Human Ancestry Ontology" ; dcterms:created "2025-06-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Human Ancestry Ontology (HANCESTRO) provides a systematic description of the ancestry concepts used in the NHGRI-EBI Catalog of published genome-wide association studies." ; dcterms:identifier "hancestro" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:efo.obo, kgr:efo.owl, kgr:hancestro.owl, kgr:pavs-kg.api, kgr:pavs-kg.phenopackets, kgr:pavs-kg.portal, kgr:pavs-kg.sparql ; schema1:name "Human Ancestry Ontology" ; doap:repository ; skos:inScheme "genomics", "human populations", "organisms", "population genetics" ; adms:status "Active" ; foaf:homepage . kgr:hao a schema1:Ontology ; rdfs:label "Hymenoptera Anatomy Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A structured controlled vocabulary of the anatomy of the Hymenoptera (bees, wasps, and ants)" ; dcterms:identifier "hao" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:hao.depictions.owl, kgr:hao.kg-bioportal, kgr:hao.obo, kgr:hao.owl ; schema1:name "Hymenoptera Anatomy Ontology" ; doap:repository ; skos:inScheme "anatomy and development", "insects", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:harmonizome a schema1:Aggregator ; rdfs:label "Harmonizome" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Harmonizome is an aggregator of processed gene and protein datasets from diverse online biomedical resources. Harmonizome 3.0 reports 114,997,358 associations among 58,935 genes and 518,340 attributes from 172 datasets provided by 87 resources." ; dcterms:identifier "harmonizome" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:harmonizome.documentation, kgr:harmonizome.downloads, kgr:harmonizome.kg-api, kgr:harmonizome.kg-neo4j, kgr:harmonizome.kg-portal, kgr:harmonizome.portal ; schema1:name "Harmonizome" ; doap:repository ; skos:inScheme "biomedical", "genomics", "proteomics", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:hetionet a schema1:KnowledgeGraph ; rdfs:label "Hetionet" ; dcterms:created "2025-06-24T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Hetionet is an integrative network of biomedical knowledge assembled from 29 different databases of genes, compounds, diseases, and more. It combines over 50 years of biomedical information into a single resource." ; dcterms:identifier "hetionet" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:alzkb.browser, kgr:alzkb.data, kgr:automat.hetio, kgr:automat.robokopkg, kgr:drkg.graph, kgr:hetionet.data.edges, kgr:hetionet.data.json, kgr:hetionet.data.neo4j, kgr:hetionet.data.nodes, kgr:hetionet.hetnetpy, kgr:hetionet.neo4j, kgr:hetionet.search, kgr:kg4sl.synlethkg, kgr:mechreponet.kg, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv ; schema1:identifier "hetionet" ; schema1:name "Hetionet" ; doap:repository ; skos:inScheme "biomedical", "drug discovery", "drug repositioning", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:hgnc a schema1:DataSource ; rdfs:label "HGNC" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "HGNC is the HUGO Gene Nomenclature Committee. It is a resource for approved human gene names." ; dcterms:identifier "hgnc" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:aopwiki-rdf.ttl, kgr:automat.hgnc, kgr:automat.robokopkg, kgr:babel.compendia, kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:biogrid.identifiers, kgr:cancer-genome-interpreter.clinicalkg.graph, kgr:cellmodelpassports.gene_identifiers, kgr:clinicalkg.graph, kgr:dbnsfp.academic, kgr:dbnsfp.commercial, kgr:gencode.human.gtf, kgr:genecards.gene.annotations, kgr:genecards.web.interface, kgr:genereviews.genes, kgr:genereviews.genes-diseases, kgr:genereviews.genes-uniprot, kgr:genomickb.graph, kgr:hra-kg.graph.json, kgr:hra-kg.graph.nq, kgr:hra-kg.graph.nt, kgr:hra-kg.graph.ttl, kgr:hra-kg.graph.xml, kgr:hra.data, kgr:hrpimp.data, kgr:ibkh.graph, kgr:kg-alzheimers.graph, kgr:kg-ebi-gene2pheno.edges.kgx, kgr:kg-ebi-gene2pheno.edges.trapi, kgr:kg-ebi-gene2pheno.nodes.kgx, kgr:kinace.portal, kgr:medkg.site, kgr:microbiomekg.api, kgr:molepro.api, kgr:molepro.catalog, kgr:molepro.graph.edges, kgr:molepro.graph.nodes, kgr:molepro.trapi, kgr:mondo.sssom, kgr:obo-db-ingest.hgnc.genegroup.json, kgr:obo-db-ingest.hgnc.genegroup.obo, kgr:obo-db-ingest.hgnc.genegroup.owl, kgr:obo-db-ingest.hgnc.genegroup.tsv, kgr:obo-db-ingest.hgnc.json, kgr:obo-db-ingest.hgnc.obo, kgr:obo-db-ingest.hgnc.owl, kgr:obo-db-ingest.hgnc.sssom.tsv, kgr:obo-db-ingest.hgnc.tsv, kgr:omim.mim2gene, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:pheknowlator.graph, kgr:prokn.hgncuniprot.gene.is_protein.protein.edges, kgr:rdf-portal.sparql.primary, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db, kgr:scibite.hgnc, kgr:sldb.data, kgr:sri-reference-kg.graph, kgr:string.cog.links, kgr:string.cog.links.detailed, kgr:string.database, kgr:string.protein.links, kgr:string.protein.links.detailed, kgr:string.protein.links.full, kgr:string.protein.physical.links, kgr:string.protein.physical.links.detailed, kgr:string.protein.physical.links.full, kgr:sugi-atlas.portal, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:identifier "hgnc" ; schema1:name "HGNC" ; doap:repository ; skos:inScheme "genomics" ; skos:notation "FAIRsharing.amcv1e" ; adms:status "Active" ; foaf:homepage . kgr:hifld a schema1:DataSource ; rdfs:label "Homeland Infrastructure Foundation-Level Data (HIFLD)" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Homeland Infrastructure Foundation-Level Data (HIFLD) is a U.S. Department of Homeland Security program that provides national geospatial datasets describing the location and attributes of critical infrastructure across the United States. Datasets cover sectors such as hospitals and public health facilities, emergency medical and fire services, law enforcement, energy and utilities, transportation, and communications. The data are distributed as an ArcGIS Hub open-data catalog with downloads in formats including CSV, GeoJSON, KML, and shapefile, and via GeoServices/WMS/WFS APIs. HIFLD is an upstream source of the KnowWhereGraph." ; dcterms:identifier "hifld" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:hifld.api, kgr:hifld.catalog, kgr:knowwheregraph.graph ; schema1:name "Homeland Infrastructure Foundation-Level Data (HIFLD)" ; skos:inScheme "disasters", "environment", "geographic information systems", "information technology", "public health", "transportation" ; adms:status "Active" ; foaf:homepage . kgr:hippie a schema1:DataSource ; rdfs:label "HIPPIE" ; dcterms:created "2026-05-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "HIPPIE is a human protein-protein interaction reference resource integrating experimentally supported interaction evidence from major public protein interaction databases and assigning confidence scores based on the type, number, and quality of supporting experiments." ; dcterms:identifier "hippie" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:hippie.current.mitab, kgr:hippie.current.tab, kgr:hippie.experimental-scores, kgr:hippie.portal, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv ; schema1:name "HIPPIE" ; skos:altLabel "HIPPIE", "Human Integrated Protein-Protein Interaction rEference" ; skos:inScheme "protein interactions", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:hmdb a schema1:Aggregator ; rdfs:label "Human Metabolome Database" ; dcterms:created "2025-08-12T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Human Metabolome Database (HMDB) is a comprehensive curated knowledgebase of small molecule metabolites found in the human body, integrating chemical, clinical, biochemical, spectral, and physiological data along with associated enzyme, transporter, and disease information to support metabolomics, biomarker discovery, systems biology, and precision medicine research." ; dcterms:identifier "hmdb" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:automat.hmdb, kgr:automat.robokopkg, kgr:babel.compendia, kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:cancer-genome-interpreter.clinicalkg.graph, kgr:clinicalkg.graph, kgr:foodb.data.csv, kgr:foodb.data.json, kgr:foodb.data.mysql, kgr:foodb.data.xml, kgr:foodb.web, kgr:genecards.web.interface, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:hmdb.fasta.enzymes, kgr:hmdb.fasta.genes, kgr:hmdb.portal, kgr:hmdb.spectra.all.peaklists, kgr:hmdb.spectra.all.xml, kgr:hmdb.spectra.gc.experimental.xml, kgr:hmdb.spectra.gc.predicted.txt, kgr:hmdb.spectra.gc.predicted.xml, kgr:hmdb.spectra.mass.images, kgr:hmdb.spectra.msms.experimental.txt, kgr:hmdb.spectra.msms.experimental.xml, kgr:hmdb.spectra.msms.predicted.txt, kgr:hmdb.spectra.msms.predicted.xml, kgr:hmdb.spectra.nmr.fid, kgr:hmdb.spectra.nmr.peaklist, kgr:hmdb.spectra.nmr.xml, kgr:hmdb.structures.sdf, kgr:hmdb.xml.metabolites, kgr:hmdb.xml.metabolites.csf, kgr:hmdb.xml.metabolites.feces, kgr:hmdb.xml.metabolites.saliva, kgr:hmdb.xml.metabolites.serum, kgr:hmdb.xml.metabolites.sweat, kgr:hmdb.xml.metabolites.urine, kgr:hmdb.xml.proteins, kgr:icees-kg.graph, kgr:icees-kg.metadata, kgr:icees-kg.trapi, kgr:markerdb.api, kgr:markerdb.chemicals.tsv, kgr:medkg.site, kgr:micromap.api, kgr:molepro.api, kgr:molepro.catalog, kgr:molepro.graph.edges, kgr:molepro.graph.nodes, kgr:molepro.trapi, kgr:pathwhiz.pathways, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:pubchem.substances.asn, kgr:pubchem.substances.sdf, kgr:rampdb.database, kgr:rtx-kg2.graph.edges, kgr:rtx-kg2.graph.nodes, kgr:rtx-kg2.neo4j, kgr:unibiomap.auxs, kgr:unibiomap.links, kgr:unibiomap.pred, kgr:unibiomap.pred.full ; schema1:identifier "hmdb" ; schema1:name "Human Metabolome Database" ; skos:inScheme "biomedical", "chemistry and biochemistry", "metabolomics" ; adms:status "Active" ; foaf:homepage . kgr:hocomoco a schema1:DataSource ; rdfs:label "HOCOMOCO" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "HOCOMOCO (HOmo sapiens COmprehensive MOdel COllection) is a curated database of transcription factor (TF) binding models, primarily position weight matrices (PWMs), for human and mouse. The models are derived from large-scale ChIP-Seq and HT-SELEX experiments and are manually curated, benchmarked, and annotated with quality ratings and recommended score thresholds. HOCOMOCO covers over a thousand human and mouse TFs, including secondary motif subtypes, and is a widely used upstream source for downstream regulatory resources such as DoRothEA." ; dcterms:identifier "hocomoco" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:dorothea.graph, kgr:hocomoco.core-pwms, kgr:hocomoco.downloads, kgr:hocomoco.full-pwms ; schema1:name "HOCOMOCO" ; skos:inScheme "gene regulation", "genomics", "proteomics", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:hom a schema1:Ontology ; rdfs:label "Homology Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "This ontology represents concepts related to homology, as well as other concepts used to describe similarity and non-homology." ; dcterms:identifier "hom" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:hom.kg-bioportal, kgr:hom.owl ; schema1:name "Homology Ontology" ; doap:repository ; skos:inScheme "anatomy and development" ; adms:status "Active" ; foaf:homepage . kgr:homologene a schema1:DataSource ; rdfs:label "HomoloGene" ; dcterms:created "2025-11-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "HomoloGene was NCBI's database of homologs (genes with common ancestry) from completely sequenced eukaryotic genomes. The database organized genes into homology groups representing putative orthologs and paralogs across multiple species. HomoloGene was retired in January 2024 and replaced by the NCBI Orthologs dataset, which is now accessible through NCBI Datasets and the Gene database. The last HomoloGene build (build 68) was produced in 2014 and is no longer aligned with current data in NCBI RefSeq and Gene. Historical data from build 68 remains available on FTP for archival purposes only." ; dcterms:identifier "homologene" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:genecards.web.interface, kgr:homologene.data, kgr:homologene.ftp_archive, kgr:homologene.xml, kgr:mygene.api, kgr:rdf-portal.sparql.primary ; schema1:identifier "homologene" ; schema1:name "HomoloGene" ; skos:inScheme "genomics", "molecular evolution" ; adms:status "Inactive" ; foaf:homepage ; foaf:maker kgr:ncbi . kgr:hp a schema1:Ontology ; rdfs:label "Human Phenotype Ontology (HPO)" ; dcterms:created "2025-04-22T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Human Phenotype Ontology (HPO) is a structured and controlled vocabulary for the phenotypic features encountered in human hereditary and other disease." ; dcterms:identifier "hp" ; dcterms:isReferencedBy , , , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:babel.compendia, kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:cancer-genome-interpreter.clinicalkg.graph, kgr:clinicalkg.graph, kgr:dbnsfp.academic, kgr:dbnsfp.commercial, kgr:disgenet.data, kgr:drug-approvals-kp.graph.edges, kgr:drug-approvals-kp.graph.nodes, kgr:drugmechdb.graph, kgr:efo.obo, kgr:efo.owl, kgr:enrichr-kg.graph, kgr:eram.downloads, kgr:eram.web, kgr:genecards.web.interface, kgr:gp-kg.graph, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:hp.genes_to_phenotype.txt, kgr:hp.hp-base.json, kgr:hp.hp-base.obo, kgr:hp.hp-base.owl, kgr:hp.hp-full.json, kgr:hp.hp-full.obo, kgr:hp.hp-full.owl, kgr:hp.hp-international.json, kgr:hp.hp-international.obo, kgr:hp.hp-international.owl, kgr:hp.hp-simple-non-classified.json, kgr:hp.hp-simple-non-classified.obo, kgr:hp.hp-simple-non-classified.owl, kgr:hp.json, kgr:hp.kg-bioportal, kgr:hp.obo, kgr:hp.owl, kgr:hp.phenotype.hpoa, kgr:hp.phenotype_to_genes.txt, kgr:icees-kg.graph, kgr:icees-kg.metadata, kgr:icees-kg.trapi, kgr:indra.cogex.code, kgr:kg-alzheimers.graph, kgr:kg-covid-19.graph, kgr:kg-idg.graph, kgr:kg-microbe.graph.biomedical, kgr:kg-microbe.graph.biomedical-function, kgr:kg-microbe.graph.core, kgr:kg-microbe.graph.function, kgr:kg-microbe.graph.raw, kgr:kg-monarch.graph, kgr:kg-monarch.graph.duckdb, kgr:kg-monarch.graph.jsonl, kgr:kg-monarch.graph.jsonl.edges, kgr:kg-monarch.graph.jsonl.nodes, kgr:kg-monarch.graph.neo4j, kgr:kg-monarch.graph.neo4j.edges, kgr:kg-monarch.graph.neo4j.nodes, kgr:kg-monarch.graph.rdf, kgr:kg-predict.gpkg, kgr:mechreponet.kg, kgr:medgen.csv, kgr:medgen.hpo-history, kgr:medgen.hpo-mapping, kgr:medgen.hpo-omim-mapping, kgr:medgen.id-mappings, kgr:medgen.mgconso, kgr:medgen.mgdef, kgr:medgen.mgrel, kgr:medgen.mgsat, kgr:medgen.names, kgr:mondo.sssom, kgr:msigdb.downloads.human, kgr:msigdb.downloads.mouse, kgr:mydisease.api, kgr:ncatsgardkg.graph, kgr:np-kg.graph.networkx, kgr:np-kg.graph.tsv, kgr:oard-kg.sparql, kgr:oard-kg.tpf, kgr:openpredict.api, kgr:openpredict.predictions, kgr:oregano.graph, kgr:orphanet.scientific_knowledge_files, kgr:pavs-kg.api, kgr:pavs-kg.phenopackets, kgr:pavs-kg.portal, kgr:pavs-kg.sparql, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:pheknowlator.graph, kgr:primekg.graph, kgr:prokn.hgnchpo.gene.associated_with.diseaseorphenotype.edges, kgr:rna-kg.kg.edges, kgr:rna-kg.kg.neo4j, kgr:rna-kg.kg.nodes, kgr:rtx-kg2.graph.edges, kgr:rtx-kg2.graph.nodes, kgr:rtx-kg2.neo4j, kgr:service-kp.trapi, kgr:sri-reference-kg.graph, kgr:translator.hpoa.graph, kgr:translator.translator_kg.graph, kgr:ubkg.csv, kgr:ubkg.neo4j, kgr:unibiomap.auxs, kgr:unibiomap.links, kgr:unibiomap.phenotype_desc, kgr:unibiomap.pred, kgr:unibiomap.pred.full ; schema1:identifier "hpo" ; schema1:name "Human Phenotype Ontology (HPO)" ; doap:repository ; skos:inScheme "biomedical", "phenotype" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:monarchinitiative . kgr:hpa a schema1:Aggregator ; rdfs:label "Human Protein Atlas" ; dcterms:created "2025-10-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Human Protein Atlas (HPA) is a Swedish-based program aiming to map all human proteins in cells, tissues and organs using an integration of various omics technologies, including antibody-based imaging, mass spectrometry-based proteomics, transcriptomics and systems biology. The HPA aggregates and presents data from nine different resources covering tissue, brain, single cell, subcellular, cancer, blood, cell line, structure, and interaction atlases." ; dcterms:identifier "hpa" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:bioteque.embeddings, kgr:cancer-genome-interpreter.clinicalkg.graph, kgr:clinicalkg.graph, kgr:dbnsfp.academic, kgr:dbnsfp.commercial, kgr:genecards.web.interface, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:hpa.api.json, kgr:hpa.api.rdf, kgr:hpa.api.tsv, kgr:hpa.api.xml, kgr:hpa.blood_protein, kgr:hpa.brain_rna, kgr:hpa.normal_tissue, kgr:hpa.pathology, kgr:hpa.portal, kgr:hpa.proteinatlas.json, kgr:hpa.proteinatlas.tsv, kgr:hpa.proteinatlas.xml, kgr:hpa.rna_celline, kgr:hpa.rna_immune_cell, kgr:hpa.rna_single_cell, kgr:hpa.rna_tissue, kgr:hpa.subcellular_location, kgr:kg-idg.graph, kgr:pheknowlator.graph, kgr:spoke-okn.graph, kgr:spoke.graph, kgr:unibiomap.auxs, kgr:unibiomap.links, kgr:unibiomap.pred, kgr:unibiomap.pred.full ; schema1:identifier "hpa" ; schema1:name "Human Protein Atlas" ; doap:repository ; skos:inScheme "anatomy and development", "biomedical", "gene expression profiling", "genomics", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:hpap a schema1:DataSource ; rdfs:label "Human Pancreas Analysis Program (HPAP)" ; dcterms:created "2026-07-01T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Human Pancreas Analysis Program (HPAP) is a program of the NIH/NIDDK Human Islet Research Network (HIRN) that generates deeply phenotyped, multi-omic datasets from human pancreata and isolated islets of organ donors across the spectrum of type 1 and type 2 diabetes. HPAP data, including single-cell RNA-seq and single-nucleus ATAC-seq of pancreatic islets, are distributed through the PANC-DB data portal." ; dcterms:identifier "hpap" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:hpap.pancdb, kgr:pankgraph.graph ; schema1:name "Human Pancreas Analysis Program (HPAP)" ; skos:inScheme "biomedical", "clinical", "diabetes mellitus", "genomics", "immunology" ; adms:status "Active" ; foaf:homepage . kgr:hpidb a schema1:DataSource ; rdfs:label "Host-Pathogen Interaction Database" ; dcterms:created "2026-05-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Host-Pathogen Interaction Database (HPIDB) was a public resource for host-pathogen protein-protein interactions. HPIDB integrated experimentally verified interactions from public molecular interaction databases and targeted curation into a non-redundant resource for searching, downloading, visualizing, and inferring host-pathogen interaction networks, but its primary homepage was not accessible during curation checks on 2026-05-04 and 2026-06-02." ; dcterms:identifier "hpidb" ; dcterms:isReferencedBy , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:hpidb.mitab, kgr:hpidb.portal, kgr:intact.api, kgr:intact.datasets, kgr:intact.ftp.psi25, kgr:intact.ftp.psi30, kgr:intact.ftp.psimitab, kgr:intact.ftp.psimitab.all ; schema1:identifier "hpidb" ; schema1:name "Host-Pathogen Interaction Database" ; skos:altLabel "HPIDB", "Host Pathogen Interaction Database" ; skos:inScheme "biomedical", "host-pathogen interactions", "immunology", "microbiology", "protein interactions", "proteomics" ; skos:notation "FAIRsharing.fk0z49" ; adms:status "unresponsive" ; foaf:homepage ; foaf:maker kgr:mississippi-state-university-college-of-veterinary-medicine . kgr:hprd a schema1:Aggregator ; rdfs:label "HPRD" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Human Protein Reference Database (HPRD) was a comprehensive, manually curated collection of information on human proteins, including protein-protein interactions, post-translational modifications (PTMs), enzyme-substrate relationships, subcellular localization, tissue expression, and disease associations. Developed through collaboration between the Institute of Bioinformatics in Bangalore, India and Johns Hopkins University in Baltimore, USA, HPRD contained over 20,000 protein entries with more than 36,500 unique protein-protein interactions and 18,000 PTMs before being discontinued. The database served as a major resource for the human proteome from 2003 to approximately 2010." ; dcterms:identifier "hprd" ; dcterms:isReferencedBy , , , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:genecards.web.interface, kgr:genemania.networks, kgr:hippie.current.mitab, kgr:hippie.current.tab, kgr:hprd.genprot.viewer, kgr:hprd.phosphomotif.finder, kgr:hprd.ppi.data, kgr:hprd.tsv.download, kgr:hprd.xml.download, kgr:iid.human_annotated_ppis, kgr:iid.mouse_annotated_ppis, kgr:iptmnet.ptm, kgr:irefindex.database, kgr:pathwaycommons.biopax, kgr:pathwaycommons.downloads, kgr:pathwaycommons.gmt, kgr:pathwaycommons.sif, kgr:pathwaycommons.txt, kgr:string.cog.links, kgr:string.cog.links.detailed, kgr:string.database, kgr:string.protein.links, kgr:string.protein.links.detailed, kgr:string.protein.links.full, kgr:string.protein.physical.links, kgr:string.protein.physical.links.detailed, kgr:string.protein.physical.links.full ; schema1:name "HPRD" ; skos:inScheme "biomedical", "post-translational modification", "protein interactions", "proteomics", "systems biology" ; adms:status "Inactive" ; foaf:homepage . kgr:hra a schema1:DataModel ; rdfs:label "Human Reference Atlas" ; dcterms:created "2025-11-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Human Reference Atlas (HRA) is a comprehensive 3D spatial framework and data model for mapping the healthy human body at single-cell resolution. The HRA provides reference anatomical structures, cell types, biomarkers, and standardized spatial coordinates to enable integration and analysis of diverse biological data types across multiple scales from organs to cells." ; dcterms:identifier "hra" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:hra.api, kgr:hra.api-spec, kgr:hra.data, kgr:hra.knowledge-graph, kgr:hra.portal, kgr:hubmap.human_reference_atlas, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:identifier "hra" ; schema1:name "Human Reference Atlas" ; doap:repository ; skos:altLabel "HRA" ; skos:inScheme "anatomy and development", "biological systems", "biomedical", "precision medicine", "single-cell analysis" ; adms:status "Active" ; foaf:homepage . kgr:hra-kg a schema1:KnowledgeGraph ; rdfs:label "Human Reference Atlas Knowledge Graph (HRA KG)" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The HRA Knowledge Graph (HRA KG) is a linked open data resource that integrates anatomical structures, cell types, and biomarkers to support cross-scale biological queries." ; dcterms:identifier "hra-kg" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:hra-kg.graph.json, kgr:hra-kg.graph.nq, kgr:hra-kg.graph.nt, kgr:hra-kg.graph.ttl, kgr:hra-kg.graph.xml ; schema1:name "Human Reference Atlas Knowledge Graph (HRA KG)" ; doap:repository ; skos:inScheme "anatomy and development", "biological systems", "biomedical", "single-cell analysis" ; adms:status "Active" ; foaf:homepage . kgr:hravs a schema1:DataModel ; rdfs:label "Human Reference Atlas Value Set (HRAVS)" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "HRAVS (Human Reference Atlas Value Set) is a controlled vocabulary that standardizes the names and definitions of research attributes used across the Human Reference Atlas (HRA) and the broader HuBMAP project. It is distributed as a SKOS-based value set within the HRA Knowledge Graph, providing a consistent, widely accepted set of terms for describing HRA metadata. HRAVS is bundled as an upstream component of the HRA Knowledge Graph (HRA-KG)." ; dcterms:identifier "hravs" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:hra-kg.graph.json, kgr:hra-kg.graph.nq, kgr:hra-kg.graph.nt, kgr:hra-kg.graph.ttl, kgr:hra-kg.graph.xml, kgr:hravs.graph.json, kgr:hravs.graph.ttl, kgr:hravs.kg-bioportal ; schema1:name "Human Reference Atlas Value Set (HRAVS)" ; doap:repository ; skos:inScheme "anatomy and development", "biomedical", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:hrpimp a schema1:DataSource ; rdfs:label "Human Reference Protein Interactome Mapping Project" ; dcterms:created "2025-11-19T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Human Reference Protein Interactome Mapping Project (HRPIMP) is a systematic effort to map binary protein-protein interactions in human cells. The project produced the Human Reference Interactome (HuRI) database containing high-quality experimentally validated protein-protein interactions. Using systematic yeast two-hybrid (Y2H) screening approaches, HRPIMP produced proteome-scale human PPI datasets including HuRI, HI-union, and earlier CCSB interactome screens. The current HuRI portal provides the HuRI dataset with 52,569 interactions in TSV and PSI-MI formats, mapped to Ensembl identifiers for GENCODE protein-coding genes." ; dcterms:identifier "hrpimp" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:alzkb.browser, kgr:alzkb.data, kgr:hrpimp.data, kgr:hrpimp.huri.psi, kgr:hrpimp.web ; schema1:name "Human Reference Protein Interactome Mapping Project" ; doap:repository ; skos:altLabel "HRPIMP", "HuRI", "Human Reference Interactome" ; skos:inScheme "biomedical", "protein interactions", "proteomics", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:hsapdv a schema1:Ontology ; rdfs:label "Human Developmental Stages" ; dcterms:created "2025-06-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Life cycle stages for Human" ; dcterms:identifier "hsapdv" ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:hsapdv.kg-bioportal, kgr:hsapdv.obo, kgr:hsapdv.owl, kgr:nlm-ckn.graph, kgr:sri-reference-kg.graph, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:identifier "hsapdv" ; schema1:name "Human Developmental Stages" ; doap:repository ; skos:inScheme "anatomy and development" ; adms:status "Active" ; foaf:homepage . kgr:hso a schema1:Ontology ; rdfs:label "Health Surveillance Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The health Surveillance Ontology (HSO) focuses on \"surveillance system level data\", that is, data outputs from surveillance activities, such as number of samples collected, cases observed, etc. It aims to support One-Health surveillance, covering animal health, public health and food safety surveillance." ; dcterms:identifier "hso" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:hso.kg-bioportal, kgr:hso.owl ; schema1:name "Health Surveillance Ontology" ; doap:repository ; skos:inScheme "biomedical", "epidemiology", "public health" ; adms:status "Active" ; foaf:homepage . kgr:htn a schema1:Ontology ; rdfs:label "Hypertension Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology for representing clinical data about hypertension, intended to support classification of patients according to various diagnostic guidelines" ; dcterms:identifier "htn" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:htn.kg-bioportal, kgr:htn.owl ; schema1:name "Hypertension Ontology" ; doap:repository ; skos:inScheme "biomedical", "cardiovascular disease" ; adms:status "Active" ; foaf:homepage . kgr:hubmap a schema1:Aggregator ; rdfs:label "HuBMAP" ; dcterms:created "2025-08-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Human BioMolecular Atlas Program (HuBMAP) is a transformative NIH Common Fund initiative dedicated to creating an open, global atlas of the human body at the cellular level. HuBMAP develops the tools, technology, and infrastructure needed to map healthy human tissues in unprecedented molecular detail." ; dcterms:identifier "hubmap" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:cfde-gse.genesets, kgr:cfde-gse.graph, kgr:digcfdekg.graph, kgr:enrichr-kg.graph, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:hra.data, kgr:hra.knowledge-graph, kgr:hubmap.antibody_validation_reports, kgr:hubmap.api, kgr:hubmap.azimuth, kgr:hubmap.data_ingest_portal, kgr:hubmap.data_portal, kgr:hubmap.fusion, kgr:hubmap.human_reference_atlas, kgr:hubmap.vitessce, kgr:hubmap.workspaces, kgr:nde.graph, kgr:prokn.hmaz.anatomy.has_marker_gene_in_heart.gene.edges, kgr:prokn.hmaz.anatomy.has_marker_gene_in_kidney.gene.edges, kgr:prokn.hmaz.anatomy.has_marker_gene_in_liver.gene.edges, kgr:prokn.hmaz.anatomy.nodes, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:name "HuBMAP" ; doap:repository ; skos:inScheme "anatomy and development", "biological systems", "biomedical", "genomics", "proteomics", "single-cell analysis", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:human-proteome-map a schema1:DataSource ; rdfs:label "Human Proteome Map" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Human Proteome Map (HPM) is a mass spectrometry-based draft map of the human proteome from Johns Hopkins University and the Institute of Bioinformatics, Bangalore. It reports protein expression from over 290,000 non-redundant peptide identifications covering products of more than 17,000 human genes across 30 histologically normal tissues and cell types (17 adult tissues, 7 fetal tissues and 6 primary hematopoietic cells). The raw data are deposited in PRIDE as PXD000561. The portal has not been updated since its 2014 release and some of its pages are broken." ; dcterms:identifier "human-proteome-map" ; dcterms:isReferencedBy ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:darkkinasekb.expression, kgr:date.archive, kgr:human-proteome-map.download, kgr:human-proteome-map.portal, kgr:human-proteome-map.raw-data ; schema1:name "Human Proteome Map" ; skos:altLabel "Draft map of the human proteome", "HPM" ; skos:inScheme "anatomy and development", "biomedical", "proteomics" ; adms:status "Orphaned" ; foaf:homepage . kgr:humancyc a schema1:DataSource ; rdfs:label "HumanCyc" ; dcterms:created "2026-06-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "HumanCyc is an encyclopedic reference on human metabolic pathways, the human genome, and human metabolites. It is a Pathway/Genome Database (PGDB) within the BioCyc collection maintained by SRI International, computationally predicting the metabolic network of Homo sapiens and integrating genes, enzymes, reactions, compounds, and pathways with tools for omics analysis." ; dcterms:identifier "humancyc" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:genecards.web.interface, kgr:humancyc.downloads, kgr:humancyc.portal, kgr:pathwaycommons.biopax, kgr:pathwaycommons.downloads, kgr:pathwaycommons.gmt, kgr:pathwaycommons.sif, kgr:pathwaycommons.txt ; schema1:name "HumanCyc" ; skos:altLabel "HumanCyc" ; skos:inScheme "chemistry and biochemistry", "genomics", "metabolism", "pathways", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:humannet a schema1:DataSource ; rdfs:label "HumanNet" ; dcterms:created "2025-11-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "HumanNet is a probabilistic functional gene network for Homo sapiens that integrates genomic and proteomic data from multiple sources to predict functional relationships between genes. The network uses a modified Bayesian integration approach to combine evidence from diverse data types including protein-protein interactions, gene co-expression, phylogenetic profiling, and literature mining. HumanNet provides confidence scores for gene-gene functional linkages and can be used for gene function prediction, disease gene prioritization, and pathway analysis." ; dcterms:identifier "humannet" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:humannet.network, kgr:humannet.network.symbol, kgr:humannet.web, kgr:pharmkg.graph ; schema1:name "HumanNet" ; skos:altLabel "HumanNet", "humannet" ; skos:inScheme "genomics", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:huri a schema1:DataSource ; rdfs:label "HuRI" ; dcterms:created "2025-08-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Human Reference Interactome (HuRI) is a comprehensive map of binary protein-protein interactions in human cells, generated through systematic high-throughput yeast two-hybrid screening. HuRI provides the largest experimentally verified collection of human protein interactions and serves as a foundational resource for understanding cellular networks and disease mechanisms." ; dcterms:identifier "huri" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:bioteque.embeddings, kgr:hrpimp.data, kgr:hrpimp.huri.psi, kgr:hrpimp.web, kgr:huri.interactions, kgr:huri.interactions.psi, kgr:huri.literature_benchmark, kgr:huri.portal, kgr:multiomics-kp.graph ; schema1:identifier "huri" ; schema1:name "HuRI" ; doap:repository ; skos:inScheme "protein interactions", "proteomics", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:hydrologykg a schema1:KnowledgeGraph ; rdfs:label "SAWGraph Hydrology KG" ; dcterms:created "2025-12-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Hydrology KG is the part of the SAWGraph project that describes streams, waterbodies and wells and their locations." ; dcterms:identifier "hydrologykg" ; dcterms:license "U.S. federal government public domain" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:hydrologykg.graph, kgr:hydrologykg.sparql, kgr:hydrologykg.tpf ; schema1:name "SAWGraph Hydrology KG" ; skos:inScheme "environment", "water resources" ; adms:status "Active" ; foaf:homepage . kgr:i-adopt a schema1:Ontology ; rdfs:label "I-ADOPT Framework Ontology" ; dcterms:created "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The I-ADOPT Framework ontology, developed by the Research Data Alliance I-ADOPT Working Group, decomposes descriptions of observable properties (variables) into atomic components such as the property, the object of interest, the matrix, the context object and constraints. These components can be mapped to terms in existing FAIR vocabularies, which helps align environmental and other scientific variable terminologies and supports machine-readable variable descriptions. The ontology is released under CC BY 4.0." ; dcterms:identifier "i-adopt" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:i-adopt.docs, kgr:i-adopt.extended.ttl, kgr:i-adopt.jsonld, kgr:i-adopt.kg-bioportal, kgr:i-adopt.owl, kgr:i-adopt.recommendations, kgr:i-adopt.repo, kgr:i-adopt.ttl ; schema1:name "I-ADOPT Framework Ontology" ; doap:repository ; skos:altLabel "I-ADOPT", "iop" ; skos:inScheme "environment", "information technology", "metadata" ; adms:status "Active" ; foaf:homepage . kgr:iana-mediatype a schema1:DataSource ; rdfs:label "IANA Media Types" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The IANA Media Types registry is the official list of media types (MIME types), such as `text/turtle` and `application/json`, maintained by the Internet Assigned Numbers Authority under the procedures of RFC 6838. Each entry links to its registration template and defining specification. It held about 2,360 registered types across ten top-level types when checked on 2026-10-04 (last updated 2026-09-24)." ; dcterms:identifier "iana-mediatype" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:iana-mediatype.application.csv, kgr:iana-mediatype.audio.csv, kgr:iana-mediatype.font.csv, kgr:iana-mediatype.haptics.csv, kgr:iana-mediatype.image.csv, kgr:iana-mediatype.message.csv, kgr:iana-mediatype.model.csv, kgr:iana-mediatype.multipart.csv, kgr:iana-mediatype.portal, kgr:iana-mediatype.text.csv, kgr:iana-mediatype.txt, kgr:iana-mediatype.video.csv, kgr:iana-mediatype.xml, kgr:obo-db-ingest.iana.mediatype.json, kgr:obo-db-ingest.iana.mediatype.obo, kgr:obo-db-ingest.iana.mediatype.owl, kgr:obo-db-ingest.iana.mediatype.sssom.tsv, kgr:obo-db-ingest.iana.mediatype.tsv ; schema1:name "IANA Media Types" ; skos:altLabel "IANA media type registry", "MIME types", "iana.mediatype" ; skos:inScheme "information technology", "metadata" ; adms:status "Active" ; foaf:homepage . kgr:iao a schema1:Ontology ; rdfs:label "Information Artifact Ontology" ; dcterms:created "2025-06-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology of information entities." ; dcterms:identifier "iao" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:chr.model.owl, kgr:ecso.owl, kgr:efo.obo, kgr:efo.owl, kgr:iao.d-acts.owl, kgr:iao.kg-bioportal, kgr:iao.ontology-metadata.owl, kgr:iao.owl, kgr:orkg.dump ; schema1:name "Information Artifact Ontology" ; doap:repository ; skos:inScheme "biomedical", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:ibkh a schema1:KnowledgeGraph ; rdfs:label "integrative Biomedical Knowledge Hub" ; dcterms:created "2025-11-19T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A comprehensive biomedical knowledge graph created by harmonizing and integrating information from diverse biomedical resources for biomedical discovery and drug repurposing." ; dcterms:identifier "ibkh" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ibkh.graph ; schema1:name "integrative Biomedical Knowledge Hub" ; skos:altLabel "iBKH" ; skos:inScheme "biomedical", "drug discovery", "drug repositioning", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:icd10 a schema1:DataSource ; rdfs:label "ICD-10" ; dcterms:created "2025-11-10T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The International Classification of Diseases, 10th Revision (ICD-10) is a standardized system for classifying diseases, injuries, and causes of death maintained by the World Health Organization (WHO). Originating in the 19th century with over 150 years of continuous development, ICD-10 came into effect on January 1, 1993, following adoption by the World Health Assembly in May 1990. ICD-10 provides a comprehensive hierarchical classification system with alphanumeric codes that allow systematic recording, analysis, interpretation, and comparison of mortality and morbidity data collected across countries and time periods. The system is used globally for health recording and statistics, including cause of death certification, morbidity coding in primary through tertiary care, resource allocation, reimbursement systems, quality and safety assessment, and epidemiological research. ICD-10 serves as the foundation for diagnostic-related grouping (DRG), cancer registries, and clinical trials that require standardized disease classification. The classification has been translated into dozens of languages and adapted by many countries for national use, with variants like ICD-10-CM (Clinical Modification) used in the United States and ICD-10-CA used in Canada. While ICD-11 officially came into effect in January 2022, ICD-10 remains widely used during the transition period as countries implement the newer revision. ICD-10 continues to be maintained with periodic updates and serves as the basis for various mapping projects to other terminology systems including SNOMED CT, MedDRA, and LOINC." ; dcterms:identifier "icd10" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:athena.mappings, kgr:athena.vocabularies, kgr:bbmri-eric-directory.csv, kgr:bbmri-eric-directory.ttl, kgr:genecards.web.interface, kgr:icd10.browser, kgr:icd10.downloads, kgr:icd10.training, kgr:imo-knowledge-graph.data, kgr:obo-db-ingest.icd10.json, kgr:obo-db-ingest.icd10.obo, kgr:obo-db-ingest.icd10.owl, kgr:obo-db-ingest.icd10.tsv, kgr:raras.encyclopedia, kgr:raras.portal, kgr:snomedct.icd10cm.map, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:identifier "icd10" ; schema1:name "ICD-10" ; doap:repository ; skos:altLabel "ICD-10", "ICD10", "International Classification of Diseases 10th Revision" ; skos:inScheme "clinical", "clinical coding" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:who . kgr:icd10cm a schema1:Ontology ; rdfs:label "ICD-10-CM" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ICD-10-CM (International Classification of Diseases, 10th Revision, Clinical Modification) is a clinical modification of the WHO's ICD-10 system, providing diagnostic codes used for billing, epidemiology, and health management in the United States, with greater specificity than the international version." ; dcterms:identifier "icd10cm" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:athena.mappings, kgr:athena.vocabularies, kgr:icd10cm.tool, kgr:imo-knowledge-graph.data, kgr:sri-reference-kg.graph ; schema1:identifier "icd10cm" ; schema1:name "ICD-10-CM" ; skos:altLabel "ICD-10-CM", "ICD10 Clinical Modification", "International Classification of Diseases, 10th Revision, Clinical Modification" ; skos:inScheme "biomedical", "clinical", "clinical coding" ; adms:status "Active" ; foaf:homepage . kgr:icd11 a schema1:DataSource ; rdfs:label "ICD-11" ; dcterms:created "2026-02-26T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ICD-11 is the eleventh revision of the International Classification of Diseases and serves as the World Health Organization's global standard for diagnostic health information." ; dcterms:identifier "icd11" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:genecards.web.interface, kgr:icd11.api, kgr:icd11.browser, kgr:obo-db-ingest.icd11.json, kgr:obo-db-ingest.icd11.obo, kgr:obo-db-ingest.icd11.owl, kgr:obo-db-ingest.icd11.sssom.tsv, kgr:obo-db-ingest.icd11.tsv, kgr:raras.encyclopedia, kgr:raras.portal, kgr:sri-reference-kg.graph ; schema1:name "ICD-11" ; skos:inScheme "biomedical", "clinical", "clinical coding" ; adms:status "Active" ; foaf:homepage . kgr:ice a schema1:DataSource ; rdfs:label "ICE (Integrated Chemical Environment)" ; dcterms:created "2026-07-01T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Integrated Chemical Environment (ICE) is a resource developed by the NTP Interagency Center for the Evaluation of Alternative Toxicological Methods (NICEATM), part of the National Toxicology Program (NTP) at the National Institute of Environmental Health Sciences (NIEHS). ICE provides curated chemical data, in vitro assay data, and computational tools and workflows that support chemical safety assessment and toxicological evaluation, including predictions of in vivo toxicity from in vitro and in silico data. It is intended to help scientists develop and evaluate new approach methodologies (NAMs) for chemical hazard characterization." ; dcterms:identifier "ice" ; dcterms:isReferencedBy , ; dcterms:license "U.S. Government Work (public domain)" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biobricks-ice.graph, kgr:ice.data ; schema1:name "ICE (Integrated Chemical Environment)" ; skos:inScheme "biomedical", "chemistry and biochemistry", "environment", "environmental exposure", "toxicology" ; adms:status "Active" ; foaf:homepage . kgr:icees-kg a schema1:KnowledgeGraph ; rdfs:label "Exposures KP (icees-kg)" ; dcterms:created "2025-11-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Integrated Clinical and Environmental Exposures Service Knowledge Graph (ICEES KG) is a Translator Knowledge Provider that integrates patient-level clinical data from electronic health records with environmental exposures data including airborne pollutants, landfills, concentrated animal feeding operations, and socio-economic indicators. ICEES KG provides regulatory-compliant open access to integrated clinical and environmental data to support translational research on exposure-driven disease mechanisms and health disparities." ; dcterms:identifier "icees-kg" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:ars.api, kgr:ars.portal, kgr:cqs.code, kgr:icees-kg.graph, kgr:icees-kg.metadata, kgr:icees-kg.trapi, kgr:translator.icees.graph, kgr:translator.translator_kg.graph ; schema1:identifier "icees-kg" ; schema1:name "Exposures KP (icees-kg)" ; doap:repository ; skos:inScheme "biomedical", "clinical", "electronic health records", "environment", "environmental exposure", "public health" ; skos:related "translator" ; adms:status "Active" ; foaf:homepage . kgr:iceo a schema1:Ontology ; rdfs:label "Integrative and Conjugative Element Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ICEO is an integrated biological ontology for the description of bacterial integrative and conjugative elements (ICEs)." ; dcterms:identifier "iceo" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:iceo.owl ; schema1:name "Integrative and Conjugative Element Ontology" ; doap:repository ; skos:inScheme "biological systems", "genomics", "microbiology" ; adms:status "Active" ; foaf:homepage . kgr:icgc a schema1:DataSource ; rdfs:label "ICGC" ; dcterms:created "2026-06-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The International Cancer Genome Consortium (ICGC) is a global initiative to characterize the genomic, transcriptomic, and epigenomic changes in 50 different tumor types and subtypes. It generates comprehensive catalogues of somatic mutations and other cancer genomics data, made available to the research community. The original ICGC Data Portal (dcc.icgc.org) was retired in June 2024, with ICGC 25K data and the successor ICGC ARGO project continuing to provide access to cancer genomics datasets." ; dcterms:identifier "icgc" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biomuta.dataset, kgr:icgc.downloads, kgr:icgc.platform, kgr:rdf-portal.sparql.primary ; schema1:name "ICGC" ; skos:altLabel "ICGC ARGO", "International Cancer Genome Consortium" ; skos:inScheme "biomedical", "cancer", "clinical", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:ickg a schema1:KnowledgeGraph ; rdfs:label "Immune Cell Knowledge Graph" ; dcterms:created "2026-06-12T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Immune Cell Knowledge Graph (ICKG) is a set of immune cell type-specific knowledge graphs built from cancer immunotherapy-focused PubMed abstracts using large language models and human-verifiable validation. The graphs capture directed, literature-supported relationships among genes, pathways, immune functions, and related biomedical entities to support immune program interpretation and gene set annotation." ; dcterms:identifier "ickg" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:ickg.code, kgr:ickg.graph-data, kgr:ickg.portal ; schema1:name "Immune Cell Knowledge Graph" ; doap:repository ; skos:inScheme "biomedical", "cancer", "immunology", "information technology", "literature", "machine learning", "natural language processing" ; adms:status "Active" ; foaf:homepage . kgr:ico a schema1:Ontology ; rdfs:label "Informed Consent Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology of clinical informed consents" ; dcterms:identifier "ico" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ico.kg-bioportal, kgr:ico.owl ; schema1:name "Informed Consent Ontology" ; doap:repository ; skos:inScheme "biomedical", "clinical", "general" ; adms:status "Active" ; foaf:homepage . kgr:iconclass a schema1:DataSource ; rdfs:label "ICONCLASS" ; dcterms:created "2026-02-26T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ICONCLASS is a comprehensive classification system for the subjects and content of images, used widely by museums, libraries, and other cultural heritage collections." ; dcterms:identifier "iconclass" ; dcterms:modified "2026-05-30T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:iconclass.portal, kgr:obo-db-ingest.iconclass.json, kgr:obo-db-ingest.iconclass.obo, kgr:obo-db-ingest.iconclass.owl, kgr:obo-db-ingest.iconclass.tsv ; schema1:name "ICONCLASS" ; skos:inScheme "humanities and cultural heritage" ; adms:status "Active" ; foaf:homepage . kgr:identifier-mappings a schema1:KnowledgeGraph ; rdfs:label "ID Mappings" ; dcterms:created "2025-12-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Mappings using standard RDF predicates between Wikidata entities and external identifiers represented as RDF IRIs" ; dcterms:identifier "identifier-mappings" ; dcterms:license ; dcterms:modified "2026-07-01T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:identifier-mappings.graph, kgr:identifier-mappings.sparql, kgr:identifier-mappings.tpf ; schema1:name "ID Mappings" ; skos:inScheme "general" ; adms:status "Active" ; foaf:homepage . kgr:identifiers-org a schema1:Aggregator ; rdfs:label "Identifiers.org" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Identifiers.org, run by EMBL-EBI as an ELIXIR Interoperability Platform resource, is a registry of namespace prefixes for life science identifiers together with a resolver that turns compact identifiers (CURIEs such as taxonomy:9606) into URLs at the providing resources. It grew out of the MIRIAM Registry. When checked on 2026-10-04 the registry held 865 namespaces with 1,037 provider resources, available through a web interface, REST APIs, a full JSON dataset export and a SPARQL endpoint that models the registry with VoID and DCAT." ; dcterms:identifier "identifiers-org" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:bioregistry.registry.json, kgr:bioregistry.sssom, kgr:identifiers-org.code, kgr:identifiers-org.dataset, kgr:identifiers-org.docs, kgr:identifiers-org.ontology, kgr:identifiers-org.registry, kgr:identifiers-org.registry-api, kgr:identifiers-org.resolver, kgr:identifiers-org.resolver-api, kgr:identifiers-org.sparql ; schema1:name "Identifiers.org" ; doap:repository ; skos:altLabel "Identifiers.org (MIRIAM Registry)", "MIRIAM Registry", "identifiers.org" ; skos:inScheme "information technology", "metadata" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ebi . kgr:idisk a schema1:KnowledgeGraph ; rdfs:label "integrated Dietary Supplement Knowledge Base" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The integrated DIetary Supplements Knowledge base (iDISK) is a standardized knowledge base integrating dietary supplement information from multiple authoritative sources including ingredients, products, drug interactions, effectiveness, adverse effects, and therapeutic uses, represented according to established terminology principles with UMLS and MedDRA mappings." ; dcterms:identifier "idisk" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-05-28T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ibkh.graph, kgr:service-kp.trapi ; schema1:identifier "idisk" ; schema1:name "integrated Dietary Supplement Knowledge Base" ; doap:repository ; skos:altLabel "iDISK" ; skos:inScheme "biomedical", "nutrition", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:ido a schema1:Ontology ; rdfs:label "Infectious Disease Ontology" ; dcterms:created "2025-06-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A set of interoperable ontologies that will together provide coverage of the infectious disease domain. IDO core is the upper-level ontology that hosts terms of general relevance across the domain, while extension ontologies host terms to specific to a particular part of the domain." ; dcterms:identifier "ido" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:efo.obo, kgr:efo.owl, kgr:ido.kg-bioportal, kgr:ido.owl ; schema1:name "Infectious Disease Ontology" ; doap:repository ; skos:inScheme "biomedical", "infectious disease" ; adms:status "Active" ; foaf:homepage . kgr:idomal a schema1:Ontology ; rdfs:label "Malaria Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An application ontology to cover all aspects of malaria as well as the intervention attempts to control it." ; dcterms:identifier "idomal" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:idomal.kg-bioportal, kgr:idomal.obo, kgr:idomal.owl ; schema1:name "Malaria Ontology" ; doap:repository ; skos:inScheme "biomedical", "infectious disease" ; adms:status "Inactive" ; foaf:homepage . kgr:iedison a schema1:DataSource ; rdfs:label "iEdison" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "iEdison (Interagency Edison) is the U.S. federal online reporting system that recipients of federal funding agreements use to report subject inventions, patents and utilization to the funding agency, as required by the Bayh-Dole Act and its implementing regulations. NIH built the original Edison system in 1995 and opened it to other agencies in 1997; NIST took over operation in 2022. Many agencies, including NIH, DOD components, EPA, USDA and NNSA, accept reports through it. Records are not public, but NIH RePORTER uses iEdison to link patents to NIH grants." ; dcterms:identifier "iedison" ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:iedison.api, kgr:iedison.api-docs, kgr:iedison.portal, kgr:nihreporter.patents ; schema1:name "iEdison" ; skos:altLabel "Edison", "Interagency Edison" ; skos:inScheme "research funding" ; adms:status "Active" ; foaf:homepage . kgr:iev a schema1:Ontology ; rdfs:label "Event (INOH pathway ontology)" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Description unavailable." ; dcterms:identifier "iev" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:iev.obo, kgr:iev.owl ; schema1:name "Event (INOH pathway ontology)" ; skos:inScheme "chemistry and biochemistry", "pathways" ; adms:status "Inactive" ; foaf:homepage . kgr:iid a schema1:DataSource ; rdfs:label "Integrated Interactions Database" ; dcterms:created "2026-05-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "IID is the Integrated Interactions Database, an online database of detected and predicted protein-protein interactions across human, model organism, and domesticated animal species, with context annotations for tissues, developmental stages, conservation, druggability, directionality, duration, mutations, and protein complexes." ; dcterms:identifier "iid" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , , , , , , , , , , , , , , , , , ; schema1:hasPart kgr:genecards.web.interface, kgr:iid.human_annotated_ppis, kgr:iid.human_annotated_ppis.readme, kgr:iid.mouse_annotated_ppis, kgr:iid.mouse_annotated_ppis.readme, kgr:iid.portal, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv ; schema1:name "Integrated Interactions Database" ; skos:inScheme "protein interactions", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:iidp a schema1:DataSource ; rdfs:label "Integrated Islet Distribution Program (IIDP)" ; dcterms:created "2026-07-01T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Integrated Islet Distribution Program (IIDP), based at City of Hope and funded by NIH/NIDDK, is the largest source of human islets for diabetes research in the United States. It procures, characterizes, and distributes high-quality human pancreatic islets to approved investigators, and many downstream studies deposit resulting omic data in public repositories such as the Gene Expression Omnibus." ; dcterms:identifier "iidp" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:iidp.portal, kgr:pankgraph.graph ; schema1:name "Integrated Islet Distribution Program (IIDP)" ; skos:inScheme "biomedical", "clinical", "diabetes mellitus", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:ikraph a schema1:KnowledgeGraph ; rdfs:label "iKraph" ; dcterms:created "2025-07-22T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A large-scale biomedical knowledge graph assembled from PubMed abstracts, containing over 22 million entities and 120 million relations." ; dcterms:identifier "ikraph" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ikraph.code, kgr:ikraph.graph, kgr:ikraph.graphdata, kgr:ikraph.site ; schema1:name "iKraph" ; doap:repository ; skos:inScheme "biomedical", "drug discovery", "genomics", "literature", "natural language processing" ; adms:status "Active" ; foaf:homepage . kgr:imex a schema1:Aggregator ; rdfs:label "IMEx Consortium" ; dcterms:created "2026-05-20T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "IMEx Consortium is an international collaboration of public molecular interaction databases that shares deep-curation effort to produce a non-redundant, freely accessible set of experimentally supported molecular interaction records in PSI-MI standard formats." ; dcterms:identifier "imex" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:imex.downloads, kgr:imex.portal, kgr:mint.mitab.all, kgr:mint.mitab.drosophila, kgr:mint.mitab.human, kgr:mint.mitab.mouse, kgr:mint.mitab.yeast, kgr:mint.psicquic, kgr:prokn.imex.complex.nodes, kgr:prokn.imex.protein.interacts_with.protein.edges, kgr:prokn.imex.protein.participates_in.complex.edges ; schema1:identifier "imex" ; schema1:name "IMEx Consortium" ; skos:inScheme "protein interactions", "proteomics", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:imgt a schema1:DataSource ; rdfs:label "IMGT" ; dcterms:created "2026-06-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "IMGT, the international ImMunoGeneTics information system, is a high-quality integrated knowledge resource specializing in the immunoglobulins (IG), T cell receptors (TR), major histocompatibility complex (MHC), and related proteins of the immune system across vertebrate species. It provides standardized data, tools, and reference directories built on the IMGT-ONTOLOGY." ; dcterms:identifier "imgt" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-06-17T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:genecards.web.interface, kgr:imgt.genedb, kgr:imgt.site ; schema1:name "IMGT" ; skos:inScheme "genomics", "immunology", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:immport a schema1:DataSource ; rdfs:label "ImmPort" ; dcterms:created "2026-07-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ImmPort (the Immunology Database and Analysis Portal) is a long-term, sustainable data repository funded by the NIAID Division of Allergy, Immunology, and Transplantation. It archives and freely distributes immunology research data from NIAID-funded clinical and mechanistic studies, including flow cytometry, gene expression, HLA typing, ELISA, and clinical trial data. ImmPort is one of the NIAID-sponsored repositories whose dataset metadata is harvested and indexed by the NIAID Data Ecosystem Discovery Portal." ; dcterms:identifier "immport" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:immport.api, kgr:immport.databrowser, kgr:immport.download-client, kgr:immport.drs, kgr:immport.portal, kgr:nde.graph ; schema1:name "ImmPort" ; doap:repository ; skos:inScheme "biomedical", "clinical", "immunology" ; adms:status "Active" ; foaf:homepage . kgr:imo-knowledge-graph a schema1:KnowledgeGraph ; rdfs:label "IMO Health Knowledge Graph" ; dcterms:created "2026-07-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The IMO Health Knowledge Graph is a commercial clinical knowledge graph developed by IMO Health (formerly Intelligent Medical Objects) that links clinical language, concepts, and codes into a shared context layer for healthcare data. It is built on IMO's clinical interface terminology, curated since 1994 by clinical informaticists and coding specialists, and contains millions of concepts, relationships, and cross-mappings derived from real-world clinical documentation. The graph encodes concept hierarchies, clinical relationships, and cross-maps among standard code systems including ICD-10-CM, ICD-9-CM, ICD-10-PCS, SNOMED CT, CPT, HCPCS, LOINC, RxNorm, and NDC. IMO reports that the underlying terminology is used by more than 90% of U.S. clinicians across 4,500+ provider organizations and every major EHR, and that it supports roughly 12 billion terminology search transactions per year. In April 2026 IMO Health opened direct developer access to the graph through a GraphQL API and a Model Context Protocol (MCP) server that exposes graph traversal, hierarchy, and cross-mapping operations as tools for AI agents. The graph itself is proprietary, and access requires a commercial license and credentials; no public bulk download or open query endpoint is available." ; dcterms:identifier "imo-knowledge-graph" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:imo-knowledge-graph.code_samples, kgr:imo-knowledge-graph.covid19_open_data, kgr:imo-knowledge-graph.crosswalks_api, kgr:imo-knowledge-graph.data, kgr:imo-knowledge-graph.developer_portal, kgr:imo-knowledge-graph.documentation, kgr:imo-knowledge-graph.graphql_api, kgr:imo-knowledge-graph.mcp_server, kgr:imo-knowledge-graph.terminology_server_api, kgr:imo-knowledge-graph.value_sets_api ; schema1:name "IMO Health Knowledge Graph" ; skos:altLabel "IMO Clinical Knowledge Graph", "IMO Knowledge Graph", "Intelligent Medical Objects Knowledge Graph" ; skos:inScheme "biomedical", "clinical", "clinical coding", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:imodulondb a schema1:DataSource ; rdfs:label "iModulonDB" ; dcterms:created "2025-11-06T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "iModulonDB is a knowledgebase of microbial transcriptional regulation derived from machine learning. It provides curated sets of iModulons - independently modulated groups of co-expressed genes identified through independent component analysis (ICA) of high-quality transcriptomic datasets - for prokaryotic organisms. The database offers interactive dashboards and analysis tools to explore transcriptional regulatory networks across multiple bacterial species, enabling researchers to understand gene regulation, discover new regulators, and analyze condition-specific cellular responses." ; dcterms:identifier "imodulondb" ; dcterms:isReferencedBy , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:imodulondb.browser, kgr:imodulondb.datasets, kgr:imodulondb.imodulonminer, kgr:imodulondb.modulome_workflow, kgr:imodulondb.pymodulon ; schema1:name "iModulonDB" ; doap:repository ; skos:inScheme "gene regulation", "genomics", "information technology", "machine learning", "microbiology", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:impc a schema1:DataSource ; rdfs:label "International Mouse Phenotyping Consortium" ; dcterms:created "2026-05-20T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The International Mouse Phenotyping Consortium (IMPC) is a global functional genomics program that generates and phenotypes knockout mouse lines at scale to identify the functions of protein-coding genes and connect mouse phenotypes to human biology and disease." ; dcterms:identifier "impc" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , ; schema1:hasPart kgr:digcfdekg.graph, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:impc.portal, kgr:prokn.impc.impcallele.impc_ensembl_id.impcmousegene.edges, kgr:prokn.impc.impchumangene.interacts_with.impchumangene.edges, kgr:prokn.impc.impchumangene.interacts_with.impcmousegene.edges, kgr:prokn.impc.impchumangene.orthologous_to.impcmousegene.edges, kgr:prokn.impc.impcmousegene.impc_mouse_allele_id.impcallele.edges, kgr:prokn.impc.impcmousegene.impc_mouse_alleles.impcallele.edges, kgr:prokn.impc.impcmousegene.interacts_with.impchumangene.edges, kgr:prokn.impc.impcmousegene.interacts_with.impcmousegene.edges, kgr:prokn.impc.impcmousegene.orthologous_to.impchumangene.edges, kgr:prokn.impc.imppublication.impc_alleles.impcallele.edges, kgr:prokn.pir.impchumangene.orthologous_to.protein.edges, kgr:prokn.pir.impcmousegene.has_gene_product.protein.edges ; schema1:name "International Mouse Phenotyping Consortium" ; skos:inScheme "biomedical", "genomics", "model organisms", "organisms", "phenotype" ; adms:status "Active" ; foaf:homepage . kgr:imr a schema1:Ontology ; rdfs:label "Molecule role (INOH Protein name/family name ontology)" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Description unavailable." ; dcterms:identifier "imr" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:name "Molecule role (INOH Protein name/family name ontology)" ; skos:inScheme "chemistry and biochemistry", "proteomics" ; adms:status "Inactive" ; foaf:homepage . kgr:inchikey a schema1:DataModel ; rdfs:label "InChIKey" ; dcterms:created "2026-02-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "InChIKey is a fixed-length hashed representation of the IUPAC International Chemical Identifier (InChI), used for indexing and linking chemical structures across resources." ; dcterms:identifier "inchikey" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:inchikey.docs, kgr:inchikey.inchi_software, kgr:inchikey.web_demo, kgr:molepro.graph.edges, kgr:molepro.graph.nodes, kgr:unibiomap.auxs, kgr:unibiomap.compound_desc, kgr:unibiomap.links, kgr:unibiomap.pred, kgr:unibiomap.pred.full ; schema1:name "InChIKey" ; doap:repository ; skos:altLabel "IUPAC InChIKey", "InChI key" ; skos:inScheme "cheminformatics", "chemistry and biochemistry", "drug discovery" ; adms:status "Active" ; foaf:homepage . kgr:indra a schema1:Aggregator ; rdfs:label "INDRA" ; dcterms:created "2025-07-19T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models." ; dcterms:identifier "indra" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:indra.api.cogex, kgr:indra.cogex.code, kgr:indra.discovery, kgr:indra.python, kgr:ncipidkg.graph.ttl, kgr:np-kg.graph.networkx, kgr:np-kg.graph.tsv ; schema1:name "INDRA" ; doap:repository ; skos:inScheme "biomedical", "literature", "natural language processing", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:innatedb a schema1:DataSource ; rdfs:label "InnateDB" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "InnateDB is a publicly available database of genes, proteins, experimentally-verified interactions and signaling pathways involved in the innate immune response of humans, mice and bovines to microbial infection, with over 18,780 manually curated interactions and integrated bioinformatics and visualization tools for systems-level analysis." ; dcterms:identifier "innatedb" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:genecards.web.interface, kgr:innatedb.downloads, kgr:innatedb.portal, kgr:pathwaycommons.biopax, kgr:pathwaycommons.downloads, kgr:pathwaycommons.gmt, kgr:pathwaycommons.sif, kgr:pathwaycommons.txt, kgr:service-kp.trapi ; schema1:identifier "innatedb" ; schema1:name "InnateDB" ; skos:altLabel "InnateDB" ; skos:inScheme "host-pathogen interactions", "immunology", "microbiology", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:ino a schema1:Ontology ; rdfs:label "Interaction Network Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology of interactions and interaction networks" ; dcterms:identifier "ino" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ino.kg-bioportal, kgr:ino.owl ; schema1:identifier "ino" ; schema1:name "Interaction Network Ontology" ; doap:repository ; skos:inScheme "biological systems", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:inoh a schema1:DataSource ; rdfs:label "INOH" ; dcterms:created "2026-06-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "INOH (Integrating Network Objects with Hierarchies) is a highly structured, manually curated database of signal transduction and metabolic pathways. Pathways are annotated with custom event and molecule-role ontologies and span multiple organisms including mammals, Xenopus laevis, Drosophila melanogaster, and Caenorhabditis elegans. INOH data was distributed in INOH XML and BioPAX formats and is widely reused by pathway aggregators. The project appears to be no longer actively maintained." ; dcterms:identifier "inoh" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:inoh.pathways, kgr:lsdb-archive.inoh, kgr:pathwaycommons.biopax, kgr:pathwaycommons.downloads, kgr:pathwaycommons.gmt, kgr:pathwaycommons.sif, kgr:pathwaycommons.txt ; schema1:name "INOH" ; skos:altLabel "Integrating Network Objects with Hierarchies" ; skos:inScheme "pathways", "signal transduction", "systems biology" ; adms:status "Orphaned" ; foaf:homepage . kgr:insight a schema1:KnowledgeGraph ; rdfs:label "INSIGHT" ; dcterms:created "2025-08-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "INSIGHT is an integrative knowledge graph resource designed to support translational and clinical informatics by linking heterogeneous biomedical entities (genes, variants, diseases, phenotypes, pathways, drugs, and clinical concepts) with provenance and harmonized semantics to enable multi-scale reasoning and decision support." ; dcterms:identifier "insight" ; dcterms:isReferencedBy ; dcterms:modified "2026-06-12T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:insight.portal ; schema1:name "INSIGHT" ; skos:inScheme "biomedical", "clinical", "genomics", "systems biology", "toxicology" ; adms:status "Active" ; foaf:homepage . kgr:intact a schema1:Aggregator ; rdfs:label "IntAct" ; dcterms:created "2025-07-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "IntAct is an open, curated molecular interaction database maintained at EMBL‑EBI. It aggregates experimentally-derived interaction evidence from literature curation and direct submissions, and distributes data in PSI‑MI XML and MITAB formats along with curated datasets and documentation." ; dcterms:identifier "intact" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:afcs.intact.mitab, kgr:automat.intact, kgr:automat.robokopkg, kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:bioteque.embeddings, kgr:cancer-genome-interpreter.clinicalkg.graph, kgr:clinicalkg.graph, kgr:dbnsfp.academic, kgr:dbnsfp.commercial, kgr:drkg.graph, kgr:epigraphdb.graph, kgr:genecards.protein.interactions, kgr:genecards.web.interface, kgr:genemania.networks, kgr:hippie.current.mitab, kgr:hippie.current.tab, kgr:hpidb.mitab, kgr:humannet.network, kgr:humannet.network.symbol, kgr:iid.human_annotated_ppis, kgr:iid.mouse_annotated_ppis, kgr:imex.downloads, kgr:imex.portal, kgr:intact.api, kgr:intact.datasets, kgr:intact.docs.user-guide, kgr:intact.ftp.psi25, kgr:intact.ftp.psi30, kgr:intact.ftp.psimitab, kgr:intact.ftp.psimitab.all, kgr:intact.portal, kgr:irefindex.database, kgr:kg-covid-19.graph, kgr:mint.mitab.all, kgr:mint.mitab.drosophila, kgr:mint.mitab.human, kgr:mint.mitab.mouse, kgr:mint.mitab.yeast, kgr:mint.psicquic, kgr:pathwaycommons.biopax, kgr:pathwaycommons.downloads, kgr:pathwaycommons.gmt, kgr:pathwaycommons.sif, kgr:pathwaycommons.txt, kgr:proteomehd.data, kgr:proteomehd.intact_interactions, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db, kgr:rtx-kg2.graph.edges, kgr:rtx-kg2.graph.nodes, kgr:rtx-kg2.neo4j, kgr:string.cog.links, kgr:string.cog.links.detailed, kgr:string.database, kgr:string.protein.links, kgr:string.protein.links.detailed, kgr:string.protein.links.full, kgr:string.protein.physical.links, kgr:string.protein.physical.links.detailed, kgr:string.protein.physical.links.full, kgr:translator.intact.graph, kgr:translator.translator_kg.graph, kgr:unibiomap.auxs, kgr:unibiomap.links, kgr:unibiomap.pred, kgr:unibiomap.pred.full ; schema1:identifier "intact" ; schema1:name "IntAct" ; doap:repository ; skos:altLabel "IMEx IntAct", "IntAct Molecular Interaction Database" ; skos:inScheme "protein interactions", "proteomics", "systems biology" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ebi . kgr:intermine a schema1:DataSource ; rdfs:label "InterMine" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "InterMine is an open-source biological data warehouse system for integrating heterogeneous biological data sources and exposing them through customizable web interfaces, query templates, and RESTful web-service APIs." ; dcterms:identifier "intermine" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:intermine.documentation, kgr:intermine.registry, kgr:intermine.registry-api, kgr:intermine.software, kgr:mousemine.api, kgr:mousemine.querybuilder, kgr:mousemine.templates, kgr:mousemine.web ; schema1:name "InterMine" ; doap:repository ; skos:inScheme "genomics", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:interpro a schema1:DataSource ; rdfs:label "InterPro" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "InterPro is a database of protein families, domains and functional sites in which identifiable features found in known proteins can be applied to unknown protein sequences." ; dcterms:identifier "interpro" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:bioteque.embeddings, kgr:dbnsfp.academic, kgr:dbnsfp.commercial, kgr:disprot.downloads, kgr:drugmechdb.graph, kgr:genecards.web.interface, kgr:genophenoenvo-kg.data, kgr:goa.mapping-files, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:interpro.api, kgr:interpro.entry_list, kgr:interpro.interpro2go, kgr:interpro.interproscan, kgr:interpro.match_complete, kgr:interpro.parent_child_tree, kgr:interpro.protein2ipr, kgr:interpro.uniparc_match, kgr:interpro.web, kgr:interpro.xml, kgr:kinace.portal, kgr:mechreponet.kg, kgr:mygene.api, kgr:obo-db-ingest.interpro.json, kgr:obo-db-ingest.interpro.obo, kgr:obo-db-ingest.interpro.owl, kgr:obo-db-ingest.interpro.tsv, kgr:prokn.interpro.domain.is_a.domain.edges, kgr:prokn.interpro.protein.has_domain.domain.edges, kgr:spoke-okn.graph, kgr:spoke.graph, kgr:string.cog.links, kgr:string.cog.links.detailed, kgr:string.database, kgr:string.protein.links, kgr:string.protein.links.detailed, kgr:string.protein.links.full, kgr:string.protein.physical.links, kgr:string.protein.physical.links.detailed, kgr:string.protein.physical.links.full ; schema1:identifier "interpro" ; schema1:name "InterPro" ; doap:repository ; skos:inScheme "drug discovery", "genomics", "protein domains", "proteomics" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ebi . kgr:inxight-drugs a schema1:DataSource ; rdfs:label "Inxight: Drugs" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Inxight Drugs is a comprehensive and curated drug database developed by the National Center for Advancing Translational Sciences (NCATS) to support translational research. It provides rigorously curated information on drug substances, including their regulatory approval and development status, ingredient definitions, mechanisms of action, biological targets, and pharmacological class. The resource resolves ambiguity in substance identity by applying the FDA Global Substance Registration System (GSRS) and links each substance to detailed marketing, regulatory, and clinical development metadata. Inxight Drugs serves as an upstream primary source for downstream knowledge resources such as the Molecular Data Provider (MolePro) and the Molecular Data Knowledge Provider." ; dcterms:identifier "inxight-drugs" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-08T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:inxight-drugs.api, kgr:inxight-drugs.portal, kgr:molepro.api, kgr:molepro.catalog, kgr:molepro.graph.edges, kgr:molepro.graph.nodes, kgr:molepro.trapi ; schema1:identifier "inxight-drugs" ; schema1:name "Inxight: Drugs" ; skos:inScheme "chemistry and biochemistry", "clinical", "drug discovery", "pharmacology" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ncats . kgr:ipr a schema1:Ontology ; rdfs:label "Protein Domains" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Description unavailable." ; dcterms:identifier "ipr" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:name "Protein Domains" ; skos:inScheme "chemistry and biochemistry", "protein domains", "proteomics" ; adms:status "Inactive" ; foaf:homepage . kgr:iproclass a schema1:DataSource ; rdfs:label "iProClass" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "iProClass was an integrated protein classification database that provided comprehensive annotations by integrating information from UniProt, PIR, and multiple external databases including protein family, function, pathway, and interaction data." ; dcterms:identifier "iproclass" ; dcterms:isReferencedBy , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:iproclass.pir-docs, kgr:iproclass.portal ; schema1:identifier "iproclass" ; schema1:name "iProClass" ; skos:altLabel "Integrated Protein Classification", "iProClass" ; skos:inScheme "protein domains", "proteomics" ; adms:status "Inactive" ; foaf:homepage . kgr:iprox a schema1:DataSource ; rdfs:label "iProX" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "iProX (integrated Proteome resources) is a public repository for mass spectrometry-based proteomics data, hosted in China by the Beijing Proteome Research Center and a member of the ProteomeXchange consortium. It accepts submissions, assigns IPX project accessions alongside ProteomeXchange PXD accessions, and serves dataset metadata and files through a web portal, RESTful web services and Aspera. Datasets submitted since 2023-03-23 are released under CC0 and earlier datasets under CC BY 4.0." ; dcterms:identifier "iprox" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:iprox.api, kgr:iprox.data-license, kgr:iprox.portal, kgr:iprox.projects, kgr:omicsdi.api, kgr:omicsdi.portal, kgr:proteomexchange.dataset-list, kgr:proteomexchange.dataset-records, kgr:proteomexchange.proteomecentral ; schema1:name "iProX" ; skos:altLabel "integrated Proteome resources" ; skos:inScheme "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:iptmnet a schema1:DataSource ; rdfs:label "iPTMnet" ; dcterms:created "2025-11-13T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "iPTMnet is an integrated resource for protein post-translational modification (PTM) network discovery that employs an integrative bioinformatics approach combining text mining, data mining, and ontological representation to capture rich PTM information, including PTM enzyme-substrate-site relationships, PTM-specific protein-protein interactions (PPIs), and PTM conservation across species." ; dcterms:identifier "iptmnet" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:epsd.download, kgr:iptmnet.api, kgr:iptmnet.download.readme, kgr:iptmnet.portal, kgr:iptmnet.protein, kgr:iptmnet.ptm, kgr:iptmnet.python_client, kgr:iptmnet.r_client, kgr:iptmnet.score, kgr:kinace.interactions, kgr:kinace.portal, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:prokn.iptmnet.protein.catalyzes.ptmsite.edges, kgr:prokn.iptmnet.protein.has_site.site.edges ; schema1:identifier "iptmnet" ; schema1:name "iPTMnet" ; skos:inScheme "post-translational modification", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:irefindex a schema1:Aggregator ; rdfs:label "iRefIndex" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "iRefIndex is a consolidated protein interaction database that aggregates and indexes interaction data from multiple primary databases using sequence-based hash keys to identify and group redundant interaction records while maintaining provenance information." ; dcterms:identifier "irefindex" ; dcterms:isReferencedBy , , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:humannet.network, kgr:humannet.network.symbol, kgr:iid.human_annotated_ppis, kgr:iid.mouse_annotated_ppis, kgr:irefindex.database, kgr:irefindex.irefr, kgr:irefindex.irefscape, kgr:irefindex.irefweb, kgr:redrugs.source ; schema1:identifier "irefindex" ; schema1:name "iRefIndex" ; skos:inScheme "protein interactions", "proteomics" ; adms:status "Inactive" ; foaf:homepage . kgr:isrctn a schema1:DataSource ; rdfs:label "ISRCTN Registry" ; dcterms:created "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ISRCTN is a primary clinical study registry recognised by the World Health Organization International Clinical Trials Registry Platform (WHO ICTRP) and the ICMJE. Launched in 2000 as the International Standard Randomised Controlled Trial Number scheme, it now registers any interventional or observational study that assesses health interventions in humans, and is positioned as the UK's clinical study registry. Each record carries a unique ISRCTN identifier, the WHO 24-item minimum trial registration dataset, plain English summaries, results and IPD sharing plans. The registry is run by ISRCTN, a non-profit, through BioMed Central (Springer Nature), and its records are available through a web search interface and a public XML API." ; dcterms:identifier "isrctn" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ecrin-mdr.api, kgr:ecrin-mdr.portal, kgr:isrctn.api, kgr:isrctn.api-docs, kgr:isrctn.definitions, kgr:isrctn.portal, kgr:who-ictrp.portal, kgr:who-ictrp.search-export, kgr:who-ictrp.web-service ; schema1:name "ISRCTN Registry" ; skos:altLabel "ISRCTN", "International Standard Randomised Controlled Trial Number", "The UK's Clinical Study Registry" ; skos:inScheme "biomedical", "clinical", "clinical trials", "public health" ; adms:status "Active" ; foaf:homepage . kgr:itis a schema1:DataSource ; rdfs:label "ITIS" ; dcterms:created "2025-09-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Integrated Taxonomic Information System (ITIS) provides authoritative taxonomic information on plants, animals, fungi, and microbes of North America and the world. ITIS compiles standardized scientific names, common names, taxonomic serial numbers (TSNs), hierarchical classification, and associated metadata curated through interagency and international collaboration to support biodiversity data integration, ecological research, regulatory processes, and interoperability across biological information systems." ; dcterms:identifier "itis" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:catalogue-of-life.annual-releases, kgr:catalogue-of-life.downloads, kgr:foodb.data.csv, kgr:foodb.data.json, kgr:foodb.data.mysql, kgr:foodb.data.xml, kgr:foodb.web, kgr:itis.api, kgr:itis.mysql_tables, kgr:itis.portal, kgr:itis.sqlite, kgr:mangal.api, kgr:mangal.docs, kgr:mangal.portal, kgr:mangal.rmangal, kgr:obo-db-ingest.itis.json, kgr:obo-db-ingest.itis.obo, kgr:obo-db-ingest.itis.owl, kgr:obo-db-ingest.itis.tsv ; schema1:name "ITIS" ; skos:inScheme "biodiversity", "environment", "organisms", "taxonomy" ; adms:status "Active" ; foaf:homepage . kgr:iucn-red-list a schema1:DataSource ; rdfs:label "IUCN Red List of Threatened Species" ; dcterms:created "2026-07-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The IUCN Red List of Threatened Species is the world's most comprehensive information source on the global extinction risk status of animal, fungus, and plant species. It provides assessments of conservation status, population trends, threats, habitats, and geographic ranges, and is maintained by the International Union for Conservation of Nature (IUCN)." ; dcterms:identifier "iucn-red-list" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:iucn-red-list.api, kgr:iucn-red-list.portal, kgr:wildlifekn.graph ; schema1:name "IUCN Red List of Threatened Species" ; skos:inScheme "biodiversity", "environment", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:jaspar a schema1:DataSource ; rdfs:label "JASPAR" ; dcterms:created "2026-06-15T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "JASPAR is an open-access database of curated, non-redundant transcription factor (TF) binding profiles stored as position frequency matrices (PFMs). The profiles span multiple species across six taxonomic groups and are derived from published collections of experimentally defined TF binding sites. JASPAR provides web-based browsing and visualization, programmatic access through a RESTful API, and bulk downloads of the profiles in several standard matrix formats." ; dcterms:identifier "jaspar" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:dorothea.graph, kgr:jaspar.api, kgr:jaspar.docs, kgr:jaspar.matrices, kgr:jaspar.web ; schema1:name "JASPAR" ; doap:repository ; skos:inScheme "gene regulation", "genomics", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:jpost a schema1:DataSource ; rdfs:label "jPOST" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "jPOST (Japan ProteOme STandard Repository/Database) is a Japanese proteomics data environment and a ProteomeXchange member. jPOSTrepo accepts raw and processed mass spectrometry datasets, and jPOSTdb reanalyzes public datasets with a unified workflow into a standardized database of peptides, proteins and post-translational modifications, also published as RDF. The FAQ states that all data in jPOSTrepo and jPOSTdb are released under CC0." ; dcterms:identifier "jpost" ; dcterms:isReferencedBy , , ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:jpost.database, kgr:jpost.help, kgr:jpost.ontology, kgr:jpost.portal, kgr:jpost.protein, kgr:jpost.psm, kgr:jpost.psm-modification, kgr:jpost.rdf, kgr:jpost.rdf-docs, kgr:jpost.repository, kgr:jpost.sparql, kgr:omicsdi.api, kgr:omicsdi.portal, kgr:proteomexchange.dataset-list, kgr:proteomexchange.dataset-records, kgr:proteomexchange.proteomecentral, kgr:rdf-portal.sparql.primary ; schema1:name "jPOST" ; skos:altLabel "Japan ProteOme STandard Repository/Database", "jPOSTdb", "jPOSTrepo" ; skos:inScheme "biomedical", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:jws-online a schema1:DataSource ; rdfs:label "JWS Online" ; dcterms:created "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "JWS Online is a repository of curated kinetic models of biological systems with a browser-based simulation platform, developed by Jacky Snoep's group at Stellenbosch University with mirrors in Amsterdam and Manchester. It holds over 800 curated models (SBML-compliant, with downloads in SBML, Mathematica, JWS and PySCeS formats), a database of curated SED-ML simulation experiments for reproducing published figures, a model builder, and a REST API. Its models are shared with BioModels and integrated into FAIRDOMHub and FAIRDOM-SEEK." ; dcterms:identifier "jws-online" ; dcterms:isReferencedBy , ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:jws-online.api, kgr:jws-online.docs, kgr:jws-online.manuscripts, kgr:jws-online.models, kgr:jws-online.sbml, kgr:jws-online.simulations ; schema1:name "JWS Online" ; skos:altLabel "JWS", "Java Web Simulation" ; skos:inScheme "biological systems", "metabolism", "pathways", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:kegg a schema1:DataSource ; rdfs:label "KEGG" ; dcterms:created "2025-03-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Kyoto Encyclopedia of Genes and Genomes (KEGG) is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies." ; dcterms:identifier "kegg" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , , , , , , , ; schema1:hasPart kgr:babel.compendia, kgr:cardiokg.neo4j, kgr:cfde-gse.genesets, kgr:cfde-gse.graph, kgr:ctd.chem_pathways_enriched, kgr:ctd.diseases_pathways, kgr:ctd.genes_pathways, kgr:ctd.pathways, kgr:dbnsfp.academic, kgr:dbnsfp.commercial, kgr:enrichr-kg.graph, kgr:foodb.data.csv, kgr:foodb.data.json, kgr:foodb.data.mysql, kgr:foodb.data.xml, kgr:foodb.web, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:humannet.network, kgr:humannet.network.symbol, kgr:ibkh.graph, kgr:kegg.annotation, kgr:kegg.api, kgr:kegg.blastkoala, kgr:kegg.brite, kgr:kegg.compound, kgr:kegg.disease, kgr:kegg.drug, kgr:kegg.genes, kgr:kegg.genome, kgr:kegg.glycan, kgr:kegg.mapper, kgr:kegg.medicus, kgr:kegg.module, kgr:kegg.orthology, kgr:kegg.pathway, kgr:kegg.pathway.kgml, kgr:kegg.reaction, kgr:kegg.syntax, kgr:kegg.web, kgr:kegg.webapps, kgr:kinace.portal, kgr:lncrnalyzr.graph, kgr:lsdb-archive.kegg-medicus, kgr:micromap.api, kgr:msigdb.downloads.human, kgr:msigdb.downloads.mouse, kgr:mygene.api, kgr:obo-db-ingest.bigg.metabolite.sssom.tsv, kgr:obo-db-ingest.kegg.genome.json, kgr:obo-db-ingest.kegg.genome.obo, kgr:obo-db-ingest.kegg.genome.owl, kgr:obo-db-ingest.kegg.genome.tsv, kgr:obo-db-ingest.rhea.sssom.tsv, kgr:openpredict.api, kgr:openpredict.predictions, kgr:pathwaycommons.biopax, kgr:pathwaycommons.downloads, kgr:pathwaycommons.gmt, kgr:pathwaycommons.sif, kgr:pathwaycommons.txt, kgr:pubchem.substances.asn, kgr:pubchem.substances.sdf, kgr:rampdb.database, kgr:rtx-kg2.graph.edges, kgr:rtx-kg2.graph.nodes, kgr:rtx-kg2.neo4j, kgr:skm.ckn.v1.annotations, kgr:skm.ckn.v1.graph, kgr:skm.ckn.v2.annotations, kgr:skm.ckn.v2.graph, kgr:skm.pss.live.boolnet.annotations, kgr:skm.pss.live.boolnet.graph, kgr:skm.pss.live.dot, kgr:skm.pss.live.sbgn, kgr:skm.pss.live.sbml, kgr:skm.pss.live.sif.dinar.graph, kgr:skm.pss.live.sif.original.annotations, kgr:skm.pss.live.sif.original.graph, kgr:skm.pss.live.sif.projection.annotations, kgr:skm.pss.live.sif.projection.graph, kgr:spoke-okn.graph, kgr:spoke.graph, kgr:stitch.api, kgr:stitch.downloads, kgr:stitch.portal, kgr:string.cog.links, kgr:string.cog.links.detailed, kgr:string.database, kgr:string.protein.links, kgr:string.protein.links.detailed, kgr:string.protein.links.full, kgr:string.protein.physical.links, kgr:string.protein.physical.links.detailed, kgr:string.protein.physical.links.full, kgr:togows.rest-api, kgr:ttd.kegg-pathways, kgr:unibiomap.auxs, kgr:unibiomap.links, kgr:unibiomap.pathway_desc, kgr:unibiomap.pred, kgr:unibiomap.pred.full ; schema1:identifier "kegg" ; schema1:name "KEGG" ; skos:inScheme "biomedical", "chemistry and biochemistry", "drug discovery", "genomics", "pathways", "pharmacology", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:kentucky-cancer-registry a schema1:DataSource ; rdfs:label "Kentucky Cancer Registry" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Kentucky Cancer Registry (KCR) is Kentucky's statewide population-based central cancer registry, hosted at the University of Kentucky and the Markey Cancer Center. KCR collects, manages, and reports incidence, treatment, and outcome data for cancers diagnosed among Kentucky residents. It is a participant in both the National Cancer Institute's Surveillance, Epidemiology, and End Results (SEER) Program and the Centers for Disease Control and Prevention's National Program of Cancer Registries (NPCR). KCR data serve as the primary data source for the Kentucky Cancer Registry Knowledge Graph (the .kcr graph) within the Cancer Registry KG." ; dcterms:identifier "kentucky-cancer-registry" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cancer-registry-kg.kcr, kgr:kentucky-cancer-registry.cancer-rates, kgr:kentucky-cancer-registry.research ; schema1:name "Kentucky Cancer Registry" ; skos:inScheme "biomedical", "cancer", "clinical", "disease registries", "public health" ; adms:status "Active" ; foaf:homepage . kgr:kg-alzheimers a schema1:KnowledgeGraph ; rdfs:label "KG-Alzheimers" ; dcterms:created "2025-03-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A Knowledge Graph for integrating data related to Alzheimer's disease, supporting Retrieval-Augmented Generation (RAG) and AI assistant development for Alzheimer's disease research." ; dcterms:identifier "kg-alzheimers" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:kg-alzheimers.graph ; schema1:name "KG-Alzheimers" ; doap:repository ; skos:inScheme "biomedical", "information technology", "machine learning", "neurodegenerative disease", "neuroscience" ; adms:status "Active" ; foaf:homepage . kgr:kg-bioportal a schema1:Aggregator ; rdfs:label "KG-Bioportal" ; dcterms:created "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "KG-Bioportal transforms the ontologies hosted by BioPortal into KGX node and edge files, so each can be used as a knowledge graph. Transforms run monthly on GitHub Actions and every successful result is published as a release asset, alongside a manifest of per-ontology status and node/edge counts. Over a thousand ontologies are covered; the graph browser is the authoritative listing." ; dcterms:identifier "kg-bioportal" ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:kg-bioportal.browser, kgr:kg-bioportal.code, kgr:kg-bioportal.graphs, kgr:kg-bioportal.manifest ; schema1:name "KG-Bioportal" ; doap:repository ; skos:inScheme "biomedical", "clinical", "general", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:kg-covid-19 a schema1:KnowledgeGraph ; rdfs:label "KG-COVID-19" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A knowledge graph for COVID-19 and SARS-COV-2." ; dcterms:identifier "kg-covid-19" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:kg-covid-19.graph, kgr:neo.model, kgr:neo.obo ; schema1:name "KG-COVID-19" ; doap:repository ; skos:inScheme "biomedical", "infectious disease", "microbiology", "organisms", "public health" ; adms:status "Active" ; foaf:homepage . kgr:kg-ebi-gene2pheno a schema1:KnowledgeGraph ; rdfs:label "EBI Gene2Phenotype KG" ; dcterms:created "2025-05-07T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ingest of EMBL-EBI's Gene2Phenotype resource, for Translator use (output in Translator standards and NodeNormed, using own custom pipeline)" ; dcterms:identifier "kg-ebi-gene2pheno" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:kg-ebi-gene2pheno.edges.kgx, kgr:kg-ebi-gene2pheno.edges.trapi, kgr:kg-ebi-gene2pheno.nodes.kgx ; schema1:name "EBI Gene2Phenotype KG" ; doap:repository ; skos:inScheme "biomedical", "genomics", "phenotype" ; adms:status "Active" ; foaf:homepage . kgr:kg-enp a schema1:KnowledgeGraph ; rdfs:label "ENPKG" ; dcterms:created "2026-01-06T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ENP-KG is a specialized knowledge graph for experimental natural products discovery and characterization. It integrates chemical spectroscopy data, natural product structures, and organism information to support drug discovery research and chemical ecology applications. The knowledge graph provides a unified platform for exploring relationships between organisms and their secondary metabolites." ; dcterms:identifier "kg-enp" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:kg-enp.graph, kgr:kg-enp.graphdb, kgr:kg-enp.portal, kgr:kg-enp.sparql, kgr:kg-enp.vocabulary, kgr:kg-enp.workflow ; schema1:name "ENPKG" ; doap:repository ; skos:altLabel "ENPKG", "Experimental Natural Products Knowledge Graph" ; skos:inScheme "chemistry and biochemistry", "drug discovery", "natural products", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:kg-fm a schema1:KnowledgeGraph ; rdfs:label "KG-FM" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "KG-FM is a Neo4j knowledge graph for framework materials, including metal-organic frameworks, covalent-organic frameworks, and hydrogen-bonded organic frameworks. It was constructed with large language model extraction over more than 100,000 Web of Science articles and covers synthesis, properties, applications, publications, and other framework-material relationships." ; dcterms:identifier "kg-fm" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:kg-fm.abstract_text, kgr:kg-fm.answer_references, kgr:kg-fm.demonstration_video, kgr:kg-fm.graph, kgr:kg-fm.json_extractions, kgr:kg-fm.question_answer, kgr:kg-fm.workflow ; schema1:name "KG-FM" ; doap:repository ; skos:altLabel "Framework Materials Knowledge Graph", "KG-FM", "KGFM" ; skos:inScheme "chemistry and biochemistry", "information technology", "other" ; adms:status "Active" ; foaf:homepage . kgr:kg-idg a schema1:KnowledgeGraph ; rdfs:label "KG-IDG" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "a Knowledge Graph for Illuminating the Druggable Genome" ; dcterms:identifier "kg-idg" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:kg-idg.graph ; schema1:name "KG-IDG" ; doap:repository ; skos:inScheme "biomedical", "drug discovery" ; adms:status "Active" ; foaf:homepage . kgr:kg-jensenlab-diseases a schema1:KnowledgeGraph ; rdfs:label "JensenLab DISEASES KG" ; dcterms:created "2025-05-06T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ingest of Jensen Lab's DISEASES resource, for Translator use (output in Translator standards and NodeNormed, using own custom pipeline)" ; dcterms:identifier "kg-jensenlab-diseases" ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:enrichr-kg.graph, kgr:kg-jensenlab-diseases.docs, kgr:kg-jensenlab-diseases.edges.kgx, kgr:kg-jensenlab-diseases.edges.trapi, kgr:kg-jensenlab-diseases.nodes.kgx ; schema1:name "JensenLab DISEASES KG" ; doap:repository ; skos:inScheme "biomedical", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:kg-microbe a schema1:KnowledgeGraph ; rdfs:label "KG Microbe" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A Knowledge Graph about microbes. The KG is designed to integrate diverse knowledge about microbes from a variety of structured and unstructured sources." ; dcterms:identifier "kg-microbe" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , ; schema1:hasPart kgr:kg-microbe.graph.biomedical, kgr:kg-microbe.graph.biomedical-function, kgr:kg-microbe.graph.core, kgr:kg-microbe.graph.function, kgr:kg-microbe.graph.raw, kgr:kg-microbe.graph.uniprot ; schema1:name "KG Microbe" ; doap:repository ; skos:inScheme "microbiology", "organisms", "phenotype" ; adms:status "Active" ; foaf:homepage . kgr:kg-monarch a schema1:KnowledgeGraph ; rdfs:label "KG Monarch" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Monarch Initiative is an international consortium that leads key global standards and semantic data integration technologies. To maximize utility and impact, the Monarch platform is composed of multiple open-source, open-access components." ; dcterms:identifier "kg-monarch" ; dcterms:license ; dcterms:modified "2026-10-05T21:12:50+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cpathkg.code, kgr:epigraphdb.graph, kgr:genecards.web.interface, kgr:kg-monarch.associations.all, kgr:kg-monarch.associations.causal_gene_to_disease, kgr:kg-monarch.associations.chemical_or_drug_to_disease, kgr:kg-monarch.associations.chemical_to_disease, kgr:kg-monarch.associations.chemical_to_pathway, kgr:kg-monarch.associations.correlated_gene_to_disease, kgr:kg-monarch.associations.disease_to_inheritance, kgr:kg-monarch.associations.disease_to_location, kgr:kg-monarch.associations.disease_to_phenotype, kgr:kg-monarch.associations.gene_to_expression_site, kgr:kg-monarch.associations.gene_to_gene_homology, kgr:kg-monarch.associations.gene_to_pathway, kgr:kg-monarch.associations.gene_to_phenotype, kgr:kg-monarch.associations.genotype_to_disease, kgr:kg-monarch.associations.genotype_to_gene, kgr:kg-monarch.associations.genotype_to_phenotype, kgr:kg-monarch.associations.genotype_to_variant, kgr:kg-monarch.associations.macromolecular_machine_to_biological_process, kgr:kg-monarch.associations.macromolecular_machine_to_cellular_component, kgr:kg-monarch.associations.macromolecular_machine_to_molecular_activity, kgr:kg-monarch.associations.pairwise_gene_to_gene_interaction, kgr:kg-monarch.associations.variant_to_disease, kgr:kg-monarch.associations.variant_to_gene, kgr:kg-monarch.associations.variant_to_phenotype, kgr:kg-monarch.graph, kgr:kg-monarch.graph.duckdb, kgr:kg-monarch.graph.jsonl, kgr:kg-monarch.graph.jsonl.edges, kgr:kg-monarch.graph.jsonl.nodes, kgr:kg-monarch.graph.neo4j, kgr:kg-monarch.graph.neo4j.edges, kgr:kg-monarch.graph.neo4j.nodes, kgr:kg-monarch.graph.rdf, kgr:kg-monarch.phenio.semsql, kgr:kg-monarch.solr ; schema1:name "KG Monarch" ; doap:repository ; skos:inScheme "biomedical", "genomics", "phenotype" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:monarchinitiative . kgr:kg-predict a schema1:KnowledgeGraph ; rdfs:label "KG-Predict" ; dcterms:created "2025-11-22T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "KG-Predict is a knowledge graph computational framework for drug repurposing that integrates multiple types of genotypic and phenotypic data. The framework constructs GP-KG (Genotype-Phenotype Knowledge Graph), containing 1,246,726 associations between 61,146 biomedical entities from various databases. KG-Predict uses graph embedding methods to learn low-dimensional representations of entities and relations, enabling inference of new drug-disease interactions. The system has been validated for identifying repositioned candidate drugs, particularly for Alzheimer's disease, achieving high performance metrics (AUROC = 0.981, AUPR = 0.409) and successfully prioritizing FDA-approved and clinical trial anti-AD drugs." ; dcterms:identifier "kg-predict" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:kg-predict.ad_nct_evidence, kgr:kg-predict.ad_predictions, kgr:kg-predict.code, kgr:kg-predict.gpkg, kgr:kg-predict.raw_data ; schema1:name "KG-Predict" ; skos:altLabel "GP-KG", "GPKG-Predict" ; skos:inScheme "biomedical", "drug discovery", "drug repositioning", "genomics", "pharmacology", "phenotype", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:kg4sl a schema1:KnowledgeGraph ; rdfs:label "KG4SL" ; dcterms:created "2026-04-06T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "KG4SL is a knowledge-graph neural network project for predicting synthetic lethal gene pairs in human cancers. It is released with SynLethKG, the supporting knowledge graph used for model training and evaluation." ; dcterms:identifier "kg4sl" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:kg4sl.code, kgr:kg4sl.synlethkg ; schema1:name "KG4SL" ; doap:repository ; skos:inScheme "biomedical", "cancer", "drug discovery", "genomics", "information technology", "machine learning" ; adms:status "Active" ; foaf:homepage . kgr:kgcl a schema1:DataModel ; rdfs:label "Knowledge Graph Change Language" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A data model for describing change operations at a high level on an ontology or ontology-like artefact, such as a Knowledge Graph. KGCL enables standardized representation of changes in ontologies and knowledge graphs for tracking, auditing, and reproducibility. It provides a formal language for representing and documenting changes in knowledge graphs, facilitating version control, change history, and collaboration." ; dcterms:hasVersion "0.7.0" ; dcterms:identifier "kgcl" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:kgcl.kg-bioportal, kgr:kgcl.model.jsonld, kgr:kgcl.model.owl, kgr:kgcl.model.shacl, kgr:kgcl.model.yaml, kgr:kgcl.python ; schema1:name "Knowledge Graph Change Language" ; doap:repository ; skos:inScheme "information technology" ; adms:status "Active" ; foaf:homepage . kgr:kidsfirst a schema1:DataSource ; rdfs:label "Kids First Data Resource Center" ; dcterms:created "2025-06-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Gabriella Miller Kids First Pediatric Research Program Data Resource Center (Kids First DRC) provides researchers access to genomic and clinical data from pediatric cancer and structural birth defect cohorts to accelerate discovery and development of more effective treatments." ; dcterms:identifier "kidsfirst" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:kidsfirst.cavatica, kgr:kidsfirst.pedcbioportal, kgr:kidsfirst.portal, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:name "Kids First Data Resource Center" ; doap:repository ; skos:inScheme "biomedical", "cancer", "clinical", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:kinace a schema1:Aggregator ; rdfs:label "KiNet" ; dcterms:created "2025-11-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "KiNet is a web portal and dataset, originally deposited as KinAce, for aggregating and visualizing kinase-substrate interactions in the human genome. KiNet integrates interaction data from PhosphoSitePlus, iPTMnet, and EPSD with kinase group, protein, gene, pathway, and domain annotations from KinHub, CORAL, the Dark Kinase Knowledgebase, UniProt, HGNC, KEGG, and InterPro." ; dcterms:identifier "kinace" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:kinace.code, kgr:kinace.github_archive, kgr:kinace.interactions, kgr:kinace.portal, kgr:kinace.zenodo_archive ; schema1:identifier "kinace" ; schema1:name "KiNet" ; doap:repository ; skos:altLabel "KiNet", "KinAce" ; skos:inScheme "post-translational modification", "proteomics", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:kinhub a schema1:DataSource ; rdfs:label "KinHub" ; dcterms:created "2025-11-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A comprehensive resource for human protein kinases featuring KinMap, an interactive web-based tool for visualizing and annotating the human kinome tree, integrating biochemical, structural, and disease association data with a unified naming scheme" ; dcterms:identifier "kinhub" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:kinace.portal, kgr:kinhub.kinases-list, kgr:kinhub.kinmap, kgr:kinhub.portal ; schema1:name "KinHub" ; skos:altLabel "Human Kinase Hub", "Human Protein Kinases Hub" ; skos:inScheme "genomics", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:kinomescan a schema1:DataSource ; rdfs:label "KINOMEscan" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "KINOMEscan is a biochemical kinase profiling assay that measures drug binding using a panel of approximately 440 purified kinases. The HMS LINCS Project provides a comprehensive table of all small molecules in the HMS LINCS collection that have been profiled by KINOMEscan, with links to raw binding data." ; dcterms:identifier "kinomescan" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:kinomescan.portal, kgr:kinomescan.spreadsheet, kgr:molepro.api, kgr:molepro.catalog, kgr:molepro.graph.edges, kgr:molepro.graph.nodes, kgr:molepro.trapi ; schema1:identifier "kinomescan" ; schema1:name "KINOMEscan" ; skos:altLabel "HMS LINCS KINOMEscan" ; skos:inScheme "biomedical", "drug discovery", "high-throughput screening", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:kisao a schema1:Ontology ; rdfs:label "Kinetic Simulation Algorithm Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A classification of algorithms for simulating biology, their parameters, and their outputs" ; dcterms:identifier "kisao" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:kisao.owl ; schema1:name "Kinetic Simulation Algorithm Ontology" ; doap:repository ; skos:inScheme "information technology", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:klocd a schema1:KnowledgeGraph ; rdfs:label "Knowledge Graph & Large Language Model-Enhanced Organ on a Chip Database" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Knowledge Graph & Large Language Model-Enhanced Organ on a Chip Database (KLOCD) is a web platform for organ-on-a-chip research, drug discovery and toxicology from Professor Zhongze Gu's team at Southeast University (Nanjing, China). It consolidates data from public sources into sub-databases of drugs, chemicals, gene expression datasets, diseases, toxicants, literature, patents and organ-on-chip models. At its core is OCKG, an organ-on-chip knowledge graph linking organ chips, diseases, genes and compounds, which supports a drug repurposing tool and a retrieval-augmented natural language question answering assistant. KLOCD succeeds the Organ-on-a-Chip Database (Ocdb) previously served at the same address." ; dcterms:identifier "klocd" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:klocd.drug-repurposing, kgr:klocd.ockg, kgr:klocd.portal, kgr:klocd.qa-assistant ; schema1:name "Knowledge Graph & Large Language Model-Enhanced Organ on a Chip Database" ; skos:altLabel "KLOCD", "Ocdb", "Organ-on-a-Chip Database" ; skos:inScheme "biomedical", "drug discovery", "drug repositioning", "information technology", "machine learning", "toxicology" ; adms:status "Active" ; foaf:homepage . kgr:knowwheregraph a schema1:KnowledgeGraph ; rdfs:label "KnowWhereGraph" ; dcterms:created "2025-12-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "KnowWhereGraph is a large-scale geospatial and environmental knowledge graph containing over 29 billion RDF triples. It fuses knowledge graph technology with geo-enrichment capabilities to provide location-centric answers about environmental and human systems globally. The graph integrates 30+ data layers spanning natural hazards, climate, soil properties, demographics, health, agriculture, and more." ; dcterms:identifier "knowwheregraph" ; dcterms:isReferencedBy , , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:knowwheregraph.explorer, kgr:knowwheregraph.graph, kgr:knowwheregraph.ontology, kgr:knowwheregraph.sparql, kgr:sawgraph.graph, kgr:spatialkg.graph ; schema1:identifier "knowwheregraph" ; schema1:name "KnowWhereGraph" ; doap:repository ; skos:inScheme "environment", "geographic information systems", "public health" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ucsb-geography . kgr:labeledin a schema1:DataSource ; rdfs:label "LabeledIn" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "LabeledIn is a human-reviewed, machine-readable, source-linked catalog of labeled indications for human drugs derived from FDA drug labels made available through DailyMed." ; dcterms:identifier "labeledin" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-06-03T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:labeledin.indications, kgr:labeledin.publication, kgr:pharmacotherapydb.indications ; schema1:name "LabeledIn" ; skos:inScheme "biomedical", "clinical", "pharmacology" ; adms:status "Inactive" ; foaf:homepage . kgr:labo a schema1:Ontology ; rdfs:label "clinical LABoratory Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "LABO is an ontology of informational entities formalizing clinical laboratory tests prescriptions and reporting documents." ; dcterms:identifier "labo" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:labo.kg-bioportal, kgr:labo.owl ; schema1:name "clinical LABoratory Ontology" ; doap:repository ; skos:inScheme "biomedical", "clinical", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:lepao a schema1:Ontology ; rdfs:label "Lepidoptera Anatomy Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Lepidoptera Anatomy Ontology contains terms used for describing the anatomy and phenotype of moths and butterflies in biodiversity research. LEPAO is developed in part by BIOfid (The Specialised Information Service Biodiversity Research)." ; dcterms:identifier "lepao" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:lepao.kg-bioportal, kgr:lepao.obo, kgr:lepao.owl ; schema1:name "Lepidoptera Anatomy Ontology" ; doap:repository ; skos:inScheme "anatomy and development", "insects", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:lincs a schema1:DataSource ; rdfs:label "LINCS" ; dcterms:created "2025-05-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Library of Integrated Network-based Cellular Signatures (LINCS) is a comprehensive collection of data that catalogs how human cells globally respond to chemical, genetic, and disease perturbations. It aims to better understand human disease and advance the development of new therapies by assembling an integrated picture of the range of responses of human cells exposed to many perturbations." ; dcterms:identifier "lincs" ; dcterms:isReferencedBy , , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:bioteque.embeddings, kgr:cfde-gse.genesets, kgr:cfde-gse.graph, kgr:cmap.clue, kgr:cmap.connectopedia, kgr:cmap.data_downloads, kgr:cmap.python_api, kgr:cmap.query_app, kgr:digcfdekg.graph, kgr:enrichr-kg.graph, kgr:lincs.api, kgr:lincs.portal, kgr:nde.graph, kgr:omicsdi.api, kgr:omicsdi.portal, kgr:petagraph.graph, kgr:prokn.lincs.compound.in_similarity_relationship_with.compound.edges, kgr:prokn.lincs.compound.negatively_regulates.gene.edges, kgr:prokn.lincs.compound.positively_regulates.gene.edges, kgr:prokn.lincs_p100.experiment.perturbation_effect.ptmsite.edges, kgr:prokn.lincs_p100.perturbagen.is_used_in.experiment.edges, kgr:prokn.lincs_p100.ptmsite.is_site.site.edges, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:identifier "lincs" ; schema1:name "LINCS" ; skos:inScheme "biomedical", "drug discovery", "genomics", "high-throughput screening", "precision medicine", "proteomics", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:lincs-l1000 a schema1:DataSource ; rdfs:label "LINCS L1000" ; dcterms:created "2025-01-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The LINCS L1000 is a high-throughput, reduced representation gene expression profiling assay developed as part of the NIH Library of Integrated Network-Based Cellular Signatures (LINCS) Program. L1000 directly measures 978 landmark genes and computationally infers the expression of 11,350 additional genes, enabling cost-effective large-scale transcriptional profiling at approximately $2 per sample. The technology was developed to create a Connectivity Map (CMap) that catalogs cellular responses to genetic and chemical perturbations, facilitating drug discovery, mechanism of action determination, and functional annotation of genetic variants. The LINCS L1000 dataset comprises over 1.3 million gene expression profiles representing responses to 19,811 chemical compounds, genetic perturbations targeting 5,075 genes (via shRNA knockdowns and cDNA overexpression), and 314 biologics across multiple cell lines and time points." ; dcterms:identifier "lincs-l1000" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:alzkb.browser, kgr:alzkb.data, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:lincs-l1000.clue, kgr:lincs-l1000.cmap, kgr:lincs-l1000.geo, kgr:spoke-okn.graph, kgr:spoke.graph ; schema1:name "LINCS L1000" ; doap:repository ; skos:inScheme "drug discovery", "gene expression profiling", "genomics", "high-throughput screening" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:broad . kgr:lipidmaps a schema1:DataSource ; rdfs:label "LIPID MAPS" ; dcterms:created "2026-06-15T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "LIPID MAPS is the LIPID MAPS Lipidomics Gateway, a community resource for lipid structures, classification, and nomenclature. It provides the LIPID MAPS Structure Database (LMSD), a curated database of biologically relevant lipid structures, along with a standardized lipid classification and nomenclature system and a suite of tools and databases for the lipidomics community. Data and resources are accessible through a web gateway, bulk downloads, and a REST API." ; dcterms:identifier "lipidmaps" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:lipidmaps.api, kgr:lipidmaps.docs, kgr:lipidmaps.gateway, kgr:lipidmaps.lmsd, kgr:pubchem.substances.asn, kgr:pubchem.substances.sdf ; schema1:name "LIPID MAPS" ; doap:repository ; skos:inScheme "chemistry and biochemistry", "metabolomics", "nutrition" ; adms:status "Active" ; foaf:homepage . kgr:lipro a schema1:Ontology ; rdfs:label "Lipid Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology representation of the LIPIDMAPS nomenclature classification." ; dcterms:identifier "lipro" ; dcterms:isReferencedBy ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:lipro.kg-bioportal, kgr:lipro.owl ; schema1:name "Lipid Ontology" ; skos:inScheme "chemistry and biochemistry" ; adms:status "Inactive" ; foaf:homepage . kgr:litvar a schema1:DataSource ; rdfs:label "LitVar" ; dcterms:created "2025-11-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "LitVar is a comprehensive NCBI web service for searching and retrieving variant-specific information from the biomedical literature using advanced text mining and machine learning techniques. Developed by the National Library of Medicine's Computational Biology Branch, LitVar automatically extracts variant-related information from over 35 million PubMed articles and 5.7 million full-text articles in PubMed Central including supplementary materials, with monthly updates to capture the latest research. A key innovation of LitVar is its sophisticated variant normalization system that standardizes different forms of the same variant into unique identifiers, enabling comprehensive search results regardless of which variant nomenclature is used in the query, whether protein level names, DNA level annotations, dbSNP RS identifiers, ClinGen identifiers, or SPDI format. LitVar leverages PubTator, a state-of-the-art literature annotation tool, to identify and display key biological entities including genes, diseases, drugs, chemicals, and mutations within retrieved articles, providing rich contextual information around variants of interest." ; dcterms:identifier "litvar" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:litvar.api, kgr:litvar.api_documentation, kgr:litvar.web_interface, kgr:service-kp.trapi ; schema1:identifier "litvar" ; schema1:name "LitVar" ; skos:inScheme "genetic variation", "genomics", "literature", "natural language processing" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ncbi . kgr:lmha a schema1:Ontology ; rdfs:label "LungMAP Human Anatomy Ontology" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The LungMAP Human Anatomy (LMHA) ontology is a controlled vocabulary of human lung anatomy developed by the NHLBI Molecular Atlas of Lung Development Program (LungMAP) consortium. It provides structured terms and relationships covering anatomical structures and cell types of the developing (fetal and postnatal) and adult human lung, organized for use in lung development research and tissue annotation. LMHA is used by the Human Reference Atlas (HRA) to link lung cell-type terms in its ASCT+B tables and is integrated as an upstream vocabulary in the HRA Knowledge Graph (HRA-KG). The ontology was authored by the LungMAP Ontology Subcommittee and is distributed in OWL/RDF." ; dcterms:identifier "lmha" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:hra-kg.graph.json, kgr:hra-kg.graph.nq, kgr:hra-kg.graph.nt, kgr:hra-kg.graph.ttl, kgr:hra-kg.graph.xml, kgr:lmha.browser, kgr:lmha.graph.ttl, kgr:lmha.graph.xml, kgr:lmha.source.owl ; schema1:name "LungMAP Human Anatomy Ontology" ; skos:inScheme "anatomy and development", "biomedical" ; adms:status "Active" ; foaf:homepage . kgr:lncbase a schema1:DataSource ; rdfs:label "DIANA-LncBase" ; dcterms:created "2025-09-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "DIANA-LncBase is a comprehensive repository of experimentally supported miRNA-lncRNA interactions. Version 3.0 contains ~500,000 entries corresponding to ~240,000 unique tissue and cell type specific miRNA-lncRNA pairs in human and mouse. Data derived from manual curation and analysis of >300 high-throughput datasets including AGO-CLIP-Seq, microarrays, and low-yield experiments across 192 cell types and 51 tissues. Includes lncRNA expression profiles and subcellular localization data." ; dcterms:identifier "lncbase" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , ; schema1:hasPart kgr:genecards.web.interface, kgr:lncbase.correlation-viz, kgr:lncbase.expression-viz, kgr:lncbase.portal, kgr:lncbase.ucsc-browser, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db ; schema1:name "DIANA-LncBase" ; skos:altLabel "DIANA LncBase", "LncBase" ; skos:inScheme "genomics", "non-coding RNA" ; adms:status "Active" ; foaf:homepage . kgr:lncbook a schema1:DataSource ; rdfs:label "LncBook" ; dcterms:created "2019-01-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "LncBook is a comprehensive database of human long non-coding RNAs (lncRNAs) with multi-omics annotations. It accommodates 95,243 lncRNA genes and 323,950 transcripts, integrated from multiple resources including GENCODE, RefLnc, CHESS, FANTOM-CAT, and BIGTranscriptome, with strict quality control and curation. The database provides abundant annotations including conservation features across 40 vertebrates, disease/trait-associated variants, DNA methylation profiles, expression profiles across 9 biological contexts, lncRNA-encoded small proteins, lncRNA-protein interactions, and lncRNA-miRNA interactions." ; dcterms:identifier "lncbook" ; dcterms:isReferencedBy , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:genecards.web.interface, kgr:lncbook.blast, kgr:lncbook.classification, kgr:lncbook.conservation, kgr:lncbook.conversion, kgr:lncbook.downloads, kgr:lncbook.expression, kgr:lncbook.interaction, kgr:lncbook.lgc, kgr:lncbook.methylation, kgr:lncbook.portal, kgr:lncbook.sprotein, kgr:lncbook.statistics, kgr:lncbook.variation, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db ; schema1:name "LncBook" ; skos:inScheme "genomics", "non-coding RNA" ; adms:status "Active" ; foaf:homepage . kgr:lncipedia a schema1:DataSource ; rdfs:label "LncIPedia" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "LncIPedia is a comprehensive public database for human long non-coding RNA (lncRNA) sequences and annotations, containing manually curated literature and detailed transcript information." ; dcterms:identifier "lncipedia" ; dcterms:isReferencedBy , , ; dcterms:license "Non-Commercial Use Only" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:genecards.web.interface, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db ; schema1:name "LncIPedia" ; skos:inScheme "genomics", "literature", "non-coding RNA" ; adms:status "Inactive" ; foaf:homepage . kgr:lncrnadb a schema1:DataSource ; rdfs:label "lncRNAdb" ; dcterms:created "2010-11-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A reference database for long noncoding RNAs (lncRNAs) that have been shown to have, or be associated with, biological functions in eukaryotes. Contained over 150 lncRNAs from around 60 different species with comprehensive annotations including sequences, structural information, genomic context, expression, subcellular localization, conservation, and functional evidence." ; dcterms:identifier "lncrnadb" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:lncrnadb.export, kgr:lncrnadb.nred-integration, kgr:lncrnadb.portal, kgr:lncrnadb.search, kgr:lncrnadb.submit, kgr:lncrnadb.ucsc-integration, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db ; schema1:name "lncRNAdb" ; skos:inScheme "genomics", "non-coding RNA" ; adms:status "Inactive" ; foaf:homepage . kgr:lncrnadisease a schema1:DataSource ; rdfs:label "LncRNADisease" ; dcterms:created "2026-06-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "LncRNADisease is a database of experimentally supported and predicted long non-coding RNA (lncRNA) and disease associations. It also curates lncRNA interactions at various molecular levels, including with proteins, RNA, miRNA, and DNA, to support studies of lncRNA function in disease." ; dcterms:identifier "lncrnadisease" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:genecards.web.interface, kgr:lncrnadisease.site ; schema1:name "LncRNADisease" ; skos:inScheme "clinical", "genomics", "non-coding RNA" ; adms:status "Active" ; foaf:homepage . kgr:lncrnalyzr a schema1:KnowledgeGraph ; rdfs:label "lncRNAlyzr" ; dcterms:created "2025-09-23T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "lncRNAlyzr is a specialized knowledge graph focused on long non-coding RNA (lncRNA) biology, integrating lncRNA annotations, expression profiles, functional interactions, disease associations, and regulatory mechanisms to provide comprehensive insights into lncRNA roles in cellular processes and human disease." ; dcterms:identifier "lncrnalyzr" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:lncrnalyzr.api, kgr:lncrnalyzr.graph, kgr:lncrnalyzr.portal ; schema1:name "lncRNAlyzr" ; doap:repository ; skos:inScheme "biomedical", "genomics", "non-coding RNA", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:loggerhead a schema1:Ontology ; rdfs:label "Loggerhead nesting" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Description unavailable." ; dcterms:identifier "loggerhead" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:name "Loggerhead nesting" ; skos:inScheme "organisms" ; adms:status "Inactive" ; foaf:homepage . kgr:loinc a schema1:DataModel ; rdfs:label "LOINC" ; dcterms:created "2025-06-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "LOINC (Logical Observation Identifiers Names and Codes) is the international standard for identifying health measurements, laboratory and clinical observations, and documents; it provides universal codes and structured names enabling interoperable exchange and aggregation of clinical, laboratory, and other health data worldwide." ; dcterms:identifier "loinc" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:athena.mappings, kgr:athena.vocabularies, kgr:imo-knowledge-graph.data, kgr:loinc.api.fhir, kgr:loinc.archive, kgr:loinc.complete, kgr:loinc.principles, kgr:loinc.web, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:identifier "loinc" ; schema1:name "LOINC" ; skos:inScheme "biomedical", "clinical", "clinical coding", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:lotus a schema1:DataSource ; rdfs:label "LOTUS (naturaL prOducTs occUrrence databaSe)" ; dcterms:created "2026-07-01T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "LOTUS (naturaL prOducTs occUrrence databaSe) is an open knowledge base of referenced structure-organism pairs for natural products research. It harmonizes, curates, and validates hundreds of thousands of documented natural product occurrences, linking chemical structures to the organisms in which they were reported together with the supporting literature references. LOTUS data are disseminated openly and are hosted on Wikidata, mirrored at lotus.naturalproducts.net, and released as frozen tabular snapshots on Zenodo." ; dcterms:identifier "lotus" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:kg-enp.graph, kgr:lotus.dataset, kgr:lotus.portal ; schema1:name "LOTUS (naturaL prOducTs occUrrence databaSe)" ; skos:altLabel "LNPN", "LOTUS", "LOTUS Natural Products Online", "naturaL prOducTs occUrrence databaSe" ; skos:inScheme "chemistry and biochemistry", "natural products" ; adms:status "Active" ; foaf:homepage . kgr:louisiana-tumor-registry a schema1:DataSource ; rdfs:label "Louisiana Tumor Registry" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Louisiana Tumor Registry (LTR) is Louisiana's statewide, population-based cancer incidence registry, housed in the School of Public Health at LSU Health Sciences Center New Orleans. It collects, manages, and reports data on all newly diagnosed cancer cases among Louisiana residents and participates in both the NCI Surveillance, Epidemiology, and End Results (SEER) Program and the CDC National Program of Cancer Registries (NPCR). LTR data support cancer surveillance, research, and public health planning, and serve as the primary data source for the Cancer Registry KG (the .ltr graph)." ; dcterms:identifier "louisiana-tumor-registry" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cancer-registry-kg.ltr, kgr:louisiana-tumor-registry.data-request ; schema1:name "Louisiana Tumor Registry" ; skos:inScheme "biomedical", "cancer", "clinical", "disease registries", "public health" ; adms:status "Active" ; foaf:homepage . kgr:lsdb-archive a schema1:Aggregator ; rdfs:label "Life Science Database Archive" ; dcterms:created "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Life Science Database Archive (LSDB Archive) is run by the National Bioscience Database Center (NBDC) of the Japan Science and Technology Agency. It preserves datasets from Japanese life science databases for the long term and distributes each one as a whole-database download, with database-level and data-item-level metadata in a common format, a DOI per archived database (prefix 10.18908/lsdba), and a license stated per database. About 90 databases are archived, including FANTOM5, ChIP-Atlas, KEGG MEDICUS, INOH, Open TG-GATEs, BodyParts3D and the NBDC Nikkaji RDF. Creative Commons licenses are the standard, but the version differs by database (for example CC BY 4.0, CC BY-SA 4.0 or CC BY-SA 2.1 Japan)." ; dcterms:identifier "lsdb-archive" ; dcterms:license ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:lsdb-archive.about, kgr:lsdb-archive.data-list, kgr:lsdb-archive.database-catalog-csv, kgr:lsdb-archive.database-catalog-json, kgr:lsdb-archive.downloads, kgr:lsdb-archive.fantom5, kgr:lsdb-archive.inoh, kgr:lsdb-archive.kegg-medicus, kgr:lsdb-archive.metadata-dump, kgr:lsdb-archive.portal, kgr:lsdb-archive.terms ; schema1:name "Life Science Database Archive" ; skos:altLabel "LSDB Archive", "NBDC Life Science Database Archive" ; skos:inScheme "biomedical", "genomics", "information technology", "metadata", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:m-csa a schema1:DataSource ; rdfs:label "M-CSA" ; dcterms:created "2025-03-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Mechanism and Catalytic Site Atlas (M-CSA) is a database of enzyme reaction mechanisms. It provides annotation on the protein, catalytic residues, cofactors, and the reaction mechanisms of hundreds of enzymes. There are two kinds of entries in M-CSA. 'Detailed mechanism' entries are more complete and show the individual chemical steps of the mechanism as schemes with electron flow arrows. 'Catalytic Site' entries annotate the catalytic residues necessary for the reaction, but do not show the mechanism." ; dcterms:identifier "m-csa" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:m-csa.download, kgr:m-csa.portal, kgr:obo-db-ingest.rhea.sssom.tsv ; schema1:name "M-CSA" ; skos:inScheme "chemistry and biochemistry", "enzymes" ; adms:status "Active" ; foaf:homepage . kgr:ma a schema1:Ontology ; rdfs:label "Mouse adult gross anatomy" ; dcterms:created "2025-06-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A structured controlled vocabulary of the adult anatomy of the mouse (Mus)." ; dcterms:identifier "ma" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:efo.obo, kgr:efo.owl, kgr:ma.kg-bioportal, kgr:ma.obo, kgr:ma.owl ; schema1:name "Mouse adult gross anatomy" ; doap:repository ; skos:inScheme "anatomy and development" ; adms:status "Active" ; foaf:homepage . kgr:maine-egad a schema1:DataSource ; rdfs:label "Maine EGAD (Environmental and Geographic Analysis Database)" ; dcterms:created "2026-07-01T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Environmental and Geographic Analysis Database (EGAD) is the Maine Department of Environmental Protection's database of environmental sampling and monitoring data. It stores site and water quality information for potential and actual sources of contamination, including physical, chemical, biological, and spatial data for surface water, groundwater, and biological sampling sites across Maine. EGAD includes per- and polyfluoroalkyl substance (PFAS) sampling results. SAWGraph uses EGAD as a primary source for state-level PFAS occurrence data in Maine." ; dcterms:identifier "maine-egad" ; dcterms:license "Maine state government public records" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:maine-egad.landing, kgr:maine-egad.samples, kgr:sawgraph.graph ; schema1:name "Maine EGAD (Environmental and Geographic Analysis Database)" ; skos:inScheme "chemistry and biochemistry", "environment", "public health", "water resources" ; adms:status "Active" ; foaf:homepage . kgr:maizegdb a schema1:DataSource ; rdfs:label "MaizeGDB" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "MaizeGDB is the community database for maize (Zea mays) genetics and genomics, maintained by the USDA-ARS. It integrates genome assemblies and gene models for B73 and an expanding set of maize and related Andropogoneae lines, along with gene function and expression data, genetic and physical maps, phenotypes, stocks, metabolic pathways, and curated literature. The resource provides genome browsers, a MaizeMine data-mining interface, and bulk downloads of sequence and annotation files, and serves as the upstream data source for eco-KG." ; dcterms:identifier "maizegdb" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:eco-kg.graph, kgr:maizegdb.downloads, kgr:maizegdb.gene_model_gff, kgr:maizegdb.maizemine ; schema1:name "MaizeGDB" ; skos:inScheme "agriculture", "genomics", "organisms", "plants" ; adms:status "Active" ; foaf:homepage . kgr:malacards a schema1:Aggregator ; rdfs:label "MalaCards" ; dcterms:created "2025-09-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "MalaCards is a comprehensive, searchable database integrating information about human diseases from 78 data sources. It provides integrated disease annotations including genes, symptoms, drugs, mutations, publications, clinical trials, and pathways for over 22,000 human disorders." ; dcterms:identifier "malacards" ; dcterms:isReferencedBy , ; dcterms:modified "2026-09-01T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:genecards.disease.associations, kgr:genecards.web.interface, kgr:malacards.archive, kgr:malacards.categories, kgr:malacards.portal, kgr:malacards.search, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db ; schema1:name "MalaCards" ; skos:inScheme "biomedical", "clinical", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:mamo a schema1:Ontology ; rdfs:label "Mathematical modeling ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features." ; dcterms:identifier "mamo" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:mamo.kg-bioportal, kgr:mamo.owl ; schema1:name "Mathematical modeling ontology" ; doap:repository ; skos:inScheme "information technology", "systems biology" ; adms:status "Orphaned" ; foaf:homepage . kgr:mangal a schema1:KnowledgeGraph ; rdfs:label "mangal.io" ; dcterms:created "2025-12-15T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "mangal.io is a collaborative database and analysis platform for ecological networks, providing a comprehensive collection of species interaction networks (food webs, pollination networks, plant-herbivore networks) with tools for visualization, analysis, and reuse of published ecological data." ; dcterms:identifier "mangal" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , ; schema1:hasPart kgr:mangal.api, kgr:mangal.docs, kgr:mangal.portal, kgr:mangal.rmangal ; schema1:name "mangal.io" ; skos:inScheme "ecology", "environment" ; adms:status "Active" ; foaf:homepage . kgr:mao a schema1:Ontology ; rdfs:label "Multiple alignment" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Description unavailable." ; dcterms:identifier "mao" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:name "Multiple alignment" ; skos:inScheme "chemistry and biochemistry", "genomics" ; adms:status "Inactive" ; foaf:homepage . kgr:markerdb a schema1:DataSource ; rdfs:label "MarkerDB" ; dcterms:created "2026-05-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "MarkerDB 2.0 is a freely available molecular biomarker database that consolidates clinical and selected pre-clinical biomarkers across protein, chemical, genetic, karyotype, diagnostic, prognostic, monitoring, safety, response, exposure, and risk categories." ; dcterms:identifier "markerdb" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-07-01T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:markerdb.api, kgr:markerdb.chemicals.tsv, kgr:markerdb.downloads, kgr:markerdb.karyotypes.tsv, kgr:markerdb.proteins.tsv, kgr:markerdb.sequence_variants.tsv, kgr:markerdb.web, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv ; schema1:name "MarkerDB" ; skos:inScheme "biomedical", "clinical" ; adms:status "Active" ; foaf:homepage . kgr:massive a schema1:DataSource ; rdfs:label "MassIVE" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "MassIVE is a community mass spectrometry data repository developed by the NIH-funded UC San Diego Center for Computational Mass Spectrometry to support global, free exchange, browsing, redistribution, reanalysis, and publication-linked sharing of mass spectrometry datasets." ; dcterms:identifier "massive" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:massive.docs, kgr:massive.portal, kgr:metabokg.graph, kgr:metabokg.rml_mappings, kgr:nde.graph, kgr:omicsdi.api, kgr:omicsdi.portal, kgr:proteomexchange.dataset-list, kgr:proteomexchange.dataset-records, kgr:proteomexchange.proteomecentral, kgr:redu.dashboard ; schema1:name "MassIVE" ; skos:altLabel "Mass Spectrometry Interactive Virtual Environment", "MassIVE" ; skos:inScheme "chemistry and biochemistry", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:mat a schema1:Ontology ; rdfs:label "Minimal anatomical terminology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Description unavailable." ; dcterms:identifier "mat" ; dcterms:modified "2026-09-08T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:mat.kg-bioportal ; schema1:name "Minimal anatomical terminology" ; skos:inScheme "anatomy and development" ; adms:status "Inactive" ; foaf:homepage . kgr:matador a schema1:DataSource ; rdfs:label "MATADOR" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "MATADOR (Manually Annotated Targets and Drugs Online Resource) is a manually curated database of drug-target relationships developed at EMBL. Unlike resources limited to direct binding, MATADOR captures both direct (binding) and indirect (e.g., metabolic or signaling) drug-target interactions for proteins and small molecules. It was distributed alongside SuperTarget and serves as an upstream source for downstream knowledge graphs such as PharmDB." ; dcterms:identifier "matador" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-08T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:matador.publication, kgr:pharmdb.graph, kgr:stitch.api, kgr:stitch.downloads, kgr:stitch.portal ; schema1:name "MATADOR" ; skos:inScheme "chemistry and biochemistry", "drug discovery", "pharmacology" ; adms:status "Inactive" ; foaf:homepage . kgr:maude a schema1:DataSource ; rdfs:label "MAUDE (Manufacturer and User Facility Device Experience)" ; dcterms:created "2026-07-01T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The U.S. FDA database of medical device adverse event reports. It houses mandatory reports submitted by device manufacturers, importers, and device user facilities, along with voluntary reports from healthcare professionals, patients, and consumers. The data are searchable through a public web interface and are also released as downloadable data files and via an API." ; dcterms:identifier "maude" ; dcterms:license ; dcterms:modified "2026-10-03T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:maude.data, kgr:maudekg.graph, kgr:openfda.apis, kgr:openfda.downloads ; schema1:name "MAUDE (Manufacturer and User Facility Device Experience)" ; skos:inScheme "biomedical", "clinical", "pharmacology", "pharmacovigilance" ; adms:status "Active" ; foaf:homepage . kgr:maudekg a schema1:KnowledgeGraph ; rdfs:label "FDA MAUDE Adverse Event Knowledge Graph" ; dcterms:created "2026-03-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Knowledge graph constructed from FDA MAUDE adverse event reports using standardized FDA product codes." ; dcterms:identifier "maudekg" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:maudekg.graph, kgr:maudekg.sparql, kgr:maudekg.tpf ; schema1:name "FDA MAUDE Adverse Event Knowledge Graph" ; skos:inScheme "biomedical", "clinical", "pharmacology", "pharmacovigilance" ; adms:status "Active" ; foaf:homepage . kgr:maven-central a schema1:DataSource ; rdfs:label "Maven Central Repository" ; dcterms:created "2026-07-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Maven Central is the default public repository for the Java and JVM ecosystem, hosting metadata and distributable artifacts for Maven-compatible packages." ; dcterms:identifier "maven-central" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:maven-central.website, kgr:securechainkg.graph ; schema1:name "Maven Central Repository" ; skos:inScheme "information technology", "software" ; adms:status "Active" ; foaf:homepage . kgr:maxo a schema1:Ontology ; rdfs:label "Medical Action Ontology" ; dcterms:created "2025-08-13T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Medical Action Ontology (MAxO) provides a broad view of medical actions and includes terms for medical procedures, interventions, therapies, treatments, and recommendations." ; dcterms:identifier "maxo" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:kg-monarch.graph, kgr:kg-monarch.graph.duckdb, kgr:kg-monarch.graph.jsonl, kgr:kg-monarch.graph.jsonl.edges, kgr:kg-monarch.graph.jsonl.nodes, kgr:kg-monarch.graph.neo4j, kgr:kg-monarch.graph.neo4j.edges, kgr:kg-monarch.graph.neo4j.nodes, kgr:kg-monarch.graph.rdf, kgr:maxo.json, kgr:maxo.maxo-base.json, kgr:maxo.maxo-base.obo, kgr:maxo.maxo-base.owl, kgr:maxo.obo, kgr:maxo.owl, kgr:sri-reference-kg.graph ; schema1:identifier "maxo" ; schema1:name "Medical Action Ontology" ; doap:repository ; skos:inScheme "biomedical", "clinical" ; adms:status "Active" ; foaf:homepage . kgr:mbodymap a schema1:DataSource ; rdfs:label "mBodyMap" ; dcterms:created "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "mBodyMap is a curated database of microbes across the human body and their associations with health and diseases. It re-annotates the microbial contents of public metagenomic and amplicon samples with a common pipeline and manually curates the metadata of the human hosts, then organizes samples by body site and by disease so that datasets can be integrated and compared. At publication (2022) it held 63,148 runs, 14,401 metagenomes and 48,747 amplicons, from 136 projects across 22 body sites and 56 diseases, with precomputed abundance and prevalence for 6,247 species in 1,645 genera stratified by body site and disease." ; dcterms:identifier "mbodymap" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:mbodymap.site, kgr:micromap.api ; schema1:name "mBodyMap" ; skos:inScheme "biomedical", "microbiology", "microbiome" ; adms:status "Active" ; foaf:homepage . kgr:mco a schema1:Ontology ; rdfs:label "Microbial Conditions Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Microbial Conditions Ontology is an ontology..." ; dcterms:identifier "mco" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:mco.kg-bioportal, kgr:mco.obo, kgr:mco.owl ; schema1:name "Microbial Conditions Ontology" ; doap:repository ; skos:inScheme "biomedical", "general", "microbiology" ; adms:status "Active" ; foaf:homepage . kgr:mcro a schema1:Ontology ; rdfs:label "Model Card Report Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology representing the structure of model card reports - reports that describe basic characteristics of machine learning models for the public and consumers." ; dcterms:identifier "mcro" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:mcro.kg-bioportal, kgr:mcro.owl ; schema1:name "Model Card Report Ontology" ; doap:repository ; skos:inScheme "biomedical", "information technology", "machine learning" ; adms:status "Active" ; foaf:homepage . kgr:mechreponet a schema1:KnowledgeGraph ; rdfs:label "MechRepoNet" ; dcterms:created "2022-04-12T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "MechRepoNet (Mechanistic Repositioning Network) is a knowledge graph that integrates multiple biomedical data sources to support drug repositioning via mechanistic inference." ; dcterms:identifier "mechreponet" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:mechreponet.code, kgr:mechreponet.kg, kgr:mind.entities, kgr:mind.relations, kgr:mind.test, kgr:mind.train, kgr:mind.valid ; schema1:name "MechRepoNet" ; doap:repository ; skos:inScheme "biomedical", "drug discovery", "drug repositioning", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:med-rt a schema1:DataSource ; rdfs:label "MED-RT" ; dcterms:created "2026-05-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "MED-RT is the Medication Reference Terminology, an NCI EVS medication terminology and successor to VHA NDF-RT that represents pharmacologic classifications and asserted medication relationships." ; dcterms:identifier "med-rt" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:med-rt.accessory_files, kgr:med-rt.core_dts, kgr:med-rt.core_spl, kgr:med-rt.core_xml, kgr:med-rt.documentation, kgr:med-rt.release, kgr:med-rt.release_notes, kgr:med-rt.terms, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv ; schema1:identifier "medrt-umls" ; schema1:name "MED-RT" ; skos:inScheme "biomedical", "clinical", "clinical coding", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:meddra a schema1:DataSource ; rdfs:label "MedDRA" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "MedDRA, the Medical Dictionary for Regulatory Activities, is an ICH standardized medical terminology used internationally for registration, documentation, safety monitoring, and pharmacovigilance of medical products." ; dcterms:identifier "meddra" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:babel.compendia, kgr:faers.quarterly_data_ascii, kgr:faers.quarterly_data_xml, kgr:meddra.ich-page, kgr:meddra.release-files, kgr:meddra.web-browser ; schema1:name "MedDRA" ; skos:altLabel "Medical Dictionary for Regulatory Activities" ; skos:inScheme "biomedical", "clinical", "clinical coding", "pharmacology", "pharmacovigilance" ; adms:status "Active" ; foaf:homepage . kgr:medgen a schema1:Aggregator ; rdfs:label "MedGen" ; dcterms:created "2025-07-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "NCBI's portal to information about conditions, phenotypes, and findings in humans related to medical genetics. Aggregates and organizes data from multiple authoritative sources including UMLS, OMIM, HPO, Mondo, Orphanet, GeneReviews, ClinPGx (formerly PharmGKB), and community submissions to GTR and ClinVar. Each concept is assigned a distinct Concept Unique Identifier (CUI) and integrated with related information from clinical resources, genetic testing registries, medical literature, and molecular resources." ; dcterms:identifier "medgen" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:babel.compendia, kgr:genecards.web.interface, kgr:gtr.test_condition_gene, kgr:gtr.xml, kgr:medgen.csv, kgr:medgen.cui-history, kgr:medgen.faq, kgr:medgen.help, kgr:medgen.hpo-history, kgr:medgen.hpo-mapping, kgr:medgen.hpo-omim-mapping, kgr:medgen.id-mappings, kgr:medgen.merged, kgr:medgen.mgconso, kgr:medgen.mgdef, kgr:medgen.mgrel, kgr:medgen.mgsat, kgr:medgen.mgsty, kgr:medgen.mondo-history, kgr:medgen.names, kgr:medgen.ordo-history, kgr:medgen.portal, kgr:medgen.presentations, kgr:medgen.pubmed-links, kgr:medgen.readme, kgr:medgen.search, kgr:medgen.sources, kgr:medgen.uid-cui-history, kgr:ncbigene.mim2gene_medgen, kgr:pheknowlator.graph, kgr:rdf-portal.graphql, kgr:rdf-portal.sparql.ncbi, kgr:unibiomap.auxs, kgr:unibiomap.links, kgr:unibiomap.pred, kgr:unibiomap.pred.full ; schema1:identifier "medgen" ; schema1:name "MedGen" ; skos:inScheme "biomedical", "clinical", "genomics" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ncbi . kgr:medi a schema1:DataSource ; rdfs:label "MeDI" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "MeDI/MEDI is a curated dataset of medicines, diseases, indications, and contraindications for drug repurposing. The original Every Cure MATRIX Indication List repository is archived, with active development continued in the medic repository, which provides indication lists, drug lists, and regulatory source extracts." ; dcterms:identifier "medi" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:medi.drug_list_flexible, kgr:medi.drug_list_stringent, kgr:medi.ema, kgr:medi.github, kgr:medi.legacy_github, kgr:medi.matrix_indication_list, kgr:medi.orangebook, kgr:medi.pmda, kgr:medi.release, kgr:pharmacotherapydb.indications ; schema1:identifier "medi" ; schema1:name "MeDI" ; doap:repository ; skos:inScheme "clinical", "drug discovery", "drug repositioning", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:mediadive a schema1:DataSource ; rdfs:label "MediaDive" ; dcterms:created "2025-11-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "MediaDive is the world's largest collection of microbial cultivation media, maintained by DSMZ (German Collection of Microorganisms and Cell Cultures). It provides comprehensive information about media compositions, solutions, ingredients, and growth conditions for over 47,000 microbial strains including bacteria, archaea, fungi, protists, and algae." ; dcterms:identifier "mediadive" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , ; schema1:hasPart kgr:kg-microbe.graph.biomedical, kgr:kg-microbe.graph.biomedical-function, kgr:kg-microbe.graph.core, kgr:kg-microbe.graph.function, kgr:kg-microbe.graph.raw, kgr:mediadive.portal, kgr:mediadive.rest_api, kgr:mediadive.sparql, kgr:rdf-portal.sparql.primary ; schema1:name "MediaDive" ; skos:altLabel "DSMZ MediaDive", "Media Diversity", "MediaDive" ; skos:inScheme "microbiology", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:medispan-gpi a schema1:DataSource ; rdfs:label "Medi-Span Generic Product Identifier" ; dcterms:created "2026-04-10T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Medi-Span Generic Product Identifier (GPI) is a proprietary 14-character concept and therapeutic classification system from Wolters Kluwer's Medi-Span suite. GPI is used to identify and hierarchically group drug products for medication reconciliation, clinical screening, formulary management, and interoperability workflows. It remains actively maintained as part of the commercial Medi-Span drug data ecosystem and is used in OMOP/Athena contexts as one of the source vocabularies incorporated into standardized vocabulary distributions." ; dcterms:identifier "medispan-gpi" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:athena.vocabularies, kgr:medispan-gpi.commercial_data, kgr:medispan-gpi.documentation, kgr:medispan-gpi.support ; schema1:name "Medi-Span Generic Product Identifier" ; skos:altLabel "GPI", "Generic Product Identifier", "Medi-Span GPI" ; skos:inScheme "biomedical", "clinical", "clinical coding", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:medkg a schema1:KnowledgeGraph ; rdfs:label "MedKG" ; dcterms:created "2025-03-24T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "MedKG is a comprehensive and continuously updated knowledge graph designed to address challenges in precision medicine and drug discovery. MedKG integrates data from 35 authoritative sources, encompassing 34 node types and 79 relationships. A Continuous Integration/Continuous Update pipeline ensures MedKG remains current, addressing a critical limitation of static knowledge bases. The integration of molecular embeddings enhances semantic analysis capabilities, bridging the gap between chemical structures and biological entities." ; dcterms:identifier "medkg" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:medkg.site ; schema1:name "MedKG" ; skos:inScheme "biomedical", "chemistry and biochemistry", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:medlineplus a schema1:DataSource ; rdfs:label "MedlinePlus" ; dcterms:created "2025-11-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "MedlinePlus is the premier online health information resource from the National Library of Medicine, providing comprehensive, trusted health and wellness information for patients, families, and the general public. As a service of the world's largest medical library and part of the National Institutes of Health, MedlinePlus delivers high-quality, evidence-based health content that is easy to understand, free of advertising, and available in both English and Spanish. The resource covers over 1,000 health topics including diseases, conditions, wellness information, and prevention strategies, with content organized into multiple categories including health topics, medical encyclopedia, drugs and supplements information, medical tests, healthy recipes, and genetics resources. MedlinePlus provides detailed information on prescription drugs, over-the-counter medicines, herbs, and supplements through its comprehensive drug information database. The medical encyclopedia contains thousands of articles, images, and videos covering diseases, symptoms, tests, and treatments. MedlinePlus Genetics offers information on genetic conditions, genes, chromosomes, and how genetic variations affect health." ; dcterms:identifier "medlineplus" ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:genecards.web.interface, kgr:kg-jensenlab-diseases.edges.kgx, kgr:kg-jensenlab-diseases.edges.trapi, kgr:kg-jensenlab-diseases.nodes.kgx, kgr:medgen.csv, kgr:medgen.mgdef, kgr:medlineplus.connect_api, kgr:medlineplus.genetics_api, kgr:medlineplus.kg-bioportal, kgr:medlineplus.rss_feeds, kgr:medlineplus.web_service, kgr:medlineplus.website, kgr:medlineplus.xml_files ; schema1:identifier "medlineplus" ; schema1:name "MedlinePlus" ; skos:inScheme "biomedical" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ncbi . kgr:mesh a schema1:Ontology ; rdfs:label "Medical Subject Headings (MeSH)" ; dcterms:created "2025-10-10T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Medical Subject Headings (MeSH) is a hierarchically-organized controlled vocabulary produced by the National Library of Medicine (NLM). It serves as the standard thesaurus for indexing and cataloging biomedical and health-related information in MEDLINE/PubMed and other NLM databases." ; dcterms:identifier "mesh" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:acukg.csv, kgr:acukg.json, kgr:acukg.rdf, kgr:alzkb.browser, kgr:alzkb.data, kgr:athena.mappings, kgr:athena.vocabularies, kgr:babel.compendia, kgr:biobricks-mesh.graph, kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:cardiokg.neo4j, kgr:ctd.anatomy, kgr:ctd.chem_gene_ixns, kgr:ctd.chemicals, kgr:ctd.chemicals_diseases, kgr:ctd.genes_diseases, kgr:ctd.medic, kgr:drugmechdb.graph, kgr:eram.downloads, kgr:eram.web, kgr:forum.api, kgr:forum.graph.dump, kgr:forum.void, kgr:forum.webapp, kgr:genecards.web.interface, kgr:hetionet.data.edges, kgr:hetionet.data.json, kgr:hetionet.data.neo4j, kgr:hetionet.data.nodes, kgr:hetionet.hetnetpy, kgr:hetionet.neo4j, kgr:hetionet.search, kgr:icees-kg.graph, kgr:icees-kg.metadata, kgr:icees-kg.trapi, kgr:kg-alzheimers.graph, kgr:med-rt.core_dts, kgr:med-rt.core_xml, kgr:medgen.csv, kgr:medgen.id-mappings, kgr:medgen.mgconso, kgr:medgen.mgdef, kgr:medgen.mgrel, kgr:medgen.mgsat, kgr:medgen.names, kgr:medkg.site, kgr:mesh.api.eutilities, kgr:mesh.api.rdf, kgr:mesh.ascii, kgr:mesh.browser, kgr:mesh.documentation, kgr:mesh.marc, kgr:mesh.ondemand, kgr:mesh.rdf, kgr:mesh.sparql.editor, kgr:mesh.xml, kgr:microbiomekg.api, kgr:mind.entities, kgr:mind.relations, kgr:mind.test, kgr:mind.train, kgr:mind.valid, kgr:obo-db-ingest.mesh.json, kgr:obo-db-ingest.mesh.obo, kgr:obo-db-ingest.mesh.owl, kgr:obo-db-ingest.mesh.tsv, kgr:openpredict.api, kgr:openpredict.predictions, kgr:orphanet.scientific_knowledge_files, kgr:pharmkg.graph, kgr:predict.method, kgr:predict.supporting-information, kgr:pubchem.substances.asn, kgr:pubchem.substances.sdf, kgr:rdf-portal.sparql.ncbi, kgr:spoke-okn.graph, kgr:spoke.graph, kgr:tera.cas-to-mesh-csv, kgr:tera.chebi-to-mesh-csv, kgr:tera.traits-nt, kgr:unibiomap.auxs, kgr:unibiomap.disease_desc, kgr:unibiomap.links, kgr:unibiomap.pred, kgr:unibiomap.pred.full ; schema1:identifier "mesh" ; schema1:name "Medical Subject Headings (MeSH)" ; doap:repository ; skos:inScheme "biomedical", "literature" ; adms:status "Active" ; foaf:homepage . kgr:metabokg a schema1:KnowledgeGraph ; rdfs:label "MetaboKG" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "MetaboKG is an analysis-centric knowledge graph framework for untargeted metabolomics. It transforms public mass-spectrometry repository outputs, GNPS molecular-networking jobs, library annotations, confidence evidence, sample metadata, and environmental and taxonomic context into RDF knowledge graphs that preserve links between annotations and their analytical artifacts, samples, and studies." ; dcterms:identifier "metabokg" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:metabokg.graph, kgr:metabokg.rml_mappings, kgr:metabokg.schema, kgr:metabokg.workflow ; schema1:name "MetaboKG" ; doap:repository ; skos:altLabel "MetaBoKG" ; skos:inScheme "chemistry and biochemistry", "environment", "metabolomics", "microbiology" ; adms:status "Active" ; foaf:homepage . kgr:metabolights a schema1:DataSource ; rdfs:label "MetaboLights" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "MetaboLights is EMBL-EBI's open repository for metabolomics experiments and derived information. It holds study metadata in ISA-Tab format, raw and processed spectra, and metabolite identifications across species and techniques (mass spectrometry and NMR), and its reference layer links metabolites to ChEBI. It held 3,490 public studies on 2026-10-04. Studies submitted from April 2025 are released under CC0; earlier studies are governed by the EMBL-EBI Terms of Use." ; dcterms:identifier "metabolights" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:metabolights.api, kgr:metabolights.code, kgr:metabolights.docs, kgr:metabolights.ebeye.complete, kgr:metabolights.ebeye.studies, kgr:metabolights.metabolites, kgr:metabolights.portal, kgr:metabolights.studies, kgr:metabolights.study-metabolites, kgr:omicsdi.api, kgr:omicsdi.portal ; schema1:name "MetaboLights" ; skos:altLabel "MTBLS" ; skos:inScheme "biological systems", "chemistry and biochemistry", "metabolomics" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ebi . kgr:metacyc a schema1:DataSource ; rdfs:label "MetaCyc" ; dcterms:created "2025-03-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway." ; dcterms:identifier "metacyc" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:humannet.network, kgr:humannet.network.symbol, kgr:metacyc.api, kgr:metacyc.portal, kgr:obo-db-ingest.rhea.sssom.tsv, kgr:skm.ckn.v1.annotations, kgr:skm.ckn.v1.graph, kgr:skm.ckn.v2.annotations, kgr:skm.ckn.v2.graph, kgr:spoke-okn.graph, kgr:spoke.graph ; schema1:identifier "metacyc" ; schema1:name "MetaCyc" ; skos:inScheme "metabolism", "pathways" ; adms:status "Active" ; foaf:homepage . kgr:metanetx a schema1:DataSource ; rdfs:label "MetaNetX" ; dcterms:created "2025-05-07T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "MetaNetX is an online platform for accessing, analyzing, and manipulating genome-scale metabolic networks (GSM) and biochemical pathways, integrating data from multiple sources with a unified namespace for metabolites and biochemical reactions." ; dcterms:identifier "metanetx" ; dcterms:isReferencedBy , , , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:metanetx.mnxref.metabolites, kgr:metanetx.mnxref.reactions, kgr:metanetx.rdf, kgr:metanetx.site, kgr:metanetx.sparql ; schema1:name "MetaNetX" ; skos:inScheme "chemistry and biochemistry", "metabolism", "pathways" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:sib . kgr:metatraits a schema1:KnowledgeGraph ; rdfs:label "metaTraits" ; dcterms:created "2026-02-21T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "metaTraits is a unified and accessible microbial trait resource that integrates culture-derived trait information from BacDive, BV-BRC, JGI IMG, and GOLD, with genome-based predictions for medium- and high-quality isolate and metagenome-assembled genomes (MAGs) from proGenomes and SPIRE. metaTraits covers over 2.2 million genomes and more than 140 harmonized traits mapped to standardized ontologies, spanning cell morphology (e.g., shape, size, Gram staining), physiology (e.g., motility, sporulation), metabolic and enzymatic activities, environmental preferences (e.g., temperature, salinity, oxygen tolerance), and lifestyle categories. All records are linked to their original evidence and cross-referenced to both NCBI and GTDB taxonomies." ; dcterms:identifier "metatraits" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:metatraits.gtdb.family-summary, kgr:metatraits.gtdb.genus-summary, kgr:metatraits.gtdb.species-summary, kgr:metatraits.gtdb2ncbi, kgr:metatraits.ncbi.family-summary, kgr:metatraits.ncbi.genus-summary, kgr:metatraits.ncbi.species-summary, kgr:metatraits.ncbi2gtdb, kgr:metatraits.site, kgr:metatraits.traits ; schema1:name "metaTraits" ; doap:repository ; skos:inScheme "genomics", "microbiology" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:european-molecular-biology-laboratory-embl . kgr:metpo a schema1:Ontology ; rdfs:label "METPO (Microbial Ecophysiological Trait and Phenotype Ontology)" ; dcterms:created "2025-11-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "METPO (Microbial Ecophysiological Trait and Phenotype Ontology) is an ontology for describing microbial ecophysiological traits and phenotypes relevant to microbial ecology and environmental systems biology." ; dcterms:identifier "metpo" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:kg-microbe.graph.biomedical, kgr:kg-microbe.graph.biomedical-function, kgr:kg-microbe.graph.core, kgr:kg-microbe.graph.function, kgr:kg-microbe.graph.raw, kgr:metpo.kg-bioportal, kgr:metpo.owl ; schema1:name "METPO (Microbial Ecophysiological Trait and Phenotype Ontology)" ; doap:repository ; skos:altLabel "METPO", "Microbial Ecophysiological Trait and Phenotype Ontology" ; skos:inScheme "microbiology", "systems biology" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:berkeleybop . kgr:mf a schema1:Ontology ; rdfs:label "Mental Functioning Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Mental Functioning Ontology is an overarching ontology for all aspects of mental functioning." ; dcterms:identifier "mf" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:mf.kg-bioportal, kgr:mf.owl ; schema1:name "Mental Functioning Ontology" ; doap:repository ; skos:inScheme "biomedical", "neuroscience" ; adms:status "Active" ; foaf:homepage . kgr:mfmo a schema1:Ontology ; rdfs:label "Mammalian Feeding Muscle Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Mammalian Feeding Muscle Ontology is an antomy ontology for the muscles of the head and neck that participate in feeding, swallowing, and other oral-pharyngeal behaviors." ; dcterms:identifier "mfmo" ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:mfmo.kg-bioportal, kgr:mfmo.owl ; schema1:name "Mammalian Feeding Muscle Ontology" ; doap:repository ; skos:inScheme "anatomy and development" ; adms:status "Inactive" ; foaf:homepage . kgr:mfo a schema1:Ontology ; rdfs:label "Medaka fish anatomy and development" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A structured controlled vocabulary of the anatomy and development of the Japanese medaka fish, Oryzias latipes." ; dcterms:identifier "mfo" ; dcterms:modified "2026-09-08T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:mfo.kg-bioportal, kgr:mfo.owl ; schema1:name "Medaka fish anatomy and development" ; skos:inScheme "anatomy and development" ; adms:status "Inactive" ; foaf:homepage . kgr:mfoem a schema1:Ontology ; rdfs:label "Emotion Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology of affective phenomena such as emotions, moods, appraisals and subjective feelings." ; dcterms:identifier "mfoem" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:mfoem.kg-bioportal, kgr:mfoem.owl ; schema1:name "Emotion Ontology" ; doap:repository ; skos:inScheme "biomedical", "neuroscience" ; adms:status "Active" ; foaf:homepage . kgr:mfomd a schema1:Ontology ; rdfs:label "Mental Disease Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology to describe and classify mental diseases such as schizophrenia, annotated with DSM-IV and ICD codes where applicable" ; dcterms:identifier "mfomd" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:mfomd.kg-bioportal, kgr:mfomd.owl ; schema1:name "Mental Disease Ontology" ; doap:repository ; skos:inScheme "biomedical", "mental disorders", "neuroscience" ; adms:status "Active" ; foaf:homepage . kgr:mgd a schema1:Aggregator ; rdfs:label "Mouse Genome Database" ; dcterms:created "2025-01-10T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Mouse Genome Database (MGD) is the international database resource for the laboratory mouse serving as the authoritative source of integrated genetic, genomic, and biological data to facilitate the study of human health and disease through mouse models. Developed and maintained by the Mouse Genome Informatics consortium at The Jackson Laboratory, MGD provides comprehensive information on mouse genes, genome features, mammalian orthology, phenotypes, allelic variants, disease models, and extensive curated experimental data. The database integrates multiple specialized resources including the Gene Expression Database documenting spatial and temporal patterns of gene expression during mouse development and adulthood, the Mouse Models of Human Cancer database cataloging spontaneous and induced tumors, and extensive phenotype annotations using the Mammalian Phenotype Ontology. MGD contains curated data for all mouse genes with standardized nomenclature, genomic coordinates, functional annotations from Gene Ontology, expression patterns, phenotype associations, human disease connections, and literature references. The resource supports comparative genomics by providing detailed orthology relationships between mouse and human genes enabling translation of findings between species for biomedical research. MGD offers sophisticated search interfaces for genes, phenotypes, alleles, strains, polymorphisms including dramatically expanded SNP data, recombinase activity patterns for cre lines, and RNA-seq experiments, along with genome browsers, batch query tools, and data downloads in various formats. The database integrates data from high-throughput projects including the International Mouse Phenotyping Consortium systematic knockout phenotyping and Ensembl regulatory annotations. With over 30 years of continuous development since its 1994 web release, MGD collaborates with the Alliance of Genome Resources to harmonize model organism data and serves as an essential resource for the global mouse research community providing standardized, expert-curated knowledge." ; dcterms:identifier "mgd" ; dcterms:isReferencedBy , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , , ; schema1:hasPart kgr:disgenet.data, kgr:mgd.downloads, kgr:mgd.gxd, kgr:mgd.mousemine, kgr:mgd.portal ; schema1:identifier "mgi" ; schema1:name "Mouse Genome Database" ; doap:repository ; skos:altLabel "MGD", "MGI", "Mouse Genome Database", "Mouse Genome Informatics" ; skos:inScheme "genomics", "model organisms", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:mgi a schema1:DataSource ; rdfs:label "Mouse Genome Informatics" ; dcterms:created "2026-02-26T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Mouse Genome Informatics is the international database resource for the laboratory mouse, providing integrated genetic, genomic, and biological data to support studies of human health and disease." ; dcterms:identifier "mgi" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:babel.compendia, kgr:dbnsfp.academic, kgr:dbnsfp.commercial, kgr:enrichr-kg.graph, kgr:gencode.mouse.gtf, kgr:genecards.web.interface, kgr:gp-kg.graph, kgr:kg-alzheimers.graph, kgr:kg-predict.gpkg, kgr:mgi.portal, kgr:mousemine.api, kgr:mousemine.querybuilder, kgr:mousemine.templates, kgr:mousemine.web, kgr:neo.model, kgr:neo.obo, kgr:obo-db-ingest.mgi.json, kgr:obo-db-ingest.mgi.obo, kgr:obo-db-ingest.mgi.owl, kgr:obo-db-ingest.mgi.sssom.tsv, kgr:obo-db-ingest.mgi.tsv, kgr:pavs-kg.api, kgr:pavs-kg.portal, kgr:pavs-kg.sparql, kgr:service-kp.trapi, kgr:sri-reference-kg.graph ; schema1:identifier "mgi" ; schema1:name "Mouse Genome Informatics" ; doap:repository ; skos:inScheme "genomics", "model organisms", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:mgmlink a schema1:KnowledgeGraph ; rdfs:label "MGMLink" ; dcterms:created "2025-04-13T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A knowledge graph of linked microbes, genes and metabolites." ; dcterms:identifier "mgmlink" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:mgmlink.code ; schema1:name "MGMLink" ; skos:inScheme "microbiology", "microbiome" ; adms:status "Active" ; foaf:homepage . kgr:mgnify a schema1:Aggregator ; rdfs:label "MGnify" ; dcterms:created "2025-09-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "MGnify is an active aggregator and analysis platform for microbiome and metagenomic data, providing tools for submission, analysis, visualization, and discovery of microbiome datasets from diverse biomes and environments. It is operated by EMBL-EBI and is an ELIXIR Core Data Resource." ; dcterms:identifier "mgnify" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:mgnify.api, kgr:mgnify.docs, kgr:mgnify.ftp, kgr:mgnify.genomes, kgr:mgnify.portal, kgr:mgnify.proteins, kgr:mgnify.training, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db ; schema1:name "MGnify" ; skos:inScheme "clinical", "environment", "genomics", "microbiology", "microbiome" ; adms:status "Active" ; foaf:homepage . kgr:mi a schema1:Ontology ; rdfs:label "Molecular Interactions Controlled Vocabulary" ; dcterms:created "2025-06-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions." ; dcterms:identifier "mi" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cancer-genome-interpreter.clinicalkg.graph, kgr:clinicalkg.graph, kgr:mi.kg-bioportal, kgr:mi.obo, kgr:mi.owl, kgr:mint.mitab.all, kgr:mint.mitab.drosophila, kgr:mint.mitab.human, kgr:mint.mitab.mouse, kgr:mint.mitab.yeast, kgr:mint.psicquic, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:identifier "mi" ; schema1:name "Molecular Interactions Controlled Vocabulary" ; doap:repository ; skos:inScheme "general", "protein interactions", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:miapa a schema1:Ontology ; rdfs:label "MIAPA Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An application ontology to formalize annotation of phylogenetic data." ; dcterms:identifier "miapa" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:miapa.kg-bioportal, kgr:miapa.owl ; schema1:name "MIAPA Ontology" ; doap:repository ; skos:inScheme "genomics", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:micro a schema1:Ontology ; rdfs:label "Ontology of Prokaryotic Phenotypic and Metabolic Characters" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology of prokaryotic phenotypic and metabolic characters" ; dcterms:identifier "micro" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:micro.owl ; schema1:name "Ontology of Prokaryotic Phenotypic and Metabolic Characters" ; doap:repository ; skos:inScheme "microbiology", "phenotype" ; adms:status "Inactive" ; foaf:homepage . kgr:microbiomekg a schema1:KnowledgeGraph ; rdfs:label "MicrobiomeKG" ; dcterms:created "2025-08-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "MicrobiomeKG is an integrative knowledge graph resource for multi-omics microbiome data linking microbial taxa, genes, metabolites, host phenotypes, pathways, and clinical variables to support systems biology analyses and translational research." ; dcterms:identifier "microbiomekg" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , ; schema1:hasPart kgr:microbiomekg.api ; schema1:identifier "multiomics-microbiome" ; schema1:name "MicrobiomeKG" ; skos:inScheme "biomedical", "microbiology", "microbiome", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:micromap a schema1:KnowledgeGraph ; rdfs:label "MicroMap" ; dcterms:created "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "MicroMap is a microbiome knowledge graph platform built by Graphomics on Neo4j. It links microbial taxa to diseases, metabolites, pathways, drugs, genes, proteins, body sites and literature. The graph is populated through MapForge, a BioCypher-compatible ingestion pipeline that turns tabular source data into parameterized Cypher bundles that a reviewer approves before any node is written. Loaders cover NCBI Taxonomy, Disbiome, gutMDisorder, BugSigDB, GMrepo, mBodyMap, HMDB, KEGG, ChEMBL, Reactome, PubChem, PubMed and SemMedDB. The ingestion software, API code and graph schema are open source under the MIT license. The populated production graph is served to Graphomics customers through a REST API and an MCP server and is not distributed as a bulk download. This resource is unrelated to the MicroMap microbiome-metabolism visualization resource from the Thiele lab (University of Galway, 2025)." ; dcterms:hasVersion "v0.1.4" ; dcterms:identifier "micromap" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:micromap.api, kgr:micromap.mapforge, kgr:micromap.schema ; schema1:name "MicroMap" ; doap:repository ; skos:inScheme "biomedical", "microbiology", "microbiome", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:mind a schema1:KnowledgeGraph ; rdfs:label "MIND" ; dcterms:created "2025-07-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Mechanistic Repositioning Network with Indications (MIND) is a knowledge graph incorporating two biomedical resources: MechRepoNet and DrugCentral. MechRepoNet is a knowledge graph comprising of 18 biomedical resources that reflects and expands on important drug mechanism relationships identified from a curated biomedical drug mechanism dataset. MIND was created by mapping DrugCentral edges to existing MechRepoNet nodes through the Unified Medical Language System (UMLS) and Medical Subject Headings (MeSH). The MIND training set has a total of 9,651,040 edges." ; dcterms:identifier "mind" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:mind.entities, kgr:mind.relations, kgr:mind.test, kgr:mind.train, kgr:mind.valid ; schema1:name "MIND" ; doap:repository ; skos:inScheme "biomedical", "drug discovery", "drug repositioning" ; adms:status "Active" ; foaf:homepage . kgr:mint a schema1:Aggregator ; rdfs:label "Mint" ; dcterms:created "2025-10-31T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "MINT (The Molecular INTeraction database) is a public and open source database focusing on experimentally verified protein-protein interactions mined from the scientific literature by expert curators. Molecular interactions are annotated according to international PSI-MI standards and follow the PSI-MI controlled vocabulary. MINT is a founder and main member of the IMEx consortium and provides data that is integrated into the IntAct database as part of a single non-redundant open access dataset. MINT is listed as an ELIXIR Core Data Resource and Global Core Biodata Resource." ; dcterms:identifier "mint" ; dcterms:isReferencedBy , , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:genecards.web.interface, kgr:genemania.networks, kgr:hippie.current.mitab, kgr:hippie.current.tab, kgr:hpidb.mitab, kgr:iid.human_annotated_ppis, kgr:iid.mouse_annotated_ppis, kgr:intact.api, kgr:intact.datasets, kgr:intact.ftp.psi25, kgr:intact.ftp.psi30, kgr:intact.ftp.psimitab, kgr:intact.ftp.psimitab.all, kgr:irefindex.database, kgr:mint.advanced.search, kgr:mint.mitab.all, kgr:mint.mitab.drosophila, kgr:mint.mitab.human, kgr:mint.mitab.mouse, kgr:mint.mitab.yeast, kgr:mint.portal, kgr:mint.psicquic, kgr:pharmdb.graph, kgr:string.cog.links, kgr:string.cog.links.detailed, kgr:string.database, kgr:string.protein.links, kgr:string.protein.links.detailed, kgr:string.protein.links.full, kgr:string.protein.physical.links, kgr:string.protein.physical.links.detailed, kgr:string.protein.physical.links.full ; schema1:identifier "mint" ; schema1:name "Mint" ; skos:altLabel "MINT", "Molecular INTeraction Database" ; skos:inScheme "protein interactions", "proteomics", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:mirbase a schema1:Aggregator ; rdfs:label "miRBase" ; dcterms:created "2004-01-01T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "miRBase is the primary online repository for microRNA sequences and annotations, serving as the central registry for microRNA nomenclature and providing a comprehensive archive of published microRNA data including sequences, annotations, predicted targets, and deep sequencing evidence." ; dcterms:identifier "mirbase" ; dcterms:isReferencedBy , , , , , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:genecards.web.interface, kgr:mirbase.ath-gff3, kgr:mirbase.browse, kgr:mirbase.cel-gff3, kgr:mirbase.dead, kgr:mirbase.diff, kgr:mirbase.dme-gff3, kgr:mirbase.dre-gff3, kgr:mirbase.ftp, kgr:mirbase.genomic-search, kgr:mirbase.hairpin-fa, kgr:mirbase.help, kgr:mirbase.hsa-gff3, kgr:mirbase.mature-fa, kgr:mirbase.mirna-dat, kgr:mirbase.mmu-gff3, kgr:mirbase.portal, kgr:mirbase.readme, kgr:mirbase.rno-gff3, kgr:mirbase.tissue-search, kgr:msigdb.downloads.human, kgr:msigdb.downloads.mouse, kgr:obo-db-ingest.mirbase.family.json, kgr:obo-db-ingest.mirbase.family.obo, kgr:obo-db-ingest.mirbase.family.owl, kgr:obo-db-ingest.mirbase.family.tsv, kgr:obo-db-ingest.mirbase.json, kgr:obo-db-ingest.mirbase.mature.json, kgr:obo-db-ingest.mirbase.mature.obo, kgr:obo-db-ingest.mirbase.mature.owl, kgr:obo-db-ingest.mirbase.mature.tsv, kgr:obo-db-ingest.mirbase.obo, kgr:obo-db-ingest.mirbase.owl, kgr:obo-db-ingest.mirbase.sssom.tsv, kgr:obo-db-ingest.mirbase.tsv, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db ; schema1:identifier "mirbase" ; schema1:name "miRBase" ; skos:inScheme "genomics", "non-coding RNA" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:university-of-manchester . kgr:mirdb a schema1:DataSource ; rdfs:label "miRDB" ; dcterms:created "2026-06-15T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "miRDB is an online database for microRNA (miRNA) target prediction and functional annotations. Targets are predicted by MirTarget, a computational tool trained on thousands of miRNA-target interactions from high-throughput sequencing experiments. The database covers millions of predicted targets regulated by thousands of miRNAs across human, mouse, rat, dog, and chicken, and supports target prediction by miRNA, by gene, and for user-provided custom sequences." ; dcterms:identifier "mirdb" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:mirdb.predicted-targets, kgr:mirdb.search ; schema1:name "miRDB" ; skos:inScheme "genomics", "non-coding RNA" ; adms:status "Active" ; foaf:homepage . kgr:mirgate a schema1:DataSource ; rdfs:label "miRGate" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "miRGate is a curated database of computationally predicted and experimentally validated miRNA-mRNA target pairs for human, mouse, and rat. The database integrates multiple prediction algorithms and includes sequences for both miRNAs and mRNA 3'-UTRs, along with experimentally validated data from four well-known databases. miRGate provides computational predictions using well-established algorithms and offers both a web interface and a REST API for programmatic access." ; dcterms:identifier "mirgate" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , , ; schema1:hasPart kgr:mirgate.api, kgr:mirgate.portal ; schema1:identifier "mirgate" ; schema1:name "miRGate" ; skos:altLabel "miRGate" ; skos:inScheme "genomics", "non-coding RNA" ; adms:status "unresponsive" ; foaf:homepage . kgr:mirgenedb a schema1:DataSource ; rdfs:label "MirGeneDB" ; dcterms:created "2025-09-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "MirGeneDB is a manually curated database of microRNA genes, providing validated and annotated microRNA gene entries for over 21,000 genes from 114 metazoan species. It offers uniform nomenclature, evolutionary context, and downloadable data for all species and families." ; dcterms:identifier "mirgenedb" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:genecards.web.interface, kgr:mirgenedb.bulk, kgr:mirgenedb.covariance, kgr:mirgenedb.info, kgr:mirgenedb.portal, kgr:mirgenedb.reads, kgr:mirgenedb.species_downloads, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db ; schema1:name "MirGeneDB" ; skos:inScheme "genomics", "non-coding RNA" ; adms:status "Active" ; foaf:homepage . kgr:mirnao a schema1:Ontology ; rdfs:label "microRNA Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An application ontology for use with miRNA databases." ; dcterms:identifier "mirnao" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:mirnao.kg-bioportal, kgr:mirnao.owl ; schema1:name "microRNA Ontology" ; skos:inScheme "chemistry and biochemistry", "genomics", "non-coding RNA" ; adms:status "Inactive" ; foaf:homepage . kgr:miro a schema1:Ontology ; rdfs:label "Mosquito insecticide resistance" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Application ontology for entities related to insecticide resistance in mosquitos" ; dcterms:identifier "miro" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:miro.kg-bioportal, kgr:miro.obo, kgr:miro.owl ; schema1:name "Mosquito insecticide resistance" ; doap:repository ; skos:inScheme "environment", "insects", "organisms" ; adms:status "Inactive" ; foaf:homepage . kgr:mirtarbase a schema1:DataSource ; rdfs:label "miRTarBase" ; dcterms:created "2025-07-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "miRTarBase is a comprehensive database of experimentally validated microRNA-target interactions (MTIs). It collects and curates miRNA-target interactions with experimental evidence from the literature, including data from reporter assays, western blot, qPCR, microarray, and high-throughput experiments such as CLIP-Seq." ; dcterms:identifier "mirtarbase" ; dcterms:isReferencedBy , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:genecards.web.interface, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:mechreponet.kg, kgr:mirtarbase.archive, kgr:mirtarbase.mti, kgr:mirtarbase.portal, kgr:mirtarbase.species_mti, kgr:mirtarbase.strong_evidence, kgr:mirtarbase.target_sites, kgr:pathwaycommons.biopax, kgr:pathwaycommons.downloads, kgr:pathwaycommons.gmt, kgr:pathwaycommons.sif, kgr:pathwaycommons.txt ; schema1:name "miRTarBase" ; skos:inScheme "genomics", "non-coding RNA" ; adms:status "Active" ; foaf:homepage . kgr:mixs a schema1:DataModel ; rdfs:label "MIxS" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "MIxS, or the Minimum Information about any (X) Sequence is a standard for describing the contextual information about the sampling and sequencing of any genomic sequence. The standard has Terms that describe characteristics of a sample that addresses: What is the source of the sequence? In what kind of environment was the sample collected? What methods were utilized to process the sample?" ; dcterms:identifier "mixs" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:mixs.kg-bioportal, kgr:mixs.model ; schema1:name "MIxS" ; doap:repository ; skos:inScheme "environment", "genomics", "microbiology" ; adms:status "Active" ; foaf:homepage . kgr:mmo a schema1:Ontology ; rdfs:label "Measurement method ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A representation of the variety of methods used to make clinical and phenotype measurements." ; dcterms:identifier "mmo" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:mmo.kg-bioportal, kgr:mmo.obo, kgr:mmo.owl ; schema1:name "Measurement method ontology" ; doap:repository ; skos:inScheme "biomedical", "clinical" ; adms:status "Active" ; foaf:homepage . kgr:mmrrc a schema1:DataSource ; rdfs:label "Mutant Mouse Resource and Research Centers" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Mutant Mouse Resource and Research Centers (MMRRC) is the NIH-funded national public repository and distribution archive of genetically engineered and mutant laboratory mouse strains in the United States. It maintains live mice, cryopreserved embryos and sperm, embryonic stem cell lines, and hybridomas for tens of thousands of alleles, together with associated genotype and phenotype data. The MMRRC consortium comprises regionally distributed vivaria and an Informatics Coordination and Service Center, and its strain catalog and phenotype annotations serve as an upstream source for integrative knowledge graphs such as Monarch and the NCATS SRI Reference KG." ; dcterms:identifier "mmrrc" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:mmrrc.api, kgr:mmrrc.catalog, kgr:mmrrc.data-download, kgr:sri-reference-kg.graph ; schema1:name "Mutant Mouse Resource and Research Centers" ; skos:inScheme "biomedical", "genomics", "model organisms", "organisms", "phenotype" ; adms:status "Active" ; foaf:homepage . kgr:mmusdv a schema1:Ontology ; rdfs:label "Mouse Developmental Stages" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Life cycle stages for Mus Musculus" ; dcterms:identifier "mmusdv" ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:mmusdv.kg-bioportal, kgr:mmusdv.obo, kgr:mmusdv.owl ; schema1:name "Mouse Developmental Stages" ; doap:repository ; skos:inScheme "anatomy and development" ; adms:status "Active" ; foaf:homepage . kgr:mo a schema1:Ontology ; rdfs:label "Microarray experimental conditions" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A standardized description of a microarray experiment in support of MAGE v.1." ; dcterms:identifier "mo" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:mo.kg-bioportal, kgr:mo.owl ; schema1:name "Microarray experimental conditions" ; doap:repository ; skos:inScheme "biomedical", "general", "genomics" ; adms:status "Inactive" ; foaf:homepage . kgr:mod a schema1:Ontology ; rdfs:label "Protein modification" ; dcterms:created "2025-08-12T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PSI-MOD is an ontology consisting of terms that describe protein chemical modifications" ; dcterms:identifier "mod" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cancer-genome-interpreter.clinicalkg.graph, kgr:clinicalkg.graph, kgr:mod.obo, kgr:mod.owl ; schema1:name "Protein modification" ; doap:repository ; skos:inScheme "chemistry and biochemistry", "post-translational modification", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:modomics a schema1:DataSource ; rdfs:label "MODOMICS" ; dcterms:created "2025-09-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "MODOMICS is a comprehensive database of RNA modifications that provides detailed information about the chemical structures of modified ribonucleosides, their biosynthetic pathways, the location of modified residues in RNA sequences, RNA modifying enzymes, and associated human diseases." ; dcterms:identifier "modomics" ; dcterms:isReferencedBy , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:genecards.web.interface, kgr:modomics.annotation, kgr:modomics.api, kgr:modomics.help, kgr:modomics.images, kgr:modomics.mol2, kgr:modomics.n3, kgr:modomics.owl, kgr:modomics.pdb, kgr:modomics.portal, kgr:modomics.positions, kgr:modomics.sdf, kgr:modomics.search, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db ; schema1:name "MODOMICS" ; skos:inScheme "chemistry and biochemistry", "genomics", "non-coding RNA" ; adms:status "Active" ; foaf:homepage . kgr:molepro a schema1:Aggregator ; rdfs:label "Molecular Data Provider" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Molecular Data Provider (MolePro) is part of the NCATS Biomedical Data Translator project, integrating diverse chemical biology data sources into a curated framework for chemical entities and their effects on biological targets. MolePro consolidates information from over two dozen public chemical biology datasets, portals, and tools, providing comprehensive insights into compounds, protein targets, and similarity-based connections through both a custom API and TRAPI interface." ; dcterms:identifier "molepro" ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ars.api, kgr:ars.portal, kgr:automat.molepro, kgr:cqs.code, kgr:molepro.api, kgr:molepro.catalog, kgr:molepro.graph.edges, kgr:molepro.graph.nodes, kgr:molepro.trapi ; schema1:identifier "molepro" ; schema1:name "Molecular Data Provider" ; doap:repository ; skos:altLabel "MolePro", "Molecular Data Provider" ; skos:inScheme "biomedical", "chemistry and biochemistry", "drug discovery", "pharmacology" ; skos:related "translator" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:broad . kgr:mondo a schema1:Ontology ; rdfs:label "Mondo Disease Ontology" ; dcterms:created "2025-04-22T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A global community effort to harmonize multiple disease resources to yield a coherent merged ontology." ; dcterms:identifier "mondo" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:automat.robokopkg, kgr:babel.compendia, kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:cardiokg.neo4j, kgr:drug-approvals-kp.graph.edges, kgr:drug-approvals-kp.graph.nodes, kgr:efo.obo, kgr:efo.owl, kgr:epigraphdb.graph, kgr:genecards.web.interface, kgr:gtrx.data, kgr:icees-kg.graph, kgr:icees-kg.metadata, kgr:icees-kg.trapi, kgr:kg-alzheimers.graph, kgr:kg-covid-19.graph, kgr:kg-idg.graph, kgr:kg-microbe.graph.biomedical, kgr:kg-microbe.graph.biomedical-function, kgr:kg-microbe.graph.core, kgr:kg-microbe.graph.function, kgr:kg-microbe.graph.raw, kgr:medgen.csv, kgr:medgen.id-mappings, kgr:medgen.mgconso, kgr:medgen.mgdef, kgr:medgen.mgrel, kgr:medgen.mgsat, kgr:medgen.mondo-history, kgr:medgen.names, kgr:medi.github, kgr:medi.matrix_indication_list, kgr:medkg.site, kgr:microbiomekg.api, kgr:mondo.json, kgr:mondo.mondo-base.owl, kgr:mondo.mondo-simple.owl, kgr:mondo.obo, kgr:mondo.owl, kgr:mondo.sssom, kgr:mydisease.api, kgr:ncatsgardkg.graph, kgr:nlm-ckn.graph, kgr:np-kg.graph.networkx, kgr:np-kg.graph.tsv, kgr:oard-kg.sparql, kgr:oard-kg.tpf, kgr:orphanet.scientific_knowledge_files, kgr:pavs-kg.api, kgr:pavs-kg.phenopackets, kgr:pavs-kg.portal, kgr:pavs-kg.sparql, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:pheknowlator.graph, kgr:primekg.graph, kgr:raras.encyclopedia, kgr:raras.portal, kgr:rdkg.tpf, kgr:rna-kg.kg.edges, kgr:rna-kg.kg.neo4j, kgr:rna-kg.kg.nodes, kgr:rtx-kg2.graph.edges, kgr:rtx-kg2.graph.nodes, kgr:rtx-kg2.neo4j, kgr:service-kp.trapi, kgr:sniff.federation-edges, kgr:sniff.federation-nodes, kgr:sri-reference-kg.graph, kgr:sugi-atlas.portal, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:identifier "mondo" ; schema1:name "Mondo Disease Ontology" ; doap:repository ; skos:inScheme "biomedical" ; adms:status "Active" ; foaf:homepage . kgr:mop a schema1:Ontology ; rdfs:label "Molecular Process Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Processes at the molecular level" ; dcterms:identifier "mop" ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:mop.kg-bioportal, kgr:mop.owl ; schema1:identifier "mop" ; schema1:name "Molecular Process Ontology" ; doap:repository ; skos:inScheme "chemistry and biochemistry" ; adms:status "Active" ; foaf:homepage . kgr:motifmap a schema1:DataSource ; rdfs:label "MotifMap" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "MotifMap is a system from UC Irvine that provides integrative genome-wide maps of predicted transcription factor binding sites (regulatory motifs) across the human genome and other model species. It combines databases of transcription factor binding motifs, refined multiple-genome alignments, and a comparative genomic statistical scoring approach (Bayesian Branch Length Score) to call candidate regulatory motif sites with associated false discovery rates. The released maps cover yeast, fly, worm, mouse, and human, with the human map containing over 500,000 sites for hundreds of motif matrices. MotifMap is an upstream source of the GenomicKB knowledge graph." ; dcterms:identifier "motifmap" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:genomickb.graph, kgr:motifmap.portal ; schema1:name "MotifMap" ; skos:inScheme "gene regulation", "genomics", "systems biology" ; adms:status "Inactive" ; foaf:homepage . kgr:motrpac a schema1:DataSource ; rdfs:label "Molecular Transducers of Physical Activity Consortium (MoTrPAC) Data Hub" ; dcterms:created "2025-10-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Molecular Transducers of Physical Activity Consortium (MoTrPAC) Data Hub is a national research initiative that generates a comprehensive molecular map of the effects of exercise and physical activity training. The data repository provides multi-omics datasets documenting molecular changes from exercise across multiple tissues, including transcriptomics, proteomics, metabolomics, and epigenomics data. The complete young adult rat endurance training dataset is publicly available, featuring quantitative results and analyses from 20 tissues across 29 assays and 5 time points, studying male and female animals. The data hub provides both browsable study data and pre-bundled datasets organized by tissue type and omics platform, all released under CC BY 4.0 license. The resource includes phenotypic data, sample-level metadata, quality control metrics, and quantitative results to enable comprehensive analysis of the temporal dynamics of multi-omic responses to endurance exercise training." ; dcterms:identifier "motrpac" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:cfde-gse.genesets, kgr:cfde-gse.graph, kgr:digcfdekg.graph, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:motrpac.atac-seq-pipeline, kgr:motrpac.bic-qc, kgr:motrpac.code-repositories, kgr:motrpac.data-access, kgr:motrpac.data-browser, kgr:motrpac.data-hub, kgr:motrpac.epigenomics, kgr:motrpac.metabolomics-targeted, kgr:motrpac.metabolomics-untargeted, kgr:motrpac.phenotype, kgr:motrpac.proteomics-pipeline, kgr:motrpac.proteomics-targeted, kgr:motrpac.proteomics-untargeted, kgr:motrpac.publications, kgr:motrpac.rat-training-6mo, kgr:motrpac.rat-training-6mo-data, kgr:motrpac.rna-seq-pipeline, kgr:motrpac.rna-splicing-pipeline, kgr:motrpac.rrbs-pipeline, kgr:motrpac.search, kgr:motrpac.transcriptomics, kgr:motrpac.video-tutorials, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:name "Molecular Transducers of Physical Activity Consortium (MoTrPAC) Data Hub" ; doap:repository ; skos:inScheme "biomedical", "genomics", "proteomics", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:mousemine a schema1:Aggregator ; rdfs:label "MouseMine" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "MouseMine is an InterMine data warehouse that provides integrated access to mouse genomic, phenotypic, expression, and disease data from Mouse Genome Informatics (MGI)." ; dcterms:identifier "mousemine" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:mousemine.api, kgr:mousemine.querybuilder, kgr:mousemine.templates, kgr:mousemine.web ; schema1:identifier "mousemine" ; schema1:name "MouseMine" ; skos:altLabel "Mouse Genome Informatics MouseMine", "MouseMine" ; skos:inScheme "biomedical", "genomics", "model organisms", "organisms", "pathways", "phenotype" ; adms:status "Active" ; foaf:homepage . kgr:mp a schema1:Ontology ; rdfs:label "Mammalian Phenotype Ontology" ; dcterms:created "2025-06-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Standard terms for annotating mammalian phenotypic data." ; dcterms:identifier "mp" ; dcterms:isReferencedBy , , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:babel.compendia, kgr:efo.obo, kgr:efo.owl, kgr:eram.downloads, kgr:eram.web, kgr:gp-kg.graph, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:kg-predict.gpkg, kgr:mp.json, kgr:mp.kg-bioportal, kgr:mp.mp-base.owl, kgr:mp.obo, kgr:mp.owl, kgr:pavs-kg.api, kgr:pavs-kg.portal, kgr:pavs-kg.sparql, kgr:sri-reference-kg.graph, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:identifier "mp" ; schema1:name "Mammalian Phenotype Ontology" ; doap:repository ; skos:inScheme "phenotype" ; adms:status "Active" ; foaf:homepage . kgr:mpath a schema1:Ontology ; rdfs:label "Mouse pathology ontology" ; dcterms:created "2025-06-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes" ; dcterms:identifier "mpath" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:efo.obo, kgr:efo.owl, kgr:mpath.kg-bioportal, kgr:mpath.owl, kgr:sri-reference-kg.graph ; schema1:identifier "mpath" ; schema1:name "Mouse pathology ontology" ; doap:repository ; skos:inScheme "biomedical", "phenotype" ; adms:status "Active" ; foaf:homepage . kgr:mpio a schema1:Ontology ; rdfs:label "Minimum PDDI Information Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology of minimum information regarding potential drug-drug interaction information." ; dcterms:identifier "mpio" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:mpio.kg-bioportal, kgr:mpio.owl ; schema1:name "Minimum PDDI Information Ontology" ; doap:repository ; skos:inScheme "biomedical", "drug interactions", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:mps-db a schema1:DataSource ; rdfs:label "Microphysiology Systems Database" ; dcterms:created "2026-10-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Microphysiology Systems Database (MPS-Db) was a web-based database developed at the University of Pittsburgh Drug Discovery Institute and Department of Computational and Systems Biology for capturing, managing, analyzing and sharing experimental data from microphysiology systems, from static microplate models to multi-organ microfluidic organ-on-chip models. It linked these data to reference chemical, bioactivity, preclinical, clinical and post-marketing data from ChEMBL, PubChem, DrugBank, UniChem, OpenFDA and FAERS, and served as the data platform for the NCATS Tissue Chip Testing Center program. The Pitt-hosted MPS-Db is no longer available in its published form - its homepage now redirects to EveAnalytics, a login-only commercial successor platform operated under license from the University of Pittsburgh." ; dcterms:identifier "mps-db" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-10-03T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:mps-db.eveanalytics, kgr:mps-db.portal ; schema1:name "Microphysiology Systems Database" ; skos:altLabel "BioSystics Analytics Platform", "BioSystics-AP", "MPS Database", "MPS-Db" ; skos:inScheme "anatomy and development", "drug discovery", "pharmacology", "toxicology" ; adms:status "Inactive" ; foaf:homepage . kgr:mrbase a schema1:DataSource ; rdfs:label "MR-Base" ; dcterms:created "2025-09-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "MR-Base is a platform that integrates a large database of harmonized GWAS summary association datasets with analytical tools (web apps and R packages) to support systematic two-sample Mendelian randomization (2SMR) and phenome-wide causal inference across the human phenome." ; dcterms:identifier "mrbase" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:epigraphdb.graph, kgr:mrbase.api, kgr:mrbase.home, kgr:mrbase.mrinstruments, kgr:mrbase.paper.reproducibility, kgr:mrbase.phewas, kgr:mrbase.twosamplemr, kgr:mrbase.twosamplemr.docs, kgr:mrbase.webapp, kgr:opengwas.api, kgr:opengwas.datasets, kgr:opengwas.portal, kgr:prsatlas.dryad, kgr:prsatlas.results_5e05, kgr:prsatlas.results_5e08 ; schema1:name "MR-Base" ; skos:inScheme "biomedical", "genome-wide association studies", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:mro a schema1:Ontology ; rdfs:label "MHC Restriction Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology for Major Histocompatibility Complex (MHC) restriction in experiments" ; dcterms:identifier "mro" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:mro.kg-bioportal, kgr:mro.owl ; schema1:name "MHC Restriction Ontology" ; doap:repository ; skos:inScheme "chemistry and biochemistry", "immunology" ; adms:status "Active" ; foaf:homepage . kgr:ms a schema1:Ontology ; rdfs:label "Mass spectrometry ontology" ; dcterms:created "2025-08-12T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A structured controlled vocabulary for the annotation of experiments concerned with proteomics mass spectrometry." ; dcterms:identifier "ms" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cancer-genome-interpreter.clinicalkg.graph, kgr:clinicalkg.graph, kgr:jpost.ontology, kgr:jpost.rdf, kgr:metabokg.graph, kgr:metabokg.schema, kgr:ms.kg-bioportal, kgr:ms.obo, kgr:ms.owl ; schema1:name "Mass spectrometry ontology" ; doap:repository ; skos:inScheme "biomedical", "chemistry and biochemistry", "general", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:msigdb a schema1:DataSource ; rdfs:label "Molecular Signatures Database" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Molecular Signatures Database (MSigDB) is a comprehensive collection of tens of thousands of annotated gene sets for use with Gene Set Enrichment Analysis (GSEA) software. MSigDB includes curated gene sets from pathway databases, gene ontology annotations, hallmark gene sets, immunologic signatures, regulatory target sets, and cell type-specific signatures derived from single-cell sequencing studies. Available for both human and mouse, with the current public site listing Human MSigDB v2026.1.Hs and Mouse MSigDB v2026.1.Mm." ; dcterms:identifier "msigdb" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; schema1:about , ; schema1:hasPart kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:cfde-gse.genesets, kgr:cfde-gse.graph, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:molepro.api, kgr:molepro.catalog, kgr:molepro.graph.edges, kgr:molepro.graph.nodes, kgr:molepro.trapi, kgr:msigdb.browser, kgr:msigdb.collections.human, kgr:msigdb.collections.mouse, kgr:msigdb.downloads.human, kgr:msigdb.downloads.mouse, kgr:msigdb.gene_families, kgr:msigdb.investigate, kgr:obo-db-ingest.msigdb.json, kgr:obo-db-ingest.msigdb.obo, kgr:obo-db-ingest.msigdb.owl, kgr:obo-db-ingest.msigdb.sssom.tsv, kgr:obo-db-ingest.msigdb.tsv, kgr:pathwaycommons.biopax, kgr:pathwaycommons.downloads, kgr:pathwaycommons.gmt, kgr:pathwaycommons.sif, kgr:pathwaycommons.txt, kgr:prokn.msigdb.msigdb.chr_band_contains_gene.gene.edges, kgr:prokn.msigdb.msigdb.has_marker_gene.gene.edges, kgr:prokn.msigdb.msigdb.has_signature_gene.gene.edges, kgr:prokn.msigdb.msigdb.pathway_associated_with_gene.gene.edges, kgr:prokn.msigdb.msigdb.targets_expression_of_gene.gene.edges, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:identifier "msigdb" ; schema1:name "Molecular Signatures Database" ; skos:altLabel "MSigDB" ; skos:inScheme "genomics", "pathways", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:mtbs a schema1:DataSource ; rdfs:label "Monitoring Trends in Burn Severity" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Monitoring Trends in Burn Severity (MTBS) is an interagency program that consistently maps the burn severity and perimeter extent of large wildfires across all lands of the United States from 1984 to the present. Fires are mapped where they meet size thresholds of 1,000 acres or greater in the western U.S. and 500 acres or greater in the eastern U.S., covering the continental U.S., Alaska, Hawaii, and Puerto Rico. The program is a joint effort of the U.S. Geological Survey (USGS) and the USDA Forest Service. MTBS data serve as an upstream source for KnowWhereGraph." ; dcterms:identifier "mtbs" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:knowwheregraph.graph, kgr:mtbs.direct-download, kgr:mtbs.viewer ; schema1:name "Monitoring Trends in Burn Severity" ; skos:inScheme "environment", "wildfires" ; adms:status "Active" ; foaf:homepage . kgr:multiomics-kp a schema1:KnowledgeGraph ; rdfs:label "Multiomics KP" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A Translator Knowledge Provider incorporating multiomics data." ; dcterms:identifier "multiomics-kp" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:automat.ehr-clinical-connections, kgr:automat.maytreatkp, kgr:cqs.code, kgr:multiomics-kp.code, kgr:multiomics-kp.docs, kgr:multiomics-kp.graph, kgr:service-kp.trapi ; schema1:name "Multiomics KP" ; skos:inScheme "biomedical", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:mutationds a schema1:DataSource ; rdfs:label "Catalog of Validated Oncogenic Mutations" ; dcterms:created "2025-08-12T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Catalog of Validated Oncogenic Mutations is part of the Cancer Genome Interpreter and contains a compiled inventory of mutations in cancer genes that are demonstrated to drive tumor growth or predispose to cancer, combining data from DoCM, ClinVar, OncoKB, and experimental assays." ; dcterms:identifier "mutationds" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cancer-genome-interpreter.clinicalkg.graph, kgr:clinicalkg.graph ; schema1:name "Catalog of Validated Oncogenic Mutations" ; skos:altLabel "CGI Mutations", "MutationDS" ; skos:inScheme "biomedical", "cancer", "genetic variation", "genomics" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:cgi-team . kgr:mw a schema1:DataSource ; rdfs:label "Metabolomics Workbench" ; dcterms:created "2025-06-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Metabolomics Workbench is a public repository for metabolomics data and metadata, serving as the National Metabolomics Data Repository (NMDR). It provides tools, protocols, training, and access to over 2,000 metabolomics studies containing data from more than 75,000 samples and 32,000 known metabolites. Funded by the NIH Common Fund from 2012-2022." ; dcterms:identifier "mw" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:digcfdekg.graph, kgr:mw.portal, kgr:omicsdi.api, kgr:omicsdi.portal, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:name "Metabolomics Workbench" ; skos:altLabel "MW", "NMDR", "National Metabolomics Data Repository" ; skos:inScheme "biomedical", "chemistry and biochemistry", "metabolomics" ; adms:status "Active" ; foaf:homepage . kgr:myaura a schema1:KnowledgeGraph ; rdfs:label "myAURA KG" ; dcterms:created "2026-06-12T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "myAURA is a patient-centered epilepsy application and multilayer knowledge graph that integrates heterogeneous epilepsy-relevant resources, including biomedical databases, social media, electronic health records, and literature, to support self-management, care decisions, sparsified graph exploration, and personalized health-library visualization." ; dcterms:identifier "myaura" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:myaura.graph, kgr:myaura.portal, kgr:myaura.workflow ; schema1:name "myAURA KG" ; doap:repository ; skos:inScheme "biomedical", "clinical", "electronic health records", "information technology", "neuroscience" ; adms:status "Active" ; foaf:homepage . kgr:mychem a schema1:Aggregator ; rdfs:label "MyChem.info" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "MyChem.info is a BioThings web service from the Su and Wu labs at Scripps Research that serves chemical and drug annotations aggregated from sources such as ChEMBL, DrugBank, DrugCentral, ChEBI, PubChem, UNII and GSRS, NDC, UMLS, PharmGKB, Guide to Pharmacology, UniChem, AEOLUS and SIDER. Records are keyed mainly by InChIKey and are served through a REST query API. The build of 2026-08-17 held about 198 million chemical records." ; dcterms:identifier "mychem" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:mychem.api, kgr:mychem.code, kgr:mychem.docs, kgr:mychem.metadata, kgr:mychem.python-client, kgr:service-kp.trapi ; schema1:identifier "mychem-info" ; schema1:name "MyChem.info" ; doap:repository ; skos:altLabel "MyChem", "mychem.info" ; skos:inScheme "chemistry and biochemistry", "drug discovery", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:mydisease a schema1:Aggregator ; rdfs:label "MyDisease.info" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "MyDisease.info is a BioThings web service from the Su and Wu labs at Scripps Research that serves disease annotations aggregated from Mondo, the Human Disease Ontology, HPO disease annotations, CTD and UMLS. Records are keyed mainly by Mondo identifiers and are served through a REST query API. The build of 2026-09-01 held about 353,000 disease records." ; dcterms:identifier "mydisease" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:mydisease.api, kgr:mydisease.code, kgr:mydisease.docs, kgr:mydisease.metadata, kgr:service-kp.trapi ; schema1:identifier "mydisease-info" ; schema1:name "MyDisease.info" ; doap:repository ; skos:altLabel "MyDisease", "mydisease.info" ; skos:inScheme "biomedical", "clinical" ; adms:status "Active" ; foaf:homepage . kgr:mygene a schema1:Aggregator ; rdfs:label "MyGene.info" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "MyGene.info is a BioThings web service from the Su and Wu labs at Scripps Research that serves gene annotations aggregated from about 30 sources, including NCBI Gene, Ensembl, UniProt, RefSeq, Gene Ontology, Reactome, WikiPathways, KEGG, PANTHER, InterPro, ChEMBL, PharmGKB, ClinGen and the Alliance of Genome Resources, through a fast query and annotation API. The build of 2026-09-22 covered about 94 million genes from about 54,000 species. It is one of the knowledge sources of the Translator Service Provider KP." ; dcterms:identifier "mygene" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:about , , , , , , , , ; schema1:hasPart kgr:mygene.api, kgr:mygene.code, kgr:mygene.docs, kgr:mygene.metadata, kgr:mygene.python, kgr:service-kp.trapi ; schema1:identifier "mygene-info" ; schema1:name "MyGene.info" ; doap:repository ; skos:altLabel "MyGene", "mygene.info" ; skos:inScheme "biomedical", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:myvariant a schema1:Aggregator ; rdfs:label "MyVariant.info" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "MyVariant.info is a BioThings web service from the Su and Wu labs at Scripps Research that serves human genetic variant annotations aggregated from about 20 sources, including dbSNP, ClinVar, gnomAD, ExAC, dbNSFP, CADD, CIViC, COSMIC, DoCM, the Cancer Genome Interpreter, the GWAS Catalog and SnpEff predictions, through a fast query and annotation API keyed on HGVS identifiers. The build of 2025-06-24 held about 1.51 billion variant documents. It is one of the knowledge sources of the Translator Service Provider KP." ; dcterms:identifier "myvariant" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:myvariant.api, kgr:myvariant.code, kgr:myvariant.docs, kgr:myvariant.metadata, kgr:myvariant.python, kgr:service-kp.trapi ; schema1:identifier "myvariant-info" ; schema1:name "MyVariant.info" ; doap:repository ; skos:altLabel "MyVariant", "myvariant-info" ; skos:inScheme "biomedical", "clinical", "genetic variation", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:n2t a schema1:Aggregator ; rdfs:label "N2T" ; dcterms:created "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "N2T (Name-to-Thing) is a resolver for persistent and compact identifiers run by the California Digital Library. Given an identifier of the form scheme:prefix/value, such as an ARK, DOI or biomedical compact identifier (CURIE), it matches the scheme to a registered definition and redirects to the target resolver. N2T shares a common compact identifier prefix space with identifiers.org under an agreement between CDL and EMBL-EBI. The service was re-platformed as a lighter scheme resolver (version 0.12.5 when checked on 2026-10-05); the legacy N2T service is deprecated, ARK resolution now forwards to arks.org, and the ARK NAAN and shoulder registries moved to GitHub Pages. As of 2026-10-05 it listed 1,776 registered schemes." ; dcterms:identifier "n2t" ; dcterms:isReferencedBy ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:bioregistry.registry.json, kgr:bioregistry.sssom, kgr:n2t.code, kgr:n2t.docs, kgr:n2t.naan-registry, kgr:n2t.prefixes, kgr:n2t.resolver, kgr:n2t.schemes ; schema1:name "N2T" ; doap:repository ; skos:altLabel "N2T.net", "Name-to-Thing" ; skos:inScheme "information technology", "metadata" ; adms:status "Active" ; foaf:homepage . kgr:naaccr a schema1:DataSource ; rdfs:label "North American Association of Central Cancer Registries" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The North American Association of Central Cancer Registries (NAACCR) is a collaborative umbrella organization for cancer registries, governmental agencies, and professional associations across North America. NAACCR develops and maintains the standardized NAACCR data standards and data dictionary used for the consistent collection, coding, and exchange of cancer incidence records by central cancer registries. These standards define the data items, codes, and record layouts used to capture cancer surveillance data across registries." ; dcterms:identifier "naaccr" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cancer-registry-kg.kcr, kgr:cancer-registry-kg.ltr, kgr:naaccr.data-dictionary, kgr:naaccr.standards ; schema1:name "North American Association of Central Cancer Registries" ; skos:inScheme "biomedical", "cancer", "clinical", "clinical coding", "disease registries", "information technology", "public health" ; adms:status "Active" ; foaf:homepage . kgr:naics a schema1:DataSource ; rdfs:label "North American Industry Classification System (NAICS)" ; dcterms:created "2026-07-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The North American Industry Classification System (NAICS) is the standard used by US federal statistical agencies to classify business establishments by their type of economic activity. Developed jointly by the United States, Canada, and Mexico, NAICS assigns each establishment a hierarchical industry code. SAWGraph uses NAICS codes to classify the industry of facilities in its Facilities and Industries Ontology (FIO) knowledge graph, where facility records drawn from EPA's Facility Registry Service carry NAICS classifications." ; dcterms:identifier "naics" ; dcterms:license "US federal government public domain" ; dcterms:modified "2026-07-03T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:fiokg.graph, kgr:naics.landing ; schema1:name "North American Industry Classification System (NAICS)" ; skos:inScheme "general" ; adms:status "Active" ; foaf:homepage . kgr:nalt a schema1:DataSource ; rdfs:label "National Agricultural Library Thesaurus" ; dcterms:created "2026-07-01T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The National Agricultural Library Thesaurus (NALT) is a controlled vocabulary of agricultural terms maintained by the USDA National Agricultural Library. It provides standardized terminology and hierarchical relationships covering agriculture, biology, the environment, and related sciences, and is published as SKOS linked data. NALT is used to semantically align terms in downstream resources such as the Soil Organic Carbon Knowledge Graph (SOCKG), where roughly 61% of the graph's classes and properties are mapped to NALT concepts for consistent terminology and interoperability." ; dcterms:identifier "nalt" ; dcterms:license "U.S. Government Work (public domain)" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:nalt.browser, kgr:nalt.lod, kgr:sockg.graph ; schema1:name "National Agricultural Library Thesaurus" ; skos:inScheme "agriculture", "environment" ; adms:status "Active" ; foaf:homepage . kgr:name-resolver a schema1:Aggregator ; rdfs:label "SRI Name Resolver" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Name Resolver (also called Name Lookup or NameRes) is an NCATS Biomedical Data Translator Standards and Reference Implementation (SRI) service developed at RENCI. It maps free-text names and synonyms to normalized identifiers (CURIEs), with labels and Biolink types, and offers autocomplete, bulk lookup and reverse lookup of the synonyms known for a CURIE. Its index is built from the Babel synonym files, and all returned identifiers are normalized consistently with the SRI Node Normalizer, with GeneProtein and DrugChemical conflation applied." ; dcterms:identifier "name-resolver" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:name-resolver.api, kgr:name-resolver.code, kgr:name-resolver.docs, kgr:name-resolver.translator-api ; schema1:identifier "sri-name-resolver" ; schema1:name "SRI Name Resolver" ; doap:repository ; skos:altLabel "Name Lookup", "Name Resolution", "NameRes" ; skos:inScheme "biomedical", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:namsnetwork a schema1:KnowledgeGraph ; rdfs:label "NAMs Network" ; dcterms:created "2025-12-13T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "NAMs.network is the first database of regulatory-relevant New Approach Methodologies (NAMs) for assessing the safety of materials and chemicals. Given the ethical, economic, and time-related challenges associated with animal testing, as well as emerging bans on such methods in the EU, it is paramount to develop and validate alternative in silico, in chemico, in vitro, and ex vivo approaches. NAMs.network provides state-of-the-art knowledge on different NAMs for materials and chemical safety assessment." ; dcterms:identifier "namsnetwork" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:namsnetwork.portal ; schema1:name "NAMs Network" ; skos:inScheme "chemistry and biochemistry", "toxicology" ; adms:status "Active" ; foaf:homepage . kgr:nanopublications a schema1:DataModel ; rdfs:label "Nanopublications Network" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Nanopublications are a format for publishing scientific claims as small, machine-readable, FAIR digital objects using RDF semantic web technology. Each nanopublication consists of three parts - an assertion, provenance metadata, and publication info - forming minimal publishable information units that can be cited, queried, and reused." ; dcterms:identifier "nanopublications" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:nanopublications.docs, kgr:nanopublications.portal, kgr:nanopublications.servers ; schema1:identifier "nanopublications" ; schema1:name "Nanopublications Network" ; doap:repository ; skos:altLabel "Nanopublications", "Nanopubs" ; skos:inScheme "information technology", "literature", "scholarly communication" ; adms:status "Active" ; foaf:homepage . kgr:nasa-gesdisc a schema1:DataSource ; rdfs:label "NASA GES DISC (Goddard Earth Sciences Data and Information Services Center)" ; dcterms:created "2026-07-01T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "NASA's Goddard Earth Sciences Data and Information Services Center (GES DISC) is one of NASA's Earth Observing System Data and Information System (EOSDIS) data centers, operated at Goddard Space Flight Center. It archives and distributes Earth science data spanning atmospheric composition, the global water and energy cycles, precipitation (including the GPM and TRMM missions), and atmospheric dynamics, along with associated data access services, tools, and APIs (e.g., OPeNDAP and Earthdata access) for discovering, subsetting, and retrieving these datasets." ; dcterms:identifier "nasa-gesdisc" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:nasa-gesdisc-kg.graph, kgr:nasa-gesdisc.archive ; schema1:name "NASA GES DISC (Goddard Earth Sciences Data and Information Services Center)" ; skos:inScheme "environment" ; adms:status "Active" ; foaf:homepage . kgr:nasa-gesdisc-kg a schema1:KnowledgeGraph ; rdfs:label "NASA-GESDISC-KG" ; dcterms:created "2025-12-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The NASA Knowledge Graph Dataset is an expansive graph-based dataset designed to integrate and interconnect information about satellite datasets, scientific publications, instruments, platforms, projects, data centers, and science keywords. This knowledge graph is particularly focused on datasets managed by NASA's Distributed Active Archive Centers (DAACs), which are NASA's data repositories responsible for archiving and distributing scientific data. In addition to NASA DAACs, the graph includes datasets from 184 data providers worldwide, including various government agencies and academic institutions." ; dcterms:identifier "nasa-gesdisc-kg" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-07-01T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:nasa-gesdisc-kg.graph, kgr:nasa-gesdisc-kg.sparql, kgr:nasa-gesdisc-kg.tpf ; schema1:name "NASA-GESDISC-KG" ; doap:repository ; skos:inScheme "environment" ; adms:status "Active" ; foaf:homepage . kgr:nasa-osdr a schema1:DataSource ; rdfs:label "NASA Open Science Data Repository (OSDR) / GeneLab" ; dcterms:created "2026-07-01T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "NASA's Open Science Data Repository (OSDR), which incorporates the GeneLab data system, is a public repository that hosts spaceflight and space-relevant biological and omics experiment data. It provides curated multi-omics datasets (including transcriptomics, epigenomics, proteomics, metabolomics, and amplicon/metagenomics) from spaceflight and ground-based analog studies, along with associated experimental metadata, and offers programmatic access to these data through its APIs." ; dcterms:identifier "nasa-osdr" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:nasa-osdr.api, kgr:nasa-osdr.repository ; schema1:name "NASA Open Science Data Repository (OSDR) / GeneLab" ; skos:inScheme "genomics", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:national-directory-mental-health-facilities a schema1:DataSource ; rdfs:label "National Directory of Mental Health Treatment Facilities" ; dcterms:created "2026-07-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The National Directory of Mental Health Treatment Facilities is a directory published by the Substance Abuse and Mental Health Services Administration (SAMHSA) listing mental health treatment facilities across the United States. For each facility it records identifying and location information along with the mental health services offered. The directory is compiled primarily from SAMHSA's National Substance Use and Mental Health Services Survey and is widely reused to locate and characterize mental health treatment providers and the services they deliver." ; dcterms:identifier "national-directory-mental-health-facilities" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:national-directory-mental-health-facilities.samhsa-page, kgr:ruralkg.graph ; schema1:name "National Directory of Mental Health Treatment Facilities" ; skos:inScheme "clinical", "mental disorders", "neuroscience", "public health" ; adms:status "Active" ; foaf:homepage . kgr:nbo a schema1:Ontology ; rdfs:label "Neuro Behavior Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology of human and animal behaviours and behavioural phenotypes" ; dcterms:identifier "nbo" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:nbo.kg-bioportal, kgr:nbo.owl, kgr:sri-reference-kg.graph ; schema1:identifier "nbo" ; schema1:name "Neuro Behavior Ontology" ; doap:repository ; skos:inScheme "biological systems", "neuroscience", "phenotype" ; adms:status "Active" ; foaf:homepage . kgr:ncatsgardkg a schema1:KnowledgeGraph ; rdfs:label "NCATS GARD KG" ; dcterms:created "2025-07-11T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The NCATS GARD Knowledge Graph integrates data about rare diseases, creating a comprehensive resource for rare disease research and drug discovery. It leverages clustering and machine learning approaches to identify relationships between rare diseases and potential therapeutic targets." ; dcterms:identifier "ncatsgardkg" ; dcterms:isReferencedBy , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:ncatsgardkg.code, kgr:ncatsgardkg.graph, kgr:ncatsgardkg.raw-data ; schema1:name "NCATS GARD KG" ; doap:repository ; skos:inScheme "biomedical", "clinical", "genomics", "rare disease" ; adms:status "Active" ; foaf:homepage . kgr:ncbigene a schema1:DataSource ; rdfs:label "NCBI Gene" ; dcterms:created "2025-06-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "NCBI Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide." ; dcterms:identifier "ncbigene" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:alzkb.browser, kgr:alzkb.data, kgr:aop-db.data, kgr:aopwiki-rdf.ttl, kgr:babel.compendia, kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:biogrid.identifiers, kgr:cellmodelpassports.gene_identifiers, kgr:ctd.chem_gene_ixns, kgr:ctd.genes, kgr:ctd.genes_diseases, kgr:entrez.eutils, kgr:gencode.human.gtf, kgr:gencode.mouse.gtf, kgr:gendr.data, kgr:genecards.gene.annotations, kgr:genecards.web.interface, kgr:gtr.test_condition_gene, kgr:gtr.xml, kgr:gtrx.data, kgr:hetionet.data.edges, kgr:hetionet.data.json, kgr:hetionet.data.neo4j, kgr:hetionet.data.nodes, kgr:hetionet.hetnetpy, kgr:hetionet.neo4j, kgr:hetionet.search, kgr:kg-alzheimers.graph, kgr:kg-covid-19.graph, kgr:microbiomekg.api, kgr:mygene.api, kgr:ncatsgardkg.graph, kgr:ncbigene.gene2accession, kgr:ncbigene.gene2ensembl, kgr:ncbigene.gene2go, kgr:ncbigene.gene2pubmed, kgr:ncbigene.gene2refseq, kgr:ncbigene.gene_group, kgr:ncbigene.gene_history, kgr:ncbigene.gene_info, kgr:ncbigene.gene_neighbors, kgr:ncbigene.gene_orthologs, kgr:ncbigene.gene_refseq_uniprotkb_collab, kgr:ncbigene.gene_summary, kgr:ncbigene.mim2gene_medgen, kgr:ncbigene.search, kgr:oma.mapping.entrez, kgr:omia.gene-mappings, kgr:omim.mim2gene, kgr:pavs-kg.api, kgr:pavs-kg.portal, kgr:pavs-kg.sparql, kgr:pharmdb.graph, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:pharmkg.graph, kgr:pheknowlator.graph, kgr:primekg.graph, kgr:pubchem.substances.asn, kgr:pubchem.substances.sdf, kgr:rdf-portal.sparql.ncbi, kgr:rna-kg.kg.edges, kgr:rna-kg.kg.neo4j, kgr:rna-kg.kg.nodes, kgr:rtx-kg2.graph.edges, kgr:rtx-kg2.graph.nodes, kgr:rtx-kg2.neo4j, kgr:service-kp.trapi, kgr:spoke-okn.graph, kgr:spoke.graph, kgr:sri-reference-kg.graph, kgr:togows.rest-api, kgr:translator.translator_kg.graph, kgr:unibiomap.auxs, kgr:unibiomap.links, kgr:unibiomap.pred, kgr:unibiomap.pred.full ; schema1:identifier "ncbi-gene" ; schema1:name "NCBI Gene" ; doap:repository ; skos:inScheme "genomics" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ncbi . kgr:ncbitaxon a schema1:Ontology ; rdfs:label "NCBI organismal classification" ; dcterms:created "2025-05-28T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology representation of the NCBI organismal taxonomy" ; dcterms:identifier "ncbitaxon" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:babel.compendia, kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:chr.model.owl, kgr:ctd.chem_gene_ixns, kgr:drugmechdb.graph, kgr:eco-kg.graph, kgr:efo.obo, kgr:efo.owl, kgr:entrez.eutils, kgr:foodb.data.csv, kgr:foodb.data.json, kgr:foodb.data.mysql, kgr:foodb.data.xml, kgr:foodb.web, kgr:kg-microbe.graph.biomedical, kgr:kg-microbe.graph.biomedical-function, kgr:kg-microbe.graph.core, kgr:kg-microbe.graph.function, kgr:kg-microbe.graph.raw, kgr:mechreponet.kg, kgr:mediadive.portal, kgr:mediadive.rest_api, kgr:mediadive.sparql, kgr:metabokg.graph, kgr:metabokg.schema, kgr:microbiomekg.api, kgr:micromap.api, kgr:ncbitaxon.json, kgr:ncbitaxon.obo, kgr:ncbitaxon.owl, kgr:ncbitaxon.subsets.taxslim-disjoint-over-in-taxon.owl, kgr:ncbitaxon.subsets.taxslim.owl, kgr:np-kg.graph.networkx, kgr:np-kg.graph.tsv, kgr:orkg.dump, kgr:rtx-kg2.graph.edges, kgr:rtx-kg2.graph.nodes, kgr:rtx-kg2.neo4j, kgr:spoke-okn.graph, kgr:spoke.graph, kgr:sri-reference-kg.graph ; schema1:identifier "ncbi-taxon" ; schema1:name "NCBI organismal classification" ; doap:repository ; skos:inScheme "organisms", "taxonomy" ; adms:status "Active" ; foaf:homepage . kgr:nci60 a schema1:DataSource ; rdfs:label "NCI-60 Human Tumor Cell Lines Screen" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The NCI-60 Human Tumor Cell Lines Screen is the National Cancer Institute Developmental Therapeutics Program's panel of 60 human cancer cell lines from nine tissue types (leukemia, melanoma and cancers of the lung, colon, brain, ovary, breast, prostate and kidney). Compounds identified by NSC number have been screened against the panel since 1990. DTP publishes growth inhibition endpoints (GI50, TGI, LC50, IC50), full concentration/response data and one-dose prescreen data for public NSC compounds, reported per experiment, with 71 current and former NCI-60 cell lines making up most of the data." ; dcterms:identifier "nci60" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:cellminer.cellminercdb, kgr:cellminer.downloads, kgr:cellminer.drug-raw, kgr:cellminer.drug-zscore, kgr:cellminer.portal, kgr:date.archive, kgr:nci60.doseresp, kgr:nci60.download-docs, kgr:nci60.gi50, kgr:nci60.ic50, kgr:nci60.lc50, kgr:nci60.oneconc, kgr:nci60.portal, kgr:nci60.public-nscs, kgr:nci60.tgi ; schema1:name "NCI-60 Human Tumor Cell Lines Screen" ; skos:altLabel "NCI 60 cell line screen", "NCI-60", "NCI-60 Human Tumor Cell Lines Screen", "NCI60" ; skos:inScheme "biomedical", "cancer", "drug discovery", "high-throughput screening", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:ncipidkg a schema1:KnowledgeGraph ; rdfs:label "NCI-PID 2.0 KG" ; dcterms:created "2026-03-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The NCI-PID 2.0 Knowledge Graph converts NCI Pathway Interaction Database version 2.0 networks into RDF, capturing protein interactions, signaling pathways, and post-translational modifications enriched with INDRA evidence metadata." ; dcterms:identifier "ncipidkg" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ncipidkg.graph.ttl, kgr:ncipidkg.sparql, kgr:ncipidkg.tpf ; schema1:name "NCI-PID 2.0 KG" ; skos:inScheme "biomedical", "pathways", "signal transduction" ; adms:status "Active" ; foaf:homepage . kgr:ncit a schema1:Ontology ; rdfs:label "NCI Thesaurus OBO Edition" ; dcterms:created "2025-06-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "NCI Thesaurus (NCIt)is a reference terminology that includes broad coverage of the cancer domain, including cancer related diseases, findings and abnormalities. The NCIt OBO Edition aims to increase integration of the NCIt with OBO Library ontologies. NCIt OBO Edition releases should be considered experimental." ; dcterms:identifier "ncit" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:babel.compendia, kgr:cellmodelpassports.model_list, kgr:efo.obo, kgr:efo.owl, kgr:genecards.web.interface, kgr:medgen.csv, kgr:medgen.mgconso, kgr:medgen.mgdef, kgr:medgen.mgrel, kgr:medgen.mgsat, kgr:medgen.names, kgr:metabokg.graph, kgr:metabokg.schema, kgr:microbiomekg.api, kgr:ncit.obo, kgr:ncit.owl, kgr:orkg.dump, kgr:pavs-kg.api, kgr:pavs-kg.phenopackets, kgr:pavs-kg.portal, kgr:pavs-kg.sparql, kgr:sri-reference-kg.graph ; schema1:identifier "ncit" ; schema1:name "NCI Thesaurus OBO Edition" ; doap:repository ; skos:inScheme "biomedical", "cancer" ; adms:status "Active" ; foaf:homepage . kgr:ncro a schema1:Ontology ; rdfs:label "Non-Coding RNA Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology for non-coding RNA, both of biological origin, and engineered." ; dcterms:identifier "ncro" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ncro.dev.ncro.owl, kgr:ncro.kg-bioportal ; schema1:name "Non-Coding RNA Ontology" ; doap:repository ; skos:inScheme "general", "genomics", "non-coding RNA" ; adms:status "Active" ; foaf:homepage . kgr:ndcd a schema1:DataSource ; rdfs:label "National Drug Code Directory" ; dcterms:created "2025-11-19T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The FDA National Drug Code Directory is a comprehensive database maintained by the U.S. Food and Drug Administration containing information about finished drug products, unfinished drugs, and compounded drug products. Drug establishments are required to provide FDA with current lists of all drugs using unique three-segment National Drug Code (NDC) numbers. The directory includes prescription and over-the-counter drugs, approved and unapproved drugs, and repackaged and relabeled drugs. The database is updated daily and provides essential drug identification and regulatory information for healthcare professionals, researchers, and regulatory compliance." ; dcterms:identifier "ndcd" ; dcterms:license ; dcterms:modified "2026-10-03T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:athena.vocabularies, kgr:dailymed.spl_files, kgr:mychem.api, kgr:ndcd.api, kgr:ndcd.excel, kgr:ndcd.search, kgr:ndcd.text, kgr:openfda.apis, kgr:openfda.downloads ; schema1:identifier "ndcd" ; schema1:name "National Drug Code Directory" ; skos:altLabel "NDC", "NDC Directory", "NDCD" ; skos:inScheme "biomedical", "clinical", "drug discovery", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:nde a schema1:KnowledgeGraph ; rdfs:label "NIAID Data Ecosystem KG" ; dcterms:created "2025-12-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The nde (NIAID Data Ecosystem) KG contains infectious and immune-mediated disease datasets. These include datasets from NIAID-funded repositories as well as globally-relevant infectious and immune-mediated disease (IID) repositories from NIH and beyond. The datasets include -omics data, clinical data, epidemiological data, pathogen-host interaction data, flow cytometry, and imaging." ; dcterms:identifier "nde" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:nde.graph, kgr:nde.sparql, kgr:nde.tpf ; schema1:name "NIAID Data Ecosystem KG" ; doap:repository ; skos:inScheme "biomedical", "immunology", "infectious disease" ; adms:status "Active" ; foaf:homepage . kgr:ndfrt a schema1:DataSource ; rdfs:label "Veterans Health Administration National Drug File" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Veterans Health Administration National Drug File (VANDF) is a comprehensive drug terminology containing approximately 27,921 clinical drugs, 8,058 ingredients, and 578 drug classes. It is maintained by the Department of Veterans Affairs and distributed through UMLS and RxNorm." ; dcterms:identifier "ndfrt" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:med-rt.core_dts, kgr:med-rt.core_xml, kgr:ndfrt.kg-bioportal, kgr:ndfrt.rxnorm, kgr:ndfrt.umls, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv ; schema1:identifier "ndfrt" ; schema1:name "Veterans Health Administration National Drug File" ; skos:altLabel "NDF-RT", "National Drug File - Reference Terminology", "VA National Drug File", "VANDF" ; skos:inScheme "clinical", "clinical coding", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:neo a schema1:Resource ; rdfs:label "Noctua Entity Ontology" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "This repository contains classes required by Noctua/Minerva for representing entities that are object of 'enabled by' relations, and similar molecular relationships. This includes: genes, protein (gene-level generic proteins and isoforms), functional RNAs, and complexes. These are represented as ontology classes, although NEO is not really an ontology in a conventional sense: there is no hierarchy, it is organized as a largely flat list." ; dcterms:identifier "neo" ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:neo.model, kgr:neo.obo ; schema1:name "Noctua Entity Ontology" ; doap:repository ; skos:inScheme "biological systems", "genomics", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:netpath a schema1:DataSource ; rdfs:label "NetPath" ; dcterms:created "2026-06-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "NetPath is a public, manually curated resource of human signal transduction pathways. It provides detailed maps of immune and cancer signaling pathways, annotating thousands of reactions and transcriptionally regulated genes drawn from thousands of published articles. NetPath data is distributed in community standard formats including BioPAX, PSI-MI, and SBML, and is widely reused by pathway aggregators. The project is no longer actively maintained." ; dcterms:identifier "netpath" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:netpath.pathways, kgr:pathwaycommons.biopax, kgr:pathwaycommons.downloads, kgr:pathwaycommons.gmt, kgr:pathwaycommons.sif, kgr:pathwaycommons.txt ; schema1:name "NetPath" ; skos:altLabel "NetPath" ; skos:inScheme "immunology", "pathways", "signal transduction", "systems biology" ; adms:status "Orphaned" ; foaf:homepage . kgr:nextprot a schema1:DataSource ; rdfs:label "neXtProt" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "neXtProt is a human protein knowledge platform that integrates manually curated UniProtKB/Swiss-Prot records with proteomics, genetic variation, expression, interaction, localization, and functional annotations." ; dcterms:identifier "nextprot" ; dcterms:isReferencedBy , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:genecards.web.interface, kgr:iptmnet.ptm, kgr:nextprot.api, kgr:nextprot.downloads, kgr:nextprot.portal, kgr:nextprot.sparql ; schema1:name "neXtProt" ; skos:inScheme "genomics", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:ngbo a schema1:Ontology ; rdfs:label "Next Generation Biobanking Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Next Generation Biobanking Ontology (NGBO) is an open application ontology representing contextual data about omics digital assets in biobank. The ontology focuses on capturing the information about three main activities: wet bench analysis used to generate omics data, bioinformatics analysis used to analyze and interpret data, and data management." ; dcterms:identifier "ngbo" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ngbo.kg-bioportal, kgr:ngbo.owl ; schema1:name "Next Generation Biobanking Ontology" ; doap:repository ; skos:inScheme "biomedical", "general", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:ngdc a schema1:Aggregator ; rdfs:label "National Genomics Data Center" ; dcterms:created "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The National Genomics Data Center (NGDC), part of the China National Center for Bioinformation (CNCB) and hosted by the Beijing Institute of Genomics, Chinese Academy of Sciences, runs a family of archival and curated data resources for genomic and other omics data. Its core archives include the Genome Sequence Archive (GSA) for raw sequence reads and its controlled-access counterpart GSA-Human, the Genome Warehouse (GWH) for genome assemblies and annotations, the Genome Variation Map (GVM), and BioProject and BioSample databases for study and sample metadata. NGDC also hosts many curated knowledgebases (such as LncBook) and Database Commons, a catalog of biological databases worldwide. Resources are described in an annual Nucleic Acids Research database issue paper." ; dcterms:identifier "ngdc" ; dcterms:isReferencedBy , , , , ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ngdc.bioproject, kgr:ngdc.biosample, kgr:ngdc.databasecommons, kgr:ngdc.downloads, kgr:ngdc.gsa, kgr:ngdc.gsa-docs, kgr:ngdc.gsa-human, kgr:ngdc.gvm, kgr:ngdc.gwh, kgr:ngdc.portal ; schema1:name "National Genomics Data Center" ; skos:altLabel "BIG Data Center", "BIGD", "CNCB-NGDC", "NGDC" ; skos:inScheme "biomedical", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:nhpn a schema1:DataSource ; rdfs:label "National Highway Planning Network" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The National Highway Planning Network (NHPN) is a geospatial network database of line features representing just over 450,000 miles of highways across the United States, maintained by the Federal Highway Administration (FHWA) of the U.S. Department of Transportation. It includes the National Highway System (NHS), the Interstate System, the Strategic Highway Network (STRAHNET), NHS Intermodal Connectors, and all roads classified as principal or rural minor arterial. The data is assembled from road networks submitted by State Departments of Transportation as part of their Highway Performance Monitoring System (HPMS) submissions. NHPN is used as an upstream geospatial source for KnowWhereGraph." ; dcterms:identifier "nhpn" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:knowwheregraph.graph, kgr:nhpn.geojson, kgr:nhpn.shp ; schema1:name "National Highway Planning Network" ; skos:inScheme "environment", "geographic information systems", "information technology", "transportation" ; adms:status "Active" ; foaf:homepage . kgr:nibrs a schema1:DataSource ; rdfs:label "National Incident-Based Reporting System" ; dcterms:created "2026-07-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The National Incident-Based Reporting System (NIBRS) is the crime data collection program of the FBI Uniform Crime Reporting (UCR) Program, administered by the Criminal Justice Information Services (CJIS) Division. NIBRS captures detailed, incident-level data on criminal offenses reported by participating law enforcement agencies, including information on offenses, offenders, victims, arrestees, and property. Each incident is described through a standardized set of data elements and segments. NIBRS data are widely reused for justice and public safety analysis and are published through the FBI Crime Data Explorer." ; dcterms:identifier "nibrs" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:nibrs.cde, kgr:ruralkg.graph ; schema1:name "National Incident-Based Reporting System" ; skos:inScheme "criminal justice", "public health" ; adms:status "Active" ; foaf:homepage . kgr:nif_cell a schema1:Ontology ; rdfs:label "NIF Cell" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Neuronal cell types" ; dcterms:identifier "nif_cell" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:nif_cell.ttl ; schema1:name "NIF Cell" ; skos:inScheme "anatomy and development", "biological systems", "cell biology", "neuroscience" ; adms:status "Inactive" ; foaf:homepage . kgr:nif_dysfunction a schema1:Ontology ; rdfs:label "NIF Dysfunction" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Description unavailable." ; dcterms:identifier "nif_dysfunction" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:nif_dysfunction.ttl ; schema1:name "NIF Dysfunction" ; skos:inScheme "biomedical", "neuroscience" ; adms:status "Inactive" ; foaf:homepage . kgr:nif_grossanatomy a schema1:Ontology ; rdfs:label "NIF Gross Anatomy" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Description unavailable." ; dcterms:identifier "nif_grossanatomy" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:nif_grossanatomy.ttl ; schema1:name "NIF Gross Anatomy" ; skos:inScheme "anatomy and development", "neuroscience" ; adms:status "Inactive" ; foaf:homepage . kgr:nifc a schema1:DataSource ; rdfs:label "National Interagency Fire Center Open Data" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "NIFC Open Data is the public geospatial data hub of the National Interagency Fire Center, the U.S. interagency coordination center for wildland fire support based in Boise, Idaho. Hosted on an Esri ArcGIS Open Data portal, it publishes authoritative wildfire data including current and historical incident locations, fire perimeters, and related operational layers from the Wildland Fire Interagency Geospatial Services (WFIGS) program. The data serve as an upstream source for downstream knowledge graphs such as KnowWhereGraph." ; dcterms:identifier "nifc" ; dcterms:license "US federal government public domain (no copyright)" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:knowwheregraph.graph, kgr:nifc.fire-perimeters, kgr:nifc.portal ; schema1:name "National Interagency Fire Center Open Data" ; skos:inScheme "environment", "wildfires" ; adms:status "Active" ; foaf:homepage . kgr:nih-era a schema1:DataSource ; rdfs:label "NIH eRA (electronic Research Administration)" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "eRA (electronic Research Administration) is the NIH system for managing the grants lifecycle, from application receipt and peer review through award, post-award reporting and closeout, for NIH and other federal agencies. It combines IMPAC II, the internal system of record for NIH grant applications and awards since 2002, with eRA Commons, the external interface for applicants, recipients and reviewers. eRA itself is access-controlled, but its data feed public resources such as NIH RePORTER and the ExPORTER bulk files." ; dcterms:identifier "nih-era" ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:nih-era.assist, kgr:nih-era.commons, kgr:nih-era.help, kgr:nih-era.reporting-docs, kgr:nihreporter.abstracts, kgr:nihreporter.api, kgr:nihreporter.clinicalstudies, kgr:nihreporter.crisp, kgr:nihreporter.linktables, kgr:nihreporter.patents, kgr:nihreporter.portal, kgr:nihreporter.projects, kgr:nihreporter.publications ; schema1:name "NIH eRA (electronic Research Administration)" ; skos:altLabel "IMPAC II", "NIH eRA", "eRA", "eRA Commons", "electronic Research Administration" ; skos:inScheme "biomedical", "research funding" ; adms:status "Active" ; foaf:homepage . kgr:nihreporter a schema1:DataSource ; rdfs:label "NIH Reporter" ; dcterms:created "2025-07-20T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "NIH Reporter (RePORTER) is a searchable repository of federally funded biomedical research projects, covering NIH intramural and extramural research as well as projects funded by CDC, AHRQ, HRSA, ACF and the VA. It links projects (from fiscal year 1985) to publications (from 1980), patents and clinical studies, and offers a web interface, a public REST API and bulk ExPORTER downloads refreshed weekly." ; dcterms:identifier "nihreporter" ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:indra.cogex.code, kgr:nih-era.reporting-docs, kgr:nihreporter.abstracts, kgr:nihreporter.api, kgr:nihreporter.clinicalstudies, kgr:nihreporter.crisp, kgr:nihreporter.linktables, kgr:nihreporter.patents, kgr:nihreporter.portal, kgr:nihreporter.projects, kgr:nihreporter.publications, kgr:obo-db-ingest.nihreporter.project.json, kgr:obo-db-ingest.nihreporter.project.obo, kgr:obo-db-ingest.nihreporter.project.owl, kgr:obo-db-ingest.nihreporter.project.tsv, kgr:stitch.api, kgr:stitch.downloads, kgr:stitch.portal ; schema1:name "NIH Reporter" ; skos:inScheme "biomedical", "clinical" ; adms:status "Active" ; foaf:homepage . kgr:nij a schema1:DataSource ; rdfs:label "National Institute of Justice" ; dcterms:created "2026-07-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The National Institute of Justice (NIJ) is the research, development, and evaluation agency of the U.S. Department of Justice, Office of Justice Programs. NIJ produces and disseminates data, research findings, and publications on crime, victimization, firearms violence, forensic science, and community safety. As a partner in the NSF Proto-OKN program, NIJ contributed the \"Data on Nonfatal Firearms Injuries\" use case motivating the integration of criminal victimization and neighborhood-level data." ; dcterms:identifier "nij" ; dcterms:license "U.S. Government Work (public domain)" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:nij.publications, kgr:nikg.graph ; schema1:name "National Institute of Justice" ; skos:inScheme "criminal justice", "public health" ; adms:status "Active" ; foaf:homepage . kgr:nikg a schema1:KnowledgeGraph ; rdfs:label "Neighborhood Information KG" ; dcterms:created "2025-12-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Neighborhood Information KG (NIKG) is a knowledge graph warehouse for neighborhood information." ; dcterms:identifier "nikg" ; dcterms:license "U.S. Government Work (public domain)" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:nikg.graph, kgr:nikg.sparql, kgr:nikg.tpf ; schema1:name "Neighborhood Information KG" ; skos:inScheme "public health", "social determinants of health" ; adms:status "Active" ; foaf:homepage . kgr:nlm a schema1:DataSource ; rdfs:label "National Library of Medicine" ; dcterms:created "2026-02-26T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The National Library of Medicine is the world's largest biomedical library and a national resource for health professionals, scientists, and the public." ; dcterms:identifier "nlm" ; dcterms:license ; dcterms:modified "2026-05-30T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:nlm.portal, kgr:obo-db-ingest.nlm.json, kgr:obo-db-ingest.nlm.obo, kgr:obo-db-ingest.nlm.owl, kgr:obo-db-ingest.nlm.publisher.json, kgr:obo-db-ingest.nlm.publisher.obo, kgr:obo-db-ingest.nlm.publisher.owl, kgr:obo-db-ingest.nlm.publisher.sssom.tsv, kgr:obo-db-ingest.nlm.publisher.tsv, kgr:obo-db-ingest.nlm.sssom.tsv, kgr:obo-db-ingest.nlm.tsv ; schema1:name "National Library of Medicine" ; skos:inScheme "biomedical", "literature" ; adms:status "Active" ; foaf:homepage . kgr:nlm-ckn a schema1:KnowledgeGraph ; rdfs:label "NLM-CKN" ; dcterms:created "2025-04-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The NLM Cell Knowledge Network, a knowledge graph that contains knowledge about cellular phenotypes (cell types and cell states) that has been gathered through single cell technologies and related experiments. NLM-CKN is populated using validated computational analysis pipelines and natural language processing of scientific literature and integrated with other public sources of relevant knowledge about genes, anatomical structures, diseases, and drugs." ; dcterms:identifier "nlm-ckn" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:nlm-ckn.etl, kgr:nlm-ckn.graph, kgr:nlm-ckn.harvester, kgr:nlm-ckn.nsforest-qc, kgr:nlm-ckn.schema, kgr:nlm-ckn.scsilhouette, kgr:nlm-ckn.ui ; schema1:name "NLM-CKN" ; doap:repository ; skos:inScheme "biological systems", "biomedical", "cell biology", "phenotype", "single-cell analysis" ; adms:status "Active" ; foaf:homepage . kgr:nmr a schema1:Ontology ; rdfs:label "NMR-instrument specific component of metabolomics investigations" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Descriptors relevant to the experimental conditions of the Nuclear Magnetic Resonance (NMR) component in a metabolomics investigation." ; dcterms:identifier "nmr" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:nmr.kg-bioportal, kgr:nmr.owl ; schema1:name "NMR-instrument specific component of metabolomics investigations" ; skos:inScheme "chemistry and biochemistry", "general", "metabolomics" ; adms:status "Inactive" ; foaf:homepage . kgr:noaa-hms a schema1:DataSource ; rdfs:label "NOAA Hazard Mapping System Fire and Smoke Product" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The NOAA Hazard Mapping System (HMS) Fire and Smoke Product is a satellite-derived analysis of fire locations and smoke plumes over North America, produced operationally by NOAA's National Environmental Satellite, Data, and Information Service (NESDIS) Office of Satellite and Product Operations (OSPO). Trained analysts integrate automated fire detections from geostationary (GOES) and polar-orbiting satellites with imagery to manually quality-control fire points and to delineate smoke plumes by density. The daily products are distributed as fire point and smoke polygon datasets in Shapefile and KML formats. HMS data are used to monitor wildfire activity and air-quality-relevant smoke transport across the United States, Canada, and Mexico." ; dcterms:identifier "noaa-hms" ; dcterms:license "U.S. Government Work (public domain)" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:knowwheregraph.graph, kgr:noaa-hms.fire-points, kgr:noaa-hms.smoke-polygons ; schema1:name "NOAA Hazard Mapping System Fire and Smoke Product" ; skos:inScheme "air pollution", "environment", "public health", "wildfires" ; adms:status "Active" ; foaf:homepage . kgr:noaa-ncei a schema1:DataSource ; rdfs:label "NOAA National Centers for Environmental Information" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The NOAA National Centers for Environmental Information (NCEI) is the U.S. government's archive and steward for environmental data, hosting one of the most significant collections of oceanic, atmospheric, climate, weather, and geophysical data on Earth. NCEI preserves and provides access to records including the Storm Events Database, historical hurricane and tropical cyclone tracks (IBTrACS), climate summaries, and a broad range of monitoring products. These data are an upstream source for the KnowWhereGraph project." ; dcterms:identifier "noaa-ncei" ; dcterms:license "US Government Work (public domain)" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:knowwheregraph.graph, kgr:noaa-ncei.data-search, kgr:noaa-ncei.ibtracs, kgr:noaa-ncei.storm-events ; schema1:name "NOAA National Centers for Environmental Information" ; skos:inScheme "climate", "environment", "public health" ; adms:status "Active" ; foaf:homepage . kgr:noaa-nwm a schema1:DataSource ; rdfs:label "NOAA National Water Model (NWM)" ; dcterms:created "2026-07-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The NOAA National Water Model (NWM) is an operational hydrologic modeling framework run by the NOAA/NWS Office of Water Prediction that produces continuous, gridded streamflow and hydrologic forecasts for the continental United States. The NWM simulates and forecasts water in streams and rivers on the NHDPlus reach network, delivering analysis-and-assimilation, short-range, medium-range, and long-range forecasts used for flood prediction and water resource applications. The Urban Flooding Open Knowledge Network (UF-OKN) uses NWM streamflow forecasts as the operational, national-scale forecast source that drives its real-time flood-risk information." ; dcterms:identifier "noaa-nwm" ; dcterms:license "U.S. federal government public domain" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:noaa-nwm.landing, kgr:uf-okn.graph ; schema1:name "NOAA National Water Model (NWM)" ; skos:inScheme "environment", "information technology", "water resources" ; adms:status "Active" ; foaf:homepage . kgr:node-normalizer a schema1:Aggregator ; rdfs:label "SRI Node Normalizer" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The SRI Node Normalizer (NodeNorm) is an NCATS Biomedical Data Translator utility service from the Standards and Reference Implementation (SRI) team, built and hosted by RENCI. Given one or more CURIEs, it returns the preferred CURIE for each entity, all known equivalent identifiers, a preferred label and the entity's Biolink Model semantic types. Its data are the cliques of equivalent identifiers built by Babel from many biomedical vocabularies and databases. Translator knowledge providers use it to normalize node identifiers in their graphs, and Translator KGX releases record the Node Normalizer version used to build them." ; dcterms:identifier "node-normalizer" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:kg-jensenlab-diseases.edges.kgx, kgr:kg-jensenlab-diseases.edges.trapi, kgr:kg-jensenlab-diseases.nodes.kgx, kgr:node-normalizer.api, kgr:node-normalizer.api.translator, kgr:node-normalizer.code, kgr:node-normalizer.docs, kgr:translator.alliance.graph, kgr:translator.bgee.graph, kgr:translator.bindingdb.graph, kgr:translator.chembl.graph, kgr:translator.cohd.graph, kgr:translator.ctd.graph, kgr:translator.ctkp.graph, kgr:translator.dakp.graph, kgr:translator.dgidb.graph, kgr:translator.diseases.graph, kgr:translator.drug_rep_hub.graph, kgr:translator.drugcentral.graph, kgr:translator.gene2phenotype.graph, kgr:translator.geneticskp.graph, kgr:translator.go_cam.graph, kgr:translator.goa.graph, kgr:translator.gtopdb.graph, kgr:translator.hpoa.graph, kgr:translator.icees.graph, kgr:translator.intact.graph, kgr:translator.panther.graph, kgr:translator.pathbank.graph, kgr:translator.semmeddb.graph, kgr:translator.sider.graph, kgr:translator.signor.graph, kgr:translator.tmkp.graph, kgr:translator.translator_kg.graph, kgr:translator.ttd.graph, kgr:translator.ubergraph.graph ; schema1:identifier "sri-node-normalizer" ; schema1:name "SRI Node Normalizer" ; doap:repository ; skos:altLabel "Node Normalization", "Node Normalizer", "NodeNorm" ; skos:inScheme "biomedical", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:node-omics a schema1:DataSource ; rdfs:label "National Omics Data Encyclopedia" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "NODE (National Omics Data Encyclopedia) is a Chinese repository for submitting, archiving and sharing multi-omics data, including sequencing, proteomics, metabolomics and associated metadata, run by the Bio-Med Big Data Center (BIOSINO) of the Shanghai Institute of Nutrition and Health, Chinese Academy of Sciences. Data are organized as projects (OEP accessions), experiments, samples, runs and analyses, and each item is public, restricted (searchable, with download on request to the owner) or private. NODE is indexed by OmicsDI." ; dcterms:identifier "node-omics" ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:node-omics.browse, kgr:node-omics.help, kgr:node-omics.portal, kgr:node-omics.sftp, kgr:node-omics.statistics, kgr:omicsdi.api, kgr:omicsdi.portal ; schema1:name "National Omics Data Encyclopedia" ; skos:altLabel "NODE", "National Omics Data Encyclopedia" ; skos:inScheme "biomedical", "chemistry and biochemistry", "genomics", "metabolomics", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:nomen a schema1:Ontology ; rdfs:label "NOMEN - A nomenclatural ontology for biological names" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "NOMEN is a nomenclatural ontology for biological names (not concepts). It encodes the goverened rules of nomenclature." ; dcterms:identifier "nomen" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:nomen.kg-bioportal, kgr:nomen.owl ; schema1:name "NOMEN - A nomenclatural ontology for biological names" ; doap:repository ; skos:inScheme "information technology", "organisms", "taxonomy" ; adms:status "Active" ; foaf:homepage . kgr:noncode a schema1:DataSource ; rdfs:label "NONCODE" ; dcterms:created "2025-09-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A comprehensive database dedicated to long non-coding RNA (lncRNA) annotation in animals and plants, providing systematic nomenclature, sequence information, genome location, expression profiles, functional predictions, and conservation analysis across 39 species (16 animals and 23 plants)" ; dcterms:identifier "noncode" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:genecards.web.interface, kgr:lncrnalyzr.graph, kgr:noncode.blast, kgr:noncode.browse, kgr:noncode.conservation, kgr:noncode.disease, kgr:noncode.download, kgr:noncode.function, kgr:noncode.genome-browser, kgr:noncode.id-conversion, kgr:noncode.portal, kgr:noncode.search, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db ; schema1:name "NONCODE" ; skos:altLabel "NONCODE 2021", "NONCODE v6.0", "NONCODEV6" ; skos:inScheme "genomics", "non-coding RNA" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:institute-of-biophysics-chinese-academy-of-science . kgr:np-kg a schema1:KnowledgeGraph ; rdfs:label "NP-KG" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "NP-KG is a graph framework that creates a biomedical knowledge graph to identify and generate mechanistic hypotheses for pharmacokinetic natural product-drug interactions (NPDIs)." ; dcterms:identifier "np-kg" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:np-kg.graph.networkx, kgr:np-kg.graph.tsv ; schema1:name "NP-KG" ; doap:repository ; skos:inScheme "biomedical", "chemistry and biochemistry", "drug discovery", "drug interactions", "natural products", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:npass a schema1:DataSource ; rdfs:label "NPASS" ; dcterms:created "2026-02-26T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "NPASS is a natural products database that integrates species sources, chemical structures, biological targets, quantitative activity data, and ADME-toxicity information." ; dcterms:identifier "npass" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:npass.portal, kgr:obo-db-ingest.npass.json, kgr:obo-db-ingest.npass.obo, kgr:obo-db-ingest.npass.owl, kgr:obo-db-ingest.npass.sssom.tsv, kgr:obo-db-ingest.npass.tsv, kgr:oregano.graph ; schema1:name "NPASS" ; skos:inScheme "chemistry and biochemistry", "drug discovery", "natural products" ; adms:status "Active" ; foaf:homepage . kgr:npm a schema1:DataSource ; rdfs:label "npm registry" ; dcterms:created "2026-07-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The npm registry (Node Package Manager) is the public package registry for the JavaScript and Node.js ecosystem, hosting metadata and distributable artifacts for millions of open-source packages." ; dcterms:identifier "npm" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:npm.website, kgr:securechainkg.graph ; schema1:name "npm registry" ; skos:inScheme "information technology", "software" ; adms:status "Active" ; foaf:homepage . kgr:npo a schema1:Ontology ; rdfs:label "Neuron Phenotype Ontology" ; dcterms:created "2025-06-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Neuron Phenotype Ontology (NPO) is a FAIR ontology-based data model for representing complex cellular phenotypes of neurons. It characterizes neuron types as bundles of normalized phenotypic properties across multiple dimensions including species, anatomical location, morphology, molecular constituents, electrophysiology, connectivity, and circuit roles. The NPO provides a standardized and automatable approach for naming cell types and normalizing their constituent phenotypes using identifiers from community ontologies, enabling interoperability between different neuron naming schemes and classification systems." ; dcterms:identifier "npo" ; dcterms:isReferencedBy ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:npo.kg-bioportal, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:name "Neuron Phenotype Ontology" ; skos:altLabel "NPO", "NPOKB" ; skos:inScheme "neuroscience" ; adms:status "Active" ; foaf:homepage . kgr:nsduh a schema1:DataSource ; rdfs:label "National Survey on Drug Use and Health" ; dcterms:created "2026-07-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The National Survey on Drug Use and Health (NSDUH) is an annual survey sponsored by the Substance Abuse and Mental Health Services Administration (SAMHSA) that provides nationally representative data on the use of tobacco, alcohol, and illicit drugs, as well as substance use disorders, mental health, and related behaviors among the US civilian, noninstitutionalized population. NSDUH survey variables, answer options, and substance categories are widely reused for public health and behavioral health analysis." ; dcterms:identifier "nsduh" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:nsduh.samhsa-page, kgr:ruralkg.graph ; schema1:name "National Survey on Drug Use and Health" ; skos:inScheme "mental disorders", "neuroscience", "public health" ; adms:status "Active" ; foaf:homepage . kgr:nsides a schema1:DataSource ; rdfs:label "nSIDES" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "nSIDES is a comprehensive collection of drug side effect and drug interaction resources developed by the Tatonetti Lab. It includes OnSIDES (adverse events from drug labels), KidSIDES (pediatric drug safety signals), AwareDX (sex-specific adverse drug effects), OffSIDES (off-label side effects), TwoSIDES (drug-drug interactions), and ManySIDES (combinations of 3+ drugs)." ; dcterms:identifier "nsides" ; dcterms:isReferencedBy , , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:nsides.awaredx, kgr:nsides.kidsides, kgr:nsides.kidsides.code, kgr:nsides.onsides, kgr:nsides.onsides.code, kgr:nsides.pdsportal ; schema1:identifier "nsides" ; schema1:name "nSIDES" ; doap:repository ; skos:altLabel "nSIDES" ; skos:inScheme "biomedical", "drug discovery", "pharmacology", "pharmacovigilance", "precision medicine" ; adms:status "Active" ; foaf:homepage . kgr:nsrr a schema1:DataSource ; rdfs:label "National Sleep Research Resource" ; dcterms:created "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The National Sleep Research Resource (NSRR) is an NHLBI-supported repository, launched in April 2014, that shares de-identified sleep data from cohort studies, clinical trials and other sources. It hosts tens of thousands of polysomnography and actigraphy recordings (mostly as EDF signal files with annotations) plus questionnaire, demographic and clinical covariate data from more than 50 datasets, such as the Sleep Heart Health Study, MESA Sleep, MrOS Sleep and CHAT. Core variables are harmonized across datasets, and data are downloaded after an approved data access request. NSRR is integrating its data into NHLBI BioData Catalyst." ; dcterms:identifier "nsrr" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:nsrr.cross-dataset-mapping, kgr:nsrr.data-request, kgr:nsrr.dataset-discovery, kgr:nsrr.datasets, kgr:nsrr.docs, kgr:nsrr.edf-editor-translator, kgr:nsrr.edf-viewer, kgr:nsrr.gem, kgr:nsrr.harmonization, kgr:nsrr.luna, kgr:nsrr.portal, kgr:nsrr.r-package, kgr:nsrr.tools ; schema1:name "National Sleep Research Resource" ; doap:repository ; skos:altLabel "NSRR", "sleepdata.org" ; skos:inScheme "biomedical", "clinical" ; adms:status "Active" ; foaf:homepage . kgr:nuget a schema1:DataSource ; rdfs:label "NuGet Gallery" ; dcterms:created "2026-07-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "NuGet is the package registry for the .NET ecosystem, hosting metadata and distributable artifacts for .NET libraries and tools." ; dcterms:identifier "nuget" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:nuget.website, kgr:securechainkg.graph ; schema1:name "NuGet Gallery" ; skos:inScheme "information technology", "software" ; adms:status "Active" ; foaf:homepage . kgr:oae a schema1:Ontology ; rdfs:label "Ontology of Adverse Events" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A biomedical ontology in the domain of adverse events" ; dcterms:identifier "oae" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:np-kg.graph.networkx, kgr:np-kg.graph.tsv, kgr:oae.owl ; schema1:name "Ontology of Adverse Events" ; doap:repository ; skos:inScheme "biomedical", "pharmacology", "pharmacovigilance" ; adms:status "Active" ; foaf:homepage . kgr:oarcs a schema1:Ontology ; rdfs:label "Ontology of Arthropod Circulatory Systems" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "OArCS is an ontology describing the Arthropod ciruclatory system." ; dcterms:identifier "oarcs" ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:oarcs.kg-bioportal, kgr:oarcs.owl ; schema1:name "Ontology of Arthropod Circulatory Systems" ; doap:repository ; skos:inScheme "anatomy and development" ; adms:status "Active" ; foaf:homepage . kgr:oard a schema1:DataSource ; rdfs:label "OARD (Open Annotations for Rare Diseases)" ; dcterms:created "2026-07-01T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "OARD (Open Annotations for Rare Diseases) is a web resource and RESTful API that provides data-driven associations between rare diseases and their phenotypes and co-morbidities, mined from large-scale de-identified electronic health records. Developed by the Weng Lab in the Department of Biomedical Informatics at Columbia University, OARD is built from more than 10 million de-identified patient records drawn from Columbia University Irving Medical Center (CUIMC) and Children's Hospital of Philadelphia (CHOP). Only aggregate frequency and co-occurrence statistics (no individual-level data) are stored, and disease-phenotype association analyses are computed on the fly per query. Diseases are represented using Mondo, OMIM, and Orphanet identifiers and phenotypes using the Human Phenotype Ontology (HPO), with clinical concepts grounded in the OMOP common data model." ; dcterms:identifier "oard" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:oard.api ; schema1:name "OARD (Open Annotations for Rare Diseases)" ; doap:repository ; skos:inScheme "biomedical", "clinical", "electronic health records", "rare disease" ; adms:status "Active" ; foaf:homepage . kgr:oard-kg a schema1:KnowledgeGraph ; rdfs:label "Open Annotations for Rare Diseases (OARD) Knowledge Graph" ; dcterms:created "2026-03-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Clinical associations between rare diseases and phenotypes derived from electronic health records" ; dcterms:identifier "oard-kg" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:oard-kg.sparql, kgr:oard-kg.tpf ; schema1:name "Open Annotations for Rare Diseases (OARD) Knowledge Graph" ; skos:inScheme "biomedical", "clinical", "electronic health records", "rare disease" ; adms:status "Active" ; foaf:homepage . kgr:oba a schema1:Ontology ; rdfs:label "Ontology of Biological Attributes" ; dcterms:created "2025-06-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A collection of biological attributes (traits) covering all kingdoms of life." ; dcterms:identifier "oba" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:efo.obo, kgr:efo.owl, kgr:oba.obo, kgr:oba.owl, kgr:oba.subsets.oba-basic.obo, kgr:sri-reference-kg.graph ; schema1:identifier "oba" ; schema1:name "Ontology of Biological Attributes" ; doap:repository ; skos:inScheme "phenotype" ; adms:status "Active" ; foaf:homepage . kgr:obci a schema1:Ontology ; rdfs:label "Ontology for Biomarkers of Clinical Interest" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An OWL-formatted ontology that formally defines biomarkers of clinical interest for diseases, phenotypes, and effects, including the FDA-NIH BEST-aligned biomarker role classifications (diagnostic, prognostic, predictive, monitoring, pharmacodynamic/response, safety, and susceptibility/risk biomarkers). OBCI is developed by the clinical-biomarkers group associated with the GlyGen and OncoMX biomarker data resources, and supplies the \"role\" / best-classification vocabulary used by downstream biomarker knowledge graphs." ; dcterms:identifier "obci" ; dcterms:license ; dcterms:modified "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biomarker.bkg.edges.role, kgr:biomarker.bkg.nodes.role, kgr:obci.owl ; schema1:name "Ontology for Biomarkers of Clinical Interest" ; doap:repository ; skos:inScheme "biomedical", "clinical", "precision medicine" ; adms:status "Active" ; foaf:homepage . kgr:obcs a schema1:Ontology ; rdfs:label "Ontology of Biological and Clinical Statistics" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A biomedical ontology in the domain of biological and clinical statistics." ; dcterms:identifier "obcs" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:obcs.kg-bioportal, kgr:obcs.owl ; schema1:name "Ontology of Biological and Clinical Statistics" ; doap:repository ; skos:inScheme "biomedical", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:obi a schema1:Ontology ; rdfs:label "Ontology for Biomedical Investigations" ; dcterms:created "2025-06-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An integrated ontology for the description of life-science and clinical investigations" ; dcterms:identifier "obi" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:efo.obo, kgr:efo.owl, kgr:obi.kg-bioportal, kgr:obi.obi-base.owl, kgr:obi.obi_core.owl, kgr:obi.obo, kgr:obi.owl, kgr:orkg.dump, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:name "Ontology for Biomedical Investigations" ; doap:repository ; skos:inScheme "biomedical", "general" ; adms:status "Active" ; foaf:homepage . kgr:obib a schema1:Ontology ; rdfs:label "Ontology for Biobanking" ; dcterms:created "2025-06-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology built for annotation and modeling of biobank repository and biobanking administration" ; dcterms:identifier "obib" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:obib.kg-bioportal, kgr:obib.owl, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:name "Ontology for Biobanking" ; doap:repository ; skos:inScheme "biomedical", "general" ; adms:status "Active" ; foaf:homepage . kgr:obis a schema1:DataSource ; rdfs:label "Ocean Biodiversity Information System (OBIS)" ; dcterms:created "2025-12-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Ocean Biodiversity Information System (OBIS) is a global open-access marine biodiversity data infrastructure providing trusted access to species observations, environmental context, and related datasets. Current OBIS materials describe roughly 198 million species observations, 205,000 marine species, 7,000+ datasets, and a worldwide node network supporting data publication and reuse." ; dcterms:identifier "obis" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , , ; schema1:hasPart kgr:obis.api, kgr:obis.dca, kgr:obis.geoparquet, kgr:obis.manual, kgr:obis.mapper, kgr:obis.robis, kgr:obis.seamap ; schema1:identifier "obis" ; schema1:name "Ocean Biodiversity Information System (OBIS)" ; doap:repository ; skos:inScheme "biodiversity", "environment", "organisms" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:UNESCO-IOC, kgr:vliz . kgr:obo-db-ingest a schema1:Aggregator ; rdfs:label "OBO Database Ingestion" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A set of databases formalized in OBO, OWL, and OBO Graph JSON formats, as well as mappings and nodelists." ; dcterms:identifier "obo-db-ingest" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:obo-db-ingest.bigg.compartment.json, kgr:obo-db-ingest.bigg.compartment.obo, kgr:obo-db-ingest.bigg.compartment.owl, kgr:obo-db-ingest.bigg.compartment.sssom.tsv, kgr:obo-db-ingest.bigg.compartment.tsv, kgr:obo-db-ingest.bigg.metabolite.json, kgr:obo-db-ingest.bigg.metabolite.obo, kgr:obo-db-ingest.bigg.metabolite.owl, kgr:obo-db-ingest.bigg.metabolite.sssom.tsv, kgr:obo-db-ingest.bigg.metabolite.tsv, kgr:obo-db-ingest.bigg.model.json, kgr:obo-db-ingest.bigg.model.obo, kgr:obo-db-ingest.bigg.model.owl, kgr:obo-db-ingest.bigg.model.tsv, kgr:obo-db-ingest.bigg.reaction.json, kgr:obo-db-ingest.bigg.reaction.obo, kgr:obo-db-ingest.bigg.reaction.owl, kgr:obo-db-ingest.bigg.reaction.sssom.tsv, kgr:obo-db-ingest.bigg.reaction.tsv, kgr:obo-db-ingest.ccle.json, kgr:obo-db-ingest.ccle.obo, kgr:obo-db-ingest.ccle.owl, kgr:obo-db-ingest.ccle.sssom.tsv, kgr:obo-db-ingest.ccle.tsv, kgr:obo-db-ingest.cgnc.json, kgr:obo-db-ingest.cgnc.obo, kgr:obo-db-ingest.cgnc.owl, kgr:obo-db-ingest.cgnc.sssom.tsv, kgr:obo-db-ingest.cgnc.tsv, kgr:obo-db-ingest.chembl.compound.json, kgr:obo-db-ingest.chembl.compound.obo, kgr:obo-db-ingest.chembl.compound.owl, kgr:obo-db-ingest.chembl.compound.sssom.tsv, kgr:obo-db-ingest.chembl.compound.tsv, kgr:obo-db-ingest.chembl.target.json, kgr:obo-db-ingest.chembl.target.obo, kgr:obo-db-ingest.chembl.target.owl, kgr:obo-db-ingest.chembl.target.sssom.tsv, kgr:obo-db-ingest.chembl.target.tsv, kgr:obo-db-ingest.civic.gid.json, kgr:obo-db-ingest.civic.gid.obo, kgr:obo-db-ingest.civic.gid.owl, kgr:obo-db-ingest.civic.gid.sssom.tsv, kgr:obo-db-ingest.civic.gid.tsv, kgr:obo-db-ingest.clinicaltrialsgov.json, kgr:obo-db-ingest.clinicaltrialsgov.obo, kgr:obo-db-ingest.clinicaltrialsgov.owl, kgr:obo-db-ingest.clinicaltrialsgov.sssom.tsv, kgr:obo-db-ingest.clinicaltrialsgov.tsv, kgr:obo-db-ingest.complexportal.json, kgr:obo-db-ingest.complexportal.obo, kgr:obo-db-ingest.complexportal.owl, kgr:obo-db-ingest.complexportal.sssom.tsv, kgr:obo-db-ingest.complexportal.tsv, kgr:obo-db-ingest.cpt.json, kgr:obo-db-ingest.cpt.obo, kgr:obo-db-ingest.cpt.owl, kgr:obo-db-ingest.cpt.sssom.tsv, kgr:obo-db-ingest.cpt.tsv, kgr:obo-db-ingest.credit.json, kgr:obo-db-ingest.credit.obo, kgr:obo-db-ingest.credit.owl, kgr:obo-db-ingest.credit.sssom.tsv, kgr:obo-db-ingest.credit.tsv, kgr:obo-db-ingest.cvx.json, kgr:obo-db-ingest.cvx.obo, kgr:obo-db-ingest.cvx.owl, kgr:obo-db-ingest.cvx.sssom.tsv, kgr:obo-db-ingest.cvx.tsv, kgr:obo-db-ingest.depmap.json, kgr:obo-db-ingest.depmap.obo, kgr:obo-db-ingest.depmap.owl, kgr:obo-db-ingest.depmap.sssom.tsv, kgr:obo-db-ingest.depmap.tsv, kgr:obo-db-ingest.dictybase.gene.json, kgr:obo-db-ingest.dictybase.gene.obo, kgr:obo-db-ingest.dictybase.gene.owl, kgr:obo-db-ingest.dictybase.gene.tsv, kgr:obo-db-ingest.drugcentral.json, kgr:obo-db-ingest.drugcentral.obo, kgr:obo-db-ingest.drugcentral.owl, kgr:obo-db-ingest.drugcentral.sssom.tsv, kgr:obo-db-ingest.drugcentral.tsv, kgr:obo-db-ingest.ec.json, kgr:obo-db-ingest.ec.obo, kgr:obo-db-ingest.ec.owl, kgr:obo-db-ingest.ec.sssom.tsv, kgr:obo-db-ingest.ec.tsv, kgr:obo-db-ingest.flybase.json, kgr:obo-db-ingest.flybase.obo, kgr:obo-db-ingest.flybase.owl, kgr:obo-db-ingest.flybase.tsv, kgr:obo-db-ingest.gard.json, kgr:obo-db-ingest.gard.obo, kgr:obo-db-ingest.gard.owl, kgr:obo-db-ingest.gard.tsv, kgr:obo-db-ingest.geonames.feature.json, kgr:obo-db-ingest.geonames.feature.obo, kgr:obo-db-ingest.geonames.feature.owl, kgr:obo-db-ingest.geonames.feature.tsv, kgr:obo-db-ingest.geonames.json, kgr:obo-db-ingest.geonames.obo, kgr:obo-db-ingest.geonames.owl, kgr:obo-db-ingest.geonames.tsv, kgr:obo-db-ingest.goldbook.json, kgr:obo-db-ingest.goldbook.obo, kgr:obo-db-ingest.goldbook.owl, kgr:obo-db-ingest.goldbook.sssom.tsv, kgr:obo-db-ingest.goldbook.tsv, kgr:obo-db-ingest.gtdb.json, kgr:obo-db-ingest.gtdb.obo, kgr:obo-db-ingest.gtdb.owl, kgr:obo-db-ingest.gtdb.sssom.tsv, kgr:obo-db-ingest.gtdb.tsv, kgr:obo-db-ingest.hgnc.genegroup.json, kgr:obo-db-ingest.hgnc.genegroup.obo, kgr:obo-db-ingest.hgnc.genegroup.owl, kgr:obo-db-ingest.hgnc.genegroup.tsv, kgr:obo-db-ingest.hgnc.json, kgr:obo-db-ingest.hgnc.obo, kgr:obo-db-ingest.hgnc.owl, kgr:obo-db-ingest.hgnc.sssom.tsv, kgr:obo-db-ingest.hgnc.tsv, kgr:obo-db-ingest.iana.mediatype.json, kgr:obo-db-ingest.iana.mediatype.obo, kgr:obo-db-ingest.iana.mediatype.owl, kgr:obo-db-ingest.iana.mediatype.sssom.tsv, kgr:obo-db-ingest.iana.mediatype.tsv, kgr:obo-db-ingest.icd10.json, kgr:obo-db-ingest.icd10.obo, kgr:obo-db-ingest.icd10.owl, kgr:obo-db-ingest.icd10.tsv, kgr:obo-db-ingest.icd11.json, kgr:obo-db-ingest.icd11.obo, kgr:obo-db-ingest.icd11.owl, kgr:obo-db-ingest.icd11.sssom.tsv, kgr:obo-db-ingest.icd11.tsv, kgr:obo-db-ingest.iconclass.json, kgr:obo-db-ingest.iconclass.obo, kgr:obo-db-ingest.iconclass.owl, kgr:obo-db-ingest.iconclass.tsv, kgr:obo-db-ingest.interpro.json, kgr:obo-db-ingest.interpro.obo, kgr:obo-db-ingest.interpro.owl, kgr:obo-db-ingest.interpro.tsv, kgr:obo-db-ingest.itis.json, kgr:obo-db-ingest.itis.obo, kgr:obo-db-ingest.itis.owl, kgr:obo-db-ingest.itis.tsv, kgr:obo-db-ingest.kegg.genome.json, kgr:obo-db-ingest.kegg.genome.obo, kgr:obo-db-ingest.kegg.genome.owl, kgr:obo-db-ingest.kegg.genome.tsv, kgr:obo-db-ingest.mesh.json, kgr:obo-db-ingest.mesh.obo, kgr:obo-db-ingest.mesh.owl, kgr:obo-db-ingest.mesh.tsv, kgr:obo-db-ingest.mgi.json, kgr:obo-db-ingest.mgi.obo, kgr:obo-db-ingest.mgi.owl, kgr:obo-db-ingest.mgi.sssom.tsv, kgr:obo-db-ingest.mgi.tsv, kgr:obo-db-ingest.mirbase.family.json, kgr:obo-db-ingest.mirbase.family.obo, kgr:obo-db-ingest.mirbase.family.owl, kgr:obo-db-ingest.mirbase.family.tsv, kgr:obo-db-ingest.mirbase.json, kgr:obo-db-ingest.mirbase.mature.json, kgr:obo-db-ingest.mirbase.mature.obo, kgr:obo-db-ingest.mirbase.mature.owl, kgr:obo-db-ingest.mirbase.mature.tsv, kgr:obo-db-ingest.mirbase.obo, kgr:obo-db-ingest.mirbase.owl, kgr:obo-db-ingest.mirbase.sssom.tsv, kgr:obo-db-ingest.mirbase.tsv, kgr:obo-db-ingest.msigdb.json, kgr:obo-db-ingest.msigdb.obo, kgr:obo-db-ingest.msigdb.owl, kgr:obo-db-ingest.msigdb.sssom.tsv, kgr:obo-db-ingest.msigdb.tsv, kgr:obo-db-ingest.ncbi.gc.json, kgr:obo-db-ingest.ncbi.gc.obo, kgr:obo-db-ingest.ncbi.gc.owl, kgr:obo-db-ingest.ncbi.gc.sssom.tsv, kgr:obo-db-ingest.ncbi.gc.tsv, kgr:obo-db-ingest.nihreporter.project.json, kgr:obo-db-ingest.nihreporter.project.obo, kgr:obo-db-ingest.nihreporter.project.owl, kgr:obo-db-ingest.nihreporter.project.tsv, kgr:obo-db-ingest.nlm.json, kgr:obo-db-ingest.nlm.obo, kgr:obo-db-ingest.nlm.owl, kgr:obo-db-ingest.nlm.publisher.json, kgr:obo-db-ingest.nlm.publisher.obo, kgr:obo-db-ingest.nlm.publisher.owl, kgr:obo-db-ingest.nlm.publisher.sssom.tsv, kgr:obo-db-ingest.nlm.publisher.tsv, kgr:obo-db-ingest.nlm.sssom.tsv, kgr:obo-db-ingest.nlm.tsv, kgr:obo-db-ingest.npass.json, kgr:obo-db-ingest.npass.obo, kgr:obo-db-ingest.npass.owl, kgr:obo-db-ingest.npass.sssom.tsv, kgr:obo-db-ingest.npass.tsv, kgr:obo-db-ingest.omim.ps.json, kgr:obo-db-ingest.omim.ps.obo, kgr:obo-db-ingest.omim.ps.owl, kgr:obo-db-ingest.omim.ps.tsv, kgr:obo-db-ingest.pathbank.json, kgr:obo-db-ingest.pathbank.obo, kgr:obo-db-ingest.pathbank.owl, kgr:obo-db-ingest.pathbank.sssom.tsv, kgr:obo-db-ingest.pathbank.tsv, kgr:obo-db-ingest.pfam.clan.json, kgr:obo-db-ingest.pfam.clan.obo, kgr:obo-db-ingest.pfam.clan.owl, kgr:obo-db-ingest.pfam.clan.tsv, kgr:obo-db-ingest.pfam.json, kgr:obo-db-ingest.pfam.obo, kgr:obo-db-ingest.pfam.owl, kgr:obo-db-ingest.pfam.tsv, kgr:obo-db-ingest.pharmgkb.disease.json, kgr:obo-db-ingest.pharmgkb.disease.obo, kgr:obo-db-ingest.pharmgkb.disease.owl, kgr:obo-db-ingest.pharmgkb.disease.sssom.tsv, kgr:obo-db-ingest.pharmgkb.disease.tsv, kgr:obo-db-ingest.pharmgkb.drug.json, kgr:obo-db-ingest.pharmgkb.drug.obo, kgr:obo-db-ingest.pharmgkb.drug.owl, kgr:obo-db-ingest.pharmgkb.drug.sssom.tsv, kgr:obo-db-ingest.pharmgkb.drug.tsv, kgr:obo-db-ingest.pharmgkb.gene.json, kgr:obo-db-ingest.pharmgkb.gene.obo, kgr:obo-db-ingest.pharmgkb.gene.owl, kgr:obo-db-ingest.pharmgkb.gene.sssom.tsv, kgr:obo-db-ingest.pharmgkb.gene.tsv, kgr:obo-db-ingest.pharmgkb.pathways.json, kgr:obo-db-ingest.pharmgkb.pathways.obo, kgr:obo-db-ingest.pharmgkb.pathways.owl, kgr:obo-db-ingest.pharmgkb.pathways.tsv, kgr:obo-db-ingest.pharmgkb.variant.json, kgr:obo-db-ingest.pharmgkb.variant.obo, kgr:obo-db-ingest.pharmgkb.variant.owl, kgr:obo-db-ingest.pharmgkb.variant.sssom.tsv, kgr:obo-db-ingest.pharmgkb.variant.tsv, kgr:obo-db-ingest.pid.pathway.json, kgr:obo-db-ingest.pid.pathway.obo, kgr:obo-db-ingest.pid.pathway.owl, kgr:obo-db-ingest.pid.pathway.tsv, kgr:obo-db-ingest.pombase.json, kgr:obo-db-ingest.pombase.obo, kgr:obo-db-ingest.pombase.owl, kgr:obo-db-ingest.pombase.tsv, kgr:obo-db-ingest.reactome.json, kgr:obo-db-ingest.reactome.obo, kgr:obo-db-ingest.reactome.owl, kgr:obo-db-ingest.reactome.tsv, kgr:obo-db-ingest.rgd.json, kgr:obo-db-ingest.rgd.obo, kgr:obo-db-ingest.rgd.owl, kgr:obo-db-ingest.rgd.sssom.tsv, kgr:obo-db-ingest.rgd.tsv, kgr:obo-db-ingest.rhea.json, kgr:obo-db-ingest.rhea.obo, kgr:obo-db-ingest.rhea.owl, kgr:obo-db-ingest.rhea.sssom.tsv, kgr:obo-db-ingest.rhea.tsv, kgr:obo-db-ingest.ror.json, kgr:obo-db-ingest.ror.obo, kgr:obo-db-ingest.ror.owl, kgr:obo-db-ingest.ror.sssom.tsv, kgr:obo-db-ingest.ror.tsv, kgr:obo-db-ingest.sgd.json, kgr:obo-db-ingest.sgd.obo, kgr:obo-db-ingest.sgd.owl, kgr:obo-db-ingest.sgd.tsv, kgr:obo-db-ingest.signor.json, kgr:obo-db-ingest.signor.obo, kgr:obo-db-ingest.signor.owl, kgr:obo-db-ingest.signor.tsv, kgr:obo-db-ingest.spdx.json, kgr:obo-db-ingest.spdx.obo, kgr:obo-db-ingest.spdx.owl, kgr:obo-db-ingest.spdx.tsv, kgr:obo-db-ingest.sty.json, kgr:obo-db-ingest.sty.obo, kgr:obo-db-ingest.sty.owl, kgr:obo-db-ingest.sty.tsv, kgr:obo-db-ingest.swisslipid.json, kgr:obo-db-ingest.swisslipid.obo, kgr:obo-db-ingest.swisslipid.owl, kgr:obo-db-ingest.swisslipid.sssom.tsv, kgr:obo-db-ingest.swisslipid.tsv, kgr:obo-db-ingest.uniprot.json, kgr:obo-db-ingest.uniprot.obo, kgr:obo-db-ingest.uniprot.owl, kgr:obo-db-ingest.uniprot.ptm.json, kgr:obo-db-ingest.uniprot.ptm.obo, kgr:obo-db-ingest.uniprot.ptm.owl, kgr:obo-db-ingest.uniprot.ptm.sssom.tsv, kgr:obo-db-ingest.uniprot.ptm.tsv, kgr:obo-db-ingest.uniprot.sssom.tsv, kgr:obo-db-ingest.uniprot.tsv, kgr:obo-db-ingest.wikipathways.json, kgr:obo-db-ingest.wikipathways.obo, kgr:obo-db-ingest.wikipathways.owl, kgr:obo-db-ingest.wikipathways.tsv, kgr:obo-db-ingest.zfin.json, kgr:obo-db-ingest.zfin.obo, kgr:obo-db-ingest.zfin.owl, kgr:obo-db-ingest.zfin.sssom.tsv, kgr:obo-db-ingest.zfin.tsv ; schema1:name "OBO Database Ingestion" ; doap:repository ; skos:inScheme "general" ; adms:status "Active" ; foaf:homepage . kgr:obo_rel a schema1:Ontology ; rdfs:label "OBO relationship types (legacy)" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Description unavailable." ; dcterms:identifier "obo_rel" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-08T00:00:00+00:00"^^xsd:dateTime ; schema1:name "OBO relationship types (legacy)" ; skos:inScheme "biological systems", "general" ; adms:status "Inactive" ; foaf:homepage . kgr:oboe a schema1:Ontology ; rdfs:label "OBOE: The Extensible Observation Ontology" ; dcterms:created "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Extensible Observation Ontology (OBOE) is a formal OWL ontology from NCEAS for capturing the semantics of scientific observation and measurement. Its core concepts are Observation, Measurement, Entity, Characteristic, Standard (units and controlled vocabularies), and Protocol, and it includes an extensive set of unit definitions supporting unit conversion. OBOE is used for semantic annotation of ecological and environmental data and is designed to be extended with domain-specific Entities and Characteristics." ; dcterms:identifier "oboe" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ecso.owl, kgr:oboe.bioportal, kgr:oboe.characteristics, kgr:oboe.core, kgr:oboe.kg-bioportal, kgr:oboe.owl, kgr:oboe.repository, kgr:oboe.standards ; schema1:name "OBOE: The Extensible Observation Ontology" ; doap:repository ; skos:altLabel "Extensible Observation Ontology", "OBOE" ; skos:inScheme "ecology", "environment", "information technology", "metadata" ; adms:status "Inactive" ; foaf:homepage . kgr:obofoundry a schema1:Aggregator ; rdfs:label "OBO Foundry" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Open Biological and Biomedical Ontology (OBO) Foundry is a community of ontology developers committed to a shared set of principles for open, interoperable biomedical ontologies. It runs the OBO registry, the canonical list of member ontologies with their metadata, persistent URLs (PURLs), release products, licenses and contacts, and it reviews ontologies against its principles. When checked on 2026-10-04 the registry listed 267 ontologies, 191 of them active." ; dcterms:identifier "obofoundry" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:bioportal.api, kgr:bioportal.portal, kgr:bioregistry.registry.json, kgr:bioregistry.sssom, kgr:obofoundry.portal, kgr:obofoundry.principles, kgr:obofoundry.registry.jsonld, kgr:obofoundry.registry.ttl, kgr:obofoundry.registry.yaml, kgr:obofoundry.repository, kgr:ols.json, kgr:ols.json-linked ; schema1:name "OBO Foundry" ; doap:repository ; skos:altLabel "OBO", "OBO Library", "OBO registry", "Open Biological and Biomedical Ontology Foundry" ; skos:inScheme "biomedical", "information technology", "metadata" ; adms:status "Active" ; foaf:homepage . kgr:occo a schema1:Ontology ; rdfs:label "Occupation Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology representing occupations. It is designed to facilitate harmonization of existing occupation standards, such as the US Bureau of Labor Statistics Standard Occupational Classification (US SOC), the International Standard Classification of Occupations (ISCO), the UK National Statistics Standard Occupational Classification (UK SOC), and the European Skills, Competences, Qualifications and Occupations (ESCO) of the European Union." ; dcterms:identifier "occo" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:occo.kg-bioportal, kgr:occo.owl ; schema1:name "Occupation Ontology" ; doap:repository ; skos:inScheme "biomedical", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:offsides a schema1:DataSource ; rdfs:label "OFFSIDES" ; dcterms:created "2025-07-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "OFFSIDES is a database of drug side effects that were found through data mining of FDA Adverse Event Reporting System (FAERS) but are not listed on the official FDA drug labels. Part of the nSIDES resource developed by Tatonetti Lab." ; dcterms:identifier "offsides" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:bioteque.embeddings, kgr:offsides.data, kgr:offsides.docs ; schema1:name "OFFSIDES" ; doap:repository ; skos:altLabel "OffSIDES" ; skos:inScheme "pharmacology", "pharmacovigilance" ; adms:status "Active" ; foaf:homepage . kgr:ogg a schema1:Ontology ; rdfs:label "The Ontology of Genes and Genomes" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A formal ontology of genes and genomes of biological organisms." ; dcterms:identifier "ogg" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ogg.owl ; schema1:name "The Ontology of Genes and Genomes" ; doap:repository ; skos:inScheme "biological systems", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:ogi a schema1:Ontology ; rdfs:label "Ontology for genetic interval" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology that formalizes the genomic element by defining an upper class genetic interval" ; dcterms:identifier "ogi" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ogi.kg-bioportal, kgr:ogi.owl ; schema1:name "Ontology for genetic interval" ; skos:inScheme "chemistry and biochemistry", "genomics" ; adms:status "Inactive" ; foaf:homepage . kgr:ogms a schema1:Ontology ; rdfs:label "Ontology for General Medical Science" ; dcterms:created "2025-06-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology for representing treatment of disease and diagnosis and on carcinomas and other pathological entities" ; dcterms:identifier "ogms" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:efo.obo, kgr:efo.owl, kgr:kg-idg.graph, kgr:ogms.kg-bioportal, kgr:ogms.owl ; schema1:name "Ontology for General Medical Science" ; doap:repository ; skos:inScheme "biomedical", "clinical" ; adms:status "Active" ; foaf:homepage . kgr:ogsf a schema1:Ontology ; rdfs:label "Ontology of Genetic Susceptibility Factor" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An application ontology to represent genetic susceptibility to a specific disease, adverse event, or a pathological process." ; dcterms:identifier "ogsf" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ogsf.kg-bioportal, kgr:ogsf.owl ; schema1:name "Ontology of Genetic Susceptibility Factor" ; doap:repository ; skos:inScheme "biomedical", "general", "genomics" ; adms:status "Inactive" ; foaf:homepage . kgr:ohd a schema1:Ontology ; rdfs:label "Oral Health and Disease Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Oral Health and Disease Ontology is used for representing the diagnosis and treatment of dental maladies." ; dcterms:identifier "ohd" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ohd.kg-bioportal, kgr:ohd.owl ; schema1:name "Oral Health and Disease Ontology" ; doap:repository ; skos:inScheme "biomedical", "clinical" ; adms:status "Active" ; foaf:homepage . kgr:ohd-carolina a schema1:KnowledgeGraph ; rdfs:label "Open Health Data @ Carolina" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Open Health Data @ Carolina (OHD@Carolina) is a statistical association knowledge graph of concept prevalence and co-occurrence in electronic health records, derived from UNC Health's OMOP database on a five-year cohort of about 6 million patients (2018 through 2022). Edges link conditions, drugs, procedures and phenotypes with positive or negative correlation predicates and carry chi-squared p-values, log odds ratios and sample sizes. Concepts and pairs with counts of 10 or fewer were excluded and counts were randomized with a Poisson distribution to protect patient privacy. RENCI builds it with ORION and serves it as an Automat TRAPI knowledge provider for the NCATS Biomedical Data Translator." ; dcterms:identifier "ohd-carolina" ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:automat.ohd-carolina, kgr:ohd-carolina.graph, kgr:ohd-carolina.metadata, kgr:ohd-carolina.neo4j, kgr:ohd-carolina.source-edges, kgr:ohd-carolina.trapi ; schema1:identifier "automat-openhealthdata-carolina" ; schema1:name "Open Health Data @ Carolina" ; skos:altLabel "Automat Openhealth Data at Carolina", "OHD Carolina", "OHD@Carolina", "Openhealth Data at Carolina" ; skos:inScheme "biomedical", "clinical", "electronic health records" ; adms:status "Active" ; foaf:homepage . kgr:ohmi a schema1:Ontology ; rdfs:label "Ontology of Host-Microbiome Interactions" ; dcterms:created "2025-07-10T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Ontology of Host-Microbiome Interactions aims to ontologically represent and standardize various entities and relations related to microbiomes, microbiome host organisms (e.g., human and mouse), and the interactions between the hosts and microbiomes at different conditions." ; dcterms:identifier "ohmi" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ohmi.kg-bioportal, kgr:ohmi.owl ; schema1:name "Ontology of Host-Microbiome Interactions" ; doap:repository ; skos:inScheme "microbiology", "microbiome", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:ohpi a schema1:Ontology ; rdfs:label "Ontology of Host Pathogen Interactions" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "OHPI is a community-driven ontology of host-pathogen interactions (OHPI) and represents the virulence factors (VFs) and how the mutants of VFs in the Victors database become less virulence inside a host organism or host cells. It is developed to represent manually curated HPI knowledge available in the PHIDIAS resource." ; dcterms:identifier "ohpi" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ohpi.kg-bioportal, kgr:ohpi.owl ; schema1:name "Ontology of Host Pathogen Interactions" ; doap:repository ; skos:inScheme "biological systems", "host-pathogen interactions", "microbiology" ; adms:status "Active" ; foaf:homepage . kgr:oio a schema1:Ontology ; rdfs:label "OBO Interoperability Ontology" ; dcterms:created "2025-11-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The OBO Interoperability Ontology (OIO) was a set of annotation properties and ontology metadata standards developed to promote interoperability between OBO Foundry ontologies. Its terms and properties have been superseded by OMO (Ontology Metadata Ontology) and are now considered deprecated. OIO provided foundational metadata terms that were widely used in early OBO ontologies for describing ontology versioning, imports, and other metadata." ; dcterms:identifier "oio" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:efo.obo, kgr:efo.owl, kgr:oio.obo, kgr:oio.owl ; schema1:name "OBO Interoperability Ontology" ; skos:altLabel "OIO", "oio" ; skos:inScheme "general", "information technology" ; adms:status "Inactive" ; foaf:homepage . kgr:okn-void a schema1:KnowledgeGraph ; rdfs:label "OKN VoID graph descriptions" ; dcterms:created "2026-03-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Collected VoID (Vocabulary of Interlinked Datasets) metadata for all OKN graphs" ; dcterms:identifier "okn-void" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:okn-void.sparql, kgr:okn-void.tpf ; schema1:name "OKN VoID graph descriptions" ; skos:inScheme "information technology", "metadata" ; adms:status "Active" ; foaf:homepage . kgr:olatdv a schema1:Ontology ; rdfs:label "Medaka Developmental Stages" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Life cycle stages for Medaka" ; dcterms:identifier "olatdv" ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:olatdv.kg-bioportal, kgr:olatdv.obo, kgr:olatdv.owl ; schema1:name "Medaka Developmental Stages" ; doap:repository ; skos:inScheme "anatomy and development" ; adms:status "Inactive" ; foaf:homepage . kgr:ols a schema1:Aggregator ; rdfs:label "Ontology Lookup Service" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Ontology Lookup Service (OLS) is a repository for biomedical ontologies that aims to provide a single point of access to the latest ontology versions. Users can browse ontologies through the website and programmatically via the OLS REST API and an MCP server. As of 2026-09-30 it served 287 ontologies with about 10.8 million classes, loaded from the OBO Foundry registry plus ontologies curated by EMBL-EBI. Maintained by the Samples, Phenotypes and Ontologies Team (SPOT) at EMBL-EBI." ; dcterms:identifier "ols" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:bioregistry.registry.json, kgr:bioregistry.sssom, kgr:ols.api, kgr:ols.embeddings, kgr:ols.json, kgr:ols.json-linked, kgr:ols.mappings, kgr:ols.mcp, kgr:ols.portal, kgr:service-kp.trapi ; schema1:identifier "ols" ; schema1:name "Ontology Lookup Service" ; doap:repository ; skos:altLabel "OLS", "OLS4" ; skos:inScheme "biological systems", "biomedical", "information technology" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ebi . kgr:oma a schema1:DataSource ; rdfs:label "OMA" ; dcterms:created "2025-05-07T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "OMA (Orthologous MAtrix) is a database of orthologous genes among multiple species, providing a systematic classification of orthologs across complete genomes." ; dcterms:identifier "oma" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:oma.api.rest, kgr:oma.api.sparql, kgr:oma.group-descriptions.txt, kgr:oma.groups.txt, kgr:oma.hdf5, kgr:oma.hogs.orthoxml, kgr:oma.mapping.ensembl, kgr:oma.mapping.entrez, kgr:oma.mapping.go, kgr:oma.mapping.refseq, kgr:oma.mapping.uniprot, kgr:oma.protein-annotations.txt, kgr:oma.proteins.fasta, kgr:oma.rdf, kgr:oma.site, kgr:oma.species.txt, kgr:rdf-portal.sparql.sib ; schema1:name "OMA" ; doap:repository ; skos:inScheme "genomics", "molecular evolution", "organisms" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:sib . kgr:omia a schema1:DataSource ; rdfs:label "Online Mendelian Inheritance in Animals (OMIA)" ; dcterms:created "2026-08-12T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A catalogue of inherited disorders, other single-locus traits, and associated genes and variants in animals, covering 786 mostly vertebrate species." ; dcterms:identifier "omia" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:omia.browser, kgr:omia.gene-mappings, kgr:omia.sql-dump, kgr:omia.vcf-exports, kgr:omia.xml-dump, kgr:sniff.federation-edges, kgr:sniff.federation-nodes ; schema1:name "Online Mendelian Inheritance in Animals (OMIA)" ; skos:altLabel "OMIA" ; skos:inScheme "agriculture", "domestic animals", "genetic variation", "genomics", "organisms", "phenotype" ; adms:status "Active" ; foaf:homepage . kgr:omiabis a schema1:Ontology ; rdfs:label "Ontologized MIABIS" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontological version of MIABIS (Minimum Information About BIobank data Sharing)" ; dcterms:identifier "omiabis" ; dcterms:license ; dcterms:modified "2026-04-15T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:omiabis.owl ; schema1:name "Ontologized MIABIS" ; doap:repository ; skos:inScheme "biomedical" ; adms:status "Inactive" ; foaf:homepage . kgr:omicsdi a schema1:Aggregator ; rdfs:label "OmicsDI" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "OmicsDI (Omics Discovery Index) is an EMBL-EBI index of dataset metadata from public omics repositories. As of October 2026 it indexes about 4.9 million datasets from 28 repositories, covering genomics, transcriptomics, proteomics, metabolomics, computational models and clinical studies, plus BioStudies literature records, and provides a unified search portal and REST API." ; dcterms:identifier "omicsdi" ; dcterms:isReferencedBy , , ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:nde.graph, kgr:omicsdi.api, kgr:omicsdi.portal ; schema1:identifier "omicsdi" ; schema1:name "OmicsDI" ; skos:altLabel "Omics Discovery Index", "OmicsDI" ; skos:inScheme "chemistry and biochemistry", "genomics", "metabolomics", "proteomics" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ebi . kgr:omim a schema1:DataSource ; rdfs:label "OMIM" ; dcterms:created "2025-06-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "OMIM (Online Mendelian Inheritance in Man) is a continuously updated, expert-curated catalog of human genes and genetic disorders, focusing on genotype–phenotype relationships and the molecular basis of disease." ; dcterms:identifier "omim" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:babel.compendia, kgr:ctd.chemicals_diseases, kgr:ctd.genes_diseases, kgr:ctd.medic, kgr:dbnsfp.academic, kgr:dbnsfp.commercial, kgr:eram.downloads, kgr:eram.web, kgr:genecards.disease.associations, kgr:genecards.gene.annotations, kgr:genecards.web.interface, kgr:genereviews.omim, kgr:gp-kg.graph, kgr:gtr.test_condition_gene, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:kg-ebi-gene2pheno.edges.kgx, kgr:kg-ebi-gene2pheno.edges.trapi, kgr:kg-ebi-gene2pheno.nodes.kgx, kgr:kg-idg.graph, kgr:kg-predict.gpkg, kgr:markerdb.api, kgr:markerdb.sequence_variants.tsv, kgr:medgen.csv, kgr:medgen.hpo-omim-mapping, kgr:medgen.id-mappings, kgr:medgen.mgconso, kgr:medgen.mgdef, kgr:medgen.mgrel, kgr:medgen.mgsat, kgr:medgen.names, kgr:medkg.site, kgr:ncbigene.mim2gene_medgen, kgr:obo-db-ingest.omim.ps.json, kgr:obo-db-ingest.omim.ps.obo, kgr:obo-db-ingest.omim.ps.owl, kgr:obo-db-ingest.omim.ps.tsv, kgr:omim.api, kgr:omim.mim2gene, kgr:omim.web, kgr:openpredict.api, kgr:openpredict.predictions, kgr:orphanet.scientific_knowledge_files, kgr:pavs-kg.api, kgr:pavs-kg.phenopackets, kgr:pavs-kg.portal, kgr:pavs-kg.sparql, kgr:pharmdb.graph, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:pharmkg.graph, kgr:predict.method, kgr:predict.supporting-information, kgr:primekg.graph, kgr:pubchem.substances.asn, kgr:pubchem.substances.sdf, kgr:raras.encyclopedia, kgr:raras.portal, kgr:rdbridge.graph, kgr:rdkg.tpf, kgr:redrugs.source, kgr:spoke-okn.graph, kgr:spoke.graph, kgr:sri-reference-kg.graph, kgr:stitch.api, kgr:stitch.downloads, kgr:stitch.portal, kgr:string.cog.links, kgr:string.cog.links.detailed, kgr:string.database, kgr:string.protein.links, kgr:string.protein.links.detailed, kgr:string.protein.links.full, kgr:string.protein.physical.links, kgr:string.protein.physical.links.detailed, kgr:string.protein.physical.links.full, kgr:tcrd.api, kgr:tcrd.database_download, kgr:tcrd.documentation, kgr:togows.rest-api, kgr:unibiomap.auxs, kgr:unibiomap.disease_desc, kgr:unibiomap.links, kgr:unibiomap.pred, kgr:unibiomap.pred.full ; schema1:identifier "omim" ; schema1:name "OMIM" ; skos:inScheme "biomedical", "clinical", "genomics", "rare disease" ; adms:status "Active" ; foaf:homepage . kgr:omit a schema1:Ontology ; rdfs:label "Ontology for MIRNA Target" ; dcterms:created "2025-06-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Ontology to establish data exchange standards and common data elements in the microRNA (miR) domain" ; dcterms:identifier "omit" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:efo.obo, kgr:efo.owl, kgr:omit.kg-bioportal, kgr:omit.owl, kgr:orkg.dump ; schema1:name "Ontology for MIRNA Target" ; doap:repository ; skos:inScheme "chemistry and biochemistry", "genomics", "non-coding RNA" ; adms:status "Active" ; foaf:homepage . kgr:omnicorp a schema1:DataSource ; rdfs:label "OmniCorp" ; dcterms:created "2025-11-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "OmniCorp is a NCATS Translator literature co-occurrence database that runs named-entity recognition and entity linking over public PubMed abstracts to count publications containing individual Biolink-relevant entities and pairs of co-mentioned entities. It supports literature-based discovery and evidence augmentation by adding co-occurrence counts or literature co-occurrence edges to TRAPI messages." ; dcterms:identifier "omnicorp" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:omnicorp.api, kgr:omnicorp.cooccurrence ; schema1:identifier "omnicorp" ; schema1:name "OmniCorp" ; doap:repository ; skos:altLabel "OmniCorp" ; skos:inScheme "biomedical", "literature", "natural language processing" ; skos:related "translator" ; adms:status "Active" ; foaf:homepage . kgr:omnipath a schema1:Aggregator ; rdfs:label "OmniPath" ; dcterms:created "2025-07-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "OmniPath is a comprehensive prior knowledge resource that integrates molecular interactions and biological pathway information from over 100 original databases and resources. It provides unified access to protein-protein interactions, gene regulatory interactions, enzyme-PTM relationships, protein complexes, protein annotations, and intercellular communication data through multiple interfaces including web services, R/Bioconductor packages, Python clients, and Cytoscape plugins." ; dcterms:identifier "omnipath" ; dcterms:isReferencedBy , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:bioteque.embeddings, kgr:omnipath.cytoscape_plugin, kgr:omnipath.explorer, kgr:omnipath.pypath, kgr:omnipath.python_client, kgr:omnipath.r_package, kgr:omnipath.webservice ; schema1:name "OmniPath" ; doap:repository ; skos:inScheme "pathways", "protein interactions", "proteomics", "signal transduction", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:omo a schema1:Ontology ; rdfs:label "OBO Metadata Ontology" ; dcterms:created "2025-06-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO)." ; dcterms:identifier "omo" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:efo.obo, kgr:efo.owl, kgr:omo.kg-bioportal, kgr:omo.owl ; schema1:name "OBO Metadata Ontology" ; doap:repository ; skos:inScheme "information technology", "metadata" ; adms:status "Active" ; foaf:homepage . kgr:omp a schema1:Ontology ; rdfs:label "Ontology of Microbial Phenotypes" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology of phenotypes covering microbes" ; dcterms:identifier "omp" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:omp.kg-bioportal, kgr:omp.obo, kgr:omp.owl ; schema1:name "Ontology of Microbial Phenotypes" ; doap:repository ; skos:inScheme "microbiology", "phenotype" ; adms:status "Active" ; foaf:homepage . kgr:omrse a schema1:Ontology ; rdfs:label "Ontology for Modeling and Representation of Social Entities" ; dcterms:created "2025-07-10T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Ontology for Modeling and Representation of Social Entities (OMRSE) is an OBO Foundry ontology that represents the various entities that arise from human social interactions, such as social acts, social roles, social groups, and organizations." ; dcterms:identifier "omrse" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:omrse.kg-bioportal, kgr:omrse.owl ; schema1:name "Ontology for Modeling and Representation of Social Entities" ; doap:repository ; skos:inScheme "biomedical" ; adms:status "Active" ; foaf:homepage . kgr:onco a schema1:KnowledgeGraph ; rdfs:label "OnCo" ; dcterms:created "2026-09-21T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "OnCo is a public, cited knowledge graph of oncology. It holds one record per cancer, front, technology, target, treatment or test, company, institution, person, pathway, trial, key paper, journal, pairing, roadmap, bottleneck and idea, with links in every direction and a plain-English summary before the technical layer. Every record carries a date of last check and links to a primary source. The corpus is built from TypeScript records in a public repository and refreshed from PubChem, RCSB PDB, Wikidata, OpenAlex, GLOBOCAN, ClinicalTrials.gov, Europe PMC and openFDA. The same corpus ships as a website, a static JSON API with NDJSON, RDF N-Triples and JSON Schema downloads, per-record Markdown context files, a command-line tool and a Model Context Protocol server. The code is MIT and the data are CC BY-NC 4.0." ; dcterms:identifier "onco" ; dcterms:license ; dcterms:modified "2026-10-03T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:onco.all_json, kgr:onco.all_ndjson, kgr:onco.api, kgr:onco.mcp, kgr:onco.ntriples, kgr:onco.schema, kgr:onco.site ; schema1:name "OnCo" ; doap:repository ; skos:inScheme "biomedical", "cancer", "clinical", "drug discovery", "precision medicine" ; adms:status "Active" ; foaf:homepage . kgr:oncokb a schema1:DataSource ; rdfs:label "OncoKB" ; dcterms:created "2025-08-12T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "OncoKB is a precision oncology knowledge base developed at Memorial Sloan Kettering Cancer Center that contains biological and clinical information about genomic alterations in cancer. It provides alteration- and tumor type-specific therapeutic implications classified using the OncoKB Levels of Evidence system, which assigns clinical actionability to individual mutational events. The platform integrates data from 945 genes, 7967 alterations, 143 cancer types, and 156 drugs with FDA-recognized human genetic variant database status." ; dcterms:identifier "oncokb" ; dcterms:isReferencedBy , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:cancer-genome-interpreter.clinicalkg.graph, kgr:clinicalkg.graph, kgr:oncokb.annotator, kgr:oncokb.api, kgr:oncokb.demo, kgr:oncokb.web_interface ; schema1:identifier "oncokb" ; schema1:name "OncoKB" ; doap:repository ; skos:inScheme "biomedical", "cancer", "clinical", "genetic variation", "genomics", "precision medicine" ; adms:status "Active" ; foaf:homepage . kgr:one a schema1:Ontology ; rdfs:label "Ontology for Nutritional Epidemiology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology to standardize research output of nutritional epidemiologic studies." ; dcterms:identifier "one" ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:one.kg-bioportal, kgr:one.owl ; schema1:name "Ontology for Nutritional Epidemiology" ; doap:repository ; skos:inScheme "chemistry and biochemistry", "nutrition" ; adms:status "Active" ; foaf:homepage . kgr:ons a schema1:Ontology ; rdfs:label "Ontology for Nutritional Studies" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology for description of concepts in the nutritional studies domain." ; dcterms:identifier "ons" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ons.kg-bioportal, kgr:ons.owl ; schema1:name "Ontology for Nutritional Studies" ; doap:repository ; skos:inScheme "chemistry and biochemistry", "nutrition" ; adms:status "Active" ; foaf:homepage . kgr:ontoavida a schema1:Ontology ; rdfs:label "OntoAvida: ontology for Avida digital evolution platform" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "OntoAvida develops an integrated vocabulary for the description of the most widely-used computational approach for studying evolution using digital organisms (i.e., self-replicating computer programs that evolve within a user-defined computational environment)." ; dcterms:identifier "ontoavida" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ontoavida.kg-bioportal, kgr:ontoavida.obo, kgr:ontoavida.owl ; schema1:name "OntoAvida: ontology for Avida digital evolution platform" ; doap:repository ; skos:inScheme "biological systems", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:ontology-kp a schema1:KnowledgeGraph ; rdfs:label "Ontology KP" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A Translator Knowledge Provider dedicated to ontology-based services." ; dcterms:identifier "ontology-kp" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ontology-kp.docs, kgr:ontology-kp.graph, kgr:ontology-kp.ubergraph ; schema1:name "Ontology KP" ; skos:inScheme "biomedical", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:ontoneo a schema1:Ontology ; rdfs:label "Obstetric and Neonatal Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Obstetric and Neonatal Ontology is a structured controlled vocabulary to provide a representation of the data from electronic health records (EHRs) involved in the care of the pregnant woman, and of her baby." ; dcterms:identifier "ontoneo" ; dcterms:isReferencedBy , , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ontoneo.kg-bioportal, kgr:ontoneo.owl ; schema1:name "Obstetric and Neonatal Ontology" ; doap:repository ; skos:inScheme "biomedical", "clinical", "electronic health records" ; adms:status "Active" ; foaf:homepage . kgr:oostt a schema1:Ontology ; rdfs:label "Ontology of Organizational Structures of Trauma centers and Trauma systems" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology built for representating the organizational components of trauma centers and trauma systems." ; dcterms:identifier "oostt" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:oostt.kg-bioportal, kgr:oostt.owl ; schema1:name "Ontology of Organizational Structures of Trauma centers and Trauma systems" ; doap:repository ; skos:inScheme "biomedical", "clinical" ; adms:status "Active" ; foaf:homepage . kgr:open-english-wordnet a schema1:DataSource ; rdfs:label "Open English WordNet" ; dcterms:created "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Open English WordNet (OEWN) is an open-source, community-maintained lexical database of English, forked from Princeton WordNet 3.1 and developed under the Global WordNet Association. It groups words into synsets linked by relations such as hypernymy, antonymy and meronymy, and is released yearly in WN-LMF XML, RDF, JSON and legacy WNDB formats." ; dcterms:identifier "open-english-wordnet" ; dcterms:isReferencedBy , ; dcterms:language "en" ; dcterms:license ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:open-english-wordnet.api, kgr:open-english-wordnet.homepage, kgr:open-english-wordnet.json, kgr:open-english-wordnet.json-plus, kgr:open-english-wordnet.lmf, kgr:open-english-wordnet.lmf-plus, kgr:open-english-wordnet.rdf, kgr:open-english-wordnet.rdf-plus, kgr:open-english-wordnet.repo, kgr:open-english-wordnet.wndb, kgr:open-english-wordnet.wndb-plus ; schema1:name "Open English WordNet" ; doap:repository ; skos:altLabel "EWN", "English WordNet", "OEWN" ; skos:inScheme "literature", "natural language processing" ; adms:status "Active" ; foaf:homepage . kgr:open-tggates a schema1:DataSource ; rdfs:label "Open TG-GATEs" ; dcterms:created "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Open TG-GATEs is the public release of the toxicogenomics database built by the Japanese Toxicogenomics Project (TGP, 2002-2007) and Toxicogenomics Informatics Project (TGP2, 2007-2012), collaborations of the National Institute of Biomedical Innovation, the National Institute of Health Sciences and Japanese pharmaceutical companies. It covers 170 compounds, with Affymetrix microarray gene expression data (CEL files) from rat liver and kidney in vivo (single and repeated dosing) and from rat and human primary hepatocytes in vitro, linked to pathology, hematology, blood biochemistry, organ and body weight, and cell viability data. The original site is offline; the data were last updated in 2012 and are preserved in the NBDC LSDB Archive and in ArrayExpress." ; dcterms:identifier "open-tggates" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:about , ; schema1:hasPart kgr:open-tggates.all-attributes, kgr:open-tggates.archive, kgr:open-tggates.arrayexpress-human-in-vitro, kgr:open-tggates.arrayexpress-rat-in-vitro, kgr:open-tggates.arrayexpress-rat-repeat-dose, kgr:open-tggates.arrayexpress-rat-single-dose, kgr:open-tggates.biochemistry, kgr:open-tggates.cel-files, kgr:open-tggates.compounds, kgr:open-tggates.download, kgr:open-tggates.hematology, kgr:open-tggates.histopathology-images, kgr:open-tggates.original-site, kgr:open-tggates.pathology, kgr:open-tggates.togodb ; schema1:name "Open TG-GATEs" ; skos:altLabel "TG-GATEs", "Toxicogenomics Project-Genomics Assisted Toxicity Evaluation System" ; skos:inScheme "gene expression profiling", "genomics", "pharmacology", "toxicology" ; adms:status "Inactive" ; foaf:homepage . kgr:open-tree-of-life a schema1:DataSource ; rdfs:label "Open Tree of Life" ; dcterms:created "2025-12-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Open Tree of Life (OToL) is a comprehensive, collaborative online phylogenetic tree synthesizing published evolutionary estimates with taxonomic data. It combines phylogenetic data from 1,216 published papers with 10 source taxonomies to construct a dynamic tree of life with 2.4 million tips representing species and infraspecific taxa." ; dcterms:identifier "open-tree-of-life" ; dcterms:isReferencedBy , , , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:kg-enp.graph, kgr:open-tree-of-life.api, kgr:open-tree-of-life.bulk-download, kgr:open-tree-of-life.documentation, kgr:open-tree-of-life.phylesystem, kgr:open-tree-of-life.tnrs, kgr:open-tree-of-life.tree-browser ; schema1:identifier "open-tree-of-life" ; schema1:name "Open Tree of Life" ; doap:repository ; skos:inScheme "organisms", "taxonomy" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:open-tree-of-life-collaboration . kgr:openalex a schema1:DataSource ; rdfs:label "OpenAlex" ; dcterms:created "2026-07-01T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "OpenAlex is a free, open catalog of the global research system. It indexes scholarly works together with their authors, sources (venues such as journals and repositories), institutions, publishers, funders, and concepts/topics, and captures the relationships among them. Built and maintained by the nonprofit OurResearch, it is the successor to the discontinued Microsoft Academic Graph and is available through an open API and a full downloadable data snapshot." ; dcterms:identifier "openalex" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:onco.all_json, kgr:openalex.api, kgr:openalex.snapshot, kgr:semopenalex.graph ; schema1:name "OpenAlex" ; skos:inScheme "general", "information technology", "literature", "research funding", "scholarly communication" ; adms:status "Active" ; foaf:homepage . kgr:openbiodiv a schema1:KnowledgeGraph ; rdfs:label "OpenBiodiv" ; dcterms:created "2025-12-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "OpenBiodiv is an open-access biodiversity knowledge graph that extracts, integrates, and provides semantic access to linked open biodiversity data from scientific literature and established taxonomic backbones. It converts narrative biodiversity information into computable semantic form and maintains a comprehensive knowledge management system for biodiversity science." ; dcterms:identifier "openbiodiv" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:openbiodiv.api, kgr:openbiodiv.ontology.guide, kgr:openbiodiv.ontology.ttl, kgr:openbiodiv.portal, kgr:openbiodiv.sparql ; schema1:identifier "openbiodiv" ; schema1:name "OpenBiodiv" ; doap:repository ; skos:inScheme "biodiversity", "literature", "organisms" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:pensoft . kgr:opendataphilly a schema1:DataSource ; rdfs:label "OpenDataPhilly" ; dcterms:created "2026-07-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "OpenDataPhilly is the open data portal for the Philadelphia region, cataloging hundreds of public datasets, APIs, and applications from the City of Philadelphia and partner organizations. Datasets span public safety, health, transportation, property, and other civic domains, including the Philadelphia crime incidents dataset." ; dcterms:identifier "opendataphilly" ; dcterms:modified "2026-07-03T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:dreamkg.graph, kgr:opendataphilly.crime, kgr:opendataphilly.site ; schema1:name "OpenDataPhilly" ; skos:inScheme "general", "public health" ; adms:status "Active" ; foaf:homepage . kgr:openfda a schema1:Aggregator ; rdfs:label "openFDA" ; dcterms:created "2026-10-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "openFDA is the U.S. Food and Drug Administration's platform for public access to FDA datasets through Elasticsearch-based JSON APIs and bulk downloads. It covers drugs, devices, foods, animal and veterinary products, cosmetics and tobacco, serving adverse event reports (FAERS for drugs, MAUDE for devices, CAERS for foods), product labeling, recalls and enforcement reports, the National Drug Code directory, Drugs@FDA, the Orange Book, drug shortages, device 510(k), PMA, classification, registration and UDI data, and substance and UNII data." ; dcterms:identifier "openfda" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-03T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:klocd.portal, kgr:maude.data, kgr:mps-db.portal, kgr:ndcd.api, kgr:onco.all_json, kgr:openfda.apis, kgr:openfda.downloads, kgr:openfda.portal ; schema1:name "openFDA" ; doap:repository ; skos:altLabel "OpenFDA" ; skos:inScheme "biomedical", "clinical", "food", "nutrition", "pharmacology", "pharmacovigilance", "public health" ; adms:status "Active" ; foaf:homepage . kgr:openfema a schema1:DataSource ; rdfs:label "OpenFEMA" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "OpenFEMA is the U.S. Federal Emergency Management Agency's open-data program, providing public access to FEMA's program data. It publishes datasets covering federal disaster declarations, individual and public assistance, hazard mitigation, flood insurance, and other emergency-management programs. Data are distributed as downloadable files and through a versioned RESTful API. OpenFEMA is an upstream source for KnowWhereGraph." ; dcterms:identifier "openfema" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:knowwheregraph.graph, kgr:openfema.api, kgr:openfema.datasets ; schema1:name "OpenFEMA" ; skos:inScheme "disasters", "environment", "public health" ; adms:status "Active" ; foaf:homepage . kgr:opengwas a schema1:DataSource ; rdfs:label "IEU OpenGWAS" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "IEU OpenGWAS is a database and analytical platform that aggregates, curates, queries, and serves genome-wide association study summary datasets for Mendelian randomization, PheWAS, fine mapping, colocalisation, and related analyses." ; dcterms:identifier "opengwas" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:mrbase.api, kgr:mrbase.phewas, kgr:mrbase.twosamplemr, kgr:mrbase.twosamplemr.docs, kgr:mrbase.webapp, kgr:opengwas.api, kgr:opengwas.datasets, kgr:opengwas.portal ; schema1:name "IEU OpenGWAS" ; doap:repository ; skos:altLabel "MRC IEU OpenGWAS", "OpenGWAS" ; skos:inScheme "biomedical", "genome-wide association studies", "genomics", "precision medicine" ; adms:status "Active" ; foaf:homepage . kgr:openpredict a schema1:Aggregator ; rdfs:label "OpenPredict" ; dcterms:created "2025-11-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "OpenPredict is an NCATS Translator Knowledge Provider that provides machine learning-based predictions for drug-target interactions and drug-disease associations to support drug repurposing. OpenPredict integrates multiple biomedical knowledge graphs and applies various machine learning algorithms to predict potential therapeutic uses for existing drugs. The service offers predictions with confidence scores and provides evidence trails linking drugs to diseases through intermediate biological entities like targets and pathways." ; dcterms:identifier "openpredict" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:ars.api, kgr:ars.portal, kgr:cqs.code, kgr:openpredict.api, kgr:openpredict.openapi, kgr:openpredict.predictions, kgr:openpredict.ui ; schema1:identifier "openpredict" ; schema1:name "OpenPredict" ; doap:repository ; skos:altLabel "OpenPredict", "OpenPredict API" ; skos:inScheme "biomedical", "drug discovery", "drug repositioning", "information technology", "machine learning", "pharmacology", "precision medicine" ; skos:related "translator" ; adms:status "Active" ; foaf:homepage . kgr:openstreetmap a schema1:DataSource ; rdfs:label "OpenStreetMap" ; dcterms:created "2026-07-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "OpenStreetMap (OSM) is a collaborative, openly licensed geospatial database of the world built and maintained by a global community of contributors. It provides detailed vector data for infrastructure features including building footprints, road networks, waterways, land use, and points of interest. The data is freely available under the Open Database License. The Urban Flooding Open Knowledge Network (UF-OKN) uses OpenStreetMap building footprints and road networks as the urban-infrastructure features that it relates to their nearest river and to the streamflow that would inundate them." ; dcterms:identifier "openstreetmap" ; dcterms:license "Open Database License (ODbL) 1.0" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:openstreetmap.portal, kgr:uf-okn.graph ; schema1:name "OpenStreetMap" ; skos:inScheme "environment", "general", "geographic information systems", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:opentargets a schema1:KnowledgeGraph ; rdfs:label "Open Targets" ; dcterms:created "2025-05-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Open Targets is a collaborative effort to systematically identify and prioritise the best targets to safely and effectively treat rare and common diseases." ; dcterms:identifier "opentargets" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:bioteque.embeddings, kgr:cardiokg.neo4j, kgr:epigraphdb.graph, kgr:genecards.web.interface, kgr:opentargets.api.graphql, kgr:opentargets.api.rest, kgr:opentargets.platform, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:identifier "open-targets" ; schema1:name "Open Targets" ; doap:repository ; skos:inScheme "biomedical", "drug discovery", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:opl a schema1:Ontology ; rdfs:label "Ontology for Parasite LifeCycle" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A reference ontology for parasite life cycle stages." ; dcterms:identifier "opl" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:opl.kg-bioportal, kgr:opl.owl ; schema1:name "Ontology for Parasite LifeCycle" ; doap:repository ; skos:inScheme "organisms" ; adms:status "Active" ; foaf:homepage . kgr:opmi a schema1:Ontology ; rdfs:label "Ontology of Precision Medicine and Investigation" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Ontology of Precision Medicine and Investigation (OPMI) aims to ontologically represent and standardize various entities and relations associated with precision medicine and related investigations at different conditions." ; dcterms:identifier "opmi" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:opmi.kg-bioportal, kgr:opmi.owl ; schema1:name "Ontology of Precision Medicine and Investigation" ; doap:repository ; skos:inScheme "biomedical", "general", "precision medicine" ; adms:status "Active" ; foaf:homepage . kgr:orcid a schema1:DataSource ; rdfs:label "ORCID" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ORCID is a free, unique, persistent identifier (PID) for individuals to use as they engage in research, scholarship, and innovation activities." ; dcterms:identifier "orcid" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cm4ai_talent_kg.graph, kgr:orcid.api, kgr:orcid.docs, kgr:orcid.portal ; schema1:name "ORCID" ; doap:repository ; skos:inScheme "literature", "scholarly communication" ; adms:status "Active" ; foaf:homepage . kgr:ordo a schema1:DataSource ; rdfs:label "Orphanet Rare Disease Ontology (ORDO)" ; dcterms:created "2025-06-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Orphanet Rare Disease Ontology (ORDO) is an open-access ontology developed from the Orphanet information system, enabling complex queries of rare diseases and their epidemiological data (age of onset, prevalence, mode of inheritance) and gene-disorder functional relationships." ; dcterms:identifier "ordo" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:efo.obo, kgr:efo.owl, kgr:medgen.csv, kgr:medgen.mgconso, kgr:medgen.mgdef, kgr:medgen.mgrel, kgr:medgen.mgsat, kgr:medgen.names, kgr:medgen.ordo-history, kgr:ordo.kg-bioportal, kgr:ordo.owl, kgr:ordo.sparql, kgr:orphanet.ordo_release, kgr:rdkg.tpf, kgr:sri-reference-kg.graph, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:identifier "ordo" ; schema1:name "Orphanet Rare Disease Ontology (ORDO)" ; skos:inScheme "biomedical", "clinical", "genomics", "phenotype", "rare disease" ; adms:status "Active" ; foaf:homepage . kgr:oreganno a schema1:DataSource ; rdfs:label "ORegAnno" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ORegAnno (the Open Regulatory Annotation database) is a community-driven, literature-curated resource of regulatory regions, transcription factor binding sites, regulatory polymorphisms, and regulatory interactions across multiple species. It served as an upstream primary source for regulatory annotation resources such as DoRothEA. The original standalone interactive site (oreganno.org) is no longer operational and now redirects to the UCSC Genome Browser; the curated ORegAnno 3.0 data set lives on as a track and bulk download in the UCSC Genome Browser and is also distributed via Ensembl." ; dcterms:identifier "oreganno" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:dorothea.graph, kgr:oreganno.ucsc ; schema1:name "ORegAnno" ; skos:inScheme "gene regulation", "genomics", "systems biology" ; adms:status "Inactive" ; foaf:homepage . kgr:oregano a schema1:KnowledgeGraph ; rdfs:label "OREGANO" ; dcterms:created "2026-02-22T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The OREGANO knowledge graph integrates free biomedical databases focused on drugs, proteins, genes, and diseases to support link prediction approaches for drug repositioning and drug-target relation discovery." ; dcterms:identifier "oregano" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:oregano.docs, kgr:oregano.graph, kgr:oregano.sparql ; schema1:name "OREGANO" ; doap:repository ; skos:inScheme "biomedical", "drug discovery", "drug repositioning", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:organoiddb a schema1:DataSource ; rdfs:label "OrganoidDB" ; dcterms:created "2026-10-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "OrganoidDB is a database of curated bulk and single-cell transcriptome profiles of organoids. It holds 16,218 organoid samples (12,911 human and 3,307 mouse) collected from GEO and ArrayExpress and organized into 1,069 datasets, 145 of them single-cell RNA-seq. Primary tissue and cell line samples are included so that organoids can be compared against them, with GTEx and the Human Protein Atlas linked as references. The web interface supports gene expression search across organoid types, culture sources and protocols, sample types and developmental stages, plus correlation analysis, and datasets can be browsed with culture details, differentially expressed genes, enriched pathways and single-cell clusters. It is run by the Intelligent Bioinformatics Research Group at the Institute of Life Sciences, Chongqing Medical University." ; dcterms:hasVersion "1.0" ; dcterms:identifier "organoiddb" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-03T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:organoiddb.all-organoid-samples, kgr:organoiddb.general-samples, kgr:organoiddb.organoid-specificity-samples, kgr:organoiddb.portal ; schema1:name "OrganoidDB" ; skos:inScheme "anatomy and development", "biological systems", "biomedical", "gene expression profiling", "genomics", "single-cell analysis" ; adms:status "Active" ; foaf:homepage . kgr:orkg a schema1:KnowledgeGraph ; rdfs:label "Open Research Knowledge Graph" ; dcterms:created "2026-03-11T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Open Research Knowledge Graph (ORKG) aims to describe research papers in a structured manner. It represents research papers and their contributions as structured, machine-readable descriptions that can be explored, compared, and reused through the ORKG portal and API." ; dcterms:identifier "orkg" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:orkg.api, kgr:orkg.api-docs, kgr:orkg.docs, kgr:orkg.dump, kgr:orkg.portal, kgr:orkg.python, kgr:orkg.sparql, kgr:orkg.triplestore ; schema1:name "Open Research Knowledge Graph" ; doap:repository ; skos:altLabel "ORKG" ; skos:inScheme "literature", "scholarly communication" ; adms:status "Active" ; foaf:homepage . kgr:ornaseq a schema1:Ontology ; rdfs:label "Ontology of RNA Sequencing" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An application ontology designed to annotate next-generation sequencing experiments performed on RNA." ; dcterms:identifier "ornaseq" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ornaseq.kg-bioportal, kgr:ornaseq.owl ; schema1:name "Ontology of RNA Sequencing" ; doap:repository ; skos:inScheme "biomedical", "general", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:orphanet a schema1:DataSource ; rdfs:label "Orphanet" ; dcterms:created "2025-07-10T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Orphanet is a unique resource for information and data on rare diseases and orphan drugs, aimed at improving diagnosis, care, and treatment of patients with rare diseases. It maintains the Orphanet rare disease nomenclature (ORPHAcodes), which is essential for improving the visibility of rare diseases in health and research information systems." ; dcterms:hasVersion "December 2025" ; dcterms:identifier "orphanet" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:babel.compendia, kgr:bbmri-eric-directory.csv, kgr:bbmri-eric-directory.ttl, kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:dbnsfp.academic, kgr:dbnsfp.commercial, kgr:disgenet.data, kgr:eram.downloads, kgr:eram.web, kgr:genecards.disease.associations, kgr:genecards.web.interface, kgr:kg-ebi-gene2pheno.edges.kgx, kgr:kg-ebi-gene2pheno.edges.trapi, kgr:kg-ebi-gene2pheno.nodes.kgx, kgr:kg-idg.graph, kgr:medgen.csv, kgr:medgen.id-mappings, kgr:medgen.mgdef, kgr:medgen.ordo-history, kgr:ncatsgardkg.graph, kgr:oregano.graph, kgr:orphanet.biobanks, kgr:orphanet.biobanksnetworks, kgr:orphanet.clinicaltrials, kgr:orphanet.clinicaltrialsnetworks, kgr:orphanet.diagnostictests, kgr:orphanet.expertcenters, kgr:orphanet.expertcentersnetworks, kgr:orphanet.nomenclature, kgr:orphanet.ordo_release, kgr:orphanet.orphacode_api, kgr:orphanet.orphadata_science, kgr:orphanet.orphadataapi, kgr:orphanet.orphandrugs, kgr:orphanet.patientorganizations, kgr:orphanet.patientorganizationsnetworks, kgr:orphanet.patientregistries, kgr:orphanet.patientregistriesnetworks, kgr:orphanet.portal, kgr:orphanet.researchprojects, kgr:orphanet.researchprojectsnetworks, kgr:orphanet.scientific_knowledge_files, kgr:raras.encyclopedia, kgr:raras.portal, kgr:sri-reference-kg.graph ; schema1:identifier "orphanet" ; schema1:name "Orphanet" ; doap:repository ; skos:inScheme "biomedical", "clinical", "rare disease" ; adms:status "Active" ; foaf:homepage . kgr:orthodb a schema1:DataSource ; rdfs:label "OrthoDB" ; dcterms:created "2025-05-07T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "OrthoDB is a comprehensive database of orthologous protein-coding genes across multiple species, providing evolutionary and functional annotations of orthologous groups." ; dcterms:identifier "orthodb" ; dcterms:isReferencedBy , , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:orthodb.aa_fasta, kgr:orthodb.api.rest, kgr:orthodb.api.sparql, kgr:orthodb.cds_fasta, kgr:orthodb.gene_xrefs, kgr:orthodb.genes, kgr:orthodb.og2genes, kgr:orthodb.og_xrefs, kgr:orthodb.ogs, kgr:orthodb.site, kgr:orthodb.species ; schema1:name "OrthoDB" ; skos:inScheme "genomics", "molecular evolution", "organisms" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:sib . kgr:osv a schema1:DataSource ; rdfs:label "OSV (Open Source Vulnerabilities)" ; dcterms:created "2026-07-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "OSV (Open Source Vulnerabilities) is an open, distributed vulnerability database and API providing standardized information about known vulnerabilities in open-source software, including affected version ranges and fix metadata." ; dcterms:identifier "osv" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:osv.website, kgr:securechainkg.graph ; schema1:name "OSV (Open Source Vulnerabilities)" ; doap:repository ; skos:inScheme "information technology", "software" ; adms:status "Active" ; foaf:homepage . kgr:ovae a schema1:Ontology ; rdfs:label "Ontology of Vaccine Adverse Events" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A biomedical ontology in the domain of vaccine adverse events." ; dcterms:identifier "ovae" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ovae.kg-bioportal, kgr:ovae.owl ; schema1:name "Ontology of Vaccine Adverse Events" ; doap:repository ; skos:inScheme "biomedical", "immunology", "pharmacology", "pharmacovigilance", "vaccines" ; adms:status "Active" ; foaf:homepage . kgr:owlsim a schema1:DataSource ; rdfs:label "OWLSim Ontology Based Profile Matching" ; dcterms:created "2025-11-19T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "OWLSim is ontology-based profile matching software for calculating semantic similarity between ontology classes and individuals. The tool was used by the Monarch Initiative and related phenotype-comparison projects, and has since been replaced by Semsimian." ; dcterms:identifier "owlsim" ; dcterms:isReferencedBy ; dcterms:modified "2026-06-12T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:owlsim.owltools, kgr:owlsim.rest, kgr:owlsim.v3 ; schema1:identifier "owlsim" ; schema1:name "OWLSim Ontology Based Profile Matching" ; doap:repository ; skos:altLabel "OWLSim" ; skos:inScheme "biomedical", "genomics", "information technology", "phenotype", "systems biology" ; adms:status "Inactive" ; foaf:homepage . kgr:oxo a schema1:Aggregator ; rdfs:label "Ontology Xref Service" ; dcterms:created "2025-11-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "OxO (Ontology Xref Service) is a cross-ontology mapping service developed by EMBL-EBI's Samples, Phenotypes and Ontologies Team (SPOT). The service provides mappings between terms from different ontologies, enabling users to search for equivalent or related terms across multiple ontological resources. OxO aggregates cross-references from ontologies loaded in the Ontology Lookup Service (OLS) and enriches these with manual mappings and inference-based relationships." ; dcterms:identifier "oxo" ; dcterms:license ; dcterms:modified "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:oxo.portal ; schema1:identifier "oxo" ; schema1:name "Ontology Xref Service" ; doap:repository ; skos:altLabel "OxO" ; skos:inScheme "biological systems", "biomedical", "general" ; adms:status "Inactive" ; foaf:homepage ; foaf:maker kgr:ebi . kgr:p3db a schema1:DataSource ; rdfs:label "P3DB" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "P3DB, the Plant Protein Phosphorylation Database, is a plant phosphoproteomics resource that collects phosphorylation sites, phosphopeptides, kinases, organisms, and study datasets with search and BLAST tools." ; dcterms:identifier "p3db" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:iptmnet.ptm, kgr:p3db.datasets, kgr:p3db.portal, kgr:p3db.ptm-search ; schema1:name "P3DB" ; skos:altLabel "Plant Protein Phosphorylation Database" ; skos:inScheme "agriculture", "organisms", "plants", "post-translational modification", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:pacer a schema1:DataSource ; rdfs:label "PACER (Public Access to Court Electronic Records)" ; dcterms:created "2026-07-01T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PACER (Public Access to Court Electronic Records) is the U.S. federal judiciary's electronic public-access system for federal court case and docket records. Managed by the Administrative Office of the U.S. Courts, it provides case and docket information from U.S. district, bankruptcy, and appellate courts, including dockets, case summaries, and filed documents. Access is provided to the public for a per-page usage fee. PACER is the primary upstream source of federal court records used by downstream projects such as SCALES." ; dcterms:identifier "pacer" ; dcterms:license "U.S. Government Work (public domain records; PACER access subject to per-page usage fees)" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:pacer.case-locator, kgr:scales.graph ; schema1:name "PACER (Public Access to Court Electronic Records)" ; skos:inScheme "criminal justice", "public health" ; adms:status "Active" ; foaf:homepage . kgr:pankbase a schema1:DataSource ; rdfs:label "PanKBase" ; dcterms:created "2025-03-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PanKbase is a comprehensive, centralized resource for the study of the human pancreas and diabetes. The PanKbase collective aims to integrate diverse type 1 diabetes (T1D) datasets with expert-curated knowledge in a centralized, open-source data hub. Part of the NIH/NIDDK Human Islet Research Network (HIRN)." ; dcterms:identifier "pankbase" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:pankbase.api, kgr:pankbase.graph, kgr:pankbase.graph.api, kgr:pankbase.graph.site, kgr:pankgraph.graph ; schema1:name "PanKBase" ; doap:repository ; skos:inScheme "biomedical", "clinical", "diabetes mellitus", "genomics", "precision medicine" ; adms:status "Active" ; foaf:homepage . kgr:pankgraph a schema1:KnowledgeGraph ; rdfs:label "PanKgraph" ; dcterms:created "2026-03-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PanKgraph — PanKbase Knowledge Graph (NIDDK)" ; dcterms:identifier "pankgraph" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:pankgraph.graph, kgr:pankgraph.portal, kgr:pankgraph.sparql, kgr:pankgraph.tpf ; schema1:name "PanKgraph" ; skos:inScheme "biomedical", "diabetes mellitus", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:panorama-public a schema1:DataSource ; rdfs:label "Panorama Public" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Panorama Public is a ProteomeXchange member repository for quantitative mass spectrometry datasets processed in Skyline, covering targeted (SRM/PRM), data independent acquisition (DIA) and small molecule experiments. It runs on PanoramaWeb, a LabKey Server instance with the Panorama targeted MS modules, hosted by the MacCoss Lab at the University of Washington. Each dataset carries its own data license, CC BY 4.0 by default or CC0 1.0, and datasets that meet ProteomeXchange requirements receive PXD identifiers." ; dcterms:identifier "panorama-public" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:omicsdi.api, kgr:omicsdi.portal, kgr:panorama-public.code, kgr:panorama-public.docs, kgr:panorama-public.download-docs, kgr:panorama-public.portal, kgr:panorama-public.webdav, kgr:proteomexchange.dataset-list, kgr:proteomexchange.dataset-records, kgr:proteomexchange.proteomecentral ; schema1:name "Panorama Public" ; doap:repository ; skos:altLabel "PanoramaWeb Public" ; skos:inScheme "biomedical", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:panther a schema1:Resource ; rdfs:label "PANTHER" ; dcterms:created "2025-03-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PANTHER is a Protein ANalysis THrough Evolutionary Relationships Classification System. The mission of the PANTHER knowledgebase is to support biomedical and other research by providing comprehensive information about the evolution of protein-coding gene families, particularly protein phylogeny, function and genetic variation impacting that function." ; dcterms:identifier "panther" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:automat.panther, kgr:automat.robokopkg, kgr:babel.compendia, kgr:genecards.web.interface, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:kg-alzheimers.graph, kgr:kg-monarch.graph, kgr:kg-monarch.graph.duckdb, kgr:kg-monarch.graph.jsonl, kgr:kg-monarch.graph.jsonl.edges, kgr:kg-monarch.graph.jsonl.nodes, kgr:kg-monarch.graph.neo4j, kgr:kg-monarch.graph.neo4j.edges, kgr:kg-monarch.graph.neo4j.nodes, kgr:kg-monarch.graph.rdf, kgr:microbiomekg.api, kgr:mygene.api, kgr:pathwaycommons.biopax, kgr:pathwaycommons.downloads, kgr:pathwaycommons.gmt, kgr:pathwaycommons.sif, kgr:pathwaycommons.txt, kgr:service-kp.trapi, kgr:sri-reference-kg.graph, kgr:translator.panther.graph, kgr:translator.translator_kg.graph ; schema1:identifier "panther" ; schema1:name "PANTHER" ; doap:repository ; skos:inScheme "genomics", "molecular evolution", "protein domains", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:pao a schema1:Ontology ; rdfs:label "Plant Anatomy Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Description unavailable." ; dcterms:identifier "pao" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:pao.obo, kgr:pao.owl ; schema1:name "Plant Anatomy Ontology" ; doap:repository ; skos:inScheme "anatomy and development", "organisms", "plants" ; adms:status "Inactive" ; foaf:homepage . kgr:pathbank a schema1:DataSource ; rdfs:label "PathBank" ; dcterms:created "2026-02-26T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PathBank is an interactive, visual pathway database that provides more than 600,000 machine-readable pathways across 10 model organisms. It supports metabolomics, transcriptomics, proteomics, and systems biology workflows through searchable pathway diagrams, pathway analysis tools, and downloads in tabular, image, sequence, and pathway-exchange formats." ; dcterms:identifier "pathbank" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:obo-db-ingest.pathbank.json, kgr:obo-db-ingest.pathbank.obo, kgr:obo-db-ingest.pathbank.owl, kgr:obo-db-ingest.pathbank.sssom.tsv, kgr:obo-db-ingest.pathbank.tsv, kgr:pathbank.biopax, kgr:pathbank.downloads, kgr:pathbank.pathways.csv, kgr:pathbank.portal, kgr:pathbank.sbml, kgr:pathwaycommons.biopax, kgr:pathwaycommons.downloads, kgr:pathwaycommons.gmt, kgr:pathwaycommons.sif, kgr:pathwaycommons.txt, kgr:pathwhiz.pathways, kgr:translator.pathbank.graph, kgr:translator.translator_kg.graph ; schema1:name "PathBank" ; skos:altLabel "PathBank 2.0" ; skos:inScheme "biomedical", "metabolism", "pathways", "systems biology" ; skos:notation "FAIRsharing.3xwMon" ; adms:status "Active" ; foaf:homepage . kgr:pathophenodb a schema1:DataSource ; rdfs:label "PathoPhenoDB" ; dcterms:created "2025-05-28T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PathoPhenoDB is a database of human pathogens, the diseases and phenotypes they elicit in human organisms, and information related to drug treatments and mechanisms of drug resistance. Specifically, PathoPhenoDB contains associations between pathogens and diseases, between pathogens and phenotypes, between drugs that are approved to treat particular pathogens, and it identifies genes or proteins within pathogens that can convey resistance to particular drugs." ; dcterms:identifier "pathophenodb" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:pathophenodb.data, kgr:pathophenodb.docs, kgr:pathophenodb.web, kgr:spoke-okn.graph, kgr:spoke.graph ; schema1:identifier "path-pheno-db" ; schema1:name "PathoPhenoDB" ; doap:repository ; skos:inScheme "biomedical", "drug discovery", "host-pathogen interactions", "infectious disease", "microbiology", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:pathwaycommons a schema1:Aggregator ; rdfs:label "Pathway Commons" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Pathway Commons is a centralized web resource that aggregates biological pathway and molecular interaction data from pathway, interaction, protein, chemical, and identifier-mapping sources into BioPAX and related network formats. Its PC v14 metadata lists 26 datasource rows, 6,692 pathways, 3,579,336 molecular interactions, and 4,168,535 physical entities." ; dcterms:hasVersion "PC v14" ; dcterms:identifier "pathwaycommons" ; dcterms:isReferencedBy , , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:genecards.web.interface, kgr:genemania.networks, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:ncatsgardkg.graph, kgr:pathwaycommons.api, kgr:pathwaycommons.biopax, kgr:pathwaycommons.documentation, kgr:pathwaycommons.downloads, kgr:pathwaycommons.gmt, kgr:pathwaycommons.sif, kgr:pathwaycommons.txt, kgr:pathwaycommons.web, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv ; schema1:identifier "pathway-commons" ; schema1:name "Pathway Commons" ; doap:repository ; skos:altLabel "PC", "Pathway Commons", "PathwayCommons" ; skos:inScheme "pathways", "systems biology" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:mskcc, kgr:utoronto . kgr:pathwhiz a schema1:Resource ; rdfs:label "PathWhiz" ; dcterms:created "2025-10-31T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PathWhiz is a web-based pathway drawing and visualization tool designed for creating colorful, visually pleasing, and biologically accurate pathway diagrams that are machine-readable and interactive. PathWhiz supports a high level of biological detail including metabolites (with automated structure generation), protein complexes (with quaternary structures, covalent modifications, and cofactors), nucleic acids, membranes, subcellular structures, cells, tissues, and organs. PathWhiz has been used to generate over 700 pathway diagrams for popular databases including HMDB, DrugBank, and PathBank, and supports export to BioPAX, SBGN-ML, SBML, and PWML formats as well as high-resolution images." ; dcterms:identifier "pathwhiz" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:pathwhiz.editor, kgr:pathwhiz.guest_draw, kgr:pathwhiz.guides, kgr:pathwhiz.pathways, kgr:pathwhiz.private_draw ; schema1:identifier "pathwhiz" ; schema1:name "PathWhiz" ; skos:altLabel "PathWhiz", "PathWhiz Pathway Editor" ; skos:inScheme "biomedical", "drug discovery", "pathways" ; adms:status "Active" ; foaf:homepage . kgr:pato a schema1:Ontology ; rdfs:label "Phenotype And Trait Ontology" ; dcterms:created "2025-06-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology of phenotypic qualities (properties, attributes or characteristics)" ; dcterms:identifier "pato" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ecso.owl, kgr:efo.obo, kgr:efo.owl, kgr:nlm-ckn.graph, kgr:np-kg.graph.networkx, kgr:np-kg.graph.tsv, kgr:pato.json, kgr:pato.kg-bioportal, kgr:pato.obo, kgr:pato.owl, kgr:pato.pato-base.owl, kgr:sri-reference-kg.graph, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:identifier "pato" ; schema1:name "Phenotype And Trait Ontology" ; doap:repository ; skos:inScheme "phenotype" ; adms:status "Active" ; foaf:homepage . kgr:patric a schema1:DataSource ; rdfs:label "Pathosystems Resource Integration Center" ; dcterms:created "2025-11-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Pathosystems Resource Integration Center (PATRIC) was a bacterial bioinformatics resource center providing integrated data and analysis tools for bacterial infectious disease research. PATRIC has been succeeded by the Bacterial and Viral Bioinformatics Resource Center (BV-BRC), which continues to provide comprehensive bacterial genomics data, comparative analysis tools, and molecular characterization resources. The legacy PATRIC data and functionality have been integrated into BV-BRC." ; dcterms:identifier "patric" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:patric.api, kgr:patric.bv_brc_overview, kgr:patric.genomes, kgr:patric.web ; schema1:identifier "patric" ; schema1:name "Pathosystems Resource Integration Center" ; skos:altLabel "BV-BRC", "Bacterial and Viral Bioinformatics Resource Center", "PATRIC" ; skos:inScheme "biomedical", "genomics", "host-pathogen interactions", "infectious disease", "microbiology" ; adms:status "Inactive" ; foaf:homepage . kgr:pavs-kg a schema1:KnowledgeGraph ; rdfs:label "PAVS Knowledge Graph" ; dcterms:created "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "RDF knowledge graph from the Bio-Ontology Research Group at KAUST that represents PAVS (Phenotype-Associated Variants in Saudi Arabia), a curated database of clinical cases from Saudi Arabian rare disease cohorts. Each case links HPO-encoded phenotypes to genomic variants, genes, zygosity, pathogenicity classifications and MONDO/OMIM diagnoses, with annotations from ClinVar, ClinGen, gnomAD, Ensembl VEP, GO, GTEx and MGI. The graph also includes DDD study cases and literature phenopackets as comparators, and is served from a public Virtuoso SPARQL endpoint." ; dcterms:identifier "pavs-kg" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:pavs-kg.api, kgr:pavs-kg.code, kgr:pavs-kg.phenopackets, kgr:pavs-kg.portal, kgr:pavs-kg.sparql ; schema1:name "PAVS Knowledge Graph" ; doap:repository ; skos:altLabel "PAVS", "PAVS KG", "Phenotype-Associated Variants in Saudi Arabia" ; skos:inScheme "biomedical", "clinical", "genetic variation", "genomics", "phenotype", "rare disease" ; adms:status "Active" ; foaf:homepage . kgr:paxdb a schema1:DataSource ; rdfs:label "PaxDb" ; dcterms:created "2026-06-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PaxDb (Protein Abundance Database) is a database of whole-organism protein abundance information across organisms. It integrates and re-processes quantitative proteomics datasets to provide consistent, comparable protein abundance estimates for thousands of proteins in many species." ; dcterms:identifier "paxdb" ; dcterms:isReferencedBy ; dcterms:modified "2026-06-17T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:genecards.web.interface, kgr:omicsdi.api, kgr:omicsdi.portal, kgr:paxdb.downloads, kgr:paxdb.site ; schema1:name "PaxDb" ; skos:inScheme "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:pbpko a schema1:Ontology ; rdfs:label "Physiologically-Based Pharmacokinetic Ontology" ; dcterms:created "2026-02-20T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology for modeling and understanding of pharmacokinetics in biological systems." ; dcterms:identifier "pbpko" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:pbpko.kg-bioportal, kgr:pbpko.owl ; schema1:name "Physiologically-Based Pharmacokinetic Ontology" ; doap:repository ; skos:inScheme "chemistry and biochemistry", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:pcl a schema1:Ontology ; rdfs:label "Provisional Cell Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Cell types that are provisionally defined by experimental techniques such as single cell or single nucleus transcriptomics rather than a straightforward & coherent set of properties." ; dcterms:identifier "pcl" ; dcterms:isReferencedBy , , , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:hra-kg.graph.json, kgr:hra-kg.graph.nq, kgr:hra-kg.graph.nt, kgr:hra-kg.graph.ttl, kgr:hra-kg.graph.xml, kgr:pcl.obo, kgr:pcl.owl ; schema1:name "Provisional Cell Ontology" ; doap:repository ; skos:inScheme "biological systems", "cell biology", "phenotype", "single-cell analysis" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ebi . kgr:pco a schema1:Ontology ; rdfs:label "Population and Community Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology about groups of interacting organisms such as populations and communities" ; dcterms:identifier "pco" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:pco.kg-bioportal, kgr:pco.owl ; schema1:name "Population and Community Ontology" ; doap:repository ; skos:inScheme "ecology", "environment" ; adms:status "Active" ; foaf:homepage . kgr:pd_st a schema1:Ontology ; rdfs:label "Platynereis stage ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Description unavailable." ; dcterms:identifier "pd_st" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-08T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:name "Platynereis stage ontology" ; skos:inScheme "anatomy and development" ; adms:status "Inactive" ; foaf:homepage . kgr:pdb a schema1:DataSource ; rdfs:label "Protein Data Bank (PDB)" ; dcterms:created "2026-01-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The global archive of experimentally determined three-dimensional structures of proteins, nucleic acids, and macromolecular complexes." ; dcterms:identifier "pdb" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:genecards.web.interface, kgr:gpcrdb.api, kgr:gpcrdb.data, kgr:gpcrdb.portal, kgr:mygene.api, kgr:nde.graph, kgr:onco.all_json, kgr:pdb.archive, kgr:pdb.data-api, kgr:pdb.portal, kgr:preppi.download, kgr:rdf-portal.sparql.pdb, kgr:stitch.api, kgr:stitch.downloads, kgr:stitch.portal, kgr:string.cog.links, kgr:string.cog.links.detailed, kgr:string.database, kgr:string.protein.links, kgr:string.protein.links.detailed, kgr:string.protein.links.full, kgr:string.protein.physical.links, kgr:string.protein.physical.links.detailed, kgr:string.protein.physical.links.full, kgr:togows.rest-api ; schema1:name "Protein Data Bank (PDB)" ; skos:altLabel "PDB", "Protein Data Bank" ; skos:inScheme "protein structure", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:pdbe a schema1:Aggregator ; rdfs:label "PDBe Knowledge Base" ; dcterms:created "2025-09-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PDBe-KB (Protein Data Bank in Europe - Knowledge Base) is an open, collaborative consortium for integration and enrichment of 3D-structure data and functional annotations to enable basic and translational research. It provides comprehensive access to macromolecular structure data integrated with functional annotations from multiple sources." ; dcterms:identifier "pdbe" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:genecards.protein.structures, kgr:genecards.web.interface, kgr:goa.pdb, kgr:intact.api, kgr:intact.datasets, kgr:intact.ftp.psi25, kgr:intact.ftp.psi30, kgr:intact.ftp.psimitab, kgr:intact.ftp.psimitab.all, kgr:pdbe.download-service, kgr:pdbe.kb-api, kgr:pdbe.kb-ftp, kgr:pdbe.kb-graph-database.neo4j3, kgr:pdbe.kb-graph-database.neo4j4, kgr:pdbe.kb-manual, kgr:pdbe.kb-portal, kgr:pdbe.kb-schema, kgr:pdbe.sifts, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db ; schema1:name "PDBe Knowledge Base" ; doap:repository ; skos:inScheme "anatomy and development", "genomics", "protein structure", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:pdro a schema1:Ontology ; rdfs:label "The Prescription of Drugs Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology to describe entities related to prescription of drugs" ; dcterms:identifier "pdro" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:pdro.kg-bioportal, kgr:pdro.owl ; schema1:name "The Prescription of Drugs Ontology" ; doap:repository ; skos:inScheme "biomedical", "clinical", "information technology", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:pdsp a schema1:DataSource ; rdfs:label "Psychoactive Drug Screening Program" ; dcterms:created "2025-11-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Psychoactive Drug Screening Program (PDSP) at UNC Chapel Hill provides screening of novel psychoactive compounds for pharmacological and functional activity at cloned human or rodent CNS receptors, channels, and transporters. The PDSP Ki Database contains binding affinities for thousands of drugs and drug candidates at neuroreceptors, providing critical pharmacological data for drug discovery and neuroscience research." ; dcterms:identifier "pdsp" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , ; schema1:hasPart kgr:gpcrdb.data, kgr:pdsp.data, kgr:pdsp.data_mining, kgr:pdsp.protocols, kgr:pdsp.web, kgr:stitch.api, kgr:stitch.downloads, kgr:stitch.portal ; schema1:identifier "pdsp" ; schema1:name "Psychoactive Drug Screening Program" ; skos:altLabel "NIMH PDSP", "PDSP" ; skos:inScheme "biomedical", "drug discovery", "high-throughput screening", "neuroscience", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:pdumdv a schema1:Ontology ; rdfs:label "Platynereis Developmental Stages" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Life cycle stages for Platynereis dumerilii" ; dcterms:identifier "pdumdv" ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:pdumdv.kg-bioportal, kgr:pdumdv.obo, kgr:pdumdv.owl ; schema1:name "Platynereis Developmental Stages" ; doap:repository ; skos:inScheme "anatomy and development" ; adms:status "Inactive" ; foaf:homepage . kgr:peco a schema1:Ontology ; rdfs:label "Plant Experimental Conditions Ontology" ; dcterms:created "2025-07-10T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experiments." ; dcterms:identifier "peco" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:genophenoenvo-kg.data, kgr:peco.obo, kgr:peco.owl ; schema1:name "Plant Experimental Conditions Ontology" ; doap:repository ; skos:inScheme "agriculture", "general", "organisms", "plants" ; adms:status "Active" ; foaf:homepage . kgr:peptideatlas a schema1:DataSource ; rdfs:label "PeptideAtlas" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PeptideAtlas, from the Institute for Systems Biology (ISB), is a compendium of peptides identified in tandem mass spectrometry proteomics experiments. Raw data from public datasets are reprocessed through a uniform pipeline (the Trans-Proteomic Pipeline) and mapped to reference proteomes and genomes, producing organism- and sample-specific builds. On 2026-10-04 its build index listed 110 builds across 39 organism groups, including the Human 2026-01 build. The project also runs PASSEL, a repository for SRM experiments, and SRMAtlas, a library of targeted proteomics assays." ; dcterms:identifier "peptideatlas" ; dcterms:isReferencedBy , , ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:omicsdi.api, kgr:omicsdi.portal, kgr:peptideatlas.builds, kgr:peptideatlas.human.coordinates, kgr:peptideatlas.human.ensembl-mapping, kgr:peptideatlas.human.mysql, kgr:peptideatlas.human.peptides, kgr:peptideatlas.human.tables, kgr:peptideatlas.passel, kgr:peptideatlas.portal, kgr:peptideatlas.repository, kgr:peptideatlas.search, kgr:peptideatlas.srmatlas, kgr:proteomexchange.dataset-list, kgr:proteomexchange.dataset-records, kgr:proteomexchange.proteomecentral ; schema1:name "PeptideAtlas" ; skos:altLabel "PA", "PASSEL", "SRMAtlas" ; skos:inScheme "biomedical", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:petagraph a schema1:KnowledgeGraph ; rdfs:label "Petagraph" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Petagraph is a large-scale biomedical knowledge graph that encompasses over 32 million nodes and 118 million relationships, integrating multi-omics and clinical data. Built on the Unified Biomedical Knowledge Graph (UBKG), Petagraph leverages more than 180 ontologies and standards to embed millions of quantitative genomics data points within a richly connected annotation environment." ; dcterms:identifier "petagraph" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:petagraph.graph ; schema1:name "Petagraph" ; doap:repository ; skos:inScheme "biomedical", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:pf1600 a schema1:DataSource ; rdfs:label "pf1600 Dataset" ; dcterms:created "2026-01-15T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The pf1600 dataset is a large-scale metabolomics and trait resource spanning ~1,600 plant food samples, with accompanying taxonomy and sample metadata. It provides processed feature tables, annotations, and scripts for reproducible analyses." ; dcterms:identifier "pf1600" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:emikg.kg, kgr:emikg.sparql, kgr:emikg.web, kgr:pf1600.analysis_scripts, kgr:pf1600.archive, kgr:pf1600.massive_raw ; schema1:name "pf1600 Dataset" ; doap:repository ; skos:inScheme "chemistry and biochemistry", "food", "metabolomics", "nutrition", "organisms", "plants" ; adms:status "Active" ; foaf:homepage . kgr:pfam a schema1:DataSource ; rdfs:label "Pfam" ; dcterms:created "2025-05-28T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Pfam is a large collection of protein families, each represented by multiple sequence alignments and hidden Markov models (HMMs), providing annotations of protein domains and functional sites." ; dcterms:hasVersion "37.0" ; dcterms:identifier "pfam" ; dcterms:isReferencedBy , , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cancer-genome-interpreter.clinicalkg.graph, kgr:clinicalkg.graph, kgr:drugmechdb.graph, kgr:enrichr-kg.graph, kgr:genecards.web.interface, kgr:obo-db-ingest.pfam.clan.json, kgr:obo-db-ingest.pfam.clan.obo, kgr:obo-db-ingest.pfam.clan.owl, kgr:obo-db-ingest.pfam.clan.tsv, kgr:obo-db-ingest.pfam.json, kgr:obo-db-ingest.pfam.obo, kgr:obo-db-ingest.pfam.owl, kgr:obo-db-ingest.pfam.tsv, kgr:pfam.a.data, kgr:pfam.a.fullalignment, kgr:pfam.a.models, kgr:pfam.a.seedalignment, kgr:pfam.api, kgr:pfam.site, kgr:spoke-okn.graph, kgr:spoke.graph, kgr:string.cog.links, kgr:string.cog.links.detailed, kgr:string.database, kgr:string.protein.links, kgr:string.protein.links.detailed, kgr:string.protein.links.full, kgr:string.protein.physical.links, kgr:string.protein.physical.links.detailed, kgr:string.protein.physical.links.full ; schema1:identifier "pfam" ; schema1:name "Pfam" ; skos:inScheme "protein domains", "proteomics" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ebi . kgr:pfocr a schema1:DataSource ; rdfs:label "PFOCR" ; dcterms:created "2025-11-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Pathway Figure OCR (PFOCR) is a resource that extracts biological pathway information from figures in scientific publications using optical character recognition (OCR) and machine learning. PFOCR automatically identifies pathway diagrams in published literature, extracts gene and protein names from pathway figures, and creates structured pathway data. The resource enables discovery of pathway knowledge that exists only in figure format and is not captured in article text or structured databases." ; dcterms:identifier "pfocr" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:pfocr.api, kgr:pfocr.database_repository, kgr:pfocr.figure_info_json, kgr:pfocr.gmt, kgr:pfocr.search_json, kgr:pfocr.web, kgr:service-kp.trapi ; schema1:identifier "pfocr" ; schema1:name "PFOCR" ; doap:repository ; skos:altLabel "PFOCR", "Pathway Figure OCR" ; skos:inScheme "biomedical", "literature", "natural language processing", "pathways", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:pgdso a schema1:Ontology ; rdfs:label "Plant Growth and Development Stage" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Description unavailable." ; dcterms:identifier "pgdso" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:pgdso.owl ; schema1:name "Plant Growth and Development Stage" ; skos:inScheme "anatomy and development", "organisms", "plants" ; adms:status "Inactive" ; foaf:homepage . kgr:pgo a schema1:Ontology ; rdfs:label "Pseudogene Ontology" ; dcterms:created "2025-11-11T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Pseudogene Ontology (PGO) is an ontology for classifying and annotating pseudogenes based on their evolutionary origins, functional characteristics, and genomic features. Pseudogenes are genomic loci that resemble functional genes but have lost their coding capacity through various mechanisms including frameshift mutations, premature stop codons, or loss of regulatory elements. PGO provides a structured vocabulary for describing different types of pseudogenes (processed, duplicated, unitary) and their relationships to functional genes." ; dcterms:identifier "pgo" ; dcterms:isReferencedBy ; dcterms:modified "2026-06-27T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:name "Pseudogene Ontology" ; skos:altLabel "PGO", "pseudo" ; skos:inScheme "genomics" ; adms:status "Active" ; foaf:homepage . kgr:pgxmine a schema1:DataSource ; rdfs:label "PGxMine" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PGxMine used text mining to identify pharmacogenomic associations between chemicals and genetic variants in the biomedical literature to assist curation of PharmGKB. The system uses the Kindred relation classifier along with PubTator annotations to extract chemical-variant associations from PubMed, PubMed Central Open Access, and PubMed Central Author Manuscript Collection. The hosted viewer at pgxmine.pharmgkb.org stopped resolving after PharmGKB moved to ClinPGx (checked 2026-09-02) and the code was last updated in November 2022; the data remain on Zenodo and the code on GitHub." ; dcterms:identifier "pgxmine" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:pgxmine.code, kgr:pgxmine.collated, kgr:pgxmine.sentences, kgr:pgxmine.viewer ; schema1:identifier "pgxmine" ; schema1:name "PGxMine" ; doap:repository ; skos:altLabel "PGxMine" ; skos:inScheme "genomics", "literature", "natural language processing", "pharmacogenomics", "pharmacology", "precision medicine" ; adms:status "Inactive" ; foaf:homepage . kgr:pharmacodb a schema1:DataSource ; rdfs:label "PharmacoDB" ; dcterms:created "2025-01-10T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PharmacoDB is a comprehensive integrative pharmacogenomics database that aggregates and standardizes large-scale cancer drug screening studies to enable systematic exploration and comparison of drug response phenotypes across diverse cancer cell line models. The database addresses critical challenges in pharmacogenomics research by harmonizing disparate datasets that historically used heterogeneous formats for drug sensitivity measurements and lacked standardized identifiers for cell lines and compounds. PharmacoDB integrates multiple major cancer pharmacogenomic datasets including the Cancer Cell Line Encyclopedia (CCLE), Genomics of Drug Sensitivity in Cancer (GDSC), Cancer Therapeutics Response Portal (CTRP), and others, assembling them into a unified queryable resource. The database contains dose-response data for over 56,000 compounds tested across approximately 1,758 cancer cell lines representing 30 different tissue types, with more than 6.3 million individual drug screening experiments profiling sensitivity measurements. Users can search across all integrated studies to identify instances where a specific compound or cell line has been characterized, visualize and compare dose-response curves for particular cell line-compound pairs from different datasets, and explore patterns of drug sensitivity across tissue types. PharmacoDB provides both a user-friendly web interface for interactive browsing and data visualization, as well as a RESTful JSON API for programmatic access enabling computational workflows and large-scale analyses. The database is designed to support biomarker discovery, drug repurposing investigations, and comparative pharmacogenomics studies by providing standardized access to otherwise fragmented cancer drug screening data." ; dcterms:identifier "pharmacodb" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:bioteque.embeddings, kgr:pharmacodb.api, kgr:pharmacodb.documentation, kgr:pharmacodb.portal ; schema1:name "PharmacoDB" ; doap:repository ; skos:altLabel "BHKLAB PharmacoDB", "PharmacoDB" ; skos:inScheme "biomedical", "cancer", "genomics", "pharmacogenomics", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:pharmacotherapydb a schema1:DataSource ; rdfs:label "PharmacotherapyDB" ; dcterms:created "2025-12-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PharmacotherapyDB is a curated catalog of medical indications between small molecule compounds and complex human diseases. It was created as part of a network-based drug repurposing project and differentiates between disease-modifying (DM) and symptomatic (SYM) treatments, with each indication reviewed by multiple physicians. The initial release contains 97 diseases and 601 drugs, with 755 disease-modifying therapies, 390 symptomatic therapies, and 243 non-indications. The catalog uses standardized vocabularies (Disease Ontology and DrugBank) to facilitate data integration and adheres to pathophysiological principles." ; dcterms:identifier "pharmacotherapydb" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:alzkb.browser, kgr:alzkb.data, kgr:ehrlink.pharmacotherapydb-processing, kgr:pharmacotherapydb.catalog_xlsx, kgr:pharmacotherapydb.diseases, kgr:pharmacotherapydb.drugs, kgr:pharmacotherapydb.figshare, kgr:pharmacotherapydb.indications ; schema1:identifier "pharmacotherapydb" ; schema1:name "PharmacotherapyDB" ; skos:inScheme "biomedical", "drug discovery", "drug repositioning", "pharmacology" ; adms:status "Inactive" ; foaf:homepage . kgr:pharmdb a schema1:KnowledgeGraph ; rdfs:label "PharmDB" ; dcterms:created "2025-09-10T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PharmDB (PharmDB-K) is a pharmacological knowledge graph integrating drugs, targets, diseases, indications, and related biomedical entities to facilitate computational repositioning and network pharmacology analyses." ; dcterms:identifier "pharmdb" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:bioteque.embeddings, kgr:pharmdb.graph, kgr:pharmdb.portal ; schema1:name "PharmDB" ; skos:inScheme "biomedical", "drug discovery", "drug repositioning" ; adms:status "Orphaned" ; foaf:homepage . kgr:pharmebinet a schema1:KnowledgeGraph ; rdfs:label "PharMeBINet" ; dcterms:created "2026-04-06T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PharMeBINet is a heterogeneous pharmacological medical biochemical network that integrates biomedical data sources into a graph for studying drugs, adverse drug reactions, genes, proteins, variants, diseases, and their relationships." ; dcterms:identifier "pharmebinet" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-05-29T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:pharmebinet.browser, kgr:pharmebinet.data-sources, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv ; schema1:name "PharMeBINet" ; doap:repository ; skos:inScheme "biomedical", "drug discovery", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:pharmgkb a schema1:Resource ; rdfs:label "PharmGKB" ; dcterms:created "2025-05-01T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PharmGKB collected, curated and disseminated knowledge about clinically actionable gene-drug associations and genotype-phenotype relationships. On 2025-07-30 PharmGKB was succeeded by ClinPGx (registry id clinpgx), which unifies PharmGKB, CPIC and PharmCAT; pharmgkb.org URLs redirect to their clinpgx.org equivalents and the downloads listed here are served from api.clinpgx.org. This page is kept because many registry resources cite pharmgkb as a provenance source. Use clinpgx for the current resource." ; dcterms:identifier "pharmgkb" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:clinpgx.downloads, kgr:clinpgx.portal, kgr:genecards.pharmacogenomics, kgr:genecards.web.interface, kgr:ibkh.graph, kgr:kg-covid-19.graph, kgr:molepro.api, kgr:molepro.catalog, kgr:molepro.graph.edges, kgr:molepro.graph.nodes, kgr:molepro.trapi, kgr:mychem.api, kgr:mygene.api, kgr:obo-db-ingest.pharmgkb.disease.json, kgr:obo-db-ingest.pharmgkb.disease.obo, kgr:obo-db-ingest.pharmgkb.disease.owl, kgr:obo-db-ingest.pharmgkb.disease.sssom.tsv, kgr:obo-db-ingest.pharmgkb.disease.tsv, kgr:obo-db-ingest.pharmgkb.drug.json, kgr:obo-db-ingest.pharmgkb.drug.obo, kgr:obo-db-ingest.pharmgkb.drug.owl, kgr:obo-db-ingest.pharmgkb.drug.sssom.tsv, kgr:obo-db-ingest.pharmgkb.drug.tsv, kgr:obo-db-ingest.pharmgkb.gene.json, kgr:obo-db-ingest.pharmgkb.gene.obo, kgr:obo-db-ingest.pharmgkb.gene.owl, kgr:obo-db-ingest.pharmgkb.gene.sssom.tsv, kgr:obo-db-ingest.pharmgkb.gene.tsv, kgr:obo-db-ingest.pharmgkb.pathways.json, kgr:obo-db-ingest.pharmgkb.pathways.obo, kgr:obo-db-ingest.pharmgkb.pathways.owl, kgr:obo-db-ingest.pharmgkb.pathways.tsv, kgr:obo-db-ingest.pharmgkb.variant.json, kgr:obo-db-ingest.pharmgkb.variant.obo, kgr:obo-db-ingest.pharmgkb.variant.owl, kgr:obo-db-ingest.pharmgkb.variant.sssom.tsv, kgr:obo-db-ingest.pharmgkb.variant.tsv, kgr:oregano.graph, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:pharmgkb.automatedannotations, kgr:pharmgkb.chemicals, kgr:pharmgkb.clinicalannotations, kgr:pharmgkb.clinicalannotations.loe, kgr:pharmgkb.clinicalvariants, kgr:pharmgkb.druglabels, kgr:pharmgkb.drugs, kgr:pharmgkb.genes, kgr:pharmgkb.guidelineannotations, kgr:pharmgkb.haplotypefrequencies.allofus, kgr:pharmgkb.haplotypefrequencies.ukbb, kgr:pharmgkb.literatureoccurrences, kgr:pharmgkb.papers, kgr:pharmgkb.pathways.biopax, kgr:pharmgkb.pathways.json, kgr:pharmgkb.pathways.tsv, kgr:pharmgkb.phenotypes, kgr:pharmgkb.relationships, kgr:pharmgkb.variantannotations, kgr:pharmgkb.variants, kgr:pharmkg.graph, kgr:pubchem.substances.asn, kgr:pubchem.substances.sdf ; schema1:identifier "pharmgkb" ; schema1:name "PharmGKB" ; doap:repository ; skos:inScheme "biomedical", "chemistry and biochemistry", "genomics", "pharmacogenomics", "pharmacology", "precision medicine" ; adms:status "Inactive" ; foaf:homepage . kgr:pharmkg a schema1:KnowledgeGraph ; rdfs:label "PharmKG" ; dcterms:created "2025-08-12T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PharmKG is a multi-relational, attributed biomedical knowledge graph benchmark that integrates curated databases and literature-derived relationships to link genes, drugs (chemicals), and diseases. It contains ~500,000 typed relations across ~7,600–8,000 disambiguated entities (29 relation types), with domain-specific features for entities from multi-omics sources (e.g., gene expression, chemical structure, disease embeddings). It provides baselines for knowledge graph embedding and a neural network-based method, and supports downstream tasks such as drug repurposing and target identification." ; dcterms:identifier "pharmkg" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:pharmkg.graph ; schema1:name "PharmKG" ; doap:repository ; skos:inScheme "biomedical", "drug discovery", "drug repositioning", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:pharos a schema1:Aggregator ; rdfs:label "Pharos" ; dcterms:created "2025-10-31T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Pharos is the user interface to the Target Central Resource Database (TCRD), providing comprehensive information about protein targets with a focus on the druggable genome. Developed by the NIH Illuminating the Druggable Genome (IDG) program, Pharos classifies targets into four Target Development Levels (TDLs) - Tclin (targets with approved drugs), Tchem (targets with high-quality chemical probes), Tbio (targets with biological data), and Tdark (understudied targets with little functional knowledge). The platform integrates data from over 80 datasets covering protein structure, function, pathways, expression, diseases, drugs, ligands, and publications." ; dcterms:hasVersion "Pharos 3.19.10; TCRD 6.13.5" ; dcterms:identifier "pharos" ; dcterms:isReferencedBy , , ; dcterms:modified "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:automat.pharos, kgr:automat.robokopkg, kgr:kg-idg.graph, kgr:molepro.api, kgr:molepro.catalog, kgr:molepro.graph.edges, kgr:molepro.graph.nodes, kgr:molepro.trapi, kgr:mygene.api, kgr:ncatsgardkg.graph, kgr:pharos.api, kgr:pharos.api.docs, kgr:pharos.docs, kgr:pharos.frontend_source, kgr:pharos.graphql_server_source, kgr:pharos.portal, kgr:pharos.tcrd.download ; schema1:identifier "pharos" ; schema1:name "Pharos" ; doap:repository ; skos:altLabel "IDG Pharos", "Pharos", "TCRD", "Target Central Resource Database" ; skos:inScheme "biomedical", "drug discovery", "pharmacology", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:phaseskg a schema1:KnowledgeGraph ; rdfs:label "PHASES KG" ; dcterms:created "2026-04-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Knowledge graph Promoting Healthy Aging through Semantic Enrichment" ; dcterms:identifier "phaseskg" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:phaseskg.knowledge-graph-docs, kgr:phaseskg.sparql, kgr:phaseskg.tpf ; schema1:name "PHASES KG" ; skos:inScheme "aging", "biological systems", "biomedical" ; adms:status "Active" ; foaf:homepage . kgr:pheknowlator a schema1:KnowledgeGraph ; rdfs:label "PheKnowLator" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PheKnowLator (Phenotype Knowledge Translator; pkt_kg) is a customizable knowledge graph (KG) construction framework enabling users to build large, heterogeneous KGs that are Semantic Web compliant and amenable to OWL reasoning, generate property graphs, and export to formats compatible with popular graph toolkits. The project provides configurable build recipes (e.g., OWL, property graph), reproducible pipelines, and documentation for deployment and usage in the GitHub Wiki." ; dcterms:identifier "pheknowlator" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:mgmlink.code, kgr:np-kg.graph.networkx, kgr:np-kg.graph.tsv, kgr:pheknowlator.code, kgr:pheknowlator.doc, kgr:pheknowlator.graph ; schema1:name "PheKnowLator" ; doap:repository ; skos:inScheme "biomedical", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:phenio a schema1:Resource ; rdfs:label "An integrated ontology for Phenomics" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology for accessing and comparing knowledge concerning phenotypes across species and genetic backgrounds." ; dcterms:identifier "phenio" ; dcterms:license ; dcterms:modified "2026-06-27T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:kg-alzheimers.graph, kgr:kg-monarch.graph, kgr:kg-monarch.graph.duckdb, kgr:kg-monarch.graph.jsonl, kgr:kg-monarch.graph.jsonl.edges, kgr:kg-monarch.graph.jsonl.nodes, kgr:kg-monarch.graph.neo4j, kgr:kg-monarch.graph.neo4j.edges, kgr:kg-monarch.graph.neo4j.nodes, kgr:kg-monarch.graph.rdf, kgr:kg-monarch.phenio.semsql, kgr:phenio.graph, kgr:phenio.model, kgr:sri-reference-kg.graph ; schema1:identifier "phenio" ; schema1:name "An integrated ontology for Phenomics" ; doap:repository ; skos:inScheme "phenotype" ; adms:status "Active" ; foaf:homepage . kgr:phenomebrowser a schema1:DataSource ; rdfs:label "PhenomeBrowser" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PhenomeBrowser is a web resource from the Hoehndorf group that provides drug-phenotype and gene-phenotype associations integrated across multiple species within the PhenomeNET ecosystem. It applies ontology-based phenotype representations and cross-species semantic similarity to connect genes, drugs, diseases, and their phenotypic manifestations. PhenomeBrowser serves as the upstream source of the GP-KG knowledge graph used for drug repurposing." ; dcterms:identifier "phenomebrowser" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-08T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:gp-kg.graph, kgr:phenomebrowser.web ; schema1:name "PhenomeBrowser" ; skos:inScheme "genomics", "pharmacology", "phenotype", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:phenopacket-store a schema1:DataSource ; rdfs:label "Phenopacket Store" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Phenopacket Store is a curated collection of GA4GH Phenopackets describing individuals with rare and Mendelian disease, assembled from the medical literature by the Monarch Initiative and GA4GH community. Each phenopacket captures a case's observed and excluded phenotypic features encoded with the Human Phenotype Ontology (HPO), along with the underlying genetic variants and disease diagnosis. The collection provides standardized, machine-readable case data used to power phenotype-driven analyses such as genotype-phenotype correlation studies and diagnostic tool benchmarking." ; dcterms:identifier "phenopacket-store" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:pavs-kg.api, kgr:pavs-kg.portal, kgr:pavs-kg.sparql, kgr:phenopacket-store.release, kgr:sri-reference-kg.graph ; schema1:identifier "phenopacket-store" ; schema1:name "Phenopacket Store" ; doap:repository ; skos:inScheme "biomedical", "clinical", "genomics", "phenotype", "precision medicine", "rare disease" ; adms:status "Active" ; foaf:homepage . kgr:phewascat a schema1:Aggregator ; rdfs:label "PheWAS Catalog" ; dcterms:created "2025-09-24T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The PheWAS Catalog is an aggregator of phenome-wide association studies that systematically analyzes many phenotypes compared to single genetic variants. It aggregates results from electronic medical record (EMR) data analysis, combining genetic association data from multiple biobanks and clinical databases to enable comprehensive phenotype-genotype association discovery." ; dcterms:identifier "phewascat" ; dcterms:isReferencedBy , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:disgenet.data, kgr:phewascat.associations, kgr:phewascat.phecodes, kgr:phewascat.phecodex, kgr:phewascat.phetk, kgr:phewascat.portal, kgr:phewascat.rpackage ; schema1:name "PheWAS Catalog" ; doap:repository ; skos:inScheme "biomedical", "clinical", "electronic health records", "genome-wide association studies", "genomics", "precision medicine" ; skos:related "translator" ; adms:status "Active" ; foaf:homepage . kgr:phipo a schema1:Ontology ; rdfs:label "Pathogen Host Interaction Phenotype Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PHIPO is a formal ontology of species-neutral phenotypes observed in pathogen-host interactions." ; dcterms:identifier "phipo" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:phipo.kg-bioportal, kgr:phipo.obo, kgr:phipo.owl ; schema1:name "Pathogen Host Interaction Phenotype Ontology" ; doap:repository ; skos:inScheme "host-pathogen interactions", "microbiology", "phenotype" ; adms:status "Active" ; foaf:homepage . kgr:phosphat a schema1:DataSource ; rdfs:label "PhosPhAt" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PhosPhAt is the Arabidopsis Protein Phosphorylation Site Database, collecting experimentally identified Arabidopsis phosphorylation sites, peptide annotations, kinase-target relationships, and plant-specific phosphorylation-site prediction tools." ; dcterms:identifier "phosphat" ; dcterms:isReferencedBy , , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:iptmnet.ptm, kgr:phosphat.experimental-sites, kgr:phosphat.portal, kgr:phosphat.predictor, kgr:phosphat.protein-motif ; schema1:name "PhosPhAt" ; skos:altLabel "Arabidopsis Protein Phosphorylation Site Database" ; skos:inScheme "agriculture", "organisms", "plants", "post-translational modification", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:phosphoelm a schema1:DataSource ; rdfs:label "Phospho.ELM" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Phospho.ELM is a manually curated database of experimentally verified serine, threonine, and tyrosine phosphorylation sites in eukaryotic proteins, linking phosphorylation instances to kinases, species, sequence accessions, and literature references." ; dcterms:identifier "phosphoelm" ; dcterms:isReferencedBy , , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:iptmnet.ptm, kgr:phosphoelm.dataset, kgr:phosphoelm.phosphoblast, kgr:phosphoelm.portal, kgr:phosphoelm.webservice ; schema1:name "Phospho.ELM" ; skos:altLabel "PhosphoELM" ; skos:inScheme "post-translational modification", "proteomics" ; adms:status "Orphaned" ; foaf:homepage . kgr:phosphogrid a schema1:DataSource ; rdfs:label "PhosphoGRID" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PhosphoGRID is a curated resource of experimentally verified in vivo protein phosphorylation sites in Saccharomyces cerevisiae, including kinase and phosphatase annotations, experimental conditions, functional effects, and links to yeast resources." ; dcterms:identifier "phosphogrid" ; dcterms:isReferencedBy , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:biogrid.ptms-latest, kgr:iptmnet.ptm, kgr:phosphogrid.portal ; schema1:name "PhosphoGRID" ; skos:altLabel "Phosphorylation Site Search" ; skos:inScheme "post-translational modification", "proteomics" ; adms:status "Orphaned" ; foaf:homepage . kgr:phosphositeplus a schema1:Aggregator ; rdfs:label "PhosphoSitePlus" ; dcterms:created "2025-08-12T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PhosphoSitePlus is a comprehensive resource for experimentally validated post-translational modifications (PTMs) with emphasis on phosphorylation, ubiquitination, acetylation, methylation and more. It aggregates curated site-specific modification data, kinase–substrate relationships, protein domains, mutation impact annotations, sequence motifs, and pathway/interaction context to support signaling, proteomics, and systems biology research." ; dcterms:identifier "phosphositeplus" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:activedriverdb.downloads, kgr:cancer-genome-interpreter.clinicalkg.graph, kgr:clinicalkg.graph, kgr:epsd.download, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:iptmnet.ptm, kgr:kinace.interactions, kgr:kinace.portal, kgr:pathwaycommons.biopax, kgr:pathwaycommons.downloads, kgr:pathwaycommons.gmt, kgr:pathwaycommons.sif, kgr:pathwaycommons.txt, kgr:phosphositeplus.about, kgr:phosphositeplus.downloads, kgr:phosphositeplus.portal, kgr:ptmd.phosphorylation_pda, kgr:ptmd.total_pda, kgr:unibiomap.auxs, kgr:unibiomap.links, kgr:unibiomap.pred, kgr:unibiomap.pred.full ; schema1:identifier "psite-plus" ; schema1:name "PhosphoSitePlus" ; skos:inScheme "biomedical", "post-translational modification", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:physiome-model-repository a schema1:DataSource ; rdfs:label "Physiome Model Repository" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Physiome Model Repository (PMR) is the IUPS Physiome Project's open repository of mathematical models of physiology, run by the Auckland Bioengineering Institute. It hosts CellML models (the CellML Model Repository) along with FieldML and SED-ML files in version-controlled Git workspaces, and publishes curated, annotated views of them as exposures. On 2026-10-04 its JSON listings held 1,303 workspaces and 1,108 exposures. Public content is licensed under CC BY 3.0." ; dcterms:identifier "physiome-model-repository" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:omicsdi.api, kgr:omicsdi.portal, kgr:physiome-model-repository.api, kgr:physiome-model-repository.code, kgr:physiome-model-repository.docs, kgr:physiome-model-repository.exposures, kgr:physiome-model-repository.portal, kgr:physiome-model-repository.workspaces ; schema1:name "Physiome Model Repository" ; skos:altLabel "CellML Model Repository", "PMR", "PMR2" ; skos:inScheme "biological systems", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:pid a schema1:DataSource ; rdfs:label "Pathway Interaction Database" ; dcterms:created "2025-01-10T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Pathway Interaction Database (PID) was a highly curated collection of human molecular signaling, regulatory pathways, and key cellular processes developed through a collaboration between the US National Cancer Institute and Nature Publishing Group. The database focused specifically on cancer-relevant signaling and regulatory pathways rather than metabolic processes, providing detailed network-level representations of molecular interactions with comprehensive literature citations and evidence codes for each event. PID contained three main data collections the NCI-Nature Curated pathways representing expert-curated cancer signaling networks, imported Reactome pathways in BioPAX format, and BioCarta pathway data, together comprising 77 expert-reviewed pathways with over 4,300 manually curated interactions involving more than 2,600 proteins annotated with detailed posttranslational modifications including 7,400+ phosphorylation events. Each interaction in the NCI-Nature curated collection was associated with specific literature references from over 3,100 distinct PubMed citations and annotated with evidence codes indicating the type of experimental support. The database employed a sophisticated data model distinguishing five types of molecular events including transcription, translocation, biochemical reactions, protein modifications, and macroprocesses, with molecules characterized by posttranslational modifications, cellular locations, and activity states. PID provided powerful query capabilities enabling users to search by molecule names, construct dynamic interaction networks connecting specified molecules, overlay experimental data from gene expression studies onto pathways using batch query tools with statistical enrichment analysis, and visualize both predefined expert-curated pathways and novel networks generated computationally from the interaction database. The resource was particularly valuable for cancer research, allowing identification of parallel signaling paths, elucidation of therapy resistance mechanisms, and integration of genomic abnormalities with pathway contexts. While the original NCI-hosted PID website is no longer actively maintained and was discontinued, the complete PID dataset has been preserved and remains accessible through Pathway Commons, NDEx Bioscience Network Exchange, and as BioPAX Level 2 format exports, ensuring continued availability of this valuable curated knowledge for the research community." ; dcterms:identifier "pid" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:alzkb.browser, kgr:alzkb.data, kgr:genecards.web.interface, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:hetionet.data.edges, kgr:hetionet.data.json, kgr:hetionet.data.neo4j, kgr:hetionet.data.nodes, kgr:hetionet.hetnetpy, kgr:hetionet.neo4j, kgr:hetionet.search, kgr:msigdb.downloads.human, kgr:msigdb.downloads.mouse, kgr:ncipidkg.graph.ttl, kgr:obo-db-ingest.pid.pathway.json, kgr:obo-db-ingest.pid.pathway.obo, kgr:obo-db-ingest.pid.pathway.owl, kgr:obo-db-ingest.pid.pathway.tsv, kgr:pathwaycommons.biopax, kgr:pathwaycommons.downloads, kgr:pathwaycommons.gmt, kgr:pathwaycommons.sif, kgr:pathwaycommons.txt, kgr:spoke-okn.graph, kgr:spoke.graph, kgr:stitch.api, kgr:stitch.downloads, kgr:stitch.portal ; schema1:name "Pathway Interaction Database" ; doap:repository ; skos:altLabel "NCI-Nature PID", "PID", "Pathway Interaction Database" ; skos:inScheme "pathways", "signal transduction" ; adms:status "Inactive" ; foaf:homepage . kgr:pir a schema1:DataSource ; rdfs:label "Protein Information Resource" ; dcterms:created "2026-05-20T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Protein Information Resource (PIR) is an integrated public bioinformatics resource that supports genomic, proteomic, and systems biology research through protein databases, annotation resources, search tools, and downloadable reference datasets." ; dcterms:identifier "pir" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:mygene.api, kgr:pir.downloads, kgr:pir.portal, kgr:prokn.pir.compound.skos_exact_match.compound.edges, kgr:prokn.pir.gene.skos_exact_match.impc_gene.edges, kgr:prokn.pir.gene.skos_exact_match.impchumangene.edges, kgr:prokn.pir.impchumangene.orthologous_to.protein.edges, kgr:prokn.pir.impcmousegene.has_gene_product.protein.edges ; schema1:name "Protein Information Resource" ; skos:altLabel "PIR", "Protein Information Resource" ; skos:inScheme "genomics", "proteomics", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:pirbase a schema1:Aggregator ; rdfs:label "piRBase" ; dcterms:created "2014-01-01T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "piRBase is a manually curated database for PIWI-interacting RNAs (piRNAs), focused on piRNA functional analysis and annotation. It integrates high-throughput sequencing data from multiple organisms and provides comprehensive information about piRNA sequences, genomic locations, functional annotations, and epigenetic features." ; dcterms:identifier "pirbase" ; dcterms:isReferencedBy , , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:pirbase.browse, kgr:pirbase.cel-sequences, kgr:pirbase.dme-bed, kgr:pirbase.dme-gold, kgr:pirbase.dme-sequences, kgr:pirbase.dre-sequences, kgr:pirbase.epigenetics, kgr:pirbase.function, kgr:pirbase.genome, kgr:pirbase.hsa-bed, kgr:pirbase.hsa-gold, kgr:pirbase.hsa-grch38-bed, kgr:pirbase.hsa-sequences, kgr:pirbase.mmu-bed, kgr:pirbase.mmu-gold, kgr:pirbase.mmu-sequences, kgr:pirbase.portal, kgr:pirbase.rno-sequences, kgr:pirbase.tools, kgr:pirbase.tutorial, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db ; schema1:name "piRBase" ; skos:inScheme "genomics", "non-coding RNA" ; adms:status "Active" ; foaf:homepage . kgr:pirsf a schema1:DataSource ; rdfs:label "PIRSF" ; dcterms:created "2026-06-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PIRSF (Protein Information Resource SuperFamily) is a network classification system of proteins based on their evolutionary relationships of whole proteins. It provides a hierarchical classification reflecting both functional and evolutionary relationships among protein families." ; dcterms:identifier "pirsf" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:genecards.web.interface, kgr:pirsf.downloads, kgr:pirsf.site ; schema1:name "PIRSF" ; skos:inScheme "protein domains", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:pistoia-pgo a schema1:Ontology ; rdfs:label "Pistoia Alliance Pharma General Ontology" ; dcterms:created "2025-11-10T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Pistoia Alliance Pharma General Ontology (PGO) is a collaborative initiative to provide a shared upper-level reference ontology for the pharmaceutical industry. PGO aims to serve as a \"Rosetta Stone\" enabling semantic interoperability within and across organizations by identifying key concepts used throughout the drug development lifecycle and selecting public resources that can provide identifiers for each concept. Rather than creating new ontologies or mandating specific terminologies, PGO focuses on providing clear mechanisms to enable unambiguous declaration of the resources used and capturing the criteria for selecting semantic artifacts. The project follows FAIR principles and reuses existing semantic resources, including ontologies and controlled terminologies, as well as open source community software. The initial phase focuses on Research & Development (R&D) operations, defining core concepts and recommendations for associating controlled terminologies to service data exchange among pharmaceutical industry stakeholders. PGO is developed using LinkML for representing and documenting each type, and is supported by a consortium of major pharmaceutical companies including AstraZeneca, Chiesi Group, GSK, Merck KGaA, Novo Nordisk, Pfizer, and Hoffmann-La Roche." ; dcterms:hasVersion "1.0" ; dcterms:identifier "pistoia-pgo" ; dcterms:license ; dcterms:modified "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:pistoia-pgo.core_concepts, kgr:pistoia-pgo.core_concepts_csv, kgr:pistoia-pgo.documentation, kgr:pistoia-pgo.github, kgr:pistoia-pgo.use_cases ; schema1:name "Pistoia Alliance Pharma General Ontology" ; doap:repository ; skos:altLabel "PGO", "Pharma General Ontology" ; skos:inScheme "drug discovery", "general" ; adms:status "Active" ; foaf:homepage . kgr:plana a schema1:Ontology ; rdfs:label "planaria-ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PLANA, the planarian anatomy ontology, encompasses the anatomy and life cycle stages for both __Schmidtea mediterranea__ biotypes." ; dcterms:identifier "plana" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:plana.kg-bioportal, kgr:plana.obo, kgr:plana.owl ; schema1:name "planaria-ontology" ; doap:repository ; skos:inScheme "anatomy and development" ; adms:status "Active" ; foaf:homepage . kgr:planp a schema1:Ontology ; rdfs:label "Planarian Phenotype Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Planarian Phenotype Ontology is an ontology of phenotypes observed in the planarian Schmidtea mediterranea." ; dcterms:identifier "planp" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:planp.kg-bioportal, kgr:planp.obo, kgr:planp.owl ; schema1:name "Planarian Phenotype Ontology" ; doap:repository ; skos:inScheme "phenotype" ; adms:status "Active" ; foaf:homepage . kgr:plant-reactome a schema1:DataSource ; rdfs:label "Plant Reactome" ; dcterms:created "2025-12-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Plant Reactome is a freely-accessible, open-source pathway knowledgebase for comparative pathway analysis and systems biology in plants. It provides manually curated pathways in rice with gene-orthology based projections across 138 additional plant species." ; dcterms:hasVersion "Version 24" ; dcterms:identifier "plant-reactome" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , , , , , , , , , , , , , , , , , ; schema1:hasPart kgr:plant-reactome.api, kgr:plant-reactome.biopax, kgr:plant-reactome.mappings, kgr:plant-reactome.png, kgr:plant-reactome.portal, kgr:plant-reactome.sbgn, kgr:plant-reactome.svg ; schema1:name "Plant Reactome" ; doap:repository ; skos:inScheme "organisms", "pathways", "plants", "systems biology" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:gramene . kgr:plncdb a schema1:DataSource ; rdfs:label "PLncDB" ; dcterms:created "2025-09-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PLncDB (Plant Long noncoding RNA Database) is a comprehensive encyclopedia of plant long noncoding RNAs containing 1,246,372 lncRNAs from 80 plant species, ranging from chlorophytes to angiosperms. The database provides uniform lncRNA annotations using a standard pipeline across 13,834 RNA-Seq datasets, integrating expression patterns across tissues, developmental stages, and stress conditions. It includes epigenetic modification data (DNA methylation, histone modifications), predicted lncRNA targets (miRNA mimics and RNA-protein interactions), and tools for visualization (JBrowse, eFP Browser, EPexplorer). PLncDB also incorporates validated lncRNAs from EVLncRNAs and plant lncRNA candidates from RNAcentral." ; dcterms:identifier "plncdb" ; dcterms:isReferencedBy , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:plncdb.blast, kgr:plncdb.efp-browser, kgr:plncdb.epexplorer, kgr:plncdb.ftp, kgr:plncdb.jbrowse, kgr:plncdb.portal, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db ; schema1:name "PLncDB" ; skos:inScheme "genomics", "non-coding RNA", "organisms", "plants" ; adms:status "Active" ; foaf:homepage . kgr:plo a schema1:Ontology ; rdfs:label "Plasmodium life cycle" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Description unavailable." ; dcterms:identifier "plo" ; dcterms:modified "2026-09-08T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:plo.owl ; schema1:name "Plasmodium life cycle" ; skos:inScheme "anatomy and development" ; adms:status "Inactive" ; foaf:homepage . kgr:pmc a schema1:DataSource ; rdfs:label "PubMed Central" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PubMed Central (PMC) is NCBI's free full-text archive of biomedical and life-sciences journal literature, including article display, searchable records, article datasets, and controlled automated retrieval services for reusable PMC content." ; dcterms:identifier "pmc" ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:babel.compendia, kgr:europepmc.oa-fulltext, kgr:europepmc.portal, kgr:europepmc.rest-api, kgr:litvar.api, kgr:litvar.web_interface, kgr:metabokg.graph, kgr:nihreporter.linktables, kgr:nihreporter.publications, kgr:np-kg.graph.networkx, kgr:np-kg.graph.tsv, kgr:pmc.cloud, kgr:pmc.eutils, kgr:pmc.ftp, kgr:pmc.oa-service, kgr:pmc.oai-pmh, kgr:pmc.open-access-subset, kgr:pmc.portal, kgr:rdbridge.graph, kgr:stitch.api, kgr:stitch.downloads, kgr:stitch.portal, kgr:string.cog.links, kgr:string.cog.links.detailed, kgr:string.database, kgr:string.protein.links, kgr:string.protein.links.detailed, kgr:string.protein.links.full, kgr:string.protein.physical.links, kgr:string.protein.physical.links.detailed, kgr:string.protein.physical.links.full ; schema1:identifier "pubmed-central" ; schema1:name "PubMed Central" ; skos:altLabel "PMC", "PubMed Central" ; skos:inScheme "biomedical", "literature" ; adms:status "Active" ; foaf:homepage . kgr:pmda a schema1:DataSource ; rdfs:label "Pharmaceuticals and Medical Devices Agency" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Pharmaceuticals and Medical Devices Agency (PMDA) is Japan's regulatory agency for pharmaceuticals, medical devices, regenerative medical products, and related safety information, providing product searches, package inserts, review reports, adverse event information, and safety communications." ; dcterms:identifier "pmda" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:medi.pmda, kgr:pmda.e-package-inserts-info, kgr:pmda.english-search-index, kgr:pmda.iyaku-search, kgr:pmda.portal ; schema1:name "Pharmaceuticals and Medical Devices Agency" ; skos:altLabel "PMDA" ; skos:inScheme "biomedical", "clinical", "pharmacology", "pharmacovigilance" ; adms:status "Active" ; foaf:homepage . kgr:po a schema1:Ontology ; rdfs:label "Plant Ontology" ; dcterms:created "2025-06-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data." ; dcterms:identifier "po" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:eco-kg.graph, kgr:efo.obo, kgr:efo.owl, kgr:genophenoenvo-kg.data, kgr:po.kg-bioportal, kgr:po.obo, kgr:po.owl, kgr:skm.ckn.v1.annotations, kgr:skm.ckn.v1.graph, kgr:skm.ckn.v2.annotations, kgr:skm.ckn.v2.graph, kgr:skm.pss.live.boolnet.annotations, kgr:skm.pss.live.boolnet.graph, kgr:skm.pss.live.dot, kgr:skm.pss.live.sbgn, kgr:skm.pss.live.sbml, kgr:skm.pss.live.sif.dinar.graph, kgr:skm.pss.live.sif.original.annotations, kgr:skm.pss.live.sif.original.graph, kgr:skm.pss.live.sif.projection.annotations, kgr:skm.pss.live.sif.projection.graph ; schema1:name "Plant Ontology" ; doap:repository ; skos:inScheme "anatomy and development", "organisms", "plants" ; adms:status "Active" ; foaf:homepage . kgr:pombase a schema1:Resource ; rdfs:label "PomBase" ; dcterms:created "2025-03-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PomBase is a comprehensive database for the fission yeast Schizosaccharomyces pombe, providing structural and functional annotation, literature curation and access to large-scale data sets." ; dcterms:identifier "pombase" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , ; schema1:hasPart kgr:iptmnet.ptm, kgr:kg-alzheimers.graph, kgr:kg-monarch.graph, kgr:kg-monarch.graph.duckdb, kgr:kg-monarch.graph.jsonl, kgr:kg-monarch.graph.jsonl.edges, kgr:kg-monarch.graph.jsonl.nodes, kgr:kg-monarch.graph.neo4j, kgr:kg-monarch.graph.neo4j.edges, kgr:kg-monarch.graph.neo4j.nodes, kgr:kg-monarch.graph.rdf, kgr:neo.model, kgr:neo.obo, kgr:obo-db-ingest.pombase.json, kgr:obo-db-ingest.pombase.obo, kgr:obo-db-ingest.pombase.owl, kgr:obo-db-ingest.pombase.tsv, kgr:pombase.genes, kgr:pombase.genes-products, kgr:pombase.to-uniprot, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db, kgr:sri-reference-kg.graph ; schema1:identifier "pombase" ; schema1:name "PomBase" ; doap:repository ; skos:inScheme "genomics", "model organisms", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:poro a schema1:Ontology ; rdfs:label "Porifera Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology covering the anatomy of the taxon Porifera (sponges)" ; dcterms:identifier "poro" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:poro.kg-bioportal, kgr:poro.obo, kgr:poro.owl ; schema1:name "Porifera Ontology" ; doap:repository ; skos:inScheme "anatomy and development" ; adms:status "Active" ; foaf:homepage . kgr:ppo a schema1:Ontology ; rdfs:label "Plant Phenology Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology for describing the phenology of individual plants and populations of plants, and for integrating plant phenological data across sources and scales." ; dcterms:identifier "ppo" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:ppo.kg-bioportal, kgr:ppo.owl ; schema1:name "Plant Phenology Ontology" ; doap:repository ; skos:inScheme "organisms", "phenotype", "plants" ; adms:status "Active" ; foaf:homepage . kgr:pr a schema1:Ontology ; rdfs:label "PRotein Ontology (PRO)" ; dcterms:created "2025-06-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontological representation of protein-related entities" ; dcterms:identifier "pr" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:aopwiki-rdf.ttl, kgr:babel.compendia, kgr:drugmechdb.graph, kgr:efo.obo, kgr:efo.owl, kgr:mechreponet.kg, kgr:microbiomekg.api, kgr:neo.model, kgr:neo.obo, kgr:np-kg.graph.networkx, kgr:np-kg.graph.tsv, kgr:pheknowlator.graph, kgr:pr.obo, kgr:pr.owl, kgr:rna-kg.kg.edges, kgr:rna-kg.kg.neo4j, kgr:rna-kg.kg.nodes, kgr:sri-reference-kg.graph ; schema1:identifier "pr" ; schema1:name "PRotein Ontology (PRO)" ; doap:repository ; skos:inScheme "chemistry and biochemistry", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:predict a schema1:DataSource ; rdfs:label "PREDICT" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PREDICT is a computational drug-indication inference method and associated drug-disease gold-standard dataset introduced by Gottlieb and colleagues for large-scale drug repositioning and personalized medicine applications." ; dcterms:identifier "predict" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:pharmacotherapydb.indications, kgr:predict.article, kgr:predict.method, kgr:predict.supporting-information ; schema1:name "PREDICT" ; skos:inScheme "biomedical", "drug discovery", "drug repositioning", "pharmacology" ; adms:status "Inactive" ; foaf:homepage . kgr:prefer a schema1:Ontology ; rdfs:label "Precision Fermentation Ontology" ; dcterms:created "2026-06-12T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PREFER is an ontology designed to integrate high-throughput bioprocess data, covering operational, environmental and process parameters across different scales of a precision fermentation process, to accelerate the development and scaling of biosustainable production processes." ; dcterms:identifier "prefer" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:prefer.json, kgr:prefer.kg-bioportal, kgr:prefer.obo, kgr:prefer.owl, kgr:prefer.prefer-base.json, kgr:prefer.prefer-base.obo, kgr:prefer.prefer-base.owl ; schema1:name "Precision Fermentation Ontology" ; doap:repository ; skos:inScheme "chemistry and biochemistry", "environment", "general", "microbiology", "sustainability" ; adms:status "Active" ; foaf:homepage . kgr:preppi a schema1:DataSource ; rdfs:label "PrePPI" ; dcterms:created "2025-11-10T00:00:00+00:00"^^xsd:dateTime ; dcterms:description """PrePPI (Predicting Protein-Protein Interactions) is a computational structure-based database of predicted protein-protein interactions for the human proteome, developed by the Honig Laboratory at Columbia University. The database employs a Bayesian framework that integrates structural information with non-structural supporting evidence to predict protein-protein interactions. PrePPI uses structural modeling to generate putative protein interaction interfaces, scores these structural models, and combines the structural scores with functional clues and other evidence sources to produce confidence scores for predicted interactions. The database provides comprehensive coverage of the human interactome, going beyond experimentally determined interactions to include computationally predicted interactions with varying levels of confidence. PrePPI is particularly valuable for identifying novel protein interactions that may not yet have been experimentally validated but show promise based on structural compatibility and functional context. Users can query the database by entering UniProt accession numbers or common gene/protein names to retrieve interaction partners and supporting evidence. The resource includes a high-confidence interactome subset that can be downloaded, representing predictions with the strongest supporting evidence. PrePPI complements experimental protein interaction databases by providing structure-based predictions that can guide experimental validation efforts and inform systems biology studies of protein interaction networks. The database is freely accessible through a web interface that allows interactive exploration of predicted interactions and their confidence scores. """ ; dcterms:identifier "preppi" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:preppi.download, kgr:preppi.search ; schema1:identifier "preppi" ; schema1:name "PrePPI" ; skos:altLabel "PrePPI", "Predicting Protein-Protein Interactions" ; skos:inScheme "chemistry and biochemistry", "protein interactions", "protein structure", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:pride a schema1:DataSource ; rdfs:label "PRIDE Archive" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The PRIDE (PRoteomics IDEntifications) Archive is EMBL-EBI's public repository for mass spectrometry-based proteomics data and a founding member of the ProteomeXchange consortium. It stores raw files, peptide and protein identifications, quantification results and experimental metadata for submitted datasets, each identified by a ProteomeXchange accession (PXD). The archive held 41,886 public projects when checked on 2026-10-04." ; dcterms:identifier "pride" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:human-proteome-map.raw-data, kgr:omicsdi.api, kgr:omicsdi.portal, kgr:pride.api, kgr:pride.code, kgr:pride.docs, kgr:pride.ftp, kgr:pride.portal, kgr:proteomexchange.dataset-list, kgr:proteomexchange.dataset-records, kgr:proteomexchange.proteomecentral ; schema1:name "PRIDE Archive" ; doap:repository ; skos:altLabel "PRIDE", "PRIDE database", "PRoteomics IDEntifications Database" ; skos:inScheme "biomedical", "proteomics" ; skos:notation "FAIRsharing.e1byny" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ebi . kgr:pride-cv a schema1:Ontology ; rdfs:label "PRIDE Controlled Vocabulary" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The PRIDE Controlled Vocabulary (PRIDE CV, PRIDE ontology) is a controlled vocabulary maintained by the EMBL-EBI PRIDE team for annotating mass spectrometry proteomics submissions to the PRIDE Archive and related resources, with terms for instruments, protocols, sample processing, quantification and dataset descriptors. It is developed in OBO format on GitHub, converted to OWL, imports CHMO and EFO, and is served in the EBI Ontology Lookup Service under the prefix PRIDE." ; dcterms:identifier "pride-cv" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:pride-cv.obo, kgr:pride-cv.ols, kgr:pride-cv.ols-api, kgr:pride-cv.owl, kgr:pride-cv.repository ; schema1:name "PRIDE Controlled Vocabulary" ; doap:repository ; skos:altLabel "PRIDE CV", "PRIDE ontology", "Proteomics Identification Database Ontology" ; skos:inScheme "biomedical", "information technology", "metadata", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:primekg a schema1:KnowledgeGraph ; rdfs:label "PrimeKG" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PrimeKG (Precision Medicine Knowledge Graph) integrates 20 high-quality biomedical resources to describe 17,080 diseases with over 4 million relationships across ten major biological scales." ; dcterms:identifier "primekg" ; dcterms:license ; dcterms:modified "2026-06-27T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:primekg.graph ; schema1:identifier "primekg" ; schema1:name "PrimeKG" ; doap:repository ; skos:inScheme "biomedical", "pathways", "precision medicine", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:prism a schema1:DataSource ; rdfs:label "PRISM" ; dcterms:created "2025-11-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PRISM (Profiling Relative Inhibition Simultaneously in Mixtures) is a high-throughput drug screening technology developed by the Broad Institute that measures the sensitivity of cancer cell lines to therapeutic compounds. PRISM uses DNA barcoding to pool hundreds of cell lines together, enabling massively parallel drug screening at unprecedented scale. The platform is integrated into the Cancer Dependency Map (DepMap) project and provides comprehensive dose-response data for drug-cancer cell line interactions." ; dcterms:identifier "prism" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:bioteque.embeddings, kgr:cellminer.cellminercdb, kgr:depmap.drug_sensitivity, kgr:prism.api, kgr:prism.datasets, kgr:prism.portal, kgr:prism.primary_screen_lfc, kgr:prism.secondary_screen_dose_response ; schema1:name "PRISM" ; skos:altLabel "PRISM", "Profiling Relative Inhibition Simultaneously in Mixtures" ; skos:inScheme "biomedical", "cancer", "drug discovery", "high-throughput screening", "pharmacology", "precision medicine" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:broad . kgr:probe-miner a schema1:DataSource ; rdfs:label "Probe Miner" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Probe Miner is a public resource for the objective, quantitative, and data-driven assessment of chemical probes for protein targets, developed at the Institute of Cancer Research. It integrates large-scale, publicly available medicinal chemistry and bioactivity data to score small molecules against six objective criteria, enabling researchers to evaluate the suitability of compounds as chemical probes for a given protein target. The resource helps reduce the misuse of poor-quality chemical probes in target validation and chemical biology by surfacing potency, selectivity, and cell-based activity evidence in a transparent, reproducible way." ; dcterms:identifier "probe-miner" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-08T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:molepro.api, kgr:molepro.catalog, kgr:molepro.graph.edges, kgr:molepro.graph.nodes, kgr:molepro.trapi, kgr:probe-miner.website ; schema1:identifier "probe-miner" ; schema1:name "Probe Miner" ; skos:inScheme "chemistry and biochemistry", "drug discovery", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:proco a schema1:Ontology ; rdfs:label "Process Chemistry Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PROCO covers process chemistry, the chemical field concerned with scaling up laboratory syntheses to commercially viable processes." ; dcterms:identifier "proco" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:proco.kg-bioportal, kgr:proco.owl ; schema1:name "Process Chemistry Ontology" ; doap:repository ; skos:inScheme "chemistry and biochemistry" ; adms:status "Active" ; foaf:homepage . kgr:prodo a schema1:DataSource ; rdfs:label "Prodo Laboratories" ; dcterms:created "2026-07-01T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Prodo Laboratories, Inc. is a commercial supplier of human pancreatic islets, exocrine tissue, and related reagents for diabetes and pancreas research. Islets supplied by Prodo are used in numerous published studies whose omic data are deposited in public repositories, and Prodo is one of the islet sources integrated by PanKbase." ; dcterms:identifier "prodo" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:pankgraph.graph, kgr:prodo.site ; schema1:name "Prodo Laboratories" ; skos:inScheme "biomedical", "diabetes mellitus", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:progenomes a schema1:DataSource ; rdfs:label "proGenomes" ; dcterms:created "2026-01-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A large-scale microbial genome resource with consistent annotation, species clustering, and downloadable representative genome and protein datasets." ; dcterms:identifier "progenomes" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:metatraits.gtdb.family-summary, kgr:metatraits.gtdb.genus-summary, kgr:metatraits.gtdb.species-summary, kgr:metatraits.gtdb2ncbi, kgr:metatraits.ncbi.family-summary, kgr:metatraits.ncbi.genus-summary, kgr:metatraits.ncbi.species-summary, kgr:metatraits.ncbi2gtdb, kgr:metatraits.traits, kgr:progenomes.pg4.ncbi-taxonomy, kgr:progenomes.pg4.rep-proteins, kgr:progenomes.portal, kgr:string.cog.links, kgr:string.cog.links.detailed, kgr:string.database, kgr:string.protein.links, kgr:string.protein.links.detailed, kgr:string.protein.links.full, kgr:string.protein.physical.links, kgr:string.protein.physical.links.detailed, kgr:string.protein.physical.links.full ; schema1:name "proGenomes" ; doap:repository ; skos:altLabel "ProGenomes Database", "proGenomes" ; skos:inScheme "genomics", "microbiology" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:european-molecular-biology-laboratory-embl . kgr:progeny a schema1:DataSource ; rdfs:label "PROGENy" ; dcterms:created "2025-11-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PROGENy (Pathway RespOnsive GENes for activity inference) is a resource that leverages a large compendium of publicly available signaling perturbation experiments to yield a common core of pathway responsive genes for human and mouse. These pathway signatures, coupled with statistical methods, can be used to infer pathway activities from bulk or single-cell transcriptomics data. PROGENy is available as an R package on Bioconductor and supports analysis of both human and mouse data across 14 signaling pathways." ; dcterms:identifier "progeny" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , ; schema1:hasPart kgr:bioteque.embeddings, kgr:progeny.docs, kgr:progeny.rpackage ; schema1:name "PROGENy" ; doap:repository ; skos:altLabel "PROGENy", "Pathway RespOnsive GENes" ; skos:inScheme "genomics", "pathways", "signal transduction", "systems biology" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:saezlab . kgr:prokn a schema1:KnowledgeGraph ; rdfs:label "Protein Knowledge Network" ; dcterms:created "2026-01-23T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Protein Knowledge Network (ProKN) integrates protein-centric data with the genomic-centric datasets of the Common Fund Data Ecosystem (CFDE), spanning heterogeneous biological data types across multiple domains to foster CFDE re-use and collaboration through enhanced connectivity and data integration, enabling new capabilities for functional genomics and systems-level understanding of disease mechanisms." ; dcterms:identifier "prokn" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:prokn.api, kgr:prokn.clinvar.gene.associated_with.diseaseorphenotype.edges, kgr:prokn.downloads, kgr:prokn.emind.protein.has_variant.variant.edges, kgr:prokn.emind.variant.associated_with.disease.edges, kgr:prokn.emind.variant.impact.disease.edges, kgr:prokn.emind.variant.impact.protein.edges, kgr:prokn.explorer, kgr:prokn.glygen.aminoacid.nodes, kgr:prokn.glygen.glycoprotein.glycosylated_at.glycosylationsite.edges, kgr:prokn.glygen.glycoprotein.has_evidence.glycoproteinevidence.edges, kgr:prokn.glygen.glycoprotein.has_pro_entry.gpid2pro.edges, kgr:prokn.glygen.glycoprotein.sequence.isoform.edges, kgr:prokn.glygen.glycoprotein.sequence.protein.edges, kgr:prokn.glygen.glycoproteinevidence.citation.glycoproteincitation.edges, kgr:prokn.glygen.glycosylation.has_enzyme_protein.protein.edges, kgr:prokn.glygen.glycosylationsite.has_saccharide.glytoucan.edges, kgr:prokn.glygen.glycosylationsite.location.glygenlocation.edges, kgr:prokn.glygen.glycosyltransferasereaction.has_enzyme_protein_gr.protein.edges, kgr:prokn.glygen.glygenlocation.has_amino_acid.aminoacid.edges, kgr:prokn.glygen.glygenresidue.attached_by.glycosylation.edges, kgr:prokn.glygen.glygenresidue.has_parent.glygenresidue.edges, kgr:prokn.glygen.glytoucan.has_canonical_residue.glygenresidue.edges, kgr:prokn.glygen.glytoucan.has_glycosequence.gyglycosequence.edges, kgr:prokn.glygen.glytoucan.has_motif.glycanmotif.edges, kgr:prokn.glygen.glytoucan.is_from_source.glygensrc.edges, kgr:prokn.glygen.glytoucan.synthesized_by.glycosyltransferasereaction.edges, kgr:prokn.glygen.protein.has_isoform.isoform.edges, kgr:prokn.glygen.protein.has_isoform.protein.edges, kgr:prokn.go.goterm.is_a.goterm.edges, kgr:prokn.go.protein.acts_upstream_of.goterm.edges, kgr:prokn.go.protein.acts_upstream_of_negative_effect.goterm.edges, kgr:prokn.go.protein.acts_upstream_of_or_within.goterm.edges, kgr:prokn.go.protein.acts_upstream_of_or_within_negative_effect.goterm.edges, kgr:prokn.go.protein.acts_upstream_of_or_within_positive_effect.goterm.edges, kgr:prokn.go.protein.acts_upstream_of_positive_effect.goterm.edges, kgr:prokn.go.protein.colocalizes_with.goterm.edges, kgr:prokn.go.protein.contributes_to.goterm.edges, kgr:prokn.go.protein.enables.goterm.edges, kgr:prokn.go.protein.involved_in.goterm.edges, kgr:prokn.go.protein.is_active_in.goterm.edges, kgr:prokn.go.protein.located_in.goterm.edges, kgr:prokn.go.protein.not_acts_upstream_of_or_within.goterm.edges, kgr:prokn.go.protein.not_acts_upstream_of_or_within_negative_effect.goterm.edges, kgr:prokn.go.protein.not_colocalizes_with.goterm.edges, kgr:prokn.go.protein.not_contributes_to.goterm.edges, kgr:prokn.go.protein.not_enables.goterm.edges, kgr:prokn.go.protein.not_involved_in.goterm.edges, kgr:prokn.go.protein.not_is_active_in.goterm.edges, kgr:prokn.go.protein.not_located_in.goterm.edges, kgr:prokn.go.protein.not_part_of.goterm.edges, kgr:prokn.go.protein.part_of.goterm.edges, kgr:prokn.gtexexp.anatomy.nodes, kgr:prokn.gtexexp.gene.expressed_in.anatomy.edges, kgr:prokn.gtexexp.gtexexp.expressed_in.anatomy.edges, kgr:prokn.gtexexp.gtexexp.expressed_in.gene.edges, kgr:prokn.gtexexp.gtexexp.has_expression.expbins.edges, kgr:prokn.hgnchpo.gene.associated_with.diseaseorphenotype.edges, kgr:prokn.hgncuniprot.gene.is_protein.protein.edges, kgr:prokn.hmaz.anatomy.has_marker_gene_in_heart.gene.edges, kgr:prokn.hmaz.anatomy.has_marker_gene_in_kidney.gene.edges, kgr:prokn.hmaz.anatomy.has_marker_gene_in_liver.gene.edges, kgr:prokn.hmaz.anatomy.nodes, kgr:prokn.idgd.compound.indication.diseaseorphenotype.edges, kgr:prokn.idgd.compound.nodes, kgr:prokn.idgp.compound.bioactivity.protein.edges, kgr:prokn.idgp.compound.nodes, kgr:prokn.imex.complex.nodes, kgr:prokn.imex.protein.interacts_with.protein.edges, kgr:prokn.imex.protein.participates_in.complex.edges, kgr:prokn.impc.impcallele.impc_ensembl_id.impcmousegene.edges, kgr:prokn.impc.impchumangene.interacts_with.impchumangene.edges, kgr:prokn.impc.impchumangene.interacts_with.impcmousegene.edges, kgr:prokn.impc.impchumangene.orthologous_to.impcmousegene.edges, kgr:prokn.impc.impcmousegene.impc_mouse_allele_id.impcallele.edges, kgr:prokn.impc.impcmousegene.impc_mouse_alleles.impcallele.edges, kgr:prokn.impc.impcmousegene.interacts_with.impchumangene.edges, kgr:prokn.impc.impcmousegene.interacts_with.impcmousegene.edges, kgr:prokn.impc.impcmousegene.orthologous_to.impchumangene.edges, kgr:prokn.impc.imppublication.impc_alleles.impcallele.edges, kgr:prokn.interpro.domain.is_a.domain.edges, kgr:prokn.interpro.protein.has_domain.domain.edges, kgr:prokn.iptmnet.protein.catalyzes.ptmsite.edges, kgr:prokn.iptmnet.protein.has_site.site.edges, kgr:prokn.lincs.compound.in_similarity_relationship_with.compound.edges, kgr:prokn.lincs.compound.negatively_regulates.gene.edges, kgr:prokn.lincs.compound.positively_regulates.gene.edges, kgr:prokn.lincs_p100.experiment.perturbation_effect.ptmsite.edges, kgr:prokn.lincs_p100.perturbagen.is_used_in.experiment.edges, kgr:prokn.lincs_p100.ptmsite.is_site.site.edges, kgr:prokn.mcp, kgr:prokn.msigdb.msigdb.chr_band_contains_gene.gene.edges, kgr:prokn.msigdb.msigdb.has_marker_gene.gene.edges, kgr:prokn.msigdb.msigdb.has_signature_gene.gene.edges, kgr:prokn.msigdb.msigdb.pathway_associated_with_gene.gene.edges, kgr:prokn.msigdb.msigdb.targets_expression_of_gene.gene.edges, kgr:prokn.pir.compound.skos_exact_match.compound.edges, kgr:prokn.pir.gene.skos_exact_match.impc_gene.edges, kgr:prokn.pir.gene.skos_exact_match.impchumangene.edges, kgr:prokn.pir.impchumangene.orthologous_to.protein.edges, kgr:prokn.pir.impcmousegene.has_gene_product.protein.edges, kgr:prokn.reactome.pathway.event_of.pathway.edges, kgr:prokn.reactome.protein.participates_in.pathway.edges, kgr:prokn.sparql, kgr:prokn.tpf, kgr:prokn.uniprotkb.protein.has_site.site.edges, kgr:prokn.uniprotkb.protein.has_variant.variant.edges ; schema1:name "Protein Knowledge Network" ; skos:inScheme "genomics", "proteomics", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:propreo a schema1:Ontology ; rdfs:label "Proteomics data and process provenance" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Description unavailable." ; dcterms:identifier "propreo" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:propreo.kg-bioportal, kgr:propreo.owl ; schema1:name "Proteomics data and process provenance" ; skos:inScheme "chemistry and biochemistry", "proteomics" ; adms:status "Inactive" ; foaf:homepage . kgr:prosite a schema1:DataSource ; rdfs:label "PROSITE" ; dcterms:created "2026-06-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PROSITE is a database of protein families and domains. It consists of documentation entries describing protein domains, families and functional sites, as well as associated patterns and profiles used to identify them, hosted at the SIB Swiss Institute of Bioinformatics." ; dcterms:identifier "prosite" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:genecards.web.interface, kgr:prosite.downloads, kgr:prosite.scanprosite, kgr:prosite.site ; schema1:name "PROSITE" ; skos:inScheme "chemistry and biochemistry", "protein domains", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:protcid a schema1:DataSource ; rdfs:label "ProtCID" ; dcterms:created "2025-05-28T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Protein Common Interface Database (ProtCID) provides comprehensive, PDB-wide structural information on protein interactions, identifying and clustering interfaces observed in multiple crystal forms of homologous proteins." ; dcterms:hasVersion "3.0" ; dcterms:identifier "protcid" ; dcterms:isReferencedBy , , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:protcid.database, kgr:protcid.docs, kgr:protcid.site, kgr:spoke-okn.graph, kgr:spoke.graph ; schema1:name "ProtCID" ; skos:inScheme "chemistry and biochemistry", "protein interactions", "protein structure", "proteomics" ; skos:related "core" ; adms:status "Active" ; foaf:homepage . kgr:proteomehd a schema1:DataSource ; rdfs:label "ProteomeHD" ; dcterms:created "2026-02-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ProteomeHD is a proteomics resource centered on protein co-regulation evidence across perturbation experiments. It provides scripts and data from a human proteome co-regulation map used to identify protein functions and to support integrated protein association resources." ; dcterms:identifier "proteomehd" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:proteomehd.data, kgr:proteomehd.intact_interactions, kgr:proteomehd.reactome_tp_fp, kgr:proteomehd.uniprot_annotations, kgr:string.cog.links, kgr:string.cog.links.detailed, kgr:string.database, kgr:string.protein.links, kgr:string.protein.links.detailed, kgr:string.protein.links.full, kgr:string.protein.physical.links, kgr:string.protein.physical.links.detailed, kgr:string.protein.physical.links.full ; schema1:name "ProteomeHD" ; doap:repository ; skos:inScheme "proteomics", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:proteomexchange a schema1:Aggregator ; rdfs:label "ProteomeXchange" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ProteomeXchange is a consortium of mass spectrometry proteomics data repositories (PRIDE, PeptideAtlas/PASSEL, MassIVE, jPOST, iProX and Panorama Public) that share common submission and dissemination guidelines and assign PXD accessions to public datasets. Its ProteomeCentral portal indexes the datasets announced by all member repositories and provides per-dataset XML and JSON records, a full dataset listing, and the PROXI web service API." ; dcterms:identifier "proteomexchange" ; dcterms:isReferencedBy , , ; dcterms:license ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:omicsdi.api, kgr:omicsdi.portal, kgr:proteomexchange.dataset-list, kgr:proteomexchange.dataset-records, kgr:proteomexchange.guidelines, kgr:proteomexchange.portal, kgr:proteomexchange.proteomecentral, kgr:proteomexchange.proxi-api, kgr:proteomexchange.rss, kgr:proteomexchange.submission-docs ; schema1:name "ProteomeXchange" ; skos:altLabel "PX", "ProteomeCentral" ; skos:inScheme "information technology", "metadata", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:proteomicsdb a schema1:DataSource ; rdfs:label "ProteomicsDB" ; dcterms:created "2026-06-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ProteomicsDB is a multi-omics and multi-organism resource for life science research, originally built to expedite the identification of the human proteome and to enable its use across the scientific community. It integrates quantitative proteomics, transcriptomics, and drug-sensitivity data with interactive analysis tools." ; dcterms:identifier "proteomicsdb" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:genecards.web.interface, kgr:proteomicsdb.api, kgr:proteomicsdb.site ; schema1:name "ProteomicsDB" ; skos:inScheme "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:proteopedia a schema1:DataSource ; rdfs:label "Proteopedia" ; dcterms:created "2026-06-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Proteopedia is a collaborative, 3D web-encyclopedia of proteins and other biomolecules. It provides interactive, structure-based pages that bridge the three-dimensional structure and the function of macromolecules, accessible to students, educators, and researchers." ; dcterms:identifier "proteopedia" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:genecards.web.interface, kgr:proteopedia.site ; schema1:name "Proteopedia" ; skos:inScheme "chemistry and biochemistry", "protein structure", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:proton a schema1:Ontology ; rdfs:label "PROTON (PROTo ONtology)" ; dcterms:created "2025-12-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PROTON (PROTo ONtology) is a lightweight upper-level ontology developed by Ontotext in the EU SEKT project. It is split into System, Top, Extent and Knowledge Management modules, covering named entities such as people, organizations and locations, temporal and quantitative concepts, and information resources, and was used for information extraction, semantic annotation and linked data integration. Version 3.0 (Beta) added a Linked Open Data extension mapped to DBpedia, Freebase and GeoNames. It has not been updated since about 2012, and the Ontotext homepage now redirects to a missing page on graphwise.ai." ; dcterms:hasVersion "3.0 Beta" ; dcterms:identifier "proton" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:openbiodiv.ontology.ttl, kgr:proton.browser, kgr:proton.documentation, kgr:proton.ontology, kgr:proton.top ; schema1:name "PROTON (PROTo ONtology)" ; skos:altLabel "PROTON 3.0", "PROTON Top", "PROTo ONtology" ; skos:inScheme "general" ; adms:status "Inactive" ; foaf:homepage ; foaf:maker kgr:ontotext . kgr:prov-o a schema1:Ontology ; rdfs:label "PROV-O" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PROV-O is the W3C PROV Ontology, an OWL2 ontology for representing provenance information and mapping the PROV data model into RDF/OWL." ; dcterms:identifier "prov-o" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:metabokg.graph, kgr:metabokg.schema, kgr:prov-o.owl, kgr:prov-o.spec ; schema1:name "PROV-O" ; skos:altLabel "PROV Ontology", "W3C PROV Ontology" ; skos:inScheme "general", "information technology", "metadata" ; adms:status "Active" ; foaf:homepage . kgr:prsatlas a schema1:DataSource ; rdfs:label "PRS Atlas" ; dcterms:created "2025-12-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The PRS Atlas is a comprehensive resource analyzing 162 polygenic risk scores (PRS) derived from genome-wide association studies against 551 heritable traits from the UK Biobank study (N=334,398). The atlas was developed to highlight putative causal relationships across the human phenome using Mendelian randomization approaches. PRS were constructed using independent SNPs (p<5×10⁻⁵) to evaluate associations with complex traits, providing insights into disease susceptibility and potential causal risk factors. The resource includes a web application for querying and visualizing associations between genetic liability and diverse health outcomes." ; dcterms:identifier "prsatlas" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:epigraphdb.graph, kgr:prsatlas.dryad, kgr:prsatlas.results_5e05, kgr:prsatlas.results_5e08 ; schema1:name "PRS Atlas" ; skos:altLabel "Polygenic Risk Score Atlas" ; skos:inScheme "biomedical", "genome-wide association studies", "genomics" ; adms:status "Inactive" ; foaf:homepage . kgr:psdo a schema1:Ontology ; rdfs:label "Performance Summary Display Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Ontology to reproducibly study visualizations of clinical performance" ; dcterms:identifier "psdo" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:psdo.kg-bioportal, kgr:psdo.owl ; schema1:name "Performance Summary Display Ontology" ; doap:repository ; skos:inScheme "biomedical", "clinical", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:pso a schema1:Ontology ; rdfs:label "Plant Stress Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Plant Stress Ontology describes biotic and abiotic stresses that a plant may encounter." ; dcterms:identifier "pso" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:pso.kg-bioportal, kgr:pso.obo, kgr:pso.owl ; schema1:name "Plant Stress Ontology" ; doap:repository ; skos:inScheme "agriculture", "organisms", "plants" ; adms:status "Active" ; foaf:homepage . kgr:psygenet a schema1:DataSource ; rdfs:label "PsyGeNET" ; dcterms:created "2025-07-12T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PsyGeNET is a knowledge resource on psychiatric disorders and their associated genes, integrating expert-curated and text-mined data from the literature. It provides gene-disease associations for psychiatric disorders, supporting research in psychiatric genetics and genomics." ; dcterms:hasVersion "2.0" ; dcterms:identifier "psygenet" ; dcterms:isReferencedBy , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:disgenet.data, kgr:psygenet.genedisease, kgr:psygenet.psygenet2r ; schema1:name "PsyGeNET" ; skos:inScheme "biomedical", "genomics", "mental disorders", "neuroscience" ; adms:status "Inactive" ; foaf:homepage . kgr:ptmd a schema1:DataSource ; rdfs:label "PTMD" ; dcterms:created "2026-05-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PTMD 2.0 is a human post-translational modification and disease association resource that integrates experimentally supported PTM-disease associations with potential associations and disease-protein annotations." ; dcterms:hasVersion "2.0" ; dcterms:identifier "ptmd" ; dcterms:isReferencedBy , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:ptmd.downloads, kgr:ptmd.phosphorylation_pda, kgr:ptmd.total_pda, kgr:ptmd.upregulation_pda, kgr:ptmd.web ; schema1:name "PTMD" ; skos:inScheme "biomedical", "post-translational modification", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:pubchem a schema1:DataSource ; rdfs:label "PubChem" ; dcterms:created "2025-05-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PubChem is an open chemistry database that collects information on chemical structures, identifiers, chemical and physical properties, biological activities, patents, health, safety, toxicity data, and other information." ; dcterms:identifier "pubchem" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-07-14T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:alzkb.browser, kgr:alzkb.data, kgr:babel.compendia, kgr:biobricks-pubchem-annotations.graph, kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:biomarker.bkg.edges.compound, kgr:biomarker.bkg.nodes.compound, kgr:chemid.pubchem-guide, kgr:chemid.pubchem-source, kgr:dsstoxdb.downloads, kgr:foodb.data.csv, kgr:foodb.data.json, kgr:foodb.data.mysql, kgr:foodb.data.xml, kgr:foodb.web, kgr:forum.api, kgr:forum.graph.dump, kgr:forum.void, kgr:forum.webapp, kgr:genecards.web.interface, kgr:gp-kg.graph, kgr:gtrx.data, kgr:icees-kg.graph, kgr:icees-kg.metadata, kgr:icees-kg.trapi, kgr:klocd.portal, kgr:markerdb.api, kgr:markerdb.chemicals.tsv, kgr:microbiomekg.api, kgr:micromap.api, kgr:molepro.api, kgr:molepro.catalog, kgr:molepro.graph.edges, kgr:molepro.graph.nodes, kgr:molepro.trapi, kgr:mps-db.portal, kgr:mychem.api, kgr:ncatsgardkg.graph, kgr:onco.all_json, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:pharmkg.graph, kgr:pubchem.bioassay.asn, kgr:pubchem.bioassay.xml, kgr:pubchem.compounds.asn, kgr:pubchem.compounds.sdf, kgr:pubchem.pug.rest, kgr:pubchem.substances.asn, kgr:pubchem.substances.sdf, kgr:rdf-portal.sparql.pubchem, kgr:repohub.sample-info.tsv, kgr:reprotox-kg.data, kgr:reprotox-kg.portal, kgr:stitch.api, kgr:stitch.downloads, kgr:stitch.portal, kgr:suppkg.source-data, kgr:tera.chebi-to-mesh-csv, kgr:unibiomap.auxs, kgr:unibiomap.compound_desc, kgr:unibiomap.links, kgr:unibiomap.pred, kgr:unibiomap.pred.full ; schema1:identifier "pubchem" ; schema1:name "PubChem" ; doap:repository ; skos:inScheme "biomedical", "chemistry and biochemistry" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ncbi . kgr:pubmed a schema1:Aggregator ; rdfs:label "PubMed and MEDLINE" ; dcterms:created "2025-10-31T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PubMed is a free search engine accessing primarily the MEDLINE database of references and abstracts on life sciences and biomedical topics, maintained by the United States National Library of Medicine (NLM) at the National Institutes of Health (NIH). MEDLINE is NLM's premier bibliographic database containing more than 31 million references to journal articles indexed with Medical Subject Headings (MeSH). PubMed comprises more than 39 million citations for biomedical literature from MEDLINE, life science journals, and online books, with citations including links to full-text content from PubMed Central and publisher web sites. The database is updated daily and covers publications from the 1950s to the present." ; dcterms:identifier "pubmed" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:acukg.csv, kgr:acukg.json, kgr:acukg.rdf, kgr:amyco.annotations, kgr:atom.kg, kgr:atom.pipeline, kgr:babel.compendia, kgr:cacao.api, kgr:cacao.go-annotations, kgr:cacao.gowiki, kgr:cacao.portal, kgr:dbptm.downloads, kgr:dbsno.downloads, kgr:ecrin-mdr.api, kgr:ecrin-mdr.portal, kgr:entrez.eutils, kgr:europepmc.portal, kgr:europepmc.rest-api, kgr:foodb.data.csv, kgr:foodb.data.json, kgr:foodb.data.mysql, kgr:foodb.data.xml, kgr:foodb.web, kgr:forum.api, kgr:forum.graph.dump, kgr:forum.void, kgr:forum.webapp, kgr:gendr.data, kgr:gendr.expression-signatures, kgr:genecards.literature, kgr:genecards.web.interface, kgr:genereviews.titles, kgr:glkb.site, kgr:gnbr.graph, kgr:hald.aging-biomarkers.json, kgr:hald.browser, kgr:hald.entities.csv, kgr:hald.entity-info.json, kgr:hald.literature-info.json, kgr:hald.longevity-biomarkers.json, kgr:hald.relation-info.json, kgr:hald.roles.csv, kgr:ickg.graph-data, kgr:ikraph.code, kgr:ikraph.graph, kgr:ikraph.graphdata, kgr:ikraph.site, kgr:indra.cogex.code, kgr:klocd.portal, kgr:litvar.api, kgr:litvar.web_interface, kgr:medgen.csv, kgr:medgen.pubmed-links, kgr:medkg.site, kgr:metabokg.graph, kgr:micromap.api, kgr:multiomics-kp.graph, kgr:myaura.graph, kgr:ncbigene.gene2pubmed, kgr:nihreporter.linktables, kgr:nihreporter.publications, kgr:nlm-ckn.graph, kgr:np-kg.graph.networkx, kgr:np-kg.graph.tsv, kgr:omnicorp.api, kgr:omnicorp.cooccurrence, kgr:phosphoelm.dataset, kgr:pubmed-knowledge-graph.website, kgr:pubmed.advanced.search, kgr:pubmed.baseline, kgr:pubmed.clinical.queries, kgr:pubmed.dtd, kgr:pubmed.eutils, kgr:pubmed.help, kgr:pubmed.portal, kgr:pubmed.updates, kgr:rdf-portal.sparql.ncbi, kgr:reprotox-kg.data, kgr:reprotox-kg.portal, kgr:rlims-p.portal, kgr:rlims-p.text-mining-service, kgr:service-kp.trapi, kgr:spoke-okn.graph, kgr:spoke.graph, kgr:stitch.api, kgr:stitch.downloads, kgr:stitch.portal, kgr:suppkg.docs, kgr:suppkg.source-data, kgr:tbkg.data, kgr:tbkg.osimertinib_case_study, kgr:togows.rest-api, kgr:ttd.biomarker-disease, kgr:ttd.drug-disease, kgr:ttd.target-compound, kgr:ttd.target-disease, kgr:ttd.target-drug, kgr:ttd.targets-raw ; schema1:identifier "pubmed" ; schema1:name "PubMed and MEDLINE" ; doap:repository ; skos:altLabel "MEDLARS", "MEDLINE", "MEDLINE via PubMed", "PubMed" ; skos:inScheme "biomedical", "clinical", "literature" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ncbi . kgr:pubmed-knowledge-graph a schema1:KnowledgeGraph ; rdfs:label "PubMed Knowledge Graph" ; dcterms:created "2026-07-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The PubMed Knowledge Graph (PKG) is a biomedical knowledge graph built from PubMed that connects papers, authors, bio-entities, affiliations, citations, and research projects, with author name disambiguation and entity linking. PKG 2.0 additionally connects patents and clinical trials." ; dcterms:identifier "pubmed-knowledge-graph" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cm4ai_talent_kg.graph, kgr:pubmed-knowledge-graph.website ; schema1:name "PubMed Knowledge Graph" ; skos:inScheme "biomedical", "literature", "scholarly communication" ; adms:status "Active" ; foaf:homepage . kgr:pubtator a schema1:DataSource ; rdfs:label "PubTator" ; dcterms:created "2025-05-15T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "PubTator 3.0 is an AI-powered biomedical literature resource that uses state-of-the-art AI techniques to provide semantic and relation searches for key biomedical entities like proteins, genetic variants, diseases and chemicals. It offers over one billion entity and relation annotations across approximately 36 million PubMed abstracts and 6 million full-text articles from the PMC open access subset, updated weekly." ; dcterms:identifier "pubtator" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:emind.json, kgr:emind.site, kgr:genecards.web.interface, kgr:gnbr.graph, kgr:iptmnet.ptm, kgr:litvar.api, kgr:litvar.web_interface, kgr:pubtator.api, kgr:pubtator.bulk, kgr:pubtator.site, kgr:rdf-portal.sparql.ncbi ; schema1:identifier "pubtator" ; schema1:name "PubTator" ; doap:repository ; skos:inScheme "biomedical", "genomics", "literature", "natural language processing", "pharmacology" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ncbi . kgr:pw a schema1:Ontology ; rdfs:label "Pathway ontology" ; dcterms:created "2025-08-20T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A controlled vocabulary for annotating gene products to pathways." ; dcterms:identifier "pw" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:np-kg.graph.networkx, kgr:np-kg.graph.tsv, kgr:pheknowlator.graph, kgr:pw.kg-bioportal, kgr:pw.obo, kgr:pw.owl, kgr:rna-kg.kg.edges, kgr:rna-kg.kg.neo4j, kgr:rna-kg.kg.nodes ; schema1:name "Pathway ontology" ; doap:repository ; skos:inScheme "biological systems", "pathways" ; adms:status "Active" ; foaf:homepage . kgr:pypi a schema1:DataSource ; rdfs:label "Python Package Index (PyPI)" ; dcterms:created "2026-07-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Python Package Index (PyPI) is the official third-party software repository for the Python programming language, hosting metadata and distributable artifacts for Python packages." ; dcterms:identifier "pypi" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:pypi.website, kgr:securechainkg.graph ; schema1:name "Python Package Index (PyPI)" ; skos:inScheme "information technology", "software" ; adms:status "Active" ; foaf:homepage . kgr:qptm a schema1:DataSource ; rdfs:label "qPTM" ; dcterms:created "2026-05-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "qPTM is a quantitative post-translational modification resource supporting analysis of PTM-related biological knowledge." ; dcterms:identifier "qptm" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:qptm.web ; schema1:name "qPTM" ; skos:inScheme "post-translational modification", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:rampdb a schema1:DataSource ; rdfs:label "RaMPDB" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "RaMP-DB (Relational database of Metabolomic Pathways) is a multi-sourced integrated database with comprehensive annotations on biological pathways, structure/chemistry, disease and ontology annotations for genes, proteins, and metabolites. RaMP-DB provides a framework for single and batch queries of annotations, and for performing chemical and biological pathway enrichment analyses on multi-omic datasets." ; dcterms:identifier "rampdb" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:rampdb.api, kgr:rampdb.database ; schema1:identifier "rampdb" ; schema1:name "RaMPDB" ; skos:altLabel "RaMP-DB", "RaMPDB", "Relational database of Metabolomic Pathways" ; skos:inScheme "biomedical", "chemistry and biochemistry", "metabolism", "metabolomics", "pathways", "systems biology" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ncats-rampdb . kgr:rapdb a schema1:DataSource ; rdfs:label "Rice Annotation Project Database" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Rice Annotation Project Database (RAP-DB) provides curated genome annotation for the rice species Oryza sativa (Nipponbare), built on the IRGSP-1.0 reference assembly by the Rice Annotation Project together with the National Agriculture and Food Research Organization (NARO). It integrates gene structures, functional annotations, transcript and protein information, and supporting evidence through both an interactive web interface and bulk download files. A central resource is the RAP-MSU locus identifier mapping, which links RAP gene IDs to the corresponding MSU (Michigan State University) Rice Genome Annotation Project locus IDs. RAP-DB serves as the upstream primary source for eco-KG." ; dcterms:identifier "rapdb" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:eco-kg.graph, kgr:rapdb.downloads, kgr:rapdb.portal ; schema1:name "Rice Annotation Project Database" ; skos:inScheme "agriculture", "genomics", "organisms", "plants" ; adms:status "Active" ; foaf:homepage . kgr:raras a schema1:KnowledgeGraph ; rdfs:label "Raras" ; dcterms:created "2026-05-26T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Raras is a Brazilian Portuguese-language rare disease knowledge platform and knowledge graph that connects diseases, phenotypes, genes, and patient-facing information. The platform presents a rare disease encyclopedia and knowledge map spanning more than 10,000 diseases, 11,000 phenotypes, and 5,000 genes." ; dcterms:identifier "raras" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:raras.encyclopedia, kgr:raras.portal ; schema1:name "Raras" ; skos:inScheme "biomedical", "genomics", "rare disease" ; adms:status "Active" ; foaf:homepage . kgr:rbo a schema1:Ontology ; rdfs:label "Radiation Biology Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "RBO is an ontology for the effects of radiation on biota in terrestrial and space environments." ; dcterms:identifier "rbo" ; dcterms:license ; dcterms:modified "2026-06-27T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:rbo.obo, kgr:rbo.owl, kgr:rbo.rbo-base.json, kgr:rbo.rbo-base.obo, kgr:rbo.rbo-base.owl ; schema1:name "Radiation Biology Ontology" ; doap:repository ; skos:inScheme "environment" ; adms:status "Active" ; foaf:homepage . kgr:rdbridge a schema1:KnowledgeGraph ; rdfs:label "RDBridge" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Rare Disease Bridge (RDBridge) offers search functions for genes, potential drugs, pathways, literature, and medical imaging data that will support mechanistic research, drug development, diagnosis, and treatment for rare diseases." ; dcterms:identifier "rdbridge" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:rdbridge.graph, kgr:rdbridge.literaturedatabase, kgr:rdbridge.webinterface ; schema1:name "RDBridge" ; doap:repository ; skos:inScheme "biomedical", "clinical", "precision medicine", "rare disease" ; adms:status "unresponsive" ; foaf:homepage . kgr:rdf-portal a schema1:Aggregator ; rdfs:label "RDF Portal" ; dcterms:created "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "RDF Portal is a repository of quality-reviewed life science datasets in RDF, maintained by the Database Center for Life Science (DBCLS, Japan) and formerly run by the National Bioscience Database Center (NBDC) as the NBDC RDF Portal. It hosts 67 datasets (about 231.6 billion triples when checked on 2026-10-05), from Japanese projects and from international sources such as UniProt, PubChem, ChEMBL, Ensembl and NCBI databases. Data are available through SPARQL endpoints grouped by provider, a GraphQL API, an MCP server (TogoMCP) and bulk RDF downloads. Licenses are set per dataset and listed on each dataset's page." ; dcterms:identifier "rdf-portal" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:rdf-portal.data-submission, kgr:rdf-portal.datasets, kgr:rdf-portal.graphql, kgr:rdf-portal.manual, kgr:rdf-portal.mcp, kgr:rdf-portal.ntriples, kgr:rdf-portal.portal, kgr:rdf-portal.sparql.ddbj, kgr:rdf-portal.sparql.ebi, kgr:rdf-portal.sparql.kero, kgr:rdf-portal.sparql.ncbi, kgr:rdf-portal.sparql.pdb, kgr:rdf-portal.sparql.primary, kgr:rdf-portal.sparql.pubchem, kgr:rdf-portal.sparql.sib ; schema1:name "RDF Portal" ; skos:altLabel "DBCLS RDF Portal", "NBDC RDF Portal" ; skos:inScheme "biomedical", "chemistry and biochemistry", "genomics", "information technology", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:rdkg a schema1:KnowledgeGraph ; rdfs:label "Rare Disease Knowledge Graph" ; dcterms:created "2026-03-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "RDKG is an open knowledge graph for rare diseases that integrates standardized disease identifiers and cross-references to support discovery and evidence synthesis." ; dcterms:identifier "rdkg" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:rdkg.tpf ; schema1:name "Rare Disease Knowledge Graph" ; skos:inScheme "biomedical", "clinical", "rare disease" ; adms:status "Active" ; foaf:homepage . kgr:rdp a schema1:DataSource ; rdfs:label "Ribosomal Database Project" ; dcterms:created "2025-09-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Ribosomal Database Project (RDP) provided ribosome-related data services, including quality-controlled, aligned and annotated rRNA sequences, phylogenetic trees, and analysis tools for Bacterial, Archaeal, and Fungal rRNA. The RDP website is no longer available, but stand-alone tools and classifiers remain accessible via Sourceforge and community tutorials." ; dcterms:identifier "rdp" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , ; schema1:hasPart kgr:rdp.classifier, kgr:rdp.tools, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db ; schema1:name "Ribosomal Database Project" ; doap:repository ; skos:inScheme "genomics", "non-coding RNA" ; adms:status "unresponsive" ; foaf:homepage . kgr:re3data a schema1:Aggregator ; rdfs:label "re3data" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "re3data (Registry of Research Data Repositories) is a global registry of research data repositories from all academic disciplines, launched in 2012 and operated by DataCite. Each repository is described with a detailed metadata schema covering its subjects, content types, access and upload conditions, data licenses, persistent identifier systems, certification and responsible institutions, and receives a re3data identifier and DOI. Metadata are available through a web portal, a REST API returning XML and a daily bulk XML export, all released under CC0." ; dcterms:identifier "re3data" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:bioregistry.registry.json, kgr:bioregistry.sssom, kgr:re3data.api, kgr:re3data.api-docs, kgr:re3data.export, kgr:re3data.portal, kgr:re3data.schema, kgr:re3data.schema-docs ; schema1:name "re3data" ; skos:altLabel "Registry of Research Data Repositories", "re3data.org" ; skos:inScheme "information technology", "literature", "metadata", "scholarly communication" ; adms:status "Active" ; foaf:homepage . kgr:reacto a schema1:Resource ; rdfs:label "Reactome Entity Ontology (REACTO)" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Representation of entities in Reactome" ; dcterms:identifier "reacto" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:reacto.go-lego-reacto.owl, kgr:reacto.owl ; schema1:name "Reactome Entity Ontology (REACTO)" ; doap:repository ; skos:inScheme "pathways" ; adms:status "Active" ; foaf:homepage . kgr:reactome a schema1:DataSource ; rdfs:label "Reactome" ; dcterms:created "2025-03-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Reactome is a comprehensive, curated, and peer-reviewed pathway database representing human biological processes. It integrates information on biological molecules including proteins, small molecules, and RNA, organizing them into networks of functional interactions organized as pathways. With sophisticated graph database backend and multiple data access formats, Reactome is an essential resource for systems biology, functional genomics, drug discovery, and biomedical research, providing insights into gene function in the context of cellular and organismal processes." ; dcterms:identifier "reactome" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , ; schema1:hasPart kgr:alzkb.browser, kgr:alzkb.data, kgr:automat.reactome, kgr:automat.robokopkg, kgr:babel.compendia, kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:bioteque.embeddings, kgr:cam-kp.reactome-cams, kgr:cancer-genome-interpreter.clinicalkg.graph, kgr:cardiokg.neo4j, kgr:cfde-gse.genesets, kgr:cfde-gse.graph, kgr:clinicalkg.graph, kgr:ctd.chem_pathways_enriched, kgr:ctd.diseases_pathways, kgr:ctd.genes_pathways, kgr:ctd.pathways, kgr:date.archive, kgr:drugmechdb.graph, kgr:enrichr-kg.graph, kgr:epigraphdb.graph, kgr:genecards.pathway.data, kgr:genecards.web.interface, kgr:genemania.networks, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:hetionet.data.edges, kgr:hetionet.data.json, kgr:hetionet.data.neo4j, kgr:hetionet.data.nodes, kgr:hetionet.hetnetpy, kgr:hetionet.neo4j, kgr:hetionet.search, kgr:humannet.network, kgr:humannet.network.symbol, kgr:ibkh.graph, kgr:indra.cogex.code, kgr:kg-alzheimers.graph, kgr:kg-idg.graph, kgr:kg-monarch.graph, kgr:kg-monarch.graph.duckdb, kgr:kg-monarch.graph.jsonl, kgr:kg-monarch.graph.jsonl.edges, kgr:kg-monarch.graph.jsonl.nodes, kgr:kg-monarch.graph.neo4j, kgr:kg-monarch.graph.neo4j.edges, kgr:kg-monarch.graph.neo4j.nodes, kgr:kg-monarch.graph.rdf, kgr:mechreponet.kg, kgr:medkg.site, kgr:micromap.api, kgr:molepro.api, kgr:molepro.catalog, kgr:molepro.graph.edges, kgr:molepro.graph.nodes, kgr:molepro.trapi, kgr:msigdb.downloads.human, kgr:msigdb.downloads.mouse, kgr:mygene.api, kgr:obo-db-ingest.bigg.metabolite.sssom.tsv, kgr:obo-db-ingest.reactome.json, kgr:obo-db-ingest.reactome.obo, kgr:obo-db-ingest.reactome.owl, kgr:obo-db-ingest.reactome.tsv, kgr:obo-db-ingest.rhea.sssom.tsv, kgr:oregano.graph, kgr:pathwaycommons.biopax, kgr:pathwaycommons.downloads, kgr:pathwaycommons.gmt, kgr:pathwaycommons.sif, kgr:pathwaycommons.txt, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:pheknowlator.graph, kgr:plant-reactome.biopax, kgr:plant-reactome.mappings, kgr:plant-reactome.png, kgr:plant-reactome.svg, kgr:primekg.graph, kgr:prokn.reactome.pathway.event_of.pathway.edges, kgr:prokn.reactome.protein.participates_in.pathway.edges, kgr:proteomehd.data, kgr:proteomehd.reactome_tp_fp, kgr:pubchem.substances.asn, kgr:pubchem.substances.sdf, kgr:rampdb.database, kgr:rdf-portal.sparql.ebi, kgr:reactome.api, kgr:reactome.api.docs, kgr:reactome.biopax, kgr:reactome.browser, kgr:reactome.data.human, kgr:reactome.flat, kgr:reactome.go-associations.txt, kgr:reactome.graphdb.archive, kgr:reactome.mysql.main, kgr:reactome.mysql.stable_ids, kgr:reactome.neo4j, kgr:reactome.pathways.go-terms.txt, kgr:reactome.pathways.txt, kgr:reactome.rdf, kgr:reactome.sbml, kgr:rna-kg.kg.edges, kgr:rna-kg.kg.neo4j, kgr:rna-kg.kg.nodes, kgr:rtx-kg2.graph.edges, kgr:rtx-kg2.graph.nodes, kgr:rtx-kg2.neo4j, kgr:service-kp.trapi, kgr:spoke-okn.graph, kgr:spoke.graph, kgr:sri-reference-kg.graph, kgr:stitch.api, kgr:stitch.downloads, kgr:stitch.portal, kgr:string.cog.links, kgr:string.cog.links.detailed, kgr:string.database, kgr:string.protein.links, kgr:string.protein.links.detailed, kgr:string.protein.links.full, kgr:string.protein.physical.links, kgr:string.protein.physical.links.detailed, kgr:string.protein.physical.links.full, kgr:ubkg.csv, kgr:ubkg.neo4j, kgr:unibiomap.auxs, kgr:unibiomap.links, kgr:unibiomap.pathway_desc, kgr:unibiomap.pred, kgr:unibiomap.pred.full ; schema1:identifier "reactome" ; schema1:name "Reactome" ; doap:repository ; skos:inScheme "biomedical", "pathways", "systems biology" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ebi . kgr:reconx a schema1:DataSource ; rdfs:label "ReconX" ; dcterms:created "2026-06-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ReconX refers to the Recon series of genome-scale reconstructions of human metabolism, beginning with Recon 1 - the global reconstruction of the human metabolic network based on genomic and bibliomic data. These reconstructions account for thousands of metabolic reactions, metabolites, and gene-protein-reaction associations, providing a computable, constraint-based model of human metabolism. The reconstructions are reused by pathway aggregators and are maintained through the Virtual Metabolic Human (VMH) and BiGG Models resources." ; dcterms:identifier "reconx" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:pathwaycommons.biopax, kgr:pathwaycommons.downloads, kgr:pathwaycommons.gmt, kgr:pathwaycommons.sif, kgr:pathwaycommons.txt, kgr:reconx.model, kgr:reconx.vmh ; schema1:name "ReconX" ; skos:altLabel "Recon", "Recon 1", "Recon X" ; skos:inScheme "chemistry and biochemistry", "genomics", "metabolism", "pathways", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:rediportal a schema1:DataSource ; rdfs:label "REDIportal" ; dcterms:created "2025-09-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "REDIportal is a specialized database of A-to-I RNA editing events, integrating ~16 million sites from GTEx and TCGA with links to Ensembl, RNAcentral, UniProt, and PRIDE. The portal supports search by genomic position, sample (GTEx/TCGA), dsRNA modules, and gene view, and reports AEI/REI indices and a deep-learning-based reliability score (REDInet)." ; dcterms:identifier "rediportal" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:rediportal.portal, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db ; schema1:name "REDIportal" ; doap:repository ; skos:inScheme "genomics" ; adms:status "Active" ; foaf:homepage . kgr:redrugs a schema1:KnowledgeGraph ; rdfs:label "ReDrugs" ; dcterms:created "2025-11-22T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ReDrugs is a probabilistic knowledge graph for drug repositioning that integrates drug-target, protein-protein, and disease-gene interactions from multiple databases. The system uses evidence-weighted nanopublications to assign confidence scores to interactions based on experimental methods and manual curation. ReDrugs was designed to identify novel drug candidates for diseases, particularly melanoma, by filtering and analyzing systems biology networks with probabilistic methods. The platform included both a web interface and API for exploring molecular interaction networks. The hosted web interface, API, and data archive (formerly at redrugs.tw.rpi.edu and data.rpi.edu) are no longer accessible; the source code remains available on GitHub." ; dcterms:identifier "redrugs" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:redrugs.source ; schema1:name "ReDrugs" ; doap:repository ; skos:altLabel "ReDrugS" ; skos:inScheme "biomedical", "drug discovery", "drug repositioning", "pharmacology", "systems biology" ; adms:status "Inactive" ; foaf:homepage . kgr:redu a schema1:Aggregator ; rdfs:label "ReDU" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ReDU (Reanalysis of Data User Interface) is a metadata-driven resource for finding, selecting, and reanalyzing public tandem mass spectrometry data at repository scale. It bridges GNPS analysis workflows with MassIVE public mass spectrometry datasets and harmonized sample metadata." ; dcterms:identifier "redu" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:metabokg.graph, kgr:metabokg.rml_mappings, kgr:redu.dashboard, kgr:redu.docs ; schema1:name "ReDU" ; doap:repository ; skos:altLabel "Pan-ReDU", "ReDU", "Reanalysis of Data User Interface" ; skos:inScheme "chemistry and biochemistry", "metabolomics", "microbiology" ; adms:status "Active" ; foaf:homepage . kgr:refseq a schema1:DataSource ; rdfs:label "RefSeq" ; dcterms:created "2025-07-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The NCBI Reference Sequence Database (RefSeq) provides a comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein sequences for naturally occurring molecules of the central dogma." ; dcterms:identifier "refseq" ; dcterms:isReferencedBy , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:cancer-genome-interpreter.clinicalkg.graph, kgr:clinicalkg.graph, kgr:dbnsfp.academic, kgr:dbnsfp.commercial, kgr:genecards.gene.annotations, kgr:genecards.web.interface, kgr:mygene.api, kgr:ncbigene.gene2refseq, kgr:ncbigene.gene_refseq_uniprotkb_collab, kgr:oma.mapping.refseq, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:string.cog.links, kgr:string.cog.links.detailed, kgr:string.database, kgr:string.protein.links, kgr:string.protein.links.detailed, kgr:string.protein.links.full, kgr:string.protein.physical.links, kgr:string.protein.physical.links.detailed, kgr:string.protein.physical.links.full ; schema1:name "RefSeq" ; doap:repository ; skos:inScheme "genomics" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ncbi . kgr:regl a schema1:DataSource ; rdfs:label "Richards Effector Gene List" ; dcterms:created "2026-02-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Richards Effector Gene List (REGL) provides the results of the Effector Index (Ei), a machine-learning method that prioritizes the likely causal (effector) target genes at genome-wide association study (GWAS) loci. Developed by the Richards Lab at McGill University, the Ei was trained and validated against positive-control gene sets derived from Mendelian disease genes and approved drug targets across 12 common diseases and quantitative traits, using genomic features such as coding or transcript-altering variants, distance to gene, and open-chromatin-based metrics. It is integrated into the NCATS Biomedical Data Translator as a source for linking genetic association signals to their probable effector genes." ; dcterms:identifier "regl" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:regl.docs ; schema1:identifier "regl" ; schema1:name "Richards Effector Gene List" ; skos:inScheme "biomedical", "drug discovery", "genome-wide association studies", "genomics" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:mcgill-genepi . kgr:reliefweb a schema1:DataSource ; rdfs:label "ReliefWeb" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ReliefWeb is the humanitarian information service operated by the United Nations Office for the Coordination of Humanitarian Affairs (UN OCHA). It aggregates situation reports, disaster and crisis updates, maps, infographics, and humanitarian job and training announcements from thousands of trusted sources worldwide. Its content is openly accessible through the ReliefWeb website and a public REST API covering reports, disasters, jobs, and training records. ReliefWeb is an upstream data source for the KnowWhereGraph project." ; dcterms:identifier "reliefweb" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:knowwheregraph.graph, kgr:reliefweb.api, kgr:reliefweb.site ; schema1:name "ReliefWeb" ; skos:inScheme "disasters", "environment", "public health" ; adms:status "Active" ; foaf:homepage . kgr:remap a schema1:DataSource ; rdfs:label "ReMap" ; dcterms:created "2026-05-21T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ReMap is a curated regulatory genomics resource that integrates public DNA-binding sequencing experiments to produce high-quality catalogs of transcriptional regulator binding regions across human, mouse, Drosophila, and Arabidopsis." ; dcterms:identifier "remap" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , , , ; schema1:hasPart kgr:chea-kg.graph, kgr:chea-kg.libraries, kgr:chea.libraries, kgr:dorothea.graph, kgr:remap.api, kgr:remap.downloads, kgr:remap.portal ; schema1:name "ReMap" ; skos:inScheme "gene regulation", "genomics", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:repodb a schema1:DataSource ; rdfs:label "RepoDB" ; dcterms:created "2025-07-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "RepoDB is a standard dataset of drug repositioning successes and failures that can be used to fairly and reproducibly benchmark computational repositioning methods. The database contains approved drugs, their indications, and clinical trial outcomes." ; dcterms:identifier "repodb" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:bioteque.embeddings, kgr:repodb.full_dataset, kgr:repodb.web_interface, kgr:service-kp.trapi ; schema1:identifier "repodb" ; schema1:name "RepoDB" ; skos:inScheme "biomedical", "clinical", "drug discovery", "drug repositioning", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:repohub a schema1:DataSource ; rdfs:label "Drug Repurposing Hub" ; dcterms:created "2025-09-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Drug Repurposing Hub is a curated and annotated collection of FDA-approved drugs, clinical trial drugs, and selected pre-clinical tool compounds from the Broad Institute. The collection contains 7,423 unique compounds targeting 2,255 protein targets, with annotations for 775 drug indications and extensive metadata including structures, mechanisms, and therapeutic areas." ; dcterms:identifier "repohub" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:bioteque.embeddings, kgr:molepro.api, kgr:molepro.catalog, kgr:molepro.graph.edges, kgr:molepro.graph.nodes, kgr:molepro.trapi, kgr:repohub.about, kgr:repohub.case-studies, kgr:repohub.data-portal, kgr:repohub.drug-info, kgr:repohub.drug-info.tsv, kgr:repohub.followup-compounds, kgr:repohub.intake-policy, kgr:repohub.portal, kgr:repohub.repo1-library, kgr:repohub.sample-info, kgr:repohub.sample-info.tsv, kgr:repohub.screening-info, kgr:repohub.screening-library, kgr:translator.drug_rep_hub.graph, kgr:translator.translator_kg.graph ; schema1:identifier "drug-repurposing-hub" ; schema1:name "Drug Repurposing Hub" ; skos:inScheme "biomedical", "drug discovery", "drug repositioning", "pharmacology" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:broad-cdot, kgr:broad-institute . kgr:reprotox-kg a schema1:KnowledgeGraph ; rdfs:label "ReproTox-KG" ; dcterms:created "2025-09-23T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ReproTox-KG is a knowledge graph for structural birth defects and reproductive toxicology that integrates literature-derived and chemical evidence to support exploration of drug-birth defect relationships." ; dcterms:identifier "reprotox-kg" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-05-28T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:reprotox-kg.code, kgr:reprotox-kg.data, kgr:reprotox-kg.portal, kgr:reprotox-kg.schema ; schema1:name "ReproTox-KG" ; doap:repository ; skos:inScheme "biomedical", "drug discovery", "toxicology" ; adms:status "Active" ; foaf:homepage . kgr:resid a schema1:Ontology ; rdfs:label "Protein covalent bond" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "For the description of covalent bonds in proteins." ; dcterms:identifier "resid" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:resid.owl ; schema1:name "Protein covalent bond" ; skos:inScheme "chemistry and biochemistry", "post-translational modification", "proteomics" ; adms:status "Inactive" ; foaf:homepage . kgr:retriever a schema1:Aggregator ; rdfs:label "BioPack Retriever" ; dcterms:created "2025-12-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Retriever is an NCATS Biomedical Data Translator Knowledge Provider (infores:retriever) from the DOGSURF team that answers TRAPI queries directly against two data tiers: a Tier 0 graph engine (Gandalf) and a Tier 1 Elasticsearch index built from the merged Translator KG. It serves as an intermediary for the Shepherd reasoning system, deduplicating subqueries, caching results and centralizing identifier normalization." ; dcterms:identifier "retriever" ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:retriever.api, kgr:retriever.code, kgr:retriever.docs, kgr:shepherd.api, kgr:shepherd.aragorn.api, kgr:shepherd.arax.api, kgr:shepherd.bte.api, kgr:shepherd.sipr.api ; schema1:identifier "retriever" ; schema1:name "BioPack Retriever" ; doap:repository ; skos:altLabel "Retriever" ; skos:inScheme "biomedical" ; adms:status "Active" ; foaf:homepage . kgr:rex a schema1:Ontology ; rdfs:label "Physico-chemical process" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology of physico-chemical processes, i.e. physico-chemical changes occurring in course of time." ; dcterms:identifier "rex" ; dcterms:modified "2026-09-08T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:rex.kg-bioportal, kgr:rex.owl ; schema1:name "Physico-chemical process" ; skos:inScheme "chemistry and biochemistry" ; adms:status "Orphaned" ; foaf:homepage . kgr:rfam a schema1:DataSource ; rdfs:label "Rfam" ; dcterms:created "2025-10-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Rfam is a comprehensive database of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance models. The database provides curated information for over 4,000 non-coding RNA families and is widely used for RNA annotation, genome analysis, and as training data for machine learning models. Release 15.0 includes expanded coverage with 26,106 genomes, improved 3D structure integration, complete microRNA synchronization with miRBase, enhanced Gene Ontology annotations, and comprehensive viral RNA families." ; dcterms:identifier "rfam" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:genecards.web.interface, kgr:rfam.api, kgr:rfam.cm-models, kgr:rfam.docs, kgr:rfam.fasta, kgr:rfam.ftp, kgr:rfam.full-alignments, kgr:rfam.pdb-mappings, kgr:rfam.portal, kgr:rfam.public-db, kgr:rfam.seed-alignments, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db ; schema1:name "Rfam" ; skos:inScheme "genomics", "non-coding RNA" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ebi . kgr:rgd a schema1:DataSource ; rdfs:label "Rat Genome Database" ; dcterms:created "2025-12-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Rat Genome Database (RGD) curates and integrates rat genomic and phenotype data, and provides tools for genomics, physiology and functional genomics in rats. RGD contains comprehensive data on genes, QTLs, strains, and genomic elements for rat, human, mouse, chinchilla, dog, cat, pig, bonobo, squirrel, green monkey, and naked mole rat. The database includes extensive ontology annotations (RDO, CMO, ChEBI, EFO, GO, HP, MMO, MP, PW, RS, VT, XCO), variant information, pathway data, and disease relationships." ; dcterms:identifier "rgd" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:babel.compendia, kgr:disgenet.data, kgr:genecards.web.interface, kgr:kg-alzheimers.graph, kgr:neo.model, kgr:neo.obo, kgr:obo-db-ingest.rgd.json, kgr:obo-db-ingest.rgd.obo, kgr:obo-db-ingest.rgd.owl, kgr:obo-db-ingest.rgd.sssom.tsv, kgr:obo-db-ingest.rgd.tsv, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db, kgr:sri-reference-kg.graph ; schema1:identifier "rgd" ; schema1:name "Rat Genome Database" ; doap:repository ; skos:altLabel "RGD" ; skos:inScheme "genomics", "model organisms", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:rhea a schema1:DataSource ; rdfs:label "Rhea" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Rhea is an expert-curated knowledgebase of chemical and transport reactions of biological interest." ; dcterms:identifier "rhea" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:babel.compendia, kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:kg-microbe.graph.biomedical, kgr:kg-microbe.graph.biomedical-function, kgr:kg-microbe.graph.core, kgr:kg-microbe.graph.function, kgr:kg-microbe.graph.raw, kgr:microbiomekg.api, kgr:obo-db-ingest.rhea.json, kgr:obo-db-ingest.rhea.obo, kgr:obo-db-ingest.rhea.owl, kgr:obo-db-ingest.rhea.sssom.tsv, kgr:obo-db-ingest.rhea.tsv, kgr:rdf-portal.sparql.sib, kgr:service-kp.trapi, kgr:swisslipid.enzymes ; schema1:identifier "rhea" ; schema1:name "Rhea" ; skos:inScheme "chemistry and biochemistry", "enzymes" ; adms:status "Active" ; foaf:homepage . kgr:ribocentre a schema1:DataSource ; rdfs:label "Ribocentre" ; dcterms:created "2025-09-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Ribocentre is a comprehensive database containing information about natural ribozymes, including sequences, structures, catalytic mechanisms, and applications. It provides searchable and browsable access to ribozyme research data with interactive 2D and 3D visualizations." ; dcterms:identifier "ribocentre" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ribocentre.portal, kgr:ribocentre.publications, kgr:ribocentre.ribozymes, kgr:ribocentre.search, kgr:ribocentre.structures, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db ; schema1:name "Ribocentre" ; skos:altLabel "RiboCentre" ; skos:inScheme "genomics", "non-coding RNA" ; adms:status "Active" ; foaf:homepage . kgr:ribovision a schema1:DataSource ; rdfs:label "RiboVision" ; dcterms:created "2025-10-27T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "RiboVision is a comprehensive webserver suite for visualization and analysis of ribosomal RNA structures, designed to integrate phylogenetic, structural, and evolutionary information about ribosomes in multiple dimensions. It provides interactive tools for exploring ribosomal RNA sequences, secondary structures, 3D structures, and associated data." ; dcterms:identifier "ribovision" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ribovision.2d-maps, kgr:ribovision.2d-viewer, kgr:ribovision.3d-structures, kgr:ribovision.3d-viewer, kgr:ribovision.about, kgr:ribovision.advanced-features, kgr:ribovision.alignments, kgr:ribovision.basic-navigation, kgr:ribovision.chemical-modifications, kgr:ribovision.data-documentation, kgr:ribovision.examples, kgr:ribovision.expansion-segments, kgr:ribovision.helices, kgr:ribovision.msa-viewer, kgr:ribovision.nucleotide-frequencies, kgr:ribovision.phylogeny-browser, kgr:ribovision.portal, kgr:ribovision.protein-contacts, kgr:ribovision.sequences, kgr:ribovision.shannon-entropy, kgr:ribovision.twincons, kgr:ribovision.user-upload-guide, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db ; schema1:name "RiboVision" ; skos:inScheme "genomics", "non-coding RNA" ; adms:status "Active" ; foaf:homepage . kgr:rlims-p a schema1:DataSource ; rdfs:label "RLIMS-P" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "RLIMS-P, the Rule-based Literature Mining System for Protein Phosphorylation, is a biomedical text-mining system that extracts protein kinases, substrates, phosphorylation sites, and evidence text from phosphorylation-related literature." ; dcterms:identifier "rlims-p" ; dcterms:isReferencedBy , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:efip.text-mining-system, kgr:iptmnet.ptm, kgr:rlims-p.annotation-guidelines, kgr:rlims-p.portal, kgr:rlims-p.text-mining-service ; schema1:name "RLIMS-P" ; skos:altLabel "Rule-based Literature Mining System for Protein Phosphorylation" ; skos:inScheme "biomedical", "literature", "natural language processing", "post-translational modification", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:rna-kg a schema1:KnowledgeGraph ; rdfs:label "RNA-KG" ; dcterms:created "2025-08-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology-based KG for representing interactions involving RNA molecules." ; dcterms:identifier "rna-kg" ; dcterms:isReferencedBy , , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:rna-kg.kg.edges, kgr:rna-kg.kg.neo4j, kgr:rna-kg.kg.nodes ; schema1:name "RNA-KG" ; doap:repository ; skos:inScheme "biomedical", "drug discovery", "genomics", "non-coding RNA" ; adms:status "Active" ; foaf:homepage . kgr:rnacentral a schema1:Aggregator ; rdfs:label "RNAcentral" ; dcterms:created "2025-07-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "RNAcentral is the international non-coding RNA (ncRNA) sequence database that aggregates and harmonizes ncRNA sequences and annotations from expert databases across all domains of life. It provides comprehensive search, browse, programmatic access, and bulk downloads for sequences, secondary structures, and cross-references." ; dcterms:identifier "rnacentral" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:genecards.web.interface, kgr:genomickb.graph, kgr:goa.ftp, kgr:mechreponet.kg, kgr:neo.model, kgr:neo.obo, kgr:ribocentre.search, kgr:rna-kg.kg.edges, kgr:rna-kg.kg.neo4j, kgr:rna-kg.kg.nodes, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db ; schema1:identifier "rnacentral" ; schema1:name "RNAcentral" ; skos:inScheme "genomics", "non-coding RNA" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ebi . kgr:rnadisease a schema1:DataSource ; rdfs:label "RNADisease" ; dcterms:created "2026-05-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "RNADisease is a database of RNA-disease associations including multiple RNA types and disease evidence annotations." ; dcterms:identifier "rnadisease" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:rnadisease.web ; schema1:name "RNADisease" ; skos:inScheme "biomedical", "genomics", "non-coding RNA" ; adms:status "Active" ; foaf:homepage . kgr:rnainter a schema1:DataSource ; rdfs:label "RNAInter" ; dcterms:created "2026-05-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "RNAInter is a database of RNA-associated interactions including RNA-RNA and RNA-protein interaction relationships." ; dcterms:identifier "rnainter" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:rnainter.web ; schema1:name "RNAInter" ; skos:inScheme "genomics", "non-coding RNA" ; adms:status "Active" ; foaf:homepage . kgr:rnao a schema1:Ontology ; rdfs:label "RNA ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Controlled vocabulary pertaining to RNA function and based on RNA sequences, secondary and three-dimensional structures." ; dcterms:identifier "rnao" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:rnao.kg-bioportal, kgr:rnao.obo, kgr:rnao.owl ; schema1:name "RNA ontology" ; doap:repository ; skos:inScheme "chemistry and biochemistry", "genomics", "non-coding RNA" ; adms:status "Inactive" ; foaf:homepage . kgr:ro a schema1:Ontology ; rdfs:label "Relation Ontology" ; dcterms:created "2025-06-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Relationship types shared across multiple ontologies" ; dcterms:identifier "ro" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:brain-cell-kg.repository, kgr:chr.model.owl, kgr:ecso.owl, kgr:efo.obo, kgr:efo.owl, kgr:hra-kg.graph.json, kgr:hra-kg.graph.nq, kgr:hra-kg.graph.nt, kgr:hra-kg.graph.ttl, kgr:hra-kg.graph.xml, kgr:np-kg.graph.networkx, kgr:np-kg.graph.tsv, kgr:pheknowlator.graph, kgr:ro.core.owl, kgr:ro.json, kgr:ro.kg-bioportal, kgr:ro.obo, kgr:ro.owl, kgr:ro.ro-base.owl, kgr:ro.subsets.ro-interaction.owl, kgr:ro.subsets.ro-neuro.owl, kgr:sri-reference-kg.graph ; schema1:identifier "ro" ; schema1:name "Relation Ontology" ; doap:repository ; skos:inScheme "biological systems", "general" ; adms:status "Active" ; foaf:homepage . kgr:robokop a schema1:KnowledgeGraph ; rdfs:label "ROBOKOP" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ROBOKOP (Reasoning Over Biomedical Objects linked in Knowledge Oriented Pathways) is an open-source biomedical knowledge graph system that enables complex queries over a large-scale integrated knowledge graph." ; dcterms:identifier "robokop" ; dcterms:license ; dcterms:modified "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:automat.robokopkg, kgr:automat.robokopplus, kgr:robokop.graph ; schema1:identifier "robokop" ; schema1:name "ROBOKOP" ; doap:repository ; skos:inScheme "biomedical" ; adms:status "Active" ; foaf:homepage . kgr:ror a schema1:DataSource ; rdfs:label "Research Organization Registry" ; dcterms:created "2026-02-26T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Research Organization Registry is a global, community-led registry of open persistent identifiers and metadata for research and funding organizations." ; dcterms:identifier "ror" ; dcterms:license ; dcterms:modified "2026-05-30T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:obo-db-ingest.ror.json, kgr:obo-db-ingest.ror.obo, kgr:obo-db-ingest.ror.owl, kgr:obo-db-ingest.ror.sssom.tsv, kgr:obo-db-ingest.ror.tsv, kgr:ror.api, kgr:ror.data-dump ; schema1:name "Research Organization Registry" ; skos:inScheme "general", "research funding" ; adms:status "Active" ; foaf:homepage . kgr:rs a schema1:Ontology ; rdfs:label "Rat Strain Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Ontology of rat strains" ; dcterms:identifier "rs" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:rs.kg-bioportal, kgr:rs.obo, kgr:rs.owl ; schema1:name "Rat Strain Ontology" ; doap:repository ; skos:inScheme "organisms" ; adms:status "Active" ; foaf:homepage . kgr:rtx-kg2 a schema1:KnowledgeGraph ; rdfs:label "RTX-KG2" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "RTX-KG2 is a comprehensive biomedical knowledge graph that integrates information from over 80 structured knowledge sources into a semantically standardized model, supporting translational biomedicine and the ARAX biomedical reasoning system." ; dcterms:identifier "rtx-kg2" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cqs.code, kgr:rtx-kg2.code, kgr:rtx-kg2.graph.edges, kgr:rtx-kg2.graph.nodes, kgr:rtx-kg2.neo4j ; schema1:identifier "rtx-kg2" ; schema1:name "RTX-KG2" ; doap:repository ; skos:inScheme "biomedical", "genomics", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:rubygems a schema1:DataSource ; rdfs:label "RubyGems.org" ; dcterms:created "2026-07-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "RubyGems.org is the community package registry for the Ruby ecosystem, hosting metadata and distributable artifacts (gems) for Ruby libraries." ; dcterms:identifier "rubygems" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:rubygems.website, kgr:securechainkg.graph ; schema1:name "RubyGems.org" ; skos:inScheme "information technology", "software" ; adms:status "Active" ; foaf:homepage . kgr:rural-urban-continuum-codes a schema1:DataSource ; rdfs:label "Rural-Urban Continuum Codes" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Rural-Urban Continuum Codes (RUCC) are a classification scheme from the USDA Economic Research Service that distinguishes US counties by their metropolitan or nonmetropolitan status and degree of urbanization. Metro counties are classified by the population size of their metro area, and nonmetro counties are classified by degree of urbanization and adjacency to a metro area. The codes provide a county-level measure of rurality widely used for socioeconomic and geographic analysis. RUCC serves as an upstream source for the Cancer Registry KG, supporting socioeconomic and geographic linkage." ; dcterms:identifier "rural-urban-continuum-codes" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cancer-registry-kg.cdi, kgr:rural-urban-continuum-codes.ers-page, kgr:ruralkg.graph ; schema1:name "Rural-Urban Continuum Codes" ; skos:inScheme "agriculture", "public health", "social determinants of health" ; adms:status "Active" ; foaf:homepage . kgr:ruralkg a schema1:KnowledgeGraph ; rdfs:label "Rural Resilience KG" ; dcterms:created "2025-12-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Rural Resilience KG is a cross-domain knowledge graph to integrate health and justice for rural resilience." ; dcterms:identifier "ruralkg" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ruralkg.graph, kgr:ruralkg.sparql, kgr:ruralkg.tpf ; schema1:name "Rural Resilience KG" ; skos:inScheme "biomedical", "criminal justice", "public health", "social determinants of health" ; adms:status "Active" ; foaf:homepage . kgr:rxno a schema1:Ontology ; rdfs:label "Name Reaction Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Connects organic name reactions to their roles in an organic synthesis and to processes in MOP" ; dcterms:identifier "rxno" ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:rxno.kg-bioportal, kgr:rxno.owl ; schema1:name "Name Reaction Ontology" ; doap:repository ; skos:inScheme "chemistry and biochemistry" ; adms:status "Active" ; foaf:homepage . kgr:rxnorm a schema1:DataSource ; rdfs:label "RxNorm" ; dcterms:created "2025-11-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "RxNorm is the National Library of Medicine's standardized nomenclature for clinical drugs, providing normalized names and unique concept identifiers (RxCUIs) for medications. Developed to support interoperability between healthcare systems, RxNorm links its standardized drug names to the vocabularies commonly used in pharmacy management and drug interaction software, including First Databank, Micromedex, Multum, and Gold Standard Drug Database. By providing links between these diverse vocabularies, RxNorm enables seamless communication between systems that do not use the same software or terminology. RxNorm organizes drug information into a hierarchy of term types representing different levels of specificity, from ingredients through clinical drug components to specific branded and generic products. The nomenclature covers prescription drugs, over-the-counter medications, and now includes the United States Pharmacopeia Compendial Nomenclature containing all Active Pharmaceutical Ingredients. RxNorm is updated monthly with new drug products, revisions to existing entries, and retirement of obsolete terms to maintain currency with the evolving pharmaceutical landscape. The system supports multiple use cases including electronic health records, e-prescribing, pharmacy management systems, drug interaction checking, clinical decision support, and public health surveillance." ; dcterms:identifier "rxnorm" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:aeolus.standardized_data, kgr:athena.vocabularies, kgr:babel.compendia, kgr:dailymed.spl_files, kgr:imo-knowledge-graph.data, kgr:labeledin.indications, kgr:med-rt.core_dts, kgr:med-rt.core_spl, kgr:med-rt.core_xml, kgr:medi.drug_list_flexible, kgr:medi.drug_list_stringent, kgr:molepro.api, kgr:molepro.catalog, kgr:molepro.graph.edges, kgr:molepro.graph.nodes, kgr:molepro.trapi, kgr:ndfrt.rxnorm, kgr:rxnorm.api, kgr:rxnorm.data_files, kgr:rxnorm.rxclass, kgr:rxnorm.rxmix, kgr:rxnorm.rxnav, kgr:rxnorm.rxnav_in_a_box ; schema1:identifier "rxnorm" ; schema1:name "RxNorm" ; skos:inScheme "biomedical", "clinical", "clinical coding", "pharmacology" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ncbi . kgr:sao a schema1:Ontology ; rdfs:label "Subcellular anatomy ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Description unavailable." ; dcterms:identifier "sao" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:sao.kg-bioportal, kgr:sao.owl ; schema1:name "Subcellular anatomy ontology" ; skos:inScheme "anatomy and development", "biological systems", "cell biology" ; adms:status "Inactive" ; foaf:homepage . kgr:sawgraph a schema1:KnowledgeGraph ; rdfs:label "SAWGraph PFAS KG" ; dcterms:created "2025-12-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Safe Agricultural Products and Water Graph (SAWGraph) PFAS KG stores data on PFAS observations and releases, describing the samples, the geospatial features they were taken from, the sampled environmental media, the specific chemical substances and the measurement values observed." ; dcterms:identifier "sawgraph" ; dcterms:license "US federal government public domain" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:fiokg.graph, kgr:hydrologykg.graph, kgr:sawgraph.graph, kgr:sawgraph.sparql, kgr:sawgraph.tpf, kgr:spatialkg.graph ; schema1:name "SAWGraph PFAS KG" ; doap:repository ; skos:inScheme "agriculture", "chemistry and biochemistry", "environment", "environmental exposure", "water resources" ; adms:status "Active" ; foaf:homepage . kgr:sbo a schema1:Ontology ; rdfs:label "Systems Biology Ontology" ; dcterms:created "2025-06-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Terms commonly used in Systems Biology, and in particular in computational modeling." ; dcterms:identifier "sbo" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:sbo.kg-bioportal, kgr:sbo.owl, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:name "Systems Biology Ontology" ; doap:repository ; skos:inScheme "chemistry and biochemistry", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:scales a schema1:KnowledgeGraph ; rdfs:label "SCALES" ; dcterms:created "2025-12-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "SCALES is an integrated justice platform to connect criminal justice data across data silos." ; dcterms:identifier "scales" ; dcterms:license "U.S. Government Work (public domain records; PACER access subject to per-page usage fees)" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:scales.graph, kgr:scales.sparql, kgr:scales.tpf ; schema1:name "SCALES" ; skos:inScheme "criminal justice", "public health" ; adms:status "Active" ; foaf:homepage . kgr:scdo a schema1:Ontology ; rdfs:label "Sickle Cell Disease Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology for the standardization of terminology and integration of knowledge about Sickle Cell Disease." ; dcterms:identifier "scdo" ; dcterms:isReferencedBy , , ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:scdo.kg-bioportal, kgr:scdo.obo, kgr:scdo.owl ; schema1:name "Sickle Cell Disease Ontology" ; doap:repository ; skos:inScheme "biomedical" ; adms:status "Active" ; foaf:homepage . kgr:scibite a schema1:Resource ; rdfs:label "SciBite" ; dcterms:created "2025-03-10T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Data produced by SciBite" ; dcterms:identifier "scibite" ; dcterms:modified "2026-06-27T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:scibite.hgnc ; schema1:identifier "scibite" ; schema1:name "SciBite" ; skos:inScheme "biological systems" ; adms:status "Active" ; foaf:homepage . kgr:sckan a schema1:DataSource ; rdfs:label "SCKAN" ; dcterms:created "2025-09-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "SCKAN (SPARC Connectivity Knowledge base of the Autonomic Nervous system) is a curated knowledge base representing neural circuit connectivity in the autonomic nervous system, derived from SPARC data, anatomical expert interviews, and scientific literature. It supports reasoning and querying of central and peripheral nervous system-end organ circuitry, including detailed ApiNATOMY models for organs such as bladder, heart, colon, stomach, spleen, pancreas, and airways." ; dcterms:identifier "sckan" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:sckan.apinatomy, kgr:sckan.data_release, kgr:sckan.docs, kgr:sckan.query_interface, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:name "SCKAN" ; skos:inScheme "anatomy and development", "neuroscience" ; adms:status "Active" ; foaf:homepage . kgr:scop a schema1:DataSource ; rdfs:label "SCOP" ; dcterms:created "2026-06-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "SCOP (Structural Classification of Proteins) is a classification of protein domains based on their structural and evolutionary relationships. It organizes domains of known three-dimensional structure into a hierarchy that reflects both structural similarity and evolutionary origin." ; dcterms:identifier "scop" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:genecards.web.interface, kgr:scop.site ; schema1:name "SCOP" ; skos:inScheme "protein structure", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:securechainkg a schema1:KnowledgeGraph ; rdfs:label "SecureChain KG" ; dcterms:created "2025-12-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "SecureChain is a knowledge graph for resilient, trustworthy, and secure software supply chains." ; dcterms:identifier "securechainkg" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:securechainkg.graph, kgr:securechainkg.sparql, kgr:securechainkg.tpf ; schema1:name "SecureChain KG" ; doap:repository ; skos:inScheme "information technology", "software" ; adms:status "Active" ; foaf:homepage . kgr:semantic-scholar a schema1:DataSource ; rdfs:label "Semantic Scholar" ; dcterms:created "2026-07-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Semantic Scholar is a free, AI-powered research tool and scholarly literature database from the Allen Institute for AI, providing a corpus of paper metadata, abstracts, authors, citations, and the Semantic Scholar Academic Graph (S2AG)." ; dcterms:identifier "semantic-scholar" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cm4ai_talent_kg.graph, kgr:semantic-scholar.api, kgr:semantic-scholar.website ; schema1:name "Semantic Scholar" ; skos:inScheme "information technology", "literature", "scholarly communication" ; adms:status "Active" ; foaf:homepage . kgr:semapv a schema1:Ontology ; rdfs:label "Semantic Mapping Vocabulary" ; dcterms:created "2025-12-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Semantic Mapping Vocabulary (SEMAPV) is a vocabulary for describing the processes, entities, and agents involved in the curation of semantic mappings between ontologies and terminologies. SEMAPV is developed in conjunction with the Simple Standard for Sharing Ontology Mappings (SSSOM), providing detailed vocabulary to describe different kinds of matching processes (lexical, logical, etc.) as well as pre- and post-processing techniques employed in mapping workflows." ; dcterms:identifier "semapv" ; dcterms:license ; dcterms:modified "2026-04-16T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:efo.obo, kgr:efo.owl ; schema1:name "Semantic Mapping Vocabulary" ; doap:repository ; skos:altLabel "SEMAPV" ; skos:inScheme "general" ; adms:status "Active" ; foaf:homepage . kgr:semmeddb a schema1:DataSource ; rdfs:label "Semantic MEDLINE Database (SemMedDB)" ; dcterms:created "2025-05-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "SemMedDB is a repository of semantic predications (subject-predicate-object triples) extracted from biomedical literature by SemRep, a natural language processing system. It contains over 130 million semantic predications extracted from more than 37 million PubMed citations, supporting biomedical knowledge discovery, literature-based discovery, and clinical applications." ; dcterms:identifier "semmeddb" ; dcterms:isReferencedBy , , , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:epigraphdb.graph, kgr:micromap.api, kgr:rtx-kg2.graph.edges, kgr:rtx-kg2.graph.nodes, kgr:rtx-kg2.neo4j, kgr:semmeddb.semrep.tool, kgr:service-kp.trapi, kgr:translator.semmeddb.graph, kgr:translator.translator_kg.graph ; schema1:identifier "semmeddb" ; schema1:name "Semantic MEDLINE Database (SemMedDB)" ; skos:inScheme "biomedical", "clinical", "drug discovery", "genomics", "literature", "natural language processing", "pharmacology" ; adms:status "Inactive" ; foaf:homepage ; foaf:maker kgr:ncbi . kgr:semopenalex a schema1:KnowledgeGraph ; rdfs:label "SemOpenAlex" ; dcterms:created "2025-12-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Comprehensive information on scientific publications and related entities." ; dcterms:identifier "semopenalex" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:semopenalex.graph, kgr:semopenalex.sparql, kgr:semopenalex.tpf ; schema1:name "SemOpenAlex" ; skos:inScheme "literature", "scholarly communication" ; adms:status "Active" ; foaf:homepage . kgr:semrep a schema1:DataSource ; rdfs:label "SemRep" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "SemRep is a natural language processing program developed at the U.S. National Library of Medicine that extracts semantic predications (subject-relation-object triples) from biomedical text. It uses MetaMap to map free text onto Unified Medical Language System (UMLS) Metathesaurus concepts and the UMLS Semantic Network to assign relations, producing normalized assertions such as \"Drug TREATS Disease\". The semantic predications generated by SemRep over the PubMed corpus form the basis of SemMedDB, a PubMed-scale repository of biomedical predications widely reused for literature-based discovery and knowledge graph construction." ; dcterms:identifier "semrep" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:np-kg.graph.networkx, kgr:np-kg.graph.tsv, kgr:semrep.homepage ; schema1:name "SemRep" ; skos:inScheme "biomedical", "information technology", "literature", "natural language processing" ; adms:status "Active" ; foaf:homepage . kgr:sennet a schema1:DataSource ; rdfs:label "SenNet" ; dcterms:created "2025-11-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Cellular Senescence Network (SenNet) is an NIH Common Fund program that aims to comprehensively identify and characterize senescent cells across the human lifespan and in various disease states. SenNet provides spatial molecular maps of senescent cells in tissues, developing and applying cutting-edge technologies for detecting cellular senescence. The consortium generates multi-omics data, imaging data, and develops computational tools to advance understanding of how senescent cells contribute to aging and age-related diseases." ; dcterms:identifier "sennet" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:digcfdekg.graph, kgr:sennet.api, kgr:sennet.data, kgr:sennet.portal, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:name "SenNet" ; skos:altLabel "Cellular Senescence Network", "SenNet" ; skos:inScheme "aging", "anatomy and development", "biological systems", "biomedical", "genomics", "precision medicine", "single-cell analysis" ; adms:status "Active" ; foaf:homepage . kgr:sep a schema1:Ontology ; rdfs:label "Sample processing and separation techniques" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A structured controlled vocabulary for the annotation of sample processing and separation techniques in scientific experiments." ; dcterms:identifier "sep" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:sep.owl ; schema1:name "Sample processing and separation techniques" ; skos:inScheme "biomedical", "chemistry and biochemistry", "general" ; adms:status "Inactive" ; foaf:homepage . kgr:sepio a schema1:Ontology ; rdfs:label "Scientific Evidence and Provenance Information Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology for representing the provenance of scientific claims and the evidence that supports them." ; dcterms:identifier "sepio" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:sepio.kg-bioportal, kgr:sepio.owl ; schema1:name "Scientific Evidence and Provenance Information Ontology" ; doap:repository ; skos:inScheme "biomedical", "general" ; adms:status "Active" ; foaf:homepage . kgr:service-kp a schema1:KnowledgeGraph ; rdfs:label "Service KP" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The NCATS Translator Service Provider KP, run by the Su and Wu labs at Scripps Research, builds and hosts BioThings-based knowledge provider APIs such as MyGene.info, MyChem.info, MyDisease.info and MyVariant.info, plus about 30 other wrapped data sources. They are exposed together as one TRAPI service through the BioThings Explorer Service Provider team endpoint." ; dcterms:identifier "service-kp" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biothings-explorer.trapi, kgr:cqs.code, kgr:service-kp.code, kgr:service-kp.docs, kgr:service-kp.portal, kgr:service-kp.trapi ; schema1:identifier "service-provider-trapi" ; schema1:name "Service KP" ; doap:repository ; skos:inScheme "biomedical" ; adms:status "Active" ; foaf:homepage . kgr:sfld a schema1:DataSource ; rdfs:label "Structure-Function Linkage Database" ; dcterms:created "2026-06-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Structure-Function Linkage Database (SFLD) is a resource that links enzyme sequence, structure, and chemical function. It organizes functionally diverse enzyme superfamilies by mapping the specific chemical reactions catalyzed by members to the conserved structural features that enable those reactions." ; dcterms:identifier "sfld" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:genecards.web.interface, kgr:sfld.site ; schema1:name "Structure-Function Linkage Database" ; skos:inScheme "chemistry and biochemistry", "enzymes", "protein domains", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:sgd a schema1:DataSource ; rdfs:label "Saccharomyces Genome Database" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Saccharomyces Genome Database (SGD) project collects information and maintains a database of the molecular biology of the yeast Saccharomyces cerevisiae." ; dcterms:identifier "sgd" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:babel.compendia, kgr:genecards.model.organisms, kgr:genecards.web.interface, kgr:kg-alzheimers.graph, kgr:neo.model, kgr:neo.obo, kgr:obo-db-ingest.sgd.json, kgr:obo-db-ingest.sgd.obo, kgr:obo-db-ingest.sgd.owl, kgr:obo-db-ingest.sgd.tsv, kgr:phosphogrid.portal, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db, kgr:sri-reference-kg.graph, kgr:string.cog.links, kgr:string.cog.links.detailed, kgr:string.database, kgr:string.protein.links, kgr:string.protein.links.detailed, kgr:string.protein.links.full, kgr:string.protein.physical.links, kgr:string.protein.physical.links.detailed, kgr:string.protein.physical.links.full ; schema1:identifier "sgd" ; schema1:name "Saccharomyces Genome Database" ; doap:repository ; skos:inScheme "genomics", "model organisms", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:shepherd a schema1:Aggregator ; rdfs:label "BioPack Shepherd" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Shepherd is a shared platform for NCATS Biomedical Data Translator Autonomous Relay Agents (ARAs), developed by the BioPack team. It runs the reasoning workflows of several ARAs (ARAGORN, ARAX, BioThings Explorer and SIPR) as operations on common infrastructure built from a message broker, a shared response store and per-operation workers, and it gets knowledge from Knowledge Providers through Retriever. Each hosted ARA has its own TRAPI endpoint and infores identifier." ; dcterms:identifier "shepherd" ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:shepherd.api, kgr:shepherd.aragorn.api, kgr:shepherd.arax.api, kgr:shepherd.bte.api, kgr:shepherd.code, kgr:shepherd.docs, kgr:shepherd.sipr.api ; schema1:name "BioPack Shepherd" ; doap:repository ; skos:altLabel "Shepherd", "Translator Shepherd Service" ; skos:inScheme "biomedical", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:sibils a schema1:DataSource ; rdfs:label "SIBiLS" ; dcterms:created "2025-05-07T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "SIBiLS (Swiss Institute of Bioinformatics Literature Services) provides personalized information retrieval in biological literature, with customizable search in semantically enriched contents based on keywords and mapped biomedical entities from standardized vocabularies." ; dcterms:identifier "sibils" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:sibils.api.rest.fetch, kgr:sibils.api.rest.qa, kgr:sibils.api.rest.search, kgr:sibils.api.sparql, kgr:sibils.site ; schema1:name "SIBiLS" ; doap:repository ; skos:inScheme "biomedical", "literature" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:sib . kgr:sibo a schema1:Ontology ; rdfs:label "Social Insect Behavior Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Social Behavior in insects" ; dcterms:identifier "sibo" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:sibo.kg-bioportal, kgr:sibo.obo, kgr:sibo.owl ; schema1:name "Social Insect Behavior Ontology" ; doap:repository ; skos:inScheme "biological systems", "insects", "organisms" ; adms:status "Orphaned" ; foaf:homepage . kgr:sic a schema1:DataSource ; rdfs:label "Standard Industrial Classification (SIC)" ; dcterms:created "2026-07-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Standard Industrial Classification (SIC) is a legacy United States government system for classifying industries by a four-digit code, established in 1937 and largely superseded by NAICS. SIC codes remain in use across many federal datasets. SAWGraph uses SIC codes, alongside NAICS, to classify the industry of facilities in its Facilities and Industries Ontology (FIO) knowledge graph, where facility records drawn from EPA's Facility Registry Service carry SIC classifications." ; dcterms:identifier "sic" ; dcterms:license "US federal government public domain" ; dcterms:modified "2026-07-03T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:fiokg.graph, kgr:sic.manual ; schema1:name "Standard Industrial Classification (SIC)" ; skos:inScheme "general" ; adms:status "Active" ; foaf:homepage . kgr:sider a schema1:DataSource ; rdfs:label "SIDER" ; dcterms:created "2025-05-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "SIDER (Side Effect Resource) contains information on marketed medicines and their recorded adverse drug reactions. The information is extracted from public documents and package inserts, including side effect frequency, drug and side effect classifications, and links to further information." ; dcterms:identifier "sider" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:alzkb.browser, kgr:alzkb.data, kgr:bioteque.embeddings, kgr:cancer-genome-interpreter.clinicalkg.graph, kgr:clinicalkg.graph, kgr:hetionet.data.edges, kgr:hetionet.data.json, kgr:hetionet.data.neo4j, kgr:hetionet.data.nodes, kgr:hetionet.hetnetpy, kgr:hetionet.neo4j, kgr:hetionet.search, kgr:ibkh.graph, kgr:indra.cogex.code, kgr:molepro.api, kgr:molepro.catalog, kgr:molepro.graph.edges, kgr:molepro.graph.nodes, kgr:molepro.trapi, kgr:mychem.api, kgr:oregano.graph, kgr:pharmdb.graph, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:pharmkg.graph, kgr:primekg.graph, kgr:sider.drug_atc, kgr:sider.drug_names, kgr:sider.meddra, kgr:sider.meddra_all_indications, kgr:sider.meddra_all_label_indications, kgr:sider.meddra_all_label_se, kgr:sider.meddra_all_se, kgr:sider.meddra_freq, kgr:sider.web, kgr:spoke-okn.graph, kgr:spoke.graph, kgr:translator.sider.graph, kgr:translator.translator_kg.graph, kgr:unibiomap.auxs, kgr:unibiomap.links, kgr:unibiomap.pred, kgr:unibiomap.pred.full ; schema1:identifier "sider" ; schema1:name "SIDER" ; skos:inScheme "biomedical", "drug discovery", "pharmacology", "pharmacovigilance" ; adms:status "Inactive" ; foaf:homepage . kgr:sifr-bioportal a schema1:Aggregator ; rdfs:label "SIFR BioPortal" ; dcterms:created "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "SIFR BioPortal is an open repository of French biomedical ontologies and terminologies run by LIRMM in Montpellier. It is built on the OntoPortal technology (the software behind NCBO BioPortal) and hosts French-language and French-translated vocabularies such as the French versions of MeSH, ATC, MedDRA, SNOMED and ICD-10 (CIM-10), CCAM, ORDO and other national terminologies, with search, browsing, mappings, a REST API, a SPARQL endpoint, and the SIFR Annotator for semantic annotation of French biomedical text and clinical notes. As of October 2026 it listed 41 ontologies with about 889,000 classes. It was developed within the French ANR SIFR project and the EU H2020-MSCA SIFRm project." ; dcterms:identifier "sifr-bioportal" ; dcterms:isReferencedBy ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:sifr-bioportal.annotator, kgr:sifr-bioportal.api, kgr:sifr-bioportal.api.docs, kgr:sifr-bioportal.portal, kgr:sifr-bioportal.sparql ; schema1:name "SIFR BioPortal" ; doap:repository ; skos:inScheme "biomedical", "clinical", "clinical coding", "information technology", "literature", "metadata", "natural language processing" ; adms:status "Active" ; foaf:homepage . kgr:signor a schema1:DataSource ; rdfs:label "SIGNOR" ; dcterms:created "2025-08-12T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "SIGNOR (SIGnaling Network Open Resource) is a manually curated repository of experimentally supported, causal relationships between human proteins and other biologically relevant entities (chemicals, phenotypes, complexes, families, stimuli). Each interaction is annotated with effect, mechanism, directionality, evidence (PMID), and a relevance score, enabling construction and analysis of signed, directed signaling networks and pathways. Cite SIGNOR (Lo Surdo et al., 2022 NAR) when using data; interaction data are directional and signed—verify effect/mechanism fields when integrating." ; dcterms:identifier "signor" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:cancer-genome-interpreter.clinicalkg.graph, kgr:clinicalkg.graph, kgr:genecards.web.interface, kgr:iptmnet.ptm, kgr:obo-db-ingest.signor.json, kgr:obo-db-ingest.signor.obo, kgr:obo-db-ingest.signor.owl, kgr:obo-db-ingest.signor.tsv, kgr:signor.api, kgr:signor.complete, kgr:signor.interactions.dynamic, kgr:signor.pathways, kgr:signor.web, kgr:translator.signor.graph, kgr:translator.translator_kg.graph ; schema1:identifier "signor" ; schema1:name "SIGNOR" ; skos:inScheme "biomedical", "pathways", "proteomics", "signal transduction", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:silva a schema1:DataSource ; rdfs:label "SILVA" ; dcterms:created "2025-09-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "SILVA is a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data. It provides regularly updated datasets of aligned small (16S/18S, SSU) and large subunit (23S/28S, LSU) ribosomal RNA sequences for all three domains of life (Bacteria, Archaea and Eukarya). SILVA is a Global Core Biodata Resource and ELIXIR Core Data Resource, currently maintaining over 9.4 million SSU sequences in release 138.2." ; dcterms:identifier "silva" ; dcterms:isReferencedBy , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , ; schema1:hasPart kgr:genecards.web.interface, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db, kgr:silva.aligner, kgr:silva.arb_files, kgr:silva.browser, kgr:silva.ngs_pipeline, kgr:silva.release_files, kgr:silva.search, kgr:silva.testprime, kgr:silva.testprobe ; schema1:name "SILVA" ; doap:repository ; skos:inScheme "genomics", "microbiology", "non-coding RNA", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:simap a schema1:DataSource ; rdfs:label "SIMAP" ; dcterms:created "2026-02-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "SIMAP (Similarity Matrix of Proteins) was a comprehensive database of pre-calculated all-against-all protein sequence similarities, protein domains, functional annotations, and clusters. Developed at MIPS (Munich Information Center for Protein Sequences) / GSF / Helmholtz Munich and later maintained at the Technical University of Munich (TUM), it provided a continuously updated similarity matrix covering tens of millions of non-redundant protein sequences from UniProt and other sources, and was used as an upstream resource by integrative protein interaction and annotation systems. The project appears discontinued, as its historical hosts (MIPS/Helmholtz Munich and the TUM webclu server) no longer resolve and no successor host is currently reachable." ; dcterms:identifier "simap" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:genecards.web.interface, kgr:simap.portal, kgr:string.cog.links, kgr:string.cog.links.detailed, kgr:string.database, kgr:string.protein.links, kgr:string.protein.links.detailed, kgr:string.protein.links.full, kgr:string.protein.physical.links, kgr:string.protein.physical.links.detailed, kgr:string.protein.physical.links.full ; schema1:name "SIMAP" ; skos:inScheme "genomics", "protein domains", "proteomics" ; adms:status "Inactive" ; foaf:homepage . kgr:sio a schema1:Ontology ; rdfs:label "Semanticscience Integrated Ontology" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Semanticscience Integrated Ontology (SIO) is an ontology of basic types and relations for representing physical, processual, and informational entities and supporting biomedical knowledge representation and discovery." ; dcterms:identifier "sio" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:jpost.ontology, kgr:metabokg.graph, kgr:metabokg.schema, kgr:sio.bioportal, kgr:sio.kg-bioportal, kgr:sio.owl ; schema1:name "Semanticscience Integrated Ontology" ; doap:repository ; skos:altLabel "SIO" ; skos:inScheme "biological systems", "biomedical", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:skm a schema1:KnowledgeGraph ; rdfs:label "Stress Knowledge Map" ; dcterms:created "2025-06-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A comprehensive knowledge graph resource for systems biology analysis of plant stress responses, containing mechanistic models and knowledge networks for plant stress signaling. It includes two knowledge graphs, the mechanistic Plant Stress Signalling model (PSS) and the Comprehensive Knowledge Network (CKN)." ; dcterms:hasVersion "1.0" ; dcterms:identifier "skm" ; dcterms:isReferencedBy ; dcterms:language "en" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:skm.ckn.explorer, kgr:skm.ckn.v1.annotations, kgr:skm.ckn.v1.graph, kgr:skm.ckn.v2.annotations, kgr:skm.ckn.v2.graph, kgr:skm.pss.explorer, kgr:skm.pss.live.boolnet.annotations, kgr:skm.pss.live.boolnet.graph, kgr:skm.pss.live.dot, kgr:skm.pss.live.sbgn, kgr:skm.pss.live.sbml, kgr:skm.pss.live.sif.dinar.graph, kgr:skm.pss.live.sif.original.annotations, kgr:skm.pss.live.sif.original.graph, kgr:skm.pss.live.sif.projection.annotations, kgr:skm.pss.live.sif.projection.graph ; schema1:name "Stress Knowledge Map" ; doap:repository ; skos:inScheme "agriculture", "organisms", "pathways", "plants", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:skos a schema1:DataModel ; rdfs:label "SKOS" ; dcterms:created "2025-06-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "SKOS (Simple Knowledge Organization System) is a W3C recommendation designed for representation of thesauri, classification schemes, taxonomies, subject-heading systems, or any other type of structured controlled vocabulary." ; dcterms:hasVersion "SKOS Reference (August 18, 2009)" ; dcterms:identifier "skos" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:chr.model.owl, kgr:clo.owl, kgr:edam.csv, kgr:edam.owl, kgr:edam.tsv, kgr:efo.obo, kgr:efo.owl, kgr:forum.graph.dump, kgr:openbiodiv.ontology.ttl, kgr:skos.core, kgr:skos.rdf, kgr:skos.reference ; schema1:name "SKOS" ; doap:repository ; skos:inScheme "general", "information technology", "metadata" ; adms:status "Active" ; foaf:homepage . kgr:sldb a schema1:KnowledgeGraph ; rdfs:label "sldb" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A graph of synthetic lethal interactions." ; dcterms:identifier "sldb" ; dcterms:modified "2026-07-01T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:sldb.code, kgr:sldb.data, kgr:sldb.docs, kgr:sldb.releases ; schema1:name "sldb" ; doap:repository ; skos:inScheme "biomedical", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:slso a schema1:Ontology ; rdfs:label "Space Life Sciences Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Space Life Sciences Ontology is an application ontology and is intended to support the operation of NASA's Life Sciences Data Archive and other systems that contain space life science research data." ; dcterms:identifier "slso" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:slso.kg-bioportal, kgr:slso.obo, kgr:slso.owl ; schema1:name "Space Life Sciences Ontology" ; doap:repository ; skos:inScheme "biomedical", "general" ; adms:status "Active" ; foaf:homepage . kgr:smart a schema1:DataSource ; rdfs:label "SMART" ; dcterms:created "2026-01-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A protein domain annotation and architecture analysis resource covering curated domain models and annotated proteomes." ; dcterms:identifier "smart" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:genecards.web.interface, kgr:phosphoelm.phosphoblast, kgr:smart.list-genomes, kgr:smart.portal, kgr:smart.search, kgr:string.cog.links, kgr:string.cog.links.detailed, kgr:string.database, kgr:string.protein.links, kgr:string.protein.links.detailed, kgr:string.protein.links.full, kgr:string.protein.physical.links, kgr:string.protein.physical.links.detailed, kgr:string.protein.physical.links.full ; schema1:name "SMART" ; skos:altLabel "SMART", "Simple Modular Architecture Research Tool" ; skos:inScheme "genomics", "protein domains", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:smartapi a schema1:Aggregator ; rdfs:label "SmartAPI" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "SmartAPI is a registry of OpenAPI descriptions for biomedical web APIs, extended with semantic annotations of inputs and outputs. It hosts the x-translator and x-bte extensions used by the NCATS Biomedical Data Translator, and builds a Translator meta knowledge graph of the subject-predicate-object relations that registered APIs can answer, which BioThings Explorer uses to plan federated queries. It is developed by the Su and Wu labs at Scripps Research." ; dcterms:identifier "smartapi" ; dcterms:isReferencedBy ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biothings-explorer.trapi, kgr:connections-hypothesis-kp.graph, kgr:connections-hypothesis-kp.smartapi, kgr:ctkp.smartapi, kgr:service-kp.portal, kgr:smartapi.api, kgr:smartapi.api-docs, kgr:smartapi.code, kgr:smartapi.docs, kgr:smartapi.metadata-repository, kgr:smartapi.metakg, kgr:smartapi.portal, kgr:smartapi.translator-portal, kgr:ubkg.api ; schema1:identifier "smart-api" ; schema1:name "SmartAPI" ; doap:repository ; skos:altLabel "SmartAPI registry", "smartAPI" ; skos:inScheme "biomedical", "information technology", "metadata" ; adms:status "Active" ; foaf:homepage . kgr:smpdb a schema1:DataSource ; rdfs:label "Small Molecule Pathway Database" ; dcterms:created "2025-12-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Small Molecule Pathway Database (SMPDB) is an interactive, visual database containing more than 30,000 small molecule pathways found in humans. SMPDB provides detailed pathway diagrams for metabolic pathways, metabolic disease pathways, metabolite signaling pathways, and drug-action pathways. All pathways include information on relevant organs, subcellular compartments, cofactors, protein locations, metabolite locations, chemical structures, and protein quaternary structures. Each small molecule is hyperlinked to HMDB or DrugBank and each protein is hyperlinked to UniProt." ; dcterms:identifier "smpdb" ; dcterms:isReferencedBy , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:babel.compendia, kgr:cancer-genome-interpreter.clinicalkg.graph, kgr:clinicalkg.graph, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:rtx-kg2.graph.edges, kgr:rtx-kg2.graph.nodes, kgr:rtx-kg2.neo4j, kgr:unibiomap.auxs, kgr:unibiomap.links, kgr:unibiomap.pathway_desc, kgr:unibiomap.pred, kgr:unibiomap.pred.full ; schema1:identifier "smpdb" ; schema1:name "Small Molecule Pathway Database" ; skos:altLabel "SMPDB" ; skos:inScheme "chemistry and biochemistry", "drug discovery", "metabolism", "pathways" ; adms:status "Active" ; foaf:homepage . kgr:sniff a schema1:KnowledgeGraph ; rdfs:label "Sniff" ; dcterms:created "2026-08-12T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An open canine genetics atlas covering breed-stratified variant data, canine disease associations, and dog-to-human gene orthology, published with an evidence-graded, Biolink-conformant knowledge graph." ; dcterms:hasVersion "1.0.1" ; dcterms:identifier "sniff" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , ; schema1:hasPart kgr:sniff.atlas-vcf, kgr:sniff.browser, kgr:sniff.federation-edges, kgr:sniff.federation-manifest, kgr:sniff.federation-nodes, kgr:sniff.mcp ; schema1:name "Sniff" ; doap:repository ; skos:inScheme "biomedical", "domestic animals", "genetic variation", "genomics", "organisms", "phenotype" ; adms:status "Active" ; foaf:homepage . kgr:snodb a schema1:DataSource ; rdfs:label "snoDB" ; dcterms:created "2025-10-27T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "snoDB is a specialized database of human small nucleolar RNAs (snoRNAs), integrating data from established databases with manually curated literature. It provides comprehensive information on snoRNA genomic locations, sequences, conservation, host genes, snoRNA-RNA interactions, snoRNA-protein interactions, and abundance data across tissues and cancer cells." ; dcterms:identifier "snodb" ; dcterms:isReferencedBy , ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:genecards.web.interface, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db, kgr:snodb.about, kgr:snodb.abundance, kgr:snodb.abundance-viewer, kgr:snodb.canonical-interactions, kgr:snodb.conservation, kgr:snodb.copies, kgr:snodb.experiment-details, kgr:snodb.export, kgr:snodb.host-genes, kgr:snodb.motifs, kgr:snodb.noncanonical-interactions, kgr:snodb.portal, kgr:snodb.protein-interactions, kgr:snodb.rrna-modifications, kgr:snodb.rrna-mods, kgr:snodb.sequence-search, kgr:snodb.sequences, kgr:snodb.snorupdate, kgr:snodb.statistics, kgr:snodb.tutorial ; schema1:name "snoDB" ; skos:inScheme "genomics", "non-coding RNA" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:scott-lab-universite-de-sherbrooke . kgr:snomedct a schema1:Ontology ; rdfs:label "SNOMED CT" ; dcterms:created "2025-06-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "SNOMED CT (Systematized Nomenclature of Medicine Clinical Terms) is the most comprehensive, multilingual clinical healthcare terminology in the world. It provides a standardized way to represent clinical phrases captured by clinicians and enables automatic interpretation of these terms. SNOMED CT includes more than 360,000 active concepts with unique meanings and formal logic-based definitions organized into hierarchies." ; dcterms:identifier "snomedct" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:acukg.csv, kgr:acukg.json, kgr:acukg.rdf, kgr:aeolus.standardized_data, kgr:athena.mappings, kgr:athena.vocabularies, kgr:babel.compendia, kgr:cancer-genome-interpreter.clinicalkg.graph, kgr:clinicalkg.graph, kgr:genecards.web.interface, kgr:gtr.test_condition_gene, kgr:imo-knowledge-graph.data, kgr:med-rt.core_dts, kgr:med-rt.core_xml, kgr:medgen.csv, kgr:medgen.id-mappings, kgr:medgen.mgconso, kgr:medgen.mgdef, kgr:medgen.mgrel, kgr:medgen.mgsat, kgr:medgen.names, kgr:medkg.site, kgr:snomedct.browser, kgr:snomedct.icd10cm.map, kgr:snomedct.international.content, kgr:snomedct.nursing, kgr:snomedct.us.content, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:identifier "snomedct" ; schema1:name "SNOMED CT" ; doap:repository ; skos:inScheme "biomedical", "clinical", "clinical coding" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ncbi . kgr:snopy a schema1:DataSource ; rdfs:label "snOPY" ; dcterms:created "2025-09-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "snOPY (snoRNA Orthological Gene Database) provides comprehensive information about small nucleolar RNAs (snoRNAs), their gene loci, and target RNAs across multiple species. The database focuses on orthologous relationships between snoRNAs using target RNA conservation rather than snoRNA sequence similarity." ; dcterms:identifier "snopy" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:genecards.web.interface, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db, kgr:snopy.about, kgr:snopy.blast, kgr:snopy.box-cd-snornas, kgr:snopy.box-haca-snornas, kgr:snopy.intronic-loci, kgr:snopy.monocistronic-loci, kgr:snopy.ortholog-data, kgr:snopy.orthologs, kgr:snopy.polycistronic-loci, kgr:snopy.portal, kgr:snopy.rrna-modifications, kgr:snopy.search, kgr:snopy.snrna-modifications, kgr:snopy.statistics, kgr:snopy.target-rna ; schema1:name "snOPY" ; skos:inScheme "genomics", "non-coding RNA" ; adms:status "Active" ; foaf:homepage . kgr:snornadatabase a schema1:DataSource ; rdfs:label "snoRNABase" ; dcterms:created "2025-09-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "snoRNABase (also known as snoRNA-LBME-db) is a comprehensive database of human C/D box and H/ACA box small nucleolar RNAs (snoRNAs) and small Cajal body-specific RNAs (scaRNAs). The database contains 361 entries including 257 C/D box snoRNAs, 86 H/ACA snoRNAs, and 18 scaRNAs. It provides detailed information on snoRNA sequences, their genomic locations, host genes, target RNAs (rRNAs and spliceosomal RNAs), predicted base-pairing interactions with target nucleotides, and modification sites (2'-O-ribose methylation and pseudouridylation). Each entry includes literature references, GenBank accession numbers, and links to the UCSC Genome Browser. The database features search, browse, and \"Find guide RNA\" functions to identify snoRNAs that guide modifications of specific nucleotides in rRNAs (28S, 18S, 5.8S) and spliceosomal RNAs (U1, U2, U4, U5, U6, U12)." ; dcterms:identifier "snornadatabase" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db, kgr:snornadatabase.blast, kgr:snornadatabase.browse, kgr:snornadatabase.find_guide, kgr:snornadatabase.portal, kgr:snornadatabase.search ; schema1:name "snoRNABase" ; skos:altLabel "snoRNA database", "snoRNA-LBME-db" ; skos:inScheme "genomics", "non-coding RNA" ; adms:status "Active" ; foaf:homepage . kgr:snpeff a schema1:Resource ; rdfs:label "SnpEff" ; dcterms:created "2025-10-31T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "SnpEff is a genetic variant annotation and functional effect prediction toolbox widely used in genomics pipelines. It annotates and predicts the effects of genetic variants on genes and proteins (such as amino acid changes), supports over 38,000 genomes, uses standardized Sequence Ontology terms, and implements the VCF annotation standard ANN field. SnpEff is bundled with SnpSift, a companion tool for filtering and manipulating genomic annotated variants. Both tools are integrated with Galaxy and GATK, making them essential components of sequencing data analysis workflows." ; dcterms:identifier "snpeff" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:myvariant.api, kgr:snpeff.databases, kgr:snpeff.documentation, kgr:snpeff.download, kgr:snpeff.github, kgr:snpeff.snpsift-documentation, kgr:snpeff.sourceforge ; schema1:identifier "snpeff" ; schema1:name "SnpEff" ; doap:repository ; skos:inScheme "biomedical", "genetic variation", "genomics", "precision medicine" ; adms:status "Active" ; foaf:homepage . kgr:so a schema1:Ontology ; rdfs:label "Sequence types and features ontology" ; dcterms:created "2025-06-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A structured controlled vocabulary for sequence annotation, for the exchange of annotation data and for the description of sequence objects in databases." ; dcterms:identifier "so" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:efo.obo, kgr:efo.owl, kgr:gff.specification, kgr:np-kg.graph.networkx, kgr:np-kg.graph.tsv, kgr:pheknowlator.graph, kgr:so.kg-bioportal, kgr:so.obo, kgr:so.owl, kgr:so.subsets.SOFA.obo, kgr:so.subsets.SOFA.owl, kgr:sri-reference-kg.graph ; schema1:identifier "so" ; schema1:name "Sequence types and features ontology" ; doap:repository ; skos:inScheme "chemistry and biochemistry", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:sockg a schema1:KnowledgeGraph ; rdfs:label "SOC-KG" ; dcterms:created "2025-12-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Soil Organic Carbon Knowledge Graph (SOCKG) enhances robust soil carbon modeling, which is crucial for voluntary carbon markets." ; dcterms:identifier "sockg" ; dcterms:license "U.S. Government Work (public domain)" ; dcterms:modified "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:sockg.graph, kgr:sockg.sparql, kgr:sockg.tpf ; schema1:name "SOC-KG" ; skos:inScheme "agriculture", "environment" ; adms:status "Active" ; foaf:homepage . kgr:sopharm a schema1:Ontology ; rdfs:label "Suggested Ontology for Pharmacogenomics" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Description unavailable." ; dcterms:identifier "sopharm" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:sopharm.kg-bioportal, kgr:sopharm.obo, kgr:sopharm.owl ; schema1:name "Suggested Ontology for Pharmacogenomics" ; skos:inScheme "chemistry and biochemistry", "pharmacogenomics", "pharmacology" ; adms:status "Inactive" ; foaf:homepage . kgr:sparc a schema1:DataSource ; rdfs:label "Stimulating Peripheral Activity to Relieve Conditions (SPARC)" ; dcterms:created "2026-07-01T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Stimulating Peripheral Activity to Relieve Conditions (SPARC) is an NIH Common Fund program that accelerates development of therapeutic devices modulating electrical activity in nerves to improve organ function (bioelectronic medicine). The SPARC Portal (sparc.science) is a public resource that shares curated data sets, anatomical and functional maps, and predictive computational models describing the autonomic and peripheral nervous system and its connections to internal organs. Resources can be shared, cited, visualized, computed on, and used for virtual experimentation to advance bioelectronic medicine." ; dcterms:identifier "sparc" ; dcterms:license ; dcterms:modified "2026-07-01T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:digcfdekg.graph, kgr:sparc.data, kgr:sparc.portal ; schema1:name "Stimulating Peripheral Activity to Relieve Conditions (SPARC)" ; skos:altLabel "SPARC", "Stimulating Peripheral Activity to Relieve Conditions" ; skos:inScheme "anatomy and development", "biomedical", "neuroscience" ; adms:status "Active" ; foaf:homepage . kgr:spatialkg a schema1:KnowledgeGraph ; rdfs:label "SAWGraph Spatial KG" ; dcterms:created "2025-12-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The SAWGraph Spatial KG is part of the Safe Agricultural Products and Water Graph (SAWGraph) project. It contains all the Level 13 grid cells from the S2 grid as well as administrative regions of levels 1 to 3 (states, counties, and county subdivisions) and the spatial relationships between them for the 48 contiguous states in the U.S." ; dcterms:identifier "spatialkg" ; dcterms:license "US federal government public domain" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:spatialkg.graph, kgr:spatialkg.sparql, kgr:spatialkg.tpf ; schema1:name "SAWGraph Spatial KG" ; skos:inScheme "environment", "geographic information systems" ; adms:status "Active" ; foaf:homepage . kgr:spd a schema1:Ontology ; rdfs:label "Spider Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (i.g. silk, web, borrow)." ; dcterms:identifier "spd" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:spd.kg-bioportal, kgr:spd.owl ; schema1:name "Spider Ontology" ; doap:repository ; skos:inScheme "anatomy and development" ; adms:status "Active" ; foaf:homepage . kgr:spdx a schema1:DataModel ; rdfs:label "SPDX License List" ; dcterms:created "2026-02-26T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The SPDX License List is a standardized catalog of license and exception identifiers used by the SPDX specification to support consistent software, data, hardware, and documentation licensing metadata." ; dcterms:identifier "spdx" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:obo-db-ingest.spdx.json, kgr:obo-db-ingest.spdx.obo, kgr:obo-db-ingest.spdx.owl, kgr:obo-db-ingest.spdx.tsv, kgr:spdx.license-list-data, kgr:spdx.portal ; schema1:name "SPDX License List" ; skos:altLabel "SPDX", "System Package Data Exchange" ; skos:inScheme "information technology", "software" ; adms:status "Active" ; foaf:homepage . kgr:spoke a schema1:KnowledgeGraph ; rdfs:label "SPOKE" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Scalable Precision Medicine Open Knowledge Engine (SPOKE) is a comprehensive biomedical knowledge graph that connects diverse data from multiple domains to enable discovery and precision medicine applications." ; dcterms:hasVersion "2.0" ; dcterms:identifier "spoke" ; dcterms:isReferencedBy , , ; dcterms:license ; dcterms:modified "2026-05-30T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:spoke-okn.graph, kgr:spoke.docs, kgr:spoke.graph, kgr:spoke.neighborhood_explorer, kgr:spoke.sparql ; schema1:identifier "spoke" ; schema1:name "SPOKE" ; doap:repository ; skos:inScheme "biomedical", "clinical", "drug discovery", "genomics", "pharmacology", "precision medicine" ; adms:status "Active" ; foaf:homepage . kgr:spoke-genelab a schema1:KnowledgeGraph ; rdfs:label "SPOKE GeneLab" ; dcterms:created "2025-12-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The spoke-genelab KG complements the spokeokn (SPOKE Open Knowledge Network) KG and is designed to integrate omics data from NASA’s Open Science Data Repository (OSDR/GeneLab), which hosts results from spaceflight experiments." ; dcterms:identifier "spoke-genelab" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:spoke-genelab.sparql, kgr:spoke-genelab.tpf ; schema1:name "SPOKE GeneLab" ; doap:repository ; skos:inScheme "genomics" ; adms:status "Active" ; foaf:homepage . kgr:spoke-okn a schema1:KnowledgeGraph ; rdfs:label "SPOKE-OKN" ; dcterms:created "2026-03-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The spoke-okn (SPOKE Open Knowledge Network) KG is a comprehensive biomedical and environmental health knowledge graph that integrates diverse data across genomics, environmental science, and public health." ; dcterms:identifier "spoke-okn" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:spoke-genelab.sparql, kgr:spoke-genelab.tpf, kgr:spoke-okn.graph, kgr:spoke-okn.sparql, kgr:spoke-okn.tpf ; schema1:name "SPOKE-OKN" ; doap:repository ; skos:inScheme "biomedical", "clinical", "genomics", "pharmacology", "precision medicine" ; adms:status "Active" ; foaf:homepage . kgr:sra a schema1:DataSource ; rdfs:label "Sequence Read Archive" ; dcterms:created "2026-05-21T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Sequence Read Archive (SRA) is NCBI's public archive of high-throughput sequencing data and part of the International Nucleotide Sequence Database Collaboration, providing searchable access to raw sequence runs, metadata, cloud delivery, and download tooling." ; dcterms:identifier "sra" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:archs4.human.gene_counts, kgr:archs4.human.transcript_counts, kgr:archs4.mouse.gene_counts, kgr:archs4.mouse.transcript_counts, kgr:archs4.zoo, kgr:chip-atlas.colocalization, kgr:chip-atlas.experimentlist, kgr:chip-atlas.peaks.assembled, kgr:chip-atlas.peaks.each, kgr:chip-atlas.peaks.light, kgr:chip-atlas.portal, kgr:chip-atlas.targetgenes, kgr:ddbj.dra, kgr:imodulondb.datasets, kgr:imodulondb.imodulonminer, kgr:imodulondb.modulome_workflow, kgr:nde.graph, kgr:sra.docs, kgr:sra.portal, kgr:sra.run_selector ; schema1:name "Sequence Read Archive" ; skos:altLabel "SRA", "Sequence Read Archive" ; skos:inScheme "genomics", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:sri-reference-kg a schema1:KnowledgeGraph ; rdfs:label "SRI-Reference KG" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Monarch Initiative's SRI reference knowledge graph is a biomedical KG distribution and service layer that supports Translator-style querying across genes, diseases, phenotypes, variants, and related entities." ; dcterms:identifier "sri-reference-kg" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:automat.biolink, kgr:sri-reference-kg.api, kgr:sri-reference-kg.docs, kgr:sri-reference-kg.graph ; schema1:identifier "sri-reference-kg" ; schema1:name "SRI-Reference KG" ; doap:repository ; skos:inScheme "biomedical", "genomics", "phenotype" ; adms:status "Active" ; foaf:homepage . kgr:srpdb a schema1:DataSource ; rdfs:label "SRPDB" ; dcterms:created "2025-09-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "SRPDB (Signal Recognition Particle Database) provides aligned, annotated, and phylogenetically ordered sequences related to the structure and function of signal recognition particles (SRP). The database contains over 1,100 SRP RNA sequences and protein sequences from various organisms, with secondary structure diagrams based on comparative sequence analysis." ; dcterms:identifier "srpdb" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:genecards.web.interface, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db, kgr:srpdb.2d-structures, kgr:srpdb.3d-structures, kgr:srpdb.about, kgr:srpdb.animal-rna, kgr:srpdb.archaeal-rna, kgr:srpdb.bibliography, kgr:srpdb.cam-kinase, kgr:srpdb.comparative-analysis, kgr:srpdb.cpsrp43, kgr:srpdb.flhf, kgr:srpdb.ftsy, kgr:srpdb.fungal-metazoan-rna, kgr:srpdb.links, kgr:srpdb.long-bacterial-rna, kgr:srpdb.models, kgr:srpdb.more-protein-browser, kgr:srpdb.motifs, kgr:srpdb.overview, kgr:srpdb.plant-rna, kgr:srpdb.portal, kgr:srpdb.protozoan-rna, kgr:srpdb.receptor-beta, kgr:srpdb.short-bacterial-rna, kgr:srpdb.srp-protein-browser, kgr:srpdb.srp-rna-browser, kgr:srpdb.srp14, kgr:srpdb.srp19, kgr:srpdb.srp21, kgr:srpdb.srp54, kgr:srpdb.srp68, kgr:srpdb.srp72, kgr:srpdb.srp9, kgr:srpdb.structures ; schema1:name "SRPDB" ; skos:inScheme "genomics", "non-coding RNA" ; adms:status "Active" ; foaf:homepage . kgr:ssurgo a schema1:DataSource ; rdfs:label "Soil Survey Geographic Database (SSURGO)" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Soil Survey Geographic Database (SSURGO) is a detailed digital soil-survey dataset produced by the USDA Natural Resources Conservation Service (NRCS). It provides spatial map units and associated tabular attributes describing the physical and chemical properties of soils across the United States, generally at scales from 1:12,000 to 1:63,360. SSURGO is the most detailed level of the USDA soil-survey series and is widely used in land management, agriculture, and environmental modeling. It serves as an upstream data source for KnowWhereGraph." ; dcterms:identifier "ssurgo" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:knowwheregraph.graph, kgr:sawgraph.graph, kgr:ssurgo.download, kgr:ssurgo.websoilsurvey ; schema1:name "Soil Survey Geographic Database (SSURGO)" ; skos:inScheme "agriculture", "environment" ; adms:status "Active" ; foaf:homepage . kgr:startgeo a schema1:DataSource ; rdfs:label "STAR GEO Search Application" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "STARGEO is a gene expression search application that enables researchers to search and analyze gene expression data from the Gene Expression Omnibus (GEO) repository using statistical methods to identify differentially expressed genes and relevant datasets." ; dcterms:identifier "startgeo" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:startgeo.portal ; schema1:identifier "startgeo" ; schema1:name "STAR GEO Search Application" ; skos:altLabel "STARGEO" ; skos:inScheme "biomedical", "gene expression profiling", "genomics" ; adms:status "Inactive" ; foaf:homepage . kgr:stato a schema1:Ontology ; rdfs:label "The Statistical Methods Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "STATO is a general-purpose STATistics Ontology. Its aim is to provide coverage for processes such as statistical tests, their conditions of application, and information needed or resulting from statistical methods, such as probability distributions, variables, spread and variation metrics. STATO also covers aspects of experimental design and description of plots and graphical representations commonly used to provide visual cues of data distribution or layout and to assist review of the results." ; dcterms:identifier "stato" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:orkg.dump, kgr:stato.kg-bioportal, kgr:stato.owl ; schema1:name "The Statistical Methods Ontology" ; doap:repository ; skos:inScheme "biomedical", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:stellar a schema1:Resource ; rdfs:label "STELLAR" ; dcterms:created "2025-06-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "STELLAR is a geometric deep learning method for cell type discovery and identification in spatially resolved single-cell datasets. It automatically assigns cells to known cell types and discovers novel cell types by transferring annotations across different dissection regions, tissues, and donors." ; dcterms:identifier "stellar" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:stellar.code, kgr:stellar.datasets, kgr:stellar.demo, kgr:ubkg.csv, kgr:ubkg.neo4j ; schema1:name "STELLAR" ; doap:repository ; skos:inScheme "biological systems", "genomics", "information technology", "machine learning", "single-cell analysis" ; adms:status "Active" ; foaf:homepage . kgr:stitch a schema1:DataSource ; rdfs:label "STITCH" ; dcterms:created "2025-11-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "STITCH (Search Tool for Interacting Chemicals) is a database of known and predicted interactions between chemicals and proteins, from the STRING team. Evidence comes from four channels: experiments (ChEMBL, PDSP Ki, PDB and large-scale kinase-ligand screens), curated databases (DrugBank, GLIDA, Matador, TTD, CTD, KEGG, NCI/Nature PID, Reactome and BioCyc), text mining (MEDLINE abstracts, PubMed Central open-access full text, OMIM and NIH RePORTER grant abstracts) and structure-based predictions, with transfer between organisms by orthology. Chemicals are derived from PubChem and proteins from STRING. Version 5.0 (data from 2015, published 2016) covers about 0.5 million chemicals and 9.6 million proteins in 2,031 organisms. STITCH is no longer updated or supported." ; dcterms:identifier "stitch" ; dcterms:isReferencedBy , , , , ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:cancer-genome-interpreter.clinicalkg.graph, kgr:clinicalkg.graph, kgr:date.archive, kgr:molepro.api, kgr:molepro.catalog, kgr:molepro.graph.edges, kgr:molepro.graph.nodes, kgr:molepro.trapi, kgr:stitch.api, kgr:stitch.downloads, kgr:stitch.portal, kgr:unibiomap.auxs, kgr:unibiomap.links, kgr:unibiomap.pred, kgr:unibiomap.pred.full ; schema1:identifier "stitch" ; schema1:name "STITCH" ; skos:inScheme "biomedical", "drug discovery", "systems biology" ; adms:status "Inactive" ; foaf:homepage ; foaf:maker kgr:stringdb . kgr:string a schema1:DataSource ; rdfs:label "STRING" ; dcterms:created "2025-06-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "STRING is a database of known and predicted protein-protein interactions. The interactions include direct (physical) and indirect (functional) associations derived from computational prediction, knowledge transfer between organisms, and interactions aggregated from other primary databases." ; dcterms:hasVersion "12.0" ; dcterms:identifier "string" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:aop-db.data, kgr:automat.robokopkg, kgr:automat.stringdb, kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:bioteque.embeddings, kgr:cancer-genome-interpreter.clinicalkg.graph, kgr:cardiokg.neo4j, kgr:clinicalkg.graph, kgr:drkg.graph, kgr:epigraphdb.graph, kgr:genecards.protein.interactions, kgr:genecards.web.interface, kgr:imodulondb.browser, kgr:imodulondb.datasets, kgr:kg-alzheimers.graph, kgr:kg-covid-19.graph, kgr:kg-idg.graph, kgr:kg-jensenlab-diseases.edges.kgx, kgr:kg-jensenlab-diseases.edges.trapi, kgr:kg-jensenlab-diseases.nodes.kgx, kgr:kg-monarch.graph, kgr:kg-monarch.graph.duckdb, kgr:kg-monarch.graph.jsonl, kgr:kg-monarch.graph.jsonl.edges, kgr:kg-monarch.graph.jsonl.nodes, kgr:kg-monarch.graph.neo4j, kgr:kg-monarch.graph.neo4j.edges, kgr:kg-monarch.graph.neo4j.nodes, kgr:kg-monarch.graph.rdf, kgr:kg-predict.gpkg, kgr:molepro.api, kgr:molepro.catalog, kgr:molepro.graph.edges, kgr:molepro.graph.nodes, kgr:molepro.trapi, kgr:petagraph.graph, kgr:pheknowlator.graph, kgr:skm.ckn.v1.annotations, kgr:skm.ckn.v1.graph, kgr:skm.ckn.v2.annotations, kgr:skm.ckn.v2.graph, kgr:spoke-okn.graph, kgr:spoke.graph, kgr:sri-reference-kg.graph, kgr:stitch.api, kgr:stitch.downloads, kgr:stitch.portal, kgr:string.api, kgr:string.clusters.info, kgr:string.clusters.proteins, kgr:string.clusters.tree, kgr:string.cog.links, kgr:string.cog.links.detailed, kgr:string.cog.mappings, kgr:string.database, kgr:string.database.evidence, kgr:string.database.items, kgr:string.database.schema, kgr:string.protein.aliases, kgr:string.protein.enrichment.terms, kgr:string.protein.homology, kgr:string.protein.info, kgr:string.protein.links, kgr:string.protein.links.detailed, kgr:string.protein.links.full, kgr:string.protein.network.embeddings, kgr:string.protein.orthology, kgr:string.protein.physical.links, kgr:string.protein.physical.links.detailed, kgr:string.protein.physical.links.full, kgr:string.protein.sequence.embeddings, kgr:string.protein.sequences, kgr:string.species, kgr:string.species.tree, kgr:string.web, kgr:tcrd.api, kgr:tcrd.database_download, kgr:tcrd.documentation, kgr:ubkg.csv, kgr:ubkg.neo4j, kgr:unibiomap.auxs, kgr:unibiomap.links, kgr:unibiomap.pred, kgr:unibiomap.pred.full ; schema1:identifier "string" ; schema1:name "STRING" ; skos:inScheme "genomics", "protein interactions", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:sty a schema1:Ontology ; rdfs:label "UMLS Semantic Types" ; dcterms:created "2026-02-26T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "UMLS Semantic Types are the broad subject categories in the UMLS Semantic Network used to categorize concepts in the UMLS Metathesaurus." ; dcterms:identifier "sty" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:medgen.csv, kgr:medgen.mgsty, kgr:obo-db-ingest.sty.json, kgr:obo-db-ingest.sty.obo, kgr:obo-db-ingest.sty.owl, kgr:obo-db-ingest.sty.tsv, kgr:sty.docs, kgr:sty.kg-bioportal, kgr:sty.semantic-groups, kgr:sty.semantic-network ; schema1:name "UMLS Semantic Types" ; skos:altLabel "STY", "UMLS semantic types" ; skos:inScheme "biomedical" ; adms:status "Active" ; foaf:homepage . kgr:sudokn a schema1:KnowledgeGraph ; rdfs:label "SUDOKN" ; dcterms:created "2025-12-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Supply and Demand Open Knowledge Network is an interconnected network of publicly available manufacturing capability data focused on Small and Medium-Sized Manufacturers." ; dcterms:identifier "sudokn" ; dcterms:isReferencedBy ; dcterms:modified "2026-07-03T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:sudokn.graph, kgr:sudokn.sparql, kgr:sudokn.tpf ; schema1:name "SUDOKN" ; doap:repository ; skos:inScheme "other" ; adms:status "Active" ; foaf:homepage . kgr:sugi-atlas a schema1:Aggregator ; rdfs:label "Sugi Atlas" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Sugi Atlas is a deterministic biomedical reference atlas with one canonical page for each human gene, drug and disease (about 52,600 pages when checked on 2026-10-04, 29,337 genes, 4,683 drugs and 18,607 diseases). Pages are assembled by a fixed plan of graph queries over BioBTree, which integrates 87 primary databases, and are rendered by template, with no language model in the loop, so every figure traces to its source. Each page is published as static HTML with a Markdown version and a schema.org JSON-LD record, for both human readers and AI agents. Gene, drug and disease pages are seeded from HGNC, Mondo and ChEMBL identifiers and are rebuilt at least monthly against new BioBTree releases." ; dcterms:identifier "sugi-atlas" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:sugi-atlas.code, kgr:sugi-atlas.manifest, kgr:sugi-atlas.portal, kgr:sugi-atlas.preprint, kgr:sugi-atlas.sources ; schema1:name "Sugi Atlas" ; doap:repository ; skos:altLabel "sugi.bio Atlas" ; skos:inScheme "biomedical", "clinical", "drug discovery", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:suppkg a schema1:KnowledgeGraph ; rdfs:label "SuppKG" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "SuppKG is a knowledge graph that integrates information about dietary supplements and their relationships with diseases, genes, proteins, and other biomedical entities, developed to support translational research and clinical decision-making." ; dcterms:identifier "suppkg" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-06-12T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:service-kp.trapi, kgr:suppkg.docs, kgr:suppkg.source-data ; schema1:identifier "suppkg" ; schema1:name "SuppKG" ; skos:altLabel "Dietary Supplement Knowledge Graph", "SuppKG" ; skos:inScheme "biomedical", "nutrition" ; adms:status "Active" ; foaf:homepage . kgr:surechembl a schema1:DataSource ; rdfs:label "SureChEMBL" ; dcterms:created "2026-06-15T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "SureChEMBL is a freely available, large-scale resource of chemical compounds extracted from the patent literature through automated text- and image-mining. Hosted by EMBL-EBI, it links millions of annotated chemical structures to the patent documents in which they appear, enabling search and discovery of chemistry disclosed in patents. The resource is updated continuously and made available for both interactive search and bulk download." ; dcterms:identifier "surechembl" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:surechembl.bulk-data, kgr:surechembl.docs, kgr:surechembl.search ; schema1:name "SureChEMBL" ; skos:inScheme "chemistry and biochemistry", "drug discovery", "literature" ; adms:status "Active" ; foaf:homepage . kgr:swisslipid a schema1:DataSource ; rdfs:label "SwissLipids" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "SwissLipids is a knowledge resource for lipids and their biology." ; dcterms:identifier "swisslipid" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:obo-db-ingest.swisslipid.json, kgr:obo-db-ingest.swisslipid.obo, kgr:obo-db-ingest.swisslipid.owl, kgr:obo-db-ingest.swisslipid.sssom.tsv, kgr:obo-db-ingest.swisslipid.tsv, kgr:swisslipid.api, kgr:swisslipid.enzymes, kgr:swisslipid.evidences, kgr:swisslipid.go, kgr:swisslipid.lipids, kgr:swisslipid.lipids2uniprot, kgr:swisslipid.portal, kgr:swisslipid.tissues ; schema1:name "SwissLipids" ; doap:repository ; skos:altLabel "slm", "swisslipid" ; skos:inScheme "chemistry and biochemistry", "metabolomics" ; adms:status "Active" ; foaf:homepage . kgr:swissmodel a schema1:DataSource ; rdfs:label "SWISS-MODEL" ; dcterms:created "2026-01-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A protein structure homology-modeling resource providing automated model generation workflows and a repository of precomputed structural models." ; dcterms:identifier "swissmodel" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:string.cog.links, kgr:string.cog.links.detailed, kgr:string.database, kgr:string.protein.links, kgr:string.protein.links.detailed, kgr:string.protein.links.full, kgr:string.protein.physical.links, kgr:string.protein.physical.links.detailed, kgr:string.protein.physical.links.full, kgr:swissmodel.api, kgr:swissmodel.portal, kgr:swissmodel.repository ; schema1:name "SWISS-MODEL" ; skos:altLabel "SWISS-MODEL", "SWISSMODEL" ; skos:inScheme "protein structure", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:swo a schema1:Ontology ; rdfs:label "Software ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, provenance and associated data. It contains detailed information on licensing and formats as well as software applications themselves, mainly (but not limited) to the bioinformatics community." ; dcterms:identifier "swo" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:swo.json, kgr:swo.kg-bioportal, kgr:swo.owl ; schema1:name "Software ontology" ; doap:repository ; skos:inScheme "biomedical", "information technology", "software" ; adms:status "Active" ; foaf:homepage . kgr:symp a schema1:Ontology ; rdfs:label "Symptom Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology of disease symptoms, with symptoms encompasing perceived changes in function, sensations or appearance reported by a patient indicative of a disease." ; dcterms:identifier "symp" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:symp.kg-bioportal, kgr:symp.obo, kgr:symp.owl ; schema1:identifier "symp" ; schema1:name "Symptom Ontology" ; doap:repository ; skos:inScheme "biomedical", "clinical" ; adms:status "Active" ; foaf:homepage . kgr:synlethdb a schema1:DataSource ; rdfs:label "SynLethDB" ; dcterms:created "2026-07-01T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "SynLethDB is a comprehensive database of synthetic lethality (SL) gene pairs and synthetic lethality-related interactions in human and other species. It aggregates SL and synthetic dosage lethality relationships assembled from biochemical and genetic screens, curated literature, other databases, and computational predictions, each annotated with supporting evidence and confidence scores. SynLethDB 2.0 further packages these relationships as a web-based knowledge graph (SynLethKG) that connects genes with compounds, diseases, pathways, and other biomedical entities to support anticancer drug-target discovery. It is the primary synthetic lethality data source underlying SynLethKG and downstream methods such as KG4SL." ; dcterms:identifier "synlethdb" ; dcterms:isReferencedBy , ; dcterms:modified "2026-09-08T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:kg4sl.synlethkg, kgr:synlethdb.download, kgr:synlethdb.portal ; schema1:name "SynLethDB" ; skos:inScheme "biomedical", "drug discovery", "genomics" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:zhenglab . kgr:t3db a schema1:DataSource ; rdfs:label "Toxin and Toxin Target Database" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Toxin and Toxin Target Database (T3DB), also known as the Toxic Exposome Database, is a bioinformatics resource from the Wishart lab that combines detailed toxin data with comprehensive toxin target information. It covers thousands of toxins, including pollutants, pesticides, drugs, and food toxins, annotated with chemical, toxicological, mechanistic, and target details across more than 90 data fields per record. Each toxin is linked to its corresponding protein, gene, or other molecular targets along with the associated mechanisms of toxicity. T3DB is an upstream primary source for PharmDB." ; dcterms:identifier "t3db" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-08T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:pharmdb.graph, kgr:t3db.downloads, kgr:t3db.portal ; schema1:name "Toxin and Toxin Target Database" ; skos:inScheme "chemistry and biochemistry", "pharmacology", "toxicology" ; adms:status "Active" ; foaf:homepage . kgr:t4fs a schema1:Ontology ; rdfs:label "terms4FAIRskills" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A terminology for the skills necessary to make data FAIR and to keep it FAIR." ; dcterms:identifier "t4fs" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:t4fs.json, kgr:t4fs.kg-bioportal, kgr:t4fs.obo, kgr:t4fs.owl ; schema1:name "terms4FAIRskills" ; doap:repository ; skos:inScheme "biomedical", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:tads a schema1:Ontology ; rdfs:label "Tick Anatomy Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The anatomy of the Tick, Families: Ixodidae, Argassidae" ; dcterms:identifier "tads" ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:tads.kg-bioportal, kgr:tads.obo, kgr:tads.owl ; schema1:name "Tick Anatomy Ontology" ; doap:repository ; skos:inScheme "anatomy and development" ; adms:status "Inactive" ; foaf:homepage . kgr:tahe a schema1:Ontology ; rdfs:label "Terminology of Anatomy of Human Embryology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Description unavailable." ; dcterms:identifier "tahe" ; dcterms:modified "2026-09-08T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:tahe.obo, kgr:tahe.owl ; schema1:name "Terminology of Anatomy of Human Embryology" ; skos:inScheme "anatomy and development" ; adms:status "Inactive" ; foaf:homepage . kgr:tahh a schema1:Ontology ; rdfs:label "Terminology of Anatomy of Human Histology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Description unavailable." ; dcterms:identifier "tahh" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:tahh.obo, kgr:tahh.owl ; schema1:name "Terminology of Anatomy of Human Histology" ; skos:inScheme "anatomy and development", "biomedical" ; adms:status "Inactive" ; foaf:homepage . kgr:tair a schema1:DataSource ; rdfs:label "The Arabidopsis Information Resource" ; dcterms:created "2025-12-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Arabidopsis Information Resource (TAIR) maintains a comprehensive database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. TAIR provides the complete genome sequence, gene structure and product information, gene expression data, DNA and seed stocks, genome maps, genetic and physical markers, publications, and community information. Gene product function data is updated weekly from published research and community submissions." ; dcterms:identifier "tair" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:genecards.web.interface, kgr:genophenoenvo-kg.data, kgr:neo.model, kgr:neo.obo, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db, kgr:skm.ckn.v1.annotations, kgr:skm.ckn.v1.graph, kgr:skm.ckn.v2.annotations, kgr:skm.ckn.v2.graph, kgr:skm.pss.live.boolnet.annotations, kgr:skm.pss.live.boolnet.graph, kgr:skm.pss.live.dot, kgr:skm.pss.live.sbgn, kgr:skm.pss.live.sbml, kgr:skm.pss.live.sif.dinar.graph, kgr:skm.pss.live.sif.original.annotations, kgr:skm.pss.live.sif.original.graph, kgr:skm.pss.live.sif.projection.annotations, kgr:skm.pss.live.sif.projection.graph ; schema1:name "The Arabidopsis Information Resource" ; skos:altLabel "TAIR" ; skos:inScheme "genomics", "model organisms", "organisms", "plants" ; adms:status "Active" ; foaf:homepage . kgr:tao a schema1:Ontology ; rdfs:label "Teleost Anatomy Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Multispecies fish anatomy ontology. Originally seeded from ZFA, but intended to cover terms relevant to other taxa" ; dcterms:identifier "tao" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:tao.kg-bioportal, kgr:tao.owl ; schema1:name "Teleost Anatomy Ontology" ; skos:inScheme "anatomy and development" ; adms:status "Inactive" ; foaf:homepage . kgr:tarbase a schema1:DataSource ; rdfs:label "TarBase" ; dcterms:created "2025-09-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "TarBase v9.0 is a comprehensive database of experimentally supported miRNA targets on protein-coding transcripts. It contains interactions identified via high-throughput methods (HITS-CLIP, PAR-CLIP, CLASH) and low-throughput experimental validation, all uniformly analyzed and manually curated with rich metadata." ; dcterms:identifier "tarbase" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:genecards.web.interface, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db, kgr:tarbase.downloads-doc, kgr:tarbase.help, kgr:tarbase.homo-sapiens, kgr:tarbase.interactions, kgr:tarbase.mus-musculus, kgr:tarbase.other-species, kgr:tarbase.portal, kgr:tarbase.statistics, kgr:tarbase.textmining, kgr:tarbase.viral, kgr:tarbase.visualizations ; schema1:name "TarBase" ; skos:inScheme "genomics", "non-coding RNA" ; adms:status "Active" ; foaf:homepage . kgr:taxrank a schema1:Ontology ; rdfs:label "Taxonomic rank vocabulary" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A vocabulary of taxonomic ranks (species, family, phylum, etc)" ; dcterms:identifier "taxrank" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:taxrank.kg-bioportal, kgr:taxrank.obo, kgr:taxrank.owl ; schema1:name "Taxonomic rank vocabulary" ; doap:repository ; skos:inScheme "organisms", "taxonomy" ; adms:status "Active" ; foaf:homepage . kgr:tbkg a schema1:KnowledgeGraph ; rdfs:label "Tumor-Biomarker Knowledge Graph" ; dcterms:created "2025-11-22T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A weighted heterogeneous knowledge graph containing four types of entities (Tumor, Biomarker, Drug, and ADR) extracted from MEDLINE corpus for adverse drug reaction discovery in antitumor drugs. TBKG uses a naive Bayesian model to explore correlations and provides explainable predictions through tumor-biomarker-drug pathways. The knowledge graph contains 1,179 tumors, 2,550 biomarkers, 1,806 drugs, and 756 ADRs with six types of relationships totaling 139,254 edges." ; dcterms:identifier "tbkg" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:tbkg.data, kgr:tbkg.osimertinib_case_study ; schema1:name "Tumor-Biomarker Knowledge Graph" ; doap:repository ; skos:inScheme "biomedical", "cancer", "clinical", "drug discovery", "pharmacology", "pharmacovigilance", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:tcdb a schema1:DataSource ; rdfs:label "Transporter Classification Database (TCDB)" ; dcterms:created "2026-01-28T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A curated classification database of membrane transport proteins, organized by the Transporter Classification (TC) system and supporting sequence- and family-level exploration." ; dcterms:identifier "tcdb" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:tcdb.blast, kgr:tcdb.download.acc2tcid, kgr:tcdb.download.families, kgr:tcdb.download.fasta, kgr:tcdb.download.go, kgr:tcdb.download.pdb, kgr:tcdb.download.pfam, kgr:tcdb.download.refseq, kgr:tcdb.download.substrates, kgr:tcdb.download.superfamilies, kgr:tcdb.download.tcdoms, kgr:tcdb.portal, kgr:unibiomap.auxs, kgr:unibiomap.links, kgr:unibiomap.pred, kgr:unibiomap.pred.full ; schema1:name "Transporter Classification Database (TCDB)" ; skos:altLabel "TCDB", "Transporter Classification Database" ; skos:inScheme "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:tcga a schema1:DataSource ; rdfs:label "The Cancer Genome Atlas" ; dcterms:created "2025-11-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Cancer Genome Atlas (TCGA) is a landmark cancer genomics program that molecularly characterized over 20,000 primary cancer and matched normal samples spanning 33 cancer types. This joint effort between NCI and the National Human Genome Research Institute began in 2006, bringing together researchers from diverse disciplines and multiple institutions. TCGA generated over 2.5 petabytes of genomic, epigenomic, transcriptomic, and proteomic data. The data, which has led to improvements in the ability to diagnose, treat, and prevent cancer, remains publicly available through the Genomic Data Commons for anyone in the research community to use." ; dcterms:identifier "tcga" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:activedriverdb.downloads, kgr:biomuta.dataset, kgr:chea-kg.graph, kgr:chea-kg.libraries, kgr:chea.libraries, kgr:connections-hypothesis-kp.graph, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:multiomics-kp.graph, kgr:tcga.gdc_api, kgr:tcga.gdc_portal, kgr:tcga.gdc_submission ; schema1:identifier "tcga" ; schema1:name "The Cancer Genome Atlas" ; skos:altLabel "TCGA" ; skos:inScheme "biomedical", "cancer", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:tcrd a schema1:DataSource ; rdfs:label "Target Central Resource Database" ; dcterms:created "2025-01-10T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Target Central Resource Database (TCRD) is a comprehensive multi-omics knowledge base developed by the NIH Common Fund Illuminating the Druggable Genome (IDG) program to catalog and illuminate the human proteome, with special focus on understudied proteins in four major druggable protein families G-protein coupled receptors (GPCRs), nuclear receptors, ion channels, and protein kinases. TCRD aggregates data from over 80 diverse sources including protein-protein interactions, disease associations, drug-target relationships, gene expression profiles, tissue specificity, pathway memberships, phenotype associations, and pharmacological data to create a unified resource for target prioritization and drug discovery research. The database employs a protein Target Development Level (TDL) classification system (Tclin, Tchem, Tbio, Tdark) that ranks proteins based on the amount of available knowledge, specifically highlighting understudied dark proteins that lack adequate characterization. TCRD contains extensive information on protein sequences, structures, functions, disease relationships, and chemical interactions, integrating data from resources such as UniProt, ChEMBL, DrugCentral, STRING, GTEx, OMIM, and many others. The database is designed to be machine-learning ready with structured data formats suitable for computational analysis and target prediction algorithms. TCRD serves as the backend data infrastructure for Pharos, the user-friendly web interface that enables researchers to browse, visualize, and analyze the integrated target data through interactive tools and visualizations. The resource is continuously updated with new data sources and releases, with current version 6.13.5 containing comprehensive annotations for the human proteome." ; dcterms:identifier "tcrd" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:digcfdekg.graph, kgr:kg-idg.graph, kgr:molepro.graph.edges, kgr:molepro.graph.nodes, kgr:prokn.idgd.compound.indication.diseaseorphenotype.edges, kgr:prokn.idgd.compound.nodes, kgr:prokn.idgp.compound.bioactivity.protein.edges, kgr:prokn.idgp.compound.nodes, kgr:tcrd.api, kgr:tcrd.database_download, kgr:tcrd.documentation ; schema1:identifier "tcrd" ; schema1:name "Target Central Resource Database" ; doap:repository ; skos:altLabel "IDG TCRD", "TCRD", "Target Central Resource Database" ; skos:inScheme "drug discovery", "genomics", "pharmacology", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:tera a schema1:KnowledgeGraph ; rdfs:label "TERA: Toxicological Effect and Risk Assessment Knowledge Graph" ; dcterms:created "2025-10-28T00:00:00+00:00"^^xsd:dateTime ; dcterms:description """The Toxicological Effect and Risk Assessment (TERA) Knowledge Graph is an integrated knowledge graph for ecological risk assessment based on chemical effect data from U.S. EPA ECOTOX. TERA aligns toxicological data to non-proprietary identifiers using ontology alignment tools and external sources such as Wikidata, enabling the use of external chemical knowledge graphs including ChEBI, PubChem, and MeSH. The knowledge graph also includes aggregated data from NCBI Taxonomy and Encyclopedia of Life (EOL) trait data. By linking ECOTOX to external sources, TERA enables the extrapolation of chemical effect data, extending the reach of ecological risk assessment while limiting the need for laboratory experiments. The knowledge graph has been applied to predict adverse biological effects of chemicals using knowledge graph embeddings and supports various applications in environmental toxicology and risk assessment. """ ; dcterms:identifier "tera" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:tera.cas-to-mesh-csv, kgr:tera.chebi-to-mesh-csv, kgr:tera.chembl-to-mesh-csv, kgr:tera.cid-to-mesh-csv, kgr:tera.documentation, kgr:tera.ecotox-chemical-nt, kgr:tera.ecotox-taxonomy-nt, kgr:tera.effects-nt, kgr:tera.mesh-nt, kgr:tera.ncbi-nt, kgr:tera.ncbi-to-eol-csv, kgr:tera.python-package, kgr:tera.traits-nt, kgr:tera.zenodo-dataset ; schema1:name "TERA: Toxicological Effect and Risk Assessment Knowledge Graph" ; doap:repository ; skos:inScheme "environment", "toxicology" ; adms:status "Active" ; foaf:homepage . kgr:text-mining-kp a schema1:KnowledgeGraph ; rdfs:label "Text Mining KP" ; dcterms:created "2026-01-22T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Translator Text Mining Provider that produces knowledge-graph assertions from literature mining workflows and exposes them as a KGX graph." ; dcterms:identifier "text-mining-kp" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:automat.robokopkg, kgr:automat.robokopplus, kgr:automat.tmkp, kgr:cqs.code, kgr:service-kp.trapi, kgr:text-mining-kp.graph, kgr:translator.tmkp.graph, kgr:translator.translator_kg.graph ; schema1:identifier "textmining-kp" ; schema1:name "Text Mining KP" ; doap:repository ; skos:altLabel "tmkp" ; skos:inScheme "biomedical", "literature", "natural language processing" ; skos:related "translator" ; adms:status "Active" ; foaf:homepage . kgr:tfacts a schema1:DataSource ; rdfs:label "TFactS" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "TFactS is a catalogue of literature-curated, signed transcription factor to target gene regulatory interactions, where each interaction records whether a transcription factor up-regulates or down-regulates its target. By comparing these curated \"regulons\" against differentially expressed genes, TFactS infers the activation or repression state of transcription factors from gene expression (microarray) data. It served as a foundational upstream source for the DoRothEA regulon collection. The original web service at tfacts.org is no longer operational and the domain has been re-registered for unrelated content." ; dcterms:identifier "tfacts" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:dorothea.graph, kgr:tfacts.publication ; schema1:name "TFactS" ; skos:inScheme "gene regulation", "genomics", "pathways", "systems biology" ; adms:status "Inactive" ; foaf:homepage . kgr:tgma a schema1:Ontology ; rdfs:label "Mosquito gross anatomy ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A structured controlled vocabulary of the anatomy of mosquitoes." ; dcterms:identifier "tgma" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:tgma.kg-bioportal, kgr:tgma.obo, kgr:tgma.owl ; schema1:name "Mosquito gross anatomy ontology" ; doap:repository ; skos:inScheme "anatomy and development", "insects", "organisms" ; adms:status "Inactive" ; foaf:homepage . kgr:tiga a schema1:DataSource ; rdfs:label "Target Illumination GWAS Analytics" ; dcterms:created "2025-12-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Target Illumination GWAS Analytics (TIGA) database is a manually curated resource containing genotype-phenotype associations pulled from numerous genome-wide association studies (GWAS). TIGA provides bibliometric assessment of scientific consensus based on iCite Relative Citation Ratio and meanRank scores for aggregate multivariate evidence, supporting target illumination and validation in translational research. TIGA is part of the NCATS Translator Knowledge Provider ecosystem." ; dcterms:identifier "tiga" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:tiga.downloads, kgr:tiga.portal ; schema1:identifier "tiga" ; schema1:name "Target Illumination GWAS Analytics" ; skos:altLabel "TIGA" ; skos:inScheme "biomedical", "genome-wide association studies", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:tissues a schema1:Aggregator ; rdfs:label "TISSUES" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "TISSUES is an integrative web resource providing evidence on tissue-specific gene and protein expression in mammals. The database combines manually curated literature, large-scale proteomics and transcriptomics screens, and automatic text mining, mapping all evidence to common protein identifiers and Brenda Tissue Ontology terms with unified confidence scores for cross-comparison." ; dcterms:identifier "tissues" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:alzkb.browser, kgr:alzkb.data, kgr:bioteque.embeddings, kgr:cancer-genome-interpreter.clinicalkg.graph, kgr:clinicalkg.graph, kgr:genecards.web.interface, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:ibkh.graph, kgr:string.cog.links, kgr:string.cog.links.detailed, kgr:string.database, kgr:string.protein.links, kgr:string.protein.links.detailed, kgr:string.protein.links.full, kgr:string.protein.physical.links, kgr:string.protein.physical.links.detailed, kgr:string.protein.physical.links.full, kgr:tissues.downloads, kgr:tissues.search, kgr:tissues.web ; schema1:identifier "tissues" ; schema1:name "TISSUES" ; doap:repository ; skos:altLabel "TISSUES 2.0" ; skos:inScheme "anatomy and development", "gene expression profiling", "genomics", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:tmrnawebsite a schema1:DataSource ; rdfs:label "The tmRNA Website" ; dcterms:created "2025-09-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The tmRNA Website is a comprehensive database of transfer-messenger RNA (tmRNA) and SmpB protein sequences involved in bacterial trans-translation. Contains 1,716 unique tmRNA sequences from bacteria and organelles, 2,258 unique SmpB sequences, with 9,387 tmRNA instances across public databases. Provides sequence alignments, structural annotations, BLAST search tools, and Krona-based phylogenetic visualization." ; dcterms:identifier "tmrnawebsite" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db, kgr:tmrnawebsite.alignments, kgr:tmrnawebsite.blast, kgr:tmrnawebsite.krona-viewer, kgr:tmrnawebsite.portal, kgr:tmrnawebsite.software ; schema1:name "The tmRNA Website" ; skos:altLabel "tmRNA website", "tmRNA-SmpB database" ; skos:inScheme "genomics", "non-coding RNA" ; adms:status "Inactive" ; foaf:homepage . kgr:to a schema1:Ontology ; rdfs:label "Plant Trait Ontology" ; dcterms:created "2025-06-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A controlled vocabulary to describe phenotypic traits in plants." ; dcterms:identifier "to" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:eco-kg.graph, kgr:efo.obo, kgr:efo.owl, kgr:genophenoenvo-kg.data, kgr:to.kg-bioportal, kgr:to.obo, kgr:to.owl ; schema1:name "Plant Trait Ontology" ; doap:repository ; skos:inScheme "organisms", "phenotype", "plants" ; adms:status "Active" ; foaf:homepage . kgr:togows a schema1:Aggregator ; rdfs:label "TogoWS" ; dcterms:created "2026-10-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "TogoWS is a set of uniform REST web services from the Database Center for Life Science (DBCLS, Japan) for retrieving, searching and converting entries from major bioinformatics databases, including UniProt, ENA, DDBJ, NCBI Nucleotide, NCBI Gene, dbSNP, PubMed, PDB, OMIM and KEGG, plus a REST API over the UCSC Genome Browser databases. Entries are fetched from the upstream databases on request and returned in formats such as JSON, Turtle, XML, GFF and FASTA. It was originally built to unify the REST and SOAP services of NCBI, EBI, DDBJ, PDB and KEGG." ; dcterms:identifier "togows" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:klocd.portal, kgr:togows.convert, kgr:togows.rest-api, kgr:togows.ucsc-api ; schema1:name "TogoWS" ; skos:inScheme "biomedical", "genomics", "information technology", "software" ; adms:status "Active" ; foaf:homepage . kgr:topmed a schema1:DataSource ; rdfs:label "NHLBI Trans-Omics for Precision Medicine" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The NHLBI Trans-Omics for Precision Medicine (TOPMed) program generates scientific resources to enhance understanding of fundamental biological processes that underlie heart, lung, blood, and sleep disorders, providing whole genome sequencing and multi-omics data from diverse populations." ; dcterms:identifier "topmed" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:biodata-catalyst.analysis-platforms, kgr:biodata-catalyst.gen3, kgr:biodata-catalyst.imputation-server, kgr:biodata-catalyst.picsure, kgr:biodata-catalyst.picsure-api, kgr:biodata-catalyst.portal, kgr:dbnsfp.academic, kgr:dbnsfp.commercial, kgr:topmed.data-access, kgr:topmed.portal, kgr:topmed.wgs-counts ; schema1:identifier "topmed" ; schema1:name "NHLBI Trans-Omics for Precision Medicine" ; skos:altLabel "TOPMed", "Trans-Omics for Precision Medicine" ; skos:inScheme "biomedical", "cardiovascular disease", "clinical", "genetic variation", "genomics", "precision medicine" ; adms:status "Active" ; foaf:homepage . kgr:tox21 a schema1:DataSource ; rdfs:label "Tox21 (Toxicology in the 21st Century)" ; dcterms:created "2026-07-01T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Tox21 (Toxicology in the 21st Century) is a US federal collaboration among the National Institutes of Health (NIH) National Center for Advancing Translational Sciences (NCATS), the US Environmental Protection Agency (EPA), the National Toxicology Program at the National Institute of Environmental Health Sciences (NTP/NIEHS), and the US Food and Drug Administration (FDA). The consortium uses quantitative high-throughput screening to test a library of approximately 10,000 chemicals, including environmental compounds and approved drugs, against a panel of biological assays that probe nuclear-receptor signaling and cellular stress-response pathways. The resulting data are used to predict potential toxicity and to prioritize chemicals for further, more targeted testing." ; dcterms:identifier "tox21" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biobricks-tox21.graph, kgr:tox21.data ; schema1:name "Tox21 (Toxicology in the 21st Century)" ; skos:inScheme "biomedical", "chemistry and biochemistry", "drug discovery", "environment", "high-throughput screening", "toxicology" ; adms:status "Active" ; foaf:homepage . kgr:toxcast a schema1:DataSource ; rdfs:label "ToxCast" ; dcterms:created "2025-09-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "ToxCast (US EPA Toxicity Forecaster) is a high-throughput screening program generating bioactivity profiles for thousands of environmental chemicals across diverse in vitro assays to prioritize substances for hazard characterization, integrate exposure and pathway information, and support predictive toxicology." ; dcterms:identifier "toxcast" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:aop-db.data, kgr:biobricks-toxcast.graph, kgr:toxcast.api, kgr:toxcast.downloads, kgr:toxcast.portal ; schema1:name "ToxCast" ; skos:inScheme "biomedical", "drug discovery", "environment", "high-throughput screening", "public health", "toxicology" ; adms:status "Active" ; foaf:homepage . kgr:toxin a schema1:KnowledgeGraph ; rdfs:label "TOXIN" ; dcterms:created "2025-08-31T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "TOXIN is a knowledge graph resource integrating curated information about toxic compounds, their molecular targets, mechanisms, pathways, and associated phenotypic or clinical outcomes to facilitate toxicological risk assessment and mechanistic discovery." ; dcterms:identifier "toxin" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-06-05T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:toxin.web ; schema1:name "TOXIN" ; skos:inScheme "biomedical", "systems biology", "toxicology" ; adms:status "Active" ; foaf:homepage . kgr:trans a schema1:Ontology ; rdfs:label "Pathogen Transmission Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology representing the disease transmission process during which the pathogen is transmitted directly or indirectly from its natural reservoir, a susceptible host or source to a new host." ; dcterms:identifier "trans" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:trans.kg-bioportal, kgr:trans.obo, kgr:trans.owl ; schema1:name "Pathogen Transmission Ontology" ; doap:repository ; skos:inScheme "biomedical", "infectious disease" ; adms:status "Active" ; foaf:homepage . kgr:translator a schema1:Aggregator ; rdfs:label "NCATS Translator Graph Releases" ; dcterms:created "2026-01-22T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Aggregated, transformed graph datasets distributed by the NCATS Translator program via the Translator KGX release site. Each package provides a KGX graph built from an upstream source and normalized with Translator pipelines." ; dcterms:identifier "translator" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ctkp.docs, kgr:ctkp.smartapi, kgr:drug-approvals-kp.code, kgr:genetics-kp.trapi, kgr:icees-kg.metadata, kgr:icees-kg.trapi, kgr:ohd-carolina.trapi, kgr:retriever.api, kgr:text-mining-kp.graph, kgr:translator.alliance.graph, kgr:translator.bgee.graph, kgr:translator.bindingdb.graph, kgr:translator.chembl.graph, kgr:translator.cohd.graph, kgr:translator.ctd.graph, kgr:translator.ctkp.graph, kgr:translator.dakp.graph, kgr:translator.dgidb.graph, kgr:translator.diseases.graph, kgr:translator.drug_rep_hub.graph, kgr:translator.drugcentral.graph, kgr:translator.gene2phenotype.graph, kgr:translator.geneticskp.graph, kgr:translator.go_cam.graph, kgr:translator.goa.graph, kgr:translator.gtopdb.graph, kgr:translator.hpoa.graph, kgr:translator.icees.graph, kgr:translator.intact.graph, kgr:translator.panther.graph, kgr:translator.pathbank.graph, kgr:translator.semmeddb.graph, kgr:translator.sider.graph, kgr:translator.signor.graph, kgr:translator.tmkp.graph, kgr:translator.translator_kg.graph, kgr:translator.ttd.graph, kgr:translator.ubergraph.graph ; schema1:name "NCATS Translator Graph Releases" ; doap:repository ; skos:inScheme "biomedical", "clinical", "drug discovery" ; skos:related "translator" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:translator-program . kgr:treatkb a schema1:DataSource ; rdfs:label "TreatKB" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "TreatKB is a text-mined knowledge base of drug-treats-disease (treatment) relationships developed by the Rong Xu lab at Case Western Reserve University. Treatment pairs are extracted and combined from multiple lines of evidence, including MEDLINE/PubMed literature, the FDA Adverse Event Reporting System (FAERS), and ClinicalTrials.gov records, alongside a curated gold-standard set of drug-disease treatment pairs. The data are distributed as plain-text files from the Xu lab public data server. TreatKB has been used as a source to construct GP-KG." ; dcterms:identifier "treatkb" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:gp-kg.graph, kgr:treatkb.goldstandard, kgr:treatkb.publication ; schema1:name "TreatKB" ; skos:inScheme "clinical", "drug discovery", "literature", "natural language processing", "pharmacology" ; adms:status "Active" ; foaf:homepage . kgr:tred a schema1:DataSource ; rdfs:label "Transcriptional Regulatory Element Database" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "TRED (Transcriptional Regulatory Element Database) was a curated database of cis-regulatory elements, with an emphasis on transcription factor (TF) binding sites, TF-promoter regulatory interactions, and promoter annotations for human, mouse, and rat genes. It combined computational promoter prediction with literature-based manual curation of regulatory interactions, and was originally developed and hosted at Cold Spring Harbor Laboratory. TRED served as an upstream primary source for downstream regulatory network resources such as DoRothEA. The resource is now legacy and effectively superseded; its original hosting sites are no longer serving content, and it was dropped from some downstream tools due to licensing constraints." ; dcterms:identifier "tred" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:dorothea.graph, kgr:tred.docs ; schema1:name "Transcriptional Regulatory Element Database" ; skos:inScheme "gene regulation", "genomics", "systems biology" ; adms:status "Inactive" ; foaf:homepage . kgr:treefam a schema1:DataSource ; rdfs:label "TreeFam" ; dcterms:created "2026-06-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "TreeFam (Tree families database) is a database of phylogenetic trees of animal gene families. It provides curated and automatically generated gene trees, inferred orthologs and paralogs, and gene family annotations across a wide range of animal species." ; dcterms:identifier "treefam" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:genecards.web.interface, kgr:treefam.downloads, kgr:treefam.site ; schema1:name "TreeFam" ; skos:inScheme "genomics", "molecular evolution", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:trrust a schema1:DataSource ; rdfs:label "TRRUST" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "TRRUST (Transcriptional Regulatory Relationships Unraveled by Sentence-based Text mining) is a manually curated database of human and mouse transcriptional regulatory networks. Its interactions are extracted from sentences in PubMed abstracts using sentence-based text mining followed by manual expert curation, capturing transcription factor (TF) to target-gene relationships along with the mode of regulation (activation, repression, or unknown). The v2 release contains 8,444 human and 6,552 mouse TF-target regulatory interactions derived from over 11,000 PubMed articles, each linked to the supporting literature evidence. TRRUST serves as an upstream primary source for derived regulatory-network resources such as DoRothEA." ; dcterms:identifier "trrust" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:dorothea.graph, kgr:trrust.human.tsv, kgr:trrust.mouse.tsv, kgr:trrust.web ; schema1:name "TRRUST" ; skos:inScheme "gene regulation", "genomics", "literature", "natural language processing", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:try a schema1:DataSource ; rdfs:label "TRY Plant Trait Database" ; dcterms:created "2026-01-15T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The TRY Plant Trait Database aggregates global plant trait measurements contributed by researchers and institutions, widely used for ecological and metabolomic analyses." ; dcterms:identifier "try" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:emikg.kg, kgr:emikg.sparql, kgr:emikg.web, kgr:try.portal ; schema1:identifier "try" ; schema1:name "TRY Plant Trait Database" ; skos:inScheme "environment", "organisms", "plants" ; adms:status "Active" ; foaf:homepage . kgr:ttd a schema1:Aggregator ; rdfs:label "Therapeutic Target Database" ; dcterms:created "2025-10-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Therapeutic Target Database (TTD) is a comprehensive aggregator providing information about known and explored therapeutic protein and nucleic acid targets, targeted diseases, pathway information, and corresponding drugs directed at these targets. TTD 2024 includes extensive druggability information across three perspectives: molecular interactions/regulations, human system profiles, and cell-based expression variations. The database encompasses 3,730 targets (including 532 successful, 1,442 clinical trial, 239 preclinical/patented, and 1,517 literature-reported targets) and 39,862 drugs, with druggability characteristics covering ligand-specific binding pockets, protein-protein interaction networks, microbiota-drug regulations, target similarity profiles, pathway involvements, tissue distributions, and cell-based expression variations across different diseases and perturbations." ; dcterms:identifier "ttd" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:genecards.web.interface, kgr:kg-covid-19.graph, kgr:medkg.site, kgr:multiomics-kp.graph, kgr:oregano.graph, kgr:pharmdb.graph, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:pharmkg.graph, kgr:service-kp.trapi, kgr:stitch.api, kgr:stitch.downloads, kgr:stitch.portal, kgr:translator.translator_kg.graph, kgr:translator.ttd.graph, kgr:ttd.biomarker-disease, kgr:ttd.crossmatch, kgr:ttd.drug-combinations, kgr:ttd.drug-disease, kgr:ttd.drugs-raw, kgr:ttd.help, kgr:ttd.kegg-pathways, kgr:ttd.portal, kgr:ttd.sequences-all, kgr:ttd.smiles-inchi, kgr:ttd.structures-all, kgr:ttd.synonyms, kgr:ttd.target-compound, kgr:ttd.target-disease, kgr:ttd.target-drug, kgr:ttd.targets-raw, kgr:ttd.uniprot-all, kgr:ttd.wiki-pathways ; schema1:identifier "ttd" ; schema1:name "Therapeutic Target Database" ; skos:inScheme "biomedical", "drug discovery", "genomics", "pharmacology", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:tto a schema1:Ontology ; rdfs:label "Teleost taxonomy ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology covering the taxonomy of teleosts (bony fish)" ; dcterms:identifier "tto" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:tto.kg-bioportal, kgr:tto.obo, kgr:tto.owl ; schema1:name "Teleost taxonomy ontology" ; doap:repository ; skos:inScheme "organisms", "taxonomy" ; adms:status "Active" ; foaf:homepage . kgr:txpo a schema1:Ontology ; rdfs:label "Toxic Process Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "TOXic Process Ontology (TXPO) systematizes a wide variety of terms involving toxicity courses and processes. The first version of TXPO focuses on liver toxicity." ; dcterms:identifier "txpo" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:txpo.kg-bioportal, kgr:txpo.owl ; schema1:name "Toxic Process Ontology" ; doap:repository ; skos:inScheme "chemistry and biochemistry", "toxicology" ; adms:status "Active" ; foaf:homepage . kgr:ubergraph a schema1:KnowledgeGraph ; rdfs:label "Ubergraph" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Integrated suite of OBO ontologies with precomputed inferred relationships" ; dcterms:identifier "ubergraph" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:automat.alliance-orthologs, kgr:automat.binding, kgr:automat.camkp, kgr:automat.cebs, kgr:automat.cohd, kgr:automat.ctkp, kgr:automat.ehr-clinical-connections, kgr:automat.maytreatkp, kgr:automat.molepro, kgr:automat.reactome, kgr:automat.robokopkg, kgr:automat.tmkp, kgr:automat.ubergraph, kgr:automat.viralproteome, kgr:ontology-kp.graph, kgr:translator.translator_kg.graph, kgr:translator.ubergraph.graph, kgr:ubergraph.blazegraph.jnl, kgr:ubergraph.nquads, kgr:ubergraph.rdf, kgr:ubergraph.sparql, kgr:ubergraph.tpf ; schema1:identifier "ubergraph" ; schema1:name "Ubergraph" ; doap:repository ; skos:inScheme "biological systems" ; adms:status "Active" ; foaf:homepage . kgr:uberon a schema1:Ontology ; rdfs:label "Uberon multi-species anatomy ontology" ; dcterms:created "2025-05-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An integrated cross-species anatomy ontology covering animals and bridging multiple species-specific ontologies" ; dcterms:identifier "uberon" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:acukg.csv, kgr:acukg.json, kgr:acukg.rdf, kgr:alzkb.browser, kgr:alzkb.data, kgr:babel.compendia, kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:biomarker.bkg.edges.anatomy, kgr:biomarker.bkg.nodes.anatomy, kgr:ctd.anatomy, kgr:drugmechdb.graph, kgr:efo.obo, kgr:efo.owl, kgr:genomickb.graph, kgr:gp-kg.graph, kgr:hetionet.data.edges, kgr:hetionet.data.json, kgr:hetionet.data.neo4j, kgr:hetionet.data.nodes, kgr:hetionet.hetnetpy, kgr:hetionet.neo4j, kgr:hetionet.search, kgr:hra-kg.graph.json, kgr:hra-kg.graph.nq, kgr:hra-kg.graph.nt, kgr:hra-kg.graph.ttl, kgr:hra-kg.graph.xml, kgr:hra.data, kgr:hra.knowledge-graph, kgr:ibkh.graph, kgr:mechreponet.kg, kgr:medkg.site, kgr:metabokg.graph, kgr:metabokg.schema, kgr:microbiomekg.api, kgr:nlm-ckn.graph, kgr:np-kg.graph.networkx, kgr:np-kg.graph.tsv, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:pheknowlator.graph, kgr:primekg.graph, kgr:rna-kg.kg.edges, kgr:rna-kg.kg.neo4j, kgr:rna-kg.kg.nodes, kgr:rtx-kg2.graph.edges, kgr:rtx-kg2.graph.nodes, kgr:rtx-kg2.neo4j, kgr:service-kp.trapi, kgr:spoke-okn.graph, kgr:spoke.graph, kgr:sri-reference-kg.graph, kgr:uberon.collected-metazoan.owl, kgr:uberon.composite-metazoan.owl, kgr:uberon.composite-vertebrate.owl, kgr:uberon.kg-bioportal, kgr:uberon.owl, kgr:uberon.uberon-base.owl, kgr:uberon.uberon-basic.obo, kgr:ubkg.csv, kgr:ubkg.neo4j, kgr:unibiomap.auxs, kgr:unibiomap.links, kgr:unibiomap.pred, kgr:unibiomap.pred.full ; schema1:identifier "uberon" ; schema1:name "Uberon multi-species anatomy ontology" ; doap:repository ; skos:inScheme "anatomy and development" ; adms:status "Active" ; foaf:homepage . kgr:ubkg a schema1:KnowledgeGraph ; rdfs:label "Unified Biomedical Knowledge Graph" ; dcterms:created "2025-05-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Unified Biomedical Knowledge Graph (UBKG) is a knowledge graph infrastructure that represents a set of interrelated concepts from biomedical ontologies and vocabularies. It combines information from the National Library of Medicine's Unified Medical Language System (UMLS) with sets of assertions from ontologies outside the UMLS to establish connections between different sets of assertions that can enable discovery of previously unknown relationships." ; dcterms:identifier "ubkg" ; dcterms:license ; dcterms:modified "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:biomarker.kg, kgr:cfde-ddkg.downloads, kgr:cfde-ddkg.portal, kgr:petagraph.graph, kgr:ubkg.api, kgr:ubkg.csv, kgr:ubkg.guesdt, kgr:ubkg.neo4j ; schema1:name "Unified Biomedical Knowledge Graph" ; doap:repository ; skos:inScheme "biomedical", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:ucnebase a schema1:DataSource ; rdfs:label "UCNEbase" ; dcterms:created "2026-06-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "UCNEbase is a database of ultraconserved non-coding elements (UCNEs) and genomic regulatory blocks. It catalogues highly conserved non-coding elements across vertebrate genomes and organizes them by their associated target genes and regulatory blocks." ; dcterms:identifier "ucnebase" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:genecards.web.interface, kgr:ucnebase.site ; schema1:name "UCNEbase" ; skos:inScheme "gene regulation", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:ucsc a schema1:DataSource ; rdfs:label "UCSC Genome Browser" ; dcterms:created "2026-06-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The UCSC Genome Browser is a web-based tool and data resource providing access to reference genome assemblies and an extensive collection of aligned annotation tracks for human and many other organisms. It supports interactive visualization, bulk data download, and programmatic access to genomic annotations." ; dcterms:identifier "ucsc" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cadd.snvs.grch37, kgr:cadd.snvs.grch38, kgr:dbnsfp.academic, kgr:dbnsfp.commercial, kgr:genecards.web.interface, kgr:mygene.api, kgr:togows.ucsc-api, kgr:ucsc.api, kgr:ucsc.browser, kgr:ucsc.downloads, kgr:ucsc.tablebrowser ; schema1:name "UCSC Genome Browser" ; skos:inScheme "genomics" ; adms:status "Active" ; foaf:homepage . kgr:uf-okn a schema1:KnowledgeGraph ; rdfs:label "UF-OKN" ; dcterms:created "2025-08-07T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Urban Flooding Open Knowledge Network (UF-OKN) is an informational infrastructure built using knowledge graphs aiming to extract structured content from the information scattered across open-source geospatial datasets and hydrologic models." ; dcterms:identifier "uf-okn" ; dcterms:license "Open Database License (ODbL) 1.0" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:uf-okn.code, kgr:uf-okn.graph, kgr:uf-okn.portal, kgr:uf-okn.sparql, kgr:uf-okn.tpf ; schema1:name "UF-OKN" ; doap:repository ; skos:inScheme "environment", "water resources" ; adms:status "Active" ; foaf:homepage . kgr:ukbiobank a schema1:DataSource ; rdfs:label "UK Biobank" ; dcterms:created "2025-06-27T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "UK Biobank is a large-scale biomedical database and research resource containing genetic, lifestyle and health information from half a million UK participants, designed to improve the prevention, diagnosis and treatment of a wide range of serious and life-threatening illnesses." ; dcterms:identifier "ukbiobank" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:cardiokg.data, kgr:cardiokg.neo4j, kgr:disgenet.data, kgr:epigraphdb.graph, kgr:prsatlas.dryad, kgr:prsatlas.results_5e05, kgr:prsatlas.results_5e08, kgr:ukbiobank.showcase ; schema1:name "UK Biobank" ; skos:inScheme "biomedical", "clinical", "genome-wide association studies", "genomics", "phenotype" ; adms:status "Active" ; foaf:homepage . kgr:umls a schema1:Aggregator ; rdfs:label "Unified Medical Language System" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Unified Medical Language System (UMLS) integrates and distributes over 200 biomedical vocabularies, terminologies, and classification standards to enable interoperability between information systems. It includes the Metathesaurus (terms and codes from vocabularies like CPT, ICD-10-CM, LOINC, MeSH, RxNorm, SNOMED CT), Semantic Network (broad categories and relationships), and SPECIALIST Lexicon (biomedical and general English lexicon with normalization tools)." ; dcterms:identifier "umls" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:babel.compendia, kgr:bioportal.api, kgr:bioportal.portal, kgr:cfde-ddkg.downloads, kgr:cfde-ddkg.portal, kgr:eram.downloads, kgr:eram.web, kgr:genecards.web.interface, kgr:gp-kg.graph, kgr:hetionet.data.edges, kgr:hetionet.data.json, kgr:hetionet.data.neo4j, kgr:hetionet.data.nodes, kgr:hetionet.hetnetpy, kgr:hetionet.neo4j, kgr:hetionet.search, kgr:ibkh.graph, kgr:icees-kg.graph, kgr:icees-kg.metadata, kgr:icees-kg.trapi, kgr:kg-predict.gpkg, kgr:med-rt.core_dts, kgr:med-rt.core_spl, kgr:med-rt.core_xml, kgr:medgen.csv, kgr:medgen.merged, kgr:medgen.mgconso, kgr:medgen.mgdef, kgr:medgen.mgrel, kgr:medgen.mgsat, kgr:medgen.mgsty, kgr:medgen.names, kgr:mind.entities, kgr:mind.relations, kgr:mind.test, kgr:mind.train, kgr:mind.valid, kgr:mychem.api, kgr:mydisease.api, kgr:mygene.api, kgr:ndfrt.umls, kgr:oregano.graph, kgr:petagraph.graph, kgr:primekg.graph, kgr:rdkg.tpf, kgr:rtx-kg2.graph.edges, kgr:rtx-kg2.graph.nodes, kgr:rtx-kg2.neo4j, kgr:tbkg.data, kgr:tbkg.osimertinib_case_study, kgr:ubkg.api, kgr:ubkg.guesdt, kgr:umls.api, kgr:umls.browser, kgr:umls.metamorphosys, kgr:umls.release, kgr:umls.semantic_network_browser, kgr:umls.specialist_lexicon, kgr:unibiomap.auxs, kgr:unibiomap.disease_desc, kgr:unibiomap.links, kgr:unibiomap.pred, kgr:unibiomap.pred.full ; schema1:identifier "umls" ; schema1:name "Unified Medical Language System" ; skos:altLabel "UMLS" ; skos:inScheme "biomedical", "clinical", "clinical coding", "literature" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ncbi . kgr:unibiomap a schema1:KnowledgeGraph ; rdfs:label "UniBioMap" ; dcterms:created "2026-01-28T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "UniBioMap (Unified Biomedical knowledge Map) is an AI-ready biomedical knowledge graph integrating over 30 heterogeneous resources through robust identifier normalization, covering 6 key entity types with 21 million curated relations across 38 fine-grained types. A confident learning framework assigns reliability scores and predicts 34 million high-confidence triples, establishing a foundational resource for target identification and machine learning-based biomedical discovery." ; dcterms:hasVersion "1.0.0" ; dcterms:identifier "unibiomap" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:unibiomap.auxs, kgr:unibiomap.code, kgr:unibiomap.compound_desc, kgr:unibiomap.disease_desc, kgr:unibiomap.go_desc, kgr:unibiomap.links, kgr:unibiomap.pathway_desc, kgr:unibiomap.phenotype_desc, kgr:unibiomap.pred, kgr:unibiomap.pred.full, kgr:unibiomap.protein_desc, kgr:unibiomap.web ; schema1:name "UniBioMap" ; doap:repository ; skos:inScheme "biomedical", "chemistry and biochemistry", "drug discovery", "genomics", "information technology", "machine learning", "pathways", "phenotype", "proteomics", "systems biology" ; adms:status "Active" ; foaf:homepage . kgr:unicarbkb a schema1:DataSource ; rdfs:label "UniCarbKB" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "UniCarbKB is a glycomics and glycoproteomics knowledge platform that curates glycan structures of glycoproteins, biological source context, experimental methods, literature evidence, and protein links for glycobiology research." ; dcterms:identifier "unicarbkb" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:glycocoo.rdf-samples, kgr:unicarbkb.article, kgr:unicarbkb.portal ; schema1:name "UniCarbKB" ; skos:altLabel "UniCarb KnowledgeBase" ; skos:inScheme "chemistry and biochemistry", "glycomics", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:unichem a schema1:Aggregator ; rdfs:label "UniChem" ; dcterms:created "2025-11-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "UniChem is a large-scale non-redundant database maintained by EMBL-EBI that provides cross-references between chemical structures across multiple chemistry resources. It serves as a unified system for creating and maintaining structure-based hyperlinks between chemistry databases, particularly optimized for on-the-fly link creation via REST web services. UniChem aggregates compound identifiers from major chemistry resources including ChEMBL, ChEBI, SureChEMBL, PubChem, DrugBank, and many others, enabling efficient cross-database chemical structure queries using InChI, InChIKey, or source-specific identifiers." ; dcterms:identifier "unichem" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:klocd.portal, kgr:molepro.graph.edges, kgr:molepro.graph.nodes, kgr:mps-db.portal, kgr:mychem.api, kgr:pathwaycommons.biopax, kgr:pathwaycommons.downloads, kgr:pathwaycommons.gmt, kgr:pathwaycommons.sif, kgr:pathwaycommons.txt, kgr:pubchem.substances.asn, kgr:pubchem.substances.sdf, kgr:unibiomap.auxs, kgr:unibiomap.links, kgr:unibiomap.pred, kgr:unibiomap.pred.full, kgr:unichem.api, kgr:unichem.docs, kgr:unichem.docs.uci, kgr:unichem.search, kgr:unichem.sources ; schema1:identifier "unichem" ; schema1:name "UniChem" ; skos:altLabel "unichem" ; skos:inScheme "cheminformatics", "chemistry and biochemistry", "drug discovery", "pharmacology" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ebi . kgr:unii a schema1:DataSource ; rdfs:label "FDA Global Substance Registration System (UNII)" ; dcterms:created "2025-07-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "FDA's Global Substance Registration System (GSRS) is a comprehensive database that provides Unique Ingredient Identifiers (UNIIs) for substances in FDA-regulated products. UNIIs uniquely define substances based on scientific identity characteristics using ISO 11238 data elements, enabling efficient and accurate exchange of substance information across regulatory domains." ; dcterms:identifier "unii" ; dcterms:isReferencedBy ; dcterms:modified "2026-06-12T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:babel.compendia, kgr:dailymed.spl_files, kgr:mechreponet.kg, kgr:mychem.api, kgr:mygene.api, kgr:openfda.apis, kgr:openfda.downloads, kgr:unii.data, kgr:unii.legacy, kgr:unii.list, kgr:unii.search ; schema1:identifier "unii" ; schema1:name "FDA Global Substance Registration System (UNII)" ; doap:repository ; skos:inScheme "clinical", "drug discovery", "pharmacology", "public health" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:fda . kgr:uniprot a schema1:DataSource ; rdfs:label "uniprot" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "UniProt Protein Knowledge Base" ; dcterms:identifier "uniprot" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about , , , , , , , ; schema1:hasPart kgr:aopwiki-rdf.ttl, kgr:babel.compendia, kgr:biobtree.api, kgr:biobtree.graph.human-subgraph, kgr:biogrid.identifiers, kgr:bioregistry.registry.json, kgr:bioregistry.sssom, kgr:cacao.api, kgr:cacao.go-annotations, kgr:cacao.gowiki, kgr:cacao.portal, kgr:cancer-genome-interpreter.clinicalkg.graph, kgr:cardiokg.neo4j, kgr:cellmodelpassports.gene_identifiers, kgr:chembl.map_to_uniprot, kgr:clinicalkg.graph, kgr:date.archive, kgr:dbnsfp.academic, kgr:dbnsfp.commercial, kgr:dbptm.downloads, kgr:dbsno.downloads, kgr:disgenet.data, kgr:disprot.downloads, kgr:drugmechdb.graph, kgr:epsd.download, kgr:genecards.gene.annotations, kgr:genecards.web.interface, kgr:genereviews.genes-uniprot, kgr:goa.ftp, kgr:goa.human, kgr:goa.mapping-files, kgr:goa.mouse, kgr:goa.uniprot, kgr:gp-kg.graph, kgr:gpcrdb.api, kgr:gpcrdb.data, kgr:gpcrdb.portal, kgr:hra.data, kgr:iid.human_annotated_ppis, kgr:iid.mouse_annotated_ppis, kgr:iptmnet.protein, kgr:iptmnet.ptm, kgr:jpost.protein, kgr:jpost.psm, kgr:jpost.rdf, kgr:kg-covid-19.graph, kgr:kg-jensenlab-diseases.edges.kgx, kgr:kg-jensenlab-diseases.edges.trapi, kgr:kg-jensenlab-diseases.nodes.kgx, kgr:kg-microbe.graph.biomedical, kgr:kg-microbe.graph.biomedical-function, kgr:kg-microbe.graph.core, kgr:kg-microbe.graph.function, kgr:kg-microbe.graph.raw, kgr:kg-microbe.graph.uniprot, kgr:kinace.portal, kgr:markerdb.api, kgr:markerdb.proteins.tsv, kgr:medkg.site, kgr:microbiomekg.api, kgr:molepro.api, kgr:molepro.catalog, kgr:molepro.graph.edges, kgr:molepro.graph.nodes, kgr:molepro.trapi, kgr:mygene.api, kgr:ncbigene.gene_refseq_uniprotkb_collab, kgr:neo.model, kgr:neo.obo, kgr:nextprot.api, kgr:nextprot.downloads, kgr:nextprot.portal, kgr:nextprot.sparql, kgr:obo-db-ingest.uniprot.json, kgr:obo-db-ingest.uniprot.obo, kgr:obo-db-ingest.uniprot.owl, kgr:obo-db-ingest.uniprot.ptm.json, kgr:obo-db-ingest.uniprot.ptm.obo, kgr:obo-db-ingest.uniprot.ptm.owl, kgr:obo-db-ingest.uniprot.ptm.sssom.tsv, kgr:obo-db-ingest.uniprot.ptm.tsv, kgr:obo-db-ingest.uniprot.sssom.tsv, kgr:obo-db-ingest.uniprot.tsv, kgr:oma.mapping.uniprot, kgr:oregano.graph, kgr:pathwaycommons.biopax, kgr:pathwaycommons.downloads, kgr:pathwaycommons.gmt, kgr:pathwaycommons.sif, kgr:pathwaycommons.txt, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:pheknowlator.graph, kgr:phosphoelm.dataset, kgr:pombase.genes-products, kgr:pombase.to-uniprot, kgr:preppi.download, kgr:prokn.hgncuniprot.gene.is_protein.protein.edges, kgr:prokn.uniprotkb.protein.has_site.site.edges, kgr:prokn.uniprotkb.protein.has_variant.variant.edges, kgr:proteomehd.data, kgr:proteomehd.uniprot_annotations, kgr:pubchem.substances.asn, kgr:pubchem.substances.sdf, kgr:rdf-portal.graphql, kgr:rdf-portal.sparql.sib, kgr:rtx-kg2.graph.edges, kgr:rtx-kg2.graph.nodes, kgr:rtx-kg2.neo4j, kgr:service-kp.trapi, kgr:spoke-okn.graph, kgr:spoke.graph, kgr:string.cog.links, kgr:string.cog.links.detailed, kgr:string.database, kgr:string.protein.links, kgr:string.protein.links.detailed, kgr:string.protein.links.full, kgr:string.protein.physical.links, kgr:string.protein.physical.links.detailed, kgr:string.protein.physical.links.full, kgr:suppkg.source-data, kgr:swisslipid.enzymes, kgr:swisslipid.lipids2uniprot, kgr:tcrd.api, kgr:tcrd.database_download, kgr:tcrd.documentation, kgr:togows.rest-api, kgr:ttd.uniprot-all, kgr:ubkg.csv, kgr:ubkg.neo4j, kgr:unibiomap.auxs, kgr:unibiomap.links, kgr:unibiomap.pred, kgr:unibiomap.pred.full, kgr:unibiomap.protein_desc, kgr:uniprot.kg-bioportal, kgr:uniprot.swissprot.fasta, kgr:uniprot.swissprot.xml, kgr:uniprot.trembl.fasta, kgr:uniprot.trembl.xml ; schema1:identifier "uniprot" ; schema1:name "uniprot" ; doap:repository ; skos:inScheme "proteomics" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ebi . kgr:uniref a schema1:DataSource ; rdfs:label "UniRef" ; dcterms:created "2025-10-31T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "UniRef (Universal Protein Resource Reference Clusters) provides clustered sets of protein sequences from the UniProt Knowledgebase and selected UniParc records to obtain complete coverage. UniRef100 combines identical sequences and sub-fragments into a single UniRef entry, UniRef90 clusters sequences with 90% sequence identity, and UniRef50 clusters sequences with 50% sequence identity, providing speed and coverage tradeoffs for similarity searches." ; dcterms:identifier "uniref" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:uniref.api, kgr:uniref.portal, kgr:uniref.uniref100.fasta, kgr:uniref.uniref100.xml, kgr:uniref.uniref50.fasta, kgr:uniref.uniref50.xml, kgr:uniref.uniref90.fasta, kgr:uniref.uniref90.xml ; schema1:identifier "uniref" ; schema1:name "UniRef" ; skos:altLabel "UniRef", "UniRef100", "UniRef50", "UniRef90" ; skos:inScheme "proteomics" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ebi . kgr:uo a schema1:Ontology ; rdfs:label "Units of measurement ontology" ; dcterms:created "2025-06-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Metrical units for use in conjunction with PATO" ; dcterms:identifier "uo" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cancer-genome-interpreter.clinicalkg.graph, kgr:clinicalkg.graph, kgr:efo.obo, kgr:efo.owl, kgr:foodkg.build-scripts, kgr:foodkg.sdd-dictionary, kgr:foodkg.usda-sample, kgr:orkg.dump, kgr:ubkg.csv, kgr:ubkg.neo4j, kgr:uo.json, kgr:uo.kg-bioportal, kgr:uo.obo, kgr:uo.owl ; schema1:name "Units of measurement ontology" ; doap:repository ; skos:inScheme "general", "phenotype" ; adms:status "Active" ; foaf:homepage . kgr:upa a schema1:Ontology ; rdfs:label "Unipathway" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A manually curated resource for the representation and annotation of metabolic pathways" ; dcterms:identifier "upa" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:upa.kg-bioportal, kgr:upa.obo, kgr:upa.owl ; schema1:name "Unipathway" ; doap:repository ; skos:inScheme "biological systems", "metabolism", "pathways" ; adms:status "Inactive" ; foaf:homepage . kgr:upheno a schema1:Ontology ; rdfs:label "Unified Phenotype Ontology (uPheno)" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The uPheno ontology integrates multiple phenotype ontologies into a unified cross-species phenotype ontology." ; dcterms:identifier "upheno" ; dcterms:isReferencedBy , , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:sri-reference-kg.graph, kgr:upheno.mp-hp-view.owl, kgr:upheno.owl, kgr:upheno.v2.upheno.owl ; schema1:identifier "upheno" ; schema1:name "Unified Phenotype Ontology (uPheno)" ; doap:repository ; skos:inScheme "phenotype" ; adms:status "Active" ; foaf:homepage . kgr:us-census a schema1:DataSource ; rdfs:label "United States Census Bureau" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The United States Census Bureau is the federal agency responsible for producing demographic, socioeconomic, and geographic data about the people and economy of the United States. Its data products include the decennial Census, the American Community Survey (ACS), economic and business surveys, and TIGER/Line geographic boundary files. These datasets are widely reused for socioeconomic linkage and administrative geography enrichment in downstream knowledge graphs." ; dcterms:identifier "us-census" ; dcterms:license "U.S. Government Work (public domain)" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:cancer-registry-kg.cdi, kgr:geoconnex.graph, kgr:knowwheregraph.graph, kgr:nikg.graph, kgr:ruralkg.graph, kgr:sawgraph.graph, kgr:spatialkg.graph, kgr:sudokn.graph, kgr:us-census.api, kgr:us-census.data ; schema1:name "United States Census Bureau" ; skos:inScheme "general", "information technology", "public health", "social determinants of health" ; adms:status "Active" ; foaf:homepage . kgr:usdm a schema1:DataSource ; rdfs:label "U.S. Drought Monitor" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The U.S. Drought Monitor (USDM) is a weekly map and dataset that classifies the location and severity of drought across the United States, its territories, and tribal areas. It is produced jointly by the National Drought Mitigation Center at the University of Nebraska-Lincoln, the U.S. Department of Agriculture, and the National Oceanic and Atmospheric Administration, drawing on numerous climatic and hydrologic indicators plus local expert input. USDM data and maps serve as an upstream source for KnowWhereGraph." ; dcterms:identifier "usdm" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:knowwheregraph.graph, kgr:usdm.data, kgr:usdm.map ; schema1:name "U.S. Drought Monitor" ; skos:inScheme "agriculture", "climate", "environment", "public health" ; adms:status "Active" ; foaf:homepage . kgr:usgs a schema1:DataSource ; rdfs:label "U.S. Geological Survey (USGS)" ; dcterms:created "2026-07-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The U.S. Geological Survey (USGS) is the science agency of the U.S. Department of the Interior. It produces and publishes data and research across the biological, geological, hydrological, and geographic sciences, and distributes datasets through its data repositories, including the ScienceBase catalog." ; dcterms:identifier "usgs" ; dcterms:license ; dcterms:modified "2026-07-03T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:usgs.data, kgr:usgs.sciencebase, kgr:wildlifekn.graph ; schema1:name "U.S. Geological Survey (USGS)" ; skos:inScheme "environment", "general" ; adms:status "Active" ; foaf:homepage . kgr:usgs-comcat a schema1:DataSource ; rdfs:label "USGS Comprehensive Earthquake Catalog (ComCat)" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Advanced National Seismic System (ANSS) Comprehensive Earthquake Catalog (ComCat) is the U.S. Geological Survey's authoritative catalog of earthquake events. It aggregates seismic event records contributed by ANSS networks and other sources, including event origins (location, depth, and time), magnitudes, and associated phase and product data. ComCat is accessible through a web-based earthquake search interface and a programmatic FDSN-standard event web service, and serves as an upstream source for the KnowWhereGraph." ; dcterms:identifier "usgs-comcat" ; dcterms:license "U.S. federal government public domain" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:knowwheregraph.graph, kgr:usgs-comcat.fdsnws, kgr:usgs-comcat.search ; schema1:name "USGS Comprehensive Earthquake Catalog (ComCat)" ; skos:inScheme "environment", "information technology" ; adms:status "Active" ; foaf:homepage . kgr:usgs-nhd a schema1:DataSource ; rdfs:label "USGS National Hydrography Dataset (NHD)" ; dcterms:created "2026-07-01T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The National Hydrography Dataset (NHD) is the U.S. Geological Survey's authoritative geospatial representation of the surface water features of the United States, including rivers, streams, canals, lakes, ponds, and other waterbodies. The associated NHDPlus products add value with flow direction, network connectivity (NHDFlowline), waterbody features (NHDWaterbody), and catchment attributes. SAWGraph uses NHD and NHDPlus data as a geospatial reference source for modeling surface water features and the flowlines that connect them, supporting spatial context for PFAS observations." ; dcterms:identifier "usgs-nhd" ; dcterms:license "U.S. federal government public domain" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:geoconnex.graph, kgr:hydrologykg.graph, kgr:sawgraph.graph, kgr:uf-okn.graph, kgr:usgs-nhd.landing, kgr:usgs-nhd.nhdplus ; schema1:name "USGS National Hydrography Dataset (NHD)" ; skos:inScheme "environment", "water resources" ; adms:status "Active" ; foaf:homepage . kgr:usgs-nwis a schema1:DataSource ; rdfs:label "USGS National Water Information System (NWIS)" ; dcterms:created "2026-07-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The National Water Information System (NWIS) is the U.S. Geological Survey's principal repository of water resources data for the United States, providing access to surface water, groundwater, and water quality data collected at monitoring sites and stream gages nationwide. NWIS is the authoritative source for USGS streamgage monitoring locations and national aquifer information. Geoconnex draws on NWIS as the source of record for its reference stream gage monitoring locations and USGS National Aquifer reference features." ; dcterms:identifier "usgs-nwis" ; dcterms:license "U.S. federal government public domain" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:geoconnex.graph, kgr:usgs-nwis.landing ; schema1:name "USGS National Water Information System (NWIS)" ; skos:inScheme "environment", "water resources" ; adms:status "Active" ; foaf:homepage . kgr:vario a schema1:Ontology ; rdfs:label "Variation Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Variation Ontology, VariO, is an ontology for standardized, systematic description of effects, consequences and mechanisms of variations." ; dcterms:identifier "vario" ; dcterms:isReferencedBy , , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:vario.kg-bioportal, kgr:vario.obo, kgr:vario.owl ; schema1:name "Variation Ontology" ; skos:inScheme "biological systems", "genetic variation", "genomics" ; adms:status "Orphaned" ; foaf:homepage . kgr:vbo a schema1:Ontology ; rdfs:label "Vertebrate Breed Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Vertebrate Breed Ontology is an ontology created to serve as a single computable resource for vertebrate breed names." ; dcterms:identifier "vbo" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:vbo.json, kgr:vbo.kg-bioportal, kgr:vbo.obo, kgr:vbo.owl, kgr:vbo.vbo-base.json, kgr:vbo.vbo-base.obo, kgr:vbo.vbo-base.owl ; schema1:name "Vertebrate Breed Ontology" ; doap:repository ; skos:inScheme "domestic animals", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:vccf a schema1:Ontology ; rdfs:label "Vasculature Common Coordinate Framework" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Vasculature Common Coordinate Framework (VCCF) is a vasculature-based common coordinate framework that models the human blood vasculature as a branching coordinate system, using arteries, veins, and capillaries to link anatomical structures and the cells they supply or drain across organs. It is a component of the Human Reference Atlas (HRA) and is realized as the HRA-VCCF, an open, computer-readable description of the adult human blood vasculature covering vessels and their branching connections, associated cell types, and biomarkers. The VCCF underpins the \"blood vasculature\" ASCT+B (Anatomical Structures, Cell Types, plus Biomarkers) table and the HRA's VCCF visualization, supporting single-cell mapping and cross-organ spatial queries." ; dcterms:identifier "vccf" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:hra-kg.graph.json, kgr:hra-kg.graph.nq, kgr:hra-kg.graph.nt, kgr:hra-kg.graph.ttl, kgr:hra-kg.graph.xml, kgr:vccf.explorer ; schema1:name "Vasculature Common Coordinate Framework" ; skos:inScheme "anatomy and development", "biomedical" ; adms:status "Active" ; foaf:homepage . kgr:vdjserver a schema1:DataSource ; rdfs:label "VDJServer" ; dcterms:created "2026-07-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "VDJServer is a NIAID-supported, cloud-based analysis portal and public data repository for adaptive immune receptor repertoire (AIRR) sequencing data. It provides tools for processing B-cell and T-cell receptor repertoire sequences and hosts an AIRR Data Commons-compliant repository for sharing immune repertoire datasets. VDJServer is one of the NIAID-sponsored repositories whose dataset metadata is harvested and indexed by the NIAID Data Ecosystem Discovery Portal." ; dcterms:identifier "vdjserver" ; dcterms:modified "2026-07-02T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:nde.graph, kgr:vdjserver.portal ; schema1:name "VDJServer" ; skos:inScheme "biomedical", "genomics", "immunology" ; adms:status "Active" ; foaf:homepage . kgr:vectology a schema1:Resource ; rdfs:label "Vectology" ; dcterms:created "2025-09-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Vectology is a software platform and API for exploring relationships among biomedical variables using sentence embedding models derived from biomedical literature. It converts brief variable descriptions into vector representations enabling similarity search, recommendation, and relational insight without manual ontology annotation." ; dcterms:identifier "vectology" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:epigraphdb.graph, kgr:vectology.api, kgr:vectology.docs ; schema1:name "Vectology" ; doap:repository ; skos:inScheme "biomedical", "genomics", "information technology", "machine learning" ; adms:status "Inactive" ; foaf:homepage . kgr:vhog a schema1:Ontology ; rdfs:label "Vertebrate Homologous Ontology Group Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Description unavailable." ; dcterms:identifier "vhog" ; dcterms:modified "2026-09-08T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:vhog.kg-bioportal, kgr:vhog.owl ; schema1:name "Vertebrate Homologous Ontology Group Ontology" ; skos:inScheme "anatomy and development" ; adms:status "Inactive" ; foaf:homepage . kgr:vista a schema1:DataSource ; rdfs:label "VISTA Enhancer Browser" ; dcterms:created "2026-06-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The VISTA Enhancer Browser is a database of experimentally validated human and mouse noncoding fragments with gene enhancer activity as assessed in transgenic mice. Elements are tested in vivo and annotated with their tissue-specific enhancer activity patterns." ; dcterms:identifier "vista" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:genecards.web.interface, kgr:vista.data, kgr:vista.site ; schema1:name "VISTA Enhancer Browser" ; skos:inScheme "anatomy and development", "gene regulation", "genomics" ; adms:status "Active" ; foaf:homepage . kgr:vo a schema1:Ontology ; rdfs:label "Vaccine Ontology" ; dcterms:created "2025-08-20T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "VO is a biomedical ontology in the domain of vaccine and vaccination." ; dcterms:identifier "vo" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:pheknowlator.graph, kgr:rna-kg.kg.edges, kgr:rna-kg.kg.neo4j, kgr:rna-kg.kg.nodes, kgr:vo.kg-bioportal, kgr:vo.owl ; schema1:name "Vaccine Ontology" ; doap:repository ; skos:inScheme "biomedical", "immunology", "vaccines" ; adms:status "Active" ; foaf:homepage . kgr:vsao a schema1:Ontology ; rdfs:label "Vertebrate Skeletal Anatomy Ontology-" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Vertebrate skeletal anatomy ontology." ; dcterms:identifier "vsao" ; dcterms:modified "2026-09-08T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:vsao.kg-bioportal, kgr:vsao.owl ; schema1:name "Vertebrate Skeletal Anatomy Ontology-" ; skos:inScheme "anatomy and development" ; adms:status "Inactive" ; foaf:homepage . kgr:vt a schema1:Ontology ; rdfs:label "Vertebrate trait ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "An ontology of traits covering vertebrates" ; dcterms:identifier "vt" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:vt.kg-bioportal, kgr:vt.owl ; schema1:name "Vertebrate trait ontology" ; doap:repository ; skos:inScheme "phenotype" ; adms:status "Active" ; foaf:homepage . kgr:vto a schema1:Ontology ; rdfs:label "Vertebrate Taxonomy Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Comprehensive hierarchy of extinct and extant vertebrate taxa." ; dcterms:identifier "vto" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:vto.obo, kgr:vto.owl ; schema1:name "Vertebrate Taxonomy Ontology" ; doap:repository ; skos:inScheme "organisms", "taxonomy" ; adms:status "Active" ; foaf:homepage . kgr:water-quality-portal a schema1:DataSource ; rdfs:label "Water Quality Portal (WQP)" ; dcterms:created "2026-07-01T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Water Quality Portal (WQP) is a cooperative water quality data service sponsored by the US Geological Survey, the US Environmental Protection Agency, and the National Water Quality Monitoring Council. It integrates publicly available water quality monitoring data from hundreds of federal, state, tribal, and local organizations, exposing monitoring locations, sampling activities, and characteristic results (including per- and polyfluoroalkyl substance, PFAS, measurements) through a standardized web service. SAWGraph uses WQP water quality monitoring results as a primary source for PFAS occurrence in surface water and groundwater." ; dcterms:identifier "water-quality-portal" ; dcterms:license "US federal government public domain" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:sawgraph.graph, kgr:water-quality-portal.landing, kgr:water-quality-portal.webservices ; schema1:name "Water Quality Portal (WQP)" ; skos:inScheme "chemistry and biochemistry", "environment", "public health", "water resources" ; adms:status "Active" ; foaf:homepage . kgr:wbbt a schema1:Ontology ; rdfs:label "C. elegans Gross Anatomy Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A structured controlled vocabulary of the anatomy of Caenorhabditis elegans." ; dcterms:identifier "wbbt" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:sri-reference-kg.graph, kgr:wbbt.obo, kgr:wbbt.owl ; schema1:identifier "wbbt" ; schema1:name "C. elegans Gross Anatomy Ontology" ; doap:repository ; skos:inScheme "anatomy and development" ; adms:status "Active" ; foaf:homepage . kgr:wbls a schema1:Ontology ; rdfs:label "C. elegans development ontology" ; dcterms:created "2025-06-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A structured controlled vocabulary of the development of Caenorhabditis elegans." ; dcterms:identifier "wbls" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:efo.obo, kgr:efo.owl, kgr:sri-reference-kg.graph, kgr:wbls.obo, kgr:wbls.owl ; schema1:identifier "wbls" ; schema1:name "C. elegans development ontology" ; doap:repository ; skos:inScheme "anatomy and development" ; adms:status "Active" ; foaf:homepage . kgr:wbphenotype a schema1:Ontology ; rdfs:label "C. elegans phenotype" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A structured controlled vocabulary of Caenorhabditis elegans phenotypes" ; dcterms:identifier "wbphenotype" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:sri-reference-kg.graph, kgr:wbphenotype.obo, kgr:wbphenotype.owl, kgr:wbphenotype.wbphenotype-base.owl ; schema1:identifier "wbphenotype" ; schema1:name "C. elegans phenotype" ; doap:repository ; skos:inScheme "phenotype" ; adms:status "Active" ; foaf:homepage . kgr:web-of-science a schema1:DataSource ; rdfs:label "Web of Science" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Web of Science Core Collection is a multidisciplinary citation database from Clarivate that indexes peer-reviewed journals, conference proceedings, books, and cited references across sciences, social sciences, arts, and humanities." ; dcterms:identifier "web-of-science" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:kg-fm.abstract_text, kgr:kg-fm.graph, kgr:kg-fm.json_extractions, kgr:myaura.graph, kgr:web-of-science.core_collection_docs, kgr:web-of-science.platform ; schema1:name "Web of Science" ; skos:altLabel "WOSCC", "Web of Science Core Collection", "WoS" ; skos:inScheme "general", "information technology", "literature", "scholarly communication" ; adms:status "Active" ; foaf:homepage . kgr:who-ictrp a schema1:Aggregator ; rdfs:label "WHO International Clinical Trials Registry Platform" ; dcterms:created "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The WHO International Clinical Trials Registry Platform (ICTRP) Search Portal provides a single point of access to clinical trial registration records supplied by the registries of the WHO Registry Network, including the WHO primary registries and ClinicalTrials.gov. Records follow the WHO Trial Registration Data Set, are provided in English, link back to the original registry records, and are bridged (grouped) when several registries hold records for the same trial. Data sets are imported weekly or every four weeks depending on the data provider. The ICTRP is not itself a trial registry." ; dcterms:identifier "who-ictrp" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ecrin-mdr.api, kgr:ecrin-mdr.portal, kgr:who-ictrp.data-providers, kgr:who-ictrp.docs, kgr:who-ictrp.portal, kgr:who-ictrp.primary-registries, kgr:who-ictrp.search-export, kgr:who-ictrp.web-service, kgr:who-ictrp.who-data-set ; schema1:name "WHO International Clinical Trials Registry Platform" ; skos:altLabel "ICTRP", "ICTRP Search Portal", "WHO ICTRP" ; skos:inScheme "clinical", "clinical trials" ; adms:status "Active" ; foaf:homepage . kgr:wikidata a schema1:KnowledgeGraph ; rdfs:label "Wikidata" ; dcterms:created "2025-10-31T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Wikidata is a free and open knowledge base that can be read and edited by both humans and machines" ; dcterms:identifier "wikidata" ; dcterms:license ; dcterms:modified "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:bioregistry.registry.json, kgr:bioregistry.sssom, kgr:dbpedia.latest-core, kgr:freebase.wikidata-mappings, kgr:identifier-mappings.graph, kgr:identifier-mappings.sparql, kgr:identifier-mappings.tpf, kgr:kg-enp.graph, kgr:knowwheregraph.graph, kgr:onco.all_json, kgr:open-english-wordnet.json-plus, kgr:open-english-wordnet.lmf-plus, kgr:open-english-wordnet.rdf-plus, kgr:open-english-wordnet.wndb-plus, kgr:orkg.dump, kgr:pubchem.substances.asn, kgr:pubchem.substances.sdf, kgr:raras.encyclopedia, kgr:raras.portal, kgr:wikidata.api, kgr:wikidata.dumps.incremental, kgr:wikidata.dumps.json, kgr:wikidata.dumps.lexemes.json, kgr:wikidata.dumps.lexemes.nt, kgr:wikidata.dumps.lexemes.ttl, kgr:wikidata.dumps.rdf.full.nt, kgr:wikidata.dumps.rdf.full.ttl, kgr:wikidata.dumps.rdf.truthy.nt, kgr:wikidata.dumps.xml, kgr:wikidata.entity.api, kgr:wikidata.portal, kgr:wikidata.query.editor, kgr:wikidata.sparql, kgr:wikidata.tpf ; schema1:identifier "wikidata" ; schema1:name "Wikidata" ; doap:repository ; skos:altLabel "Wikidata", "Wikidata Knowledge Base" ; skos:inScheme "general" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:wikimedia . kgr:wikipathways a schema1:DataSource ; rdfs:label "WikiPathways" ; dcterms:created "2025-06-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "WikiPathways is an open, collaborative platform dedicated to the curation of biological pathways. The database contains 1,913 human-curated pathways across 27 species with 36,334 gene products and 7,052 metabolites, supporting multiple data formats (GPML, GMT, RDF) and programmatic access via SPARQL endpoints and web APIs. Community-driven curation with version control and CI/CD infrastructure enables rapid pathway annotation and knowledge sharing in an open science framework." ; dcterms:identifier "wikipathways" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-16T00:00:00+00:00"^^xsd:dateTime ; schema1:about , ; schema1:hasPart kgr:alzkb.browser, kgr:alzkb.data, kgr:enrichr-kg.graph, kgr:genecards.pathway.data, kgr:genecards.web.interface, kgr:harmonizome.downloads, kgr:harmonizome.kg-neo4j, kgr:hetionet.data.edges, kgr:hetionet.data.json, kgr:hetionet.data.neo4j, kgr:hetionet.data.nodes, kgr:hetionet.hetnetpy, kgr:hetionet.neo4j, kgr:hetionet.search, kgr:indra.cogex.code, kgr:msigdb.downloads.human, kgr:msigdb.downloads.mouse, kgr:mygene.api, kgr:obo-db-ingest.wikipathways.json, kgr:obo-db-ingest.wikipathways.obo, kgr:obo-db-ingest.wikipathways.owl, kgr:obo-db-ingest.wikipathways.tsv, kgr:pharmebinet.graphml, kgr:pharmebinet.json, kgr:pharmebinet.neo4j, kgr:pharmebinet.neo4j.dump, kgr:pharmebinet.tsv, kgr:pubchem.substances.asn, kgr:pubchem.substances.sdf, kgr:rampdb.database, kgr:rdbridge.graph, kgr:rna-kg.kg.edges, kgr:rna-kg.kg.neo4j, kgr:rna-kg.kg.nodes, kgr:spoke-okn.graph, kgr:spoke.graph, kgr:string.cog.links, kgr:string.cog.links.detailed, kgr:string.database, kgr:string.protein.links, kgr:string.protein.links.detailed, kgr:string.protein.links.full, kgr:string.protein.physical.links, kgr:string.protein.physical.links.detailed, kgr:string.protein.physical.links.full, kgr:ttd.wiki-pathways, kgr:ubkg.csv, kgr:ubkg.neo4j, kgr:wikipathways.gmt, kgr:wikipathways.gpml, kgr:wikipathways.kg-bioportal, kgr:wikipathways.rdf, kgr:wikipathways.sparql, kgr:wikipathways.web ; schema1:identifier "wikipathways" ; schema1:name "WikiPathways" ; doap:repository ; skos:inScheme "biomedical", "genomics", "pathways" ; skos:notation "FAIRsharing.1x53qk" ; adms:status "Active" ; foaf:homepage . kgr:wikipedia a schema1:DataSource ; rdfs:label "Wikipedia" ; dcterms:created "2026-03-11T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Wikipedia is a free, collaboratively edited multilingual encyclopedia published by the Wikimedia movement. Its article content is widely reused as an open reference source and serves as a primary upstream source for derivative resources such as DBpedia. Wikipedia content is accessible through the web portal, public APIs, and Wikimedia dump infrastructure." ; dcterms:identifier "wikipedia" ; dcterms:license ; dcterms:modified "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:dbpedia.latest-core, kgr:drugmechdb.graph, kgr:foodb.data.csv, kgr:foodb.data.json, kgr:foodb.data.mysql, kgr:foodb.data.xml, kgr:foodb.web, kgr:genecards.web.interface, kgr:mygene.api, kgr:wikipedia.api, kgr:wikipedia.dumps.enwiki.current, kgr:wikipedia.dumps.enwiki.history, kgr:wikipedia.portal, kgr:wikipedia.rest ; schema1:name "Wikipedia" ; skos:altLabel "English Wikipedia" ; skos:inScheme "general" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:wikimedia . kgr:wikispecies a schema1:DataSource ; rdfs:label "Wikispecies" ; dcterms:created "2026-06-12T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Wikispecies is a free, collaboratively edited Wikimedia species directory containing taxonomic information, nomenclature, references, and related links for organisms." ; dcterms:identifier "wikispecies" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:foodb.data.csv, kgr:foodb.data.json, kgr:foodb.data.mysql, kgr:foodb.data.xml, kgr:foodb.web, kgr:wikispecies.api, kgr:wikispecies.dumps.latest, kgr:wikispecies.portal ; schema1:name "Wikispecies" ; skos:inScheme "biodiversity", "organisms", "taxonomy" ; adms:status "Active" ; foaf:homepage . kgr:wildlifekn a schema1:KnowledgeGraph ; rdfs:label "Wildlife-KN" ; dcterms:created "2025-12-08T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "This project seeks to create a comprehensive, integrative knowledge network for the management of wildlife in the context of climate change" ; dcterms:identifier "wildlifekn" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:wildlifekn.graph, kgr:wildlifekn.portal, kgr:wildlifekn.sparql, kgr:wildlifekn.tpf ; schema1:name "Wildlife-KN" ; skos:inScheme "biodiversity", "climate", "environment", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:wipo-tkp a schema1:DataSource ; rdfs:label "WIPO Traditional Knowledge Resources" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The World Intellectual Property Organization (WIPO) maintains a portal and associated resources on traditional knowledge (TK), traditional cultural expressions, and genetic resources, including documentation related to traditional and herbal medicine knowledge held by indigenous and local communities. WIPO's TK pages provide policy materials, guidance, and links to databases and registries of traditional knowledge, such as documentation of traditional medicinal systems that intersect with pharmacology and natural product research. These resources have been cited as an upstream reference for PharmDB, a database of traditional Korean medicine. The portal serves as a reference hub rather than a single downloadable dataset." ; dcterms:identifier "wipo-tkp" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:pharmdb.graph, kgr:wipo-tkp.portal ; schema1:name "WIPO Traditional Knowledge Resources" ; skos:inScheme "chemistry and biochemistry", "literature", "natural products", "pharmacology", "public health" ; adms:status "Active" ; foaf:homepage . kgr:wordnet a schema1:DataSource ; rdfs:label "WordNet" ; dcterms:created "2026-10-04T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "WordNet is Princeton University's lexical database of English. Nouns, verbs, adjectives and adverbs are grouped into synsets (sets of cognitive synonyms), each expressing a distinct concept, and synsets are linked by conceptual-semantic and lexical relations such as hypernymy, meronymy and antonymy. It is widely used in natural language processing and as a source for ontologies. Princeton states that WordNet is no longer developed; the last release is 3.1, and the community-maintained Open English WordNet continues the work." ; dcterms:hasVersion "3.1" ; dcterms:identifier "wordnet" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:open-english-wordnet.json, kgr:open-english-wordnet.json-plus, kgr:open-english-wordnet.lmf, kgr:open-english-wordnet.lmf-plus, kgr:open-english-wordnet.rdf, kgr:open-english-wordnet.rdf-plus, kgr:open-english-wordnet.wndb, kgr:open-english-wordnet.wndb-plus, kgr:proton.ontology, kgr:wordnet.dict-3.1, kgr:wordnet.download-page, kgr:wordnet.release-3.0, kgr:wordnet.search ; schema1:name "WordNet" ; skos:altLabel "PWN", "Princeton WordNet" ; skos:inScheme "general", "literature", "natural language processing" ; adms:status "Inactive" ; foaf:homepage . kgr:worldclim a schema1:DataSource ; rdfs:label "WorldClim" ; dcterms:created "2026-07-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "WorldClim is a set of global climate layers (gridded climate data) at spatial resolutions down to about 1 km2, providing historical monthly, bioclimatic, and future (downscaled climate model) surfaces for temperature, precipitation, and related variables. It is widely used for species distribution modeling and other ecological and environmental applications." ; dcterms:identifier "worldclim" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:wildlifekn.graph, kgr:worldclim.download, kgr:worldclim.portal ; schema1:name "WorldClim" ; skos:inScheme "climate", "environment" ; adms:status "Active" ; foaf:homepage . kgr:wormbase a schema1:DataSource ; rdfs:label "WormBase" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "WormBase is an online biological database providing comprehensive genomic and biological information about C. elegans and related nematodes, including annotated genomes, gene structures, functional annotations, genetic maps, gene expression data, protein interactions, RNAi phenotypes, and curated literature." ; dcterms:identifier "wormbase" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:babel.compendia, kgr:genecards.web.interface, kgr:neo.model, kgr:neo.obo, kgr:sri-reference-kg.graph, kgr:string.cog.links, kgr:string.cog.links.detailed, kgr:string.database, kgr:string.protein.links, kgr:string.protein.links.detailed, kgr:string.protein.links.full, kgr:string.protein.physical.links, kgr:string.protein.physical.links.detailed, kgr:string.protein.physical.links.full, kgr:wormbase.api, kgr:wormbase.ftp, kgr:wormbase.gbrowse, kgr:wormbase.parasite, kgr:wormbase.portal, kgr:wormbase.textpresso, kgr:wormbase.wormmine ; schema1:identifier "wormbase" ; schema1:name "WormBase" ; doap:repository ; skos:altLabel "WB" ; skos:inScheme "anatomy and development", "genomics", "model organisms", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:xao a schema1:Ontology ; rdfs:label "Xenopus Anatomy Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "XAO represents the anatomy and development of the African frogs Xenopus laevis and tropicalis." ; dcterms:identifier "xao" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:sri-reference-kg.graph, kgr:xao.kg-bioportal, kgr:xao.obo, kgr:xao.owl ; schema1:identifier "xao" ; schema1:name "Xenopus Anatomy Ontology" ; doap:repository ; skos:inScheme "anatomy and development" ; adms:status "Active" ; foaf:homepage . kgr:xco a schema1:Ontology ; rdfs:label "Experimental condition ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Conditions under which physiological and morphological measurements are made both in the clinic and in studies involving humans or model organisms." ; dcterms:identifier "xco" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:xco.kg-bioportal, kgr:xco.obo, kgr:xco.owl ; schema1:name "Experimental condition ontology" ; doap:repository ; skos:inScheme "biomedical", "phenotype" ; adms:status "Active" ; foaf:homepage . kgr:xenbase a schema1:DataSource ; rdfs:label "Xenbase" ; dcterms:created "2025-08-13T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Xenbase is the Xenopus model organism knowledgebase, a web-accessible resource that integrates all the diverse biological, genomic, genotype and phenotype data available from Xenopus research. It provides comprehensive data on Xenopus laevis and Xenopus tropicalis, including genome assemblies, gene expression data, anatomy information, phenotypes, and developmental biology resources." ; dcterms:identifier "xenbase" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:biogrid.identifiers, kgr:kg-alzheimers.graph, kgr:kg-monarch.graph, kgr:kg-monarch.graph.duckdb, kgr:kg-monarch.graph.jsonl, kgr:kg-monarch.graph.jsonl.edges, kgr:kg-monarch.graph.jsonl.nodes, kgr:kg-monarch.graph.neo4j, kgr:kg-monarch.graph.neo4j.edges, kgr:kg-monarch.graph.neo4j.nodes, kgr:kg-monarch.graph.rdf, kgr:neo.model, kgr:neo.obo, kgr:sri-reference-kg.graph, kgr:xenbase.apis, kgr:xenbase.blast, kgr:xenbase.expression-data, kgr:xenbase.ftp-downloads, kgr:xenbase.genomes, kgr:xenbase.jbrowse-laevis, kgr:xenbase.jbrowse-tropicalis, kgr:xenbase.phenotype-data, kgr:xenbase.web-portal, kgr:xenbase.wiki ; schema1:identifier "xenbase" ; schema1:name "Xenbase" ; doap:repository ; skos:inScheme "anatomy and development", "biomedical", "genomics", "model organisms", "organisms", "phenotype" ; adms:status "Active" ; foaf:homepage . kgr:xlmod a schema1:Ontology ; rdfs:label "HUPO-PSI cross-linking and derivatization reagents controlled vocabulary" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry." ; dcterms:identifier "xlmod" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:xlmod.kg-bioportal, kgr:xlmod.obo, kgr:xlmod.owl ; schema1:name "HUPO-PSI cross-linking and derivatization reagents controlled vocabulary" ; doap:repository ; skos:inScheme "chemistry and biochemistry", "proteomics" ; adms:status "Active" ; foaf:homepage . kgr:xpo a schema1:Ontology ; rdfs:label "Xenopus Phenotype Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevis and tropicalis." ; dcterms:identifier "xpo" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:sri-reference-kg.graph, kgr:xpo.kg-bioportal, kgr:xpo.obo, kgr:xpo.owl ; schema1:identifier "xpo" ; schema1:name "Xenopus Phenotype Ontology" ; doap:repository ; skos:inScheme "phenotype" ; adms:status "Active" ; foaf:homepage . kgr:yoda a schema1:DataSource ; rdfs:label "The YODA Project" ; dcterms:created "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Yale University Open Data Access (YODA) Project is an independent intermediary at Yale that reviews requests from researchers for access to individual participant-level clinical trial data and clinical study reports held by industry and academic Data Partners, including Johnson & Johnson (Janssen and J&J MedTech), Kenvue, SI-BONE and Queen Mary University of London, with Medtronic as an earlier partner. Data Partners transfer full jurisdiction over access decisions to the YODA Project. Its searchable catalog listed 513 trials as available when checked on 2026-10-05. Approved requestors sign a Data Partner-specific data use agreement and analyze data on a secure data sharing platform or receive them through Yale Secure File Transfer." ; dcterms:identifier "yoda" ; dcterms:isReferencedBy , ; dcterms:license ; dcterms:modified "2026-10-05T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ecrin-mdr.api, kgr:ecrin-mdr.portal, kgr:yoda.approved-requests, kgr:yoda.data-release-procedures, kgr:yoda.data-use-agreement, kgr:yoda.metrics, kgr:yoda.portal, kgr:yoda.request-process, kgr:yoda.trial-catalog ; schema1:name "The YODA Project" ; skos:altLabel "YODA Project", "Yale Open Data Access Project", "Yale University Open Data Access Project" ; skos:inScheme "biomedical", "clinical", "clinical trials" ; adms:status "Active" ; foaf:homepage . kgr:ypo a schema1:Ontology ; rdfs:label "Yeast phenotypes" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Description unavailable." ; dcterms:identifier "ypo" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:name "Yeast phenotypes" ; skos:inScheme "phenotype" ; adms:status "Inactive" ; foaf:homepage . kgr:zea a schema1:Ontology ; rdfs:label "Maize gross anatomy" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Description unavailable." ; dcterms:identifier "zea" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:zea.kg-bioportal ; schema1:name "Maize gross anatomy" ; skos:inScheme "anatomy and development", "organisms", "plants" ; adms:status "Inactive" ; foaf:homepage . kgr:zeco a schema1:Ontology ; rdfs:label "Zebrafish Experimental Conditions Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Experimental conditions applied to zebrafish, developed to facilitate experiment condition annotation at ZFIN" ; dcterms:identifier "zeco" ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:zeco.json, kgr:zeco.kg-bioportal, kgr:zeco.obo, kgr:zeco.owl ; schema1:name "Zebrafish Experimental Conditions Ontology" ; doap:repository ; skos:inScheme "environment" ; adms:status "Active" ; foaf:homepage . kgr:zfa a schema1:Ontology ; rdfs:label "Zebrafish anatomy and development ontology" ; dcterms:created "2025-06-25T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "A structured controlled vocabulary of the anatomy and development of the Zebrafish" ; dcterms:identifier "zfa" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:efo.obo, kgr:efo.owl, kgr:sri-reference-kg.graph, kgr:zfa.kg-bioportal, kgr:zfa.obo, kgr:zfa.owl ; schema1:identifier "zfa" ; schema1:name "Zebrafish anatomy and development ontology" ; doap:repository ; skos:inScheme "anatomy and development" ; adms:status "Active" ; foaf:homepage . kgr:zfin a schema1:DataSource ; rdfs:label "ZFIN" ; dcterms:created "2025-03-09T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Zebrafish Information Network, including the Zebrafish Anatomical Ontology" ; dcterms:identifier "zfin" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:babel.compendia, kgr:biogrid.identifiers, kgr:dbnsfp.academic, kgr:dbnsfp.commercial, kgr:genecards.model.organisms, kgr:kg-alzheimers.graph, kgr:kg-monarch.graph, kgr:kg-monarch.graph.duckdb, kgr:kg-monarch.graph.jsonl, kgr:kg-monarch.graph.jsonl.edges, kgr:kg-monarch.graph.jsonl.nodes, kgr:kg-monarch.graph.neo4j, kgr:kg-monarch.graph.neo4j.edges, kgr:kg-monarch.graph.neo4j.nodes, kgr:kg-monarch.graph.rdf, kgr:neo.model, kgr:neo.obo, kgr:obo-db-ingest.zfin.json, kgr:obo-db-ingest.zfin.obo, kgr:obo-db-ingest.zfin.owl, kgr:obo-db-ingest.zfin.sssom.tsv, kgr:obo-db-ingest.zfin.tsv, kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db, kgr:sri-reference-kg.graph, kgr:zfin.downloads, kgr:zfin.gene-to-phenotype, kgr:zfin.gene-to-publication, kgr:zfin.zfa, kgr:zirc.fish-catalog ; schema1:identifier "zfin" ; schema1:name "ZFIN" ; doap:repository ; skos:inScheme "anatomy and development", "genomics", "model organisms", "organisms" ; adms:status "Active" ; foaf:homepage . kgr:zfs a schema1:Ontology ; rdfs:label "Zebrafish developmental stages ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Developmental stages of the Zebrafish" ; dcterms:identifier "zfs" ; dcterms:license ; dcterms:modified "2026-08-06T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:sri-reference-kg.graph, kgr:zfs.kg-bioportal, kgr:zfs.obo, kgr:zfs.owl ; schema1:identifier "zfs" ; schema1:name "Zebrafish developmental stages ontology" ; doap:repository ; skos:inScheme "anatomy and development" ; adms:status "Active" ; foaf:homepage . kgr:zirc a schema1:DataSource ; rdfs:label "Zebrafish International Resource Center" ; dcterms:created "2026-10-03T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Zebrafish International Resource Center (ZIRC) is a central repository for wild-type, mutant and transgenic strains of zebrafish (Danio rerio), maintained as live stocks or cryopreserved sperm and distributed as live adults or embryos. ZIRC also distributes antibodies, ESTs/cDNAs and gene probes, and provides health services including diagnostic pathology for zebrafish and other small laboratory fish. It is housed at the University of Oregon and is a sister organization to ZFIN, whose allele and feature pages list ZIRC as a source when a line is available there." ; dcterms:identifier "zirc" ; dcterms:isReferencedBy , , ; dcterms:license ; dcterms:modified "2026-10-03T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:zirc.antibody-catalog, kgr:zirc.est-catalog, kgr:zirc.fish-catalog ; schema1:name "Zebrafish International Resource Center" ; skos:altLabel "ZIRC" ; skos:inScheme "genetic variation", "genomics", "model organisms", "organisms", "phenotype" ; adms:status "Active" ; foaf:homepage . kgr:zp a schema1:Ontology ; rdfs:label "Zebrafish Phenotype Ontology" ; dcterms:created "2025-09-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Zebrafish Phenotype Ontology formally defines all phenotypes of the Zebrafish model organism." ; dcterms:identifier "zp" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:sri-reference-kg.graph, kgr:zp.obo, kgr:zp.owl ; schema1:identifier "zp" ; schema1:name "Zebrafish Phenotype Ontology" ; doap:repository ; skos:inScheme "phenotype" ; adms:status "Active" ; foaf:homepage . kgr:zwd a schema1:DataSource ; rdfs:label "Zasha Weinberg Data" ; dcterms:created "2025-10-29T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Zasha Weinberg Data repository is a collection of RNA sequence and structure data, including information about regulatory RNA elements, riboswitches, and non-coding RNAs. This data source contributes to the RNAcentral aggregator and focuses on structured RNA data from computational and comparative genomics analyses." ; dcterms:identifier "zwd" ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:rnacentral.api, kgr:rnacentral.ftp, kgr:rnacentral.portal, kgr:rnacentral.public-db, kgr:zwd.alignments ; schema1:name "Zasha Weinberg Data" ; skos:inScheme "genomics", "non-coding RNA" ; adms:status "Active" ; foaf:homepage . kgr:1000genomes.data-portal a schema1:GraphicalInterface ; rdfs:label "IGSR Data Portal" ; dcterms:description "Interactive data portal to browse IGSR/1000 Genomes data by sample, population, technology, data type, and collection" ; schema1:url . kgr:1000genomes.ftp a schema1:Product ; rdfs:label "IGSR FTP Site" ; dcterms:description "Primary FTP site hosting IGSR and 1000 Genomes Project data collections and releases" ; schema1:url . kgr:1000genomes.globus-docs a schema1:DocumentationProduct ; rdfs:label "Globus Access Instructions" ; dcterms:description "Instructions for accessing IGSR data via Globus or Aspera (recommended for bulk transfers)" ; schema1:url . kgr:1000genomes.ncbi-mirror a schema1:Product ; rdfs:label "NCBI Mirror" ; dcterms:description "Mirror of original 1000 Genomes Project data at NCBI" ; schema1:url . kgr:1000genomes.portal a schema1:GraphicalInterface ; rdfs:label "IGSR Portal" ; dcterms:description "Main IGSR website with links to data portal, help, and announcements" ; schema1:url . kgr:4dn.chromatin_tracing a schema1:Product ; rdfs:label "4DN Chromatin Tracing Datasets" ; dcterms:description "A specialized collection of chromatin tracing datasets that provide insights into the 3D organization of chromatin in the nucleus." ; schema1:url . kgr:4dn.hic a schema1:Product ; rdfs:label "4DN Hi-C Datasets" ; dcterms:description "A comprehensive collection of Hi-C datasets generated by the 4DN Network and other reference datasets, available for search, visualization, and download." ; schema1:url . kgr:4dn.higlass a schema1:GraphicalInterface ; rdfs:label "HiGlass" ; dcterms:description "A web-based visualization tool for exploring and comparing genomic data, particularly suited for Hi-C and other 4DN datasets." ; schema1:url . kgr:4dn.jupyterhub a schema1:ProcessProduct ; rdfs:label "4DN JupyterHub" ; dcterms:description "A cloud-based Jupyter environment for analyzing 4DN data without downloading it, including example notebooks for data exploration." ; schema1:url . kgr:4dn.micrometa a schema1:ProcessProduct ; rdfs:label "Micro Meta App" ; dcterms:description "A tool for entering and accessing microscope metadata with standardized formats." ; schema1:url . kgr:4dn.microscopy a schema1:Product ; rdfs:label "4DN Microscopy Datasets" ; dcterms:description "A collection of microscopy datasets, including super-resolution microscopy and chromatin tracing data, for visualizing nuclear organization." ; schema1:url . kgr:5srrnadb.downloads.archaea.sequences a schema1:Product ; rdfs:label "Archaea Sequences FASTA" ; dcterms:description "Archaea 5S rRNA sequences (non-structural alignment) in FASTA format" ; schema1:url . kgr:5srrnadb.downloads.archaea.structural a schema1:Product ; rdfs:label "Archaea Structural Alignment FASTA" ; dcterms:description "Archaea 5S rRNA structural alignment (FASTA with secondary structure annotation)" ; schema1:url . kgr:5srrnadb.downloads.bacteria.sequences a schema1:Product ; rdfs:label "Bacteria Sequences FASTA" ; dcterms:description "Bacteria 5S rRNA sequences (non-structural alignment) in FASTA format" ; schema1:url . kgr:5srrnadb.downloads.bacteria.structural a schema1:Product ; rdfs:label "Bacteria Structural Alignment FASTA" ; dcterms:description "Bacteria 5S rRNA structural alignment (FASTA with secondary structure annotation)" ; schema1:url . kgr:5srrnadb.downloads.eukaryota.sequences a schema1:Product ; rdfs:label "Eukaryota Sequences FASTA" ; dcterms:description "Eukaryota 5S rRNA sequences (non-structural alignment) in FASTA format" ; schema1:url . kgr:5srrnadb.downloads.eukaryota.structural a schema1:Product ; rdfs:label "Eukaryota Structural Alignment FASTA" ; dcterms:description "Eukaryota 5S rRNA structural alignment (FASTA with secondary structure annotation)" ; schema1:url . kgr:5srrnadb.downloads.mitochondria.sequences a schema1:Product ; rdfs:label "Mitochondria Sequences FASTA" ; dcterms:description "Mitochondria 5S rRNA sequences (non-structural alignment) in FASTA format" ; schema1:url . kgr:5srrnadb.downloads.mitochondria.structural a schema1:Product ; rdfs:label "Mitochondria Structural Alignment FASTA" ; dcterms:description "Mitochondria 5S rRNA structural alignment (FASTA with secondary structure annotation)" ; schema1:url . kgr:5srrnadb.downloads.plastids.sequences a schema1:Product ; rdfs:label "Plastids Sequences FASTA" ; dcterms:description "Plastids 5S rRNA sequences (non-structural alignment) in FASTA format" ; schema1:url . kgr:5srrnadb.downloads.plastids.structural a schema1:Product ; rdfs:label "Plastids Structural Alignment FASTA" ; dcterms:description "Plastids 5S rRNA structural alignment (FASTA with secondary structure annotation)" ; schema1:url . kgr:5srrnadb.portal a schema1:GraphicalInterface ; rdfs:label "5SRNAdb Portal" ; dcterms:description "Web portal with search, taxonomic browser, interactive alignments, and secondary structure visualizations" ; schema1:url . kgr:UNESCO-IOC a "Organization" ; rdfs:label "UNESCO Intergovernmental Oceanographic Commission (IOC)" . kgr:aact.dictionary a schema1:DocumentationProduct ; rdfs:label "AACT Data Dictionary" ; dcterms:description "Data dictionary with detailed information about all AACT data elements and their relationship to ClinicalTrials.gov definitions" ; schema1:url . kgr:aact.playground a schema1:GraphicalInterface ; rdfs:label "AACT Playground" ; dcterms:description "Web-based SQL query playground for running queries on AACT data directly from the browser" ; schema1:url . kgr:aact.schema a schema1:DocumentationProduct ; rdfs:label "AACT Database Schema" ; dcterms:description "Complete database schema documentation showing table structure and relationships" ; schema1:url . kgr:aao.owl a schema1:OntologyProduct ; rdfs:label "Amphibian gross anatomy OWL edition" ; dcterms:description "Canonical OWL edition of the Amphibian Anatomy Ontology distributed via OBO PURL." ; schema1:url . kgr:aberowl.code a schema1:ProcessProduct ; rdfs:label "Aber-OWL 2 Source Code" ; dcterms:description "Source code for Aber-OWL 2, the distributed version of AberOWL with a FastAPI central server, Elasticsearch search, an MCP server and OWLAPI reasoner worker containers." ; schema1:url . kgr:aberowl.code-legacy a schema1:ProcessProduct ; rdfs:label "AberOWL Source Code (original)" ; dcterms:description "Source code for the original AberOWL ontology repository and reasoning service." ; schema1:url . kgr:aberowl.docs a schema1:DocumentationProduct ; rdfs:label "AberOWL API Documentation" ; dcterms:description "AberOWL documentation page for the REST API and MCP server." ; schema1:url . kgr:aberowl.mcp a schema1:ProgrammingInterface ; rdfs:label "AberOWL MCP Server" ; dcterms:description "Model Context Protocol (MCP) server exposing AberOWL search, reasoning and SPARQL rewriting to AI agents over Streamable HTTP." ; schema1:url . kgr:aberowl.sparql a schema1:ProgrammingInterface ; rdfs:label "AberOWL SPARQL Rewriter" ; dcterms:description "SPARQL rewriting service (Aber-OWL SPARQL) that expands OWL DL frames embedded in SPARQL queries into concrete class IRIs, using the AberOWL reasoners. The rewritten query is returned for execution at an external SPARQL endpoint; AberOWL does not host a triple store." ; schema1:url . kgr:achilles.docs a schema1:DocumentationProduct ; rdfs:label "Project Achilles Overview" ; dcterms:description "Project Achilles overview page on the DepMap portal describing screening methods, computational models, and release practices." ; schema1:url . kgr:activedriverdb.api a schema1:ProgrammingInterface ; rdfs:label "ActiveDriverDB API" ; dcterms:description "REST API for retrieving ActiveDriverDB protein mutation, genomic mutation, and network annotations in JSON format." ; schema1:url . kgr:activedriverdb.portal a schema1:GraphicalInterface ; rdfs:label "ActiveDriverDB Web Portal" ; dcterms:description "Web interface for searching and browsing ActiveDriverDB proteins, mutations, pathways, and PTM-site annotations." ; schema1:url . kgr:ado.kg-bioportal a schema1:GraphProduct ; rdfs:label "ADO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Alzheimer's Disease Ontology (ADO), produced by KG-Bioportal from the BioPortal submission. The archive contains ADO_nodes.tsv and ADO_edges.tsv." ; schema1:url . kgr:ado.owl a schema1:OntologyProduct ; rdfs:label "ado.owl" ; dcterms:description "Alzheimer's Disease Ontology in OWL format" ; schema1:url . kgr:adrecs.web a schema1:Product ; rdfs:label "ADReCS Web Resource" ; dcterms:description "ADReCS web resource for browsing adverse drug reaction concepts and associations." ; schema1:url . kgr:adw.kg-bioportal a schema1:GraphProduct ; rdfs:label "ADW KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Animal Natural History and Life History Ontology (ADW), produced by KG-Bioportal from the BioPortal submission. The archive contains ADW_nodes.tsv and ADW_edges.tsv." ; schema1:url . kgr:adw.owl a schema1:OntologyProduct ; rdfs:label "adw.owl" ; dcterms:description "Animal natural history and life history ontology in OWL format." ; schema1:url . kgr:aelous.dataset a schema1:Product ; rdfs:label "AELOUS Dataset" ; dcterms:description "AELOUS dataset landing page hosted by Dryad." ; schema1:url . kgr:aeo.kg-bioportal a schema1:GraphProduct ; rdfs:label "AEO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Anatomical Entity Ontology (AEO), produced by KG-Bioportal from the BioPortal submission. The archive contains AEO_nodes.tsv and AEO_edges.tsv." ; schema1:url . kgr:aeo.owl a schema1:OntologyProduct ; rdfs:label "aeo.owl" ; dcterms:description "Anatomical Entity Ontology in OWL format" ; schema1:url . kgr:aero.kg-bioportal a schema1:GraphProduct ; rdfs:label "AERO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Adverse Event Reporting Ontology (AERO), produced by KG-Bioportal from the BioPortal submission. The archive contains AERO_nodes.tsv and AERO_edges.tsv." ; schema1:url . kgr:aero.owl a schema1:OntologyProduct ; rdfs:label "aero.owl" ; dcterms:description "Adverse Event Reporting Ontology in OWL format" ; schema1:url . kgr:afcs.molecule-pages a schema1:GraphicalInterface ; rdfs:label "AfCS-Nature Molecule Pages" ; dcterms:description "Historical Signaling Gateway Molecule Pages web interface for curated mammalian signaling protein information." ; schema1:url . kgr:afo.kg-bioportal a schema1:GraphProduct ; rdfs:label "AFO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Allotrope Merged Ontology Suite (AFO), produced by KG-Bioportal from the BioPortal submission. The archive contains AFO_nodes.tsv and AFO_edges.tsv." ; schema1:url . kgr:afo.ontobee a schema1:GraphicalInterface ; rdfs:label "AFO Ontobee Browser" ; dcterms:description "Ontobee browser page for the Allotrope Foundation Ontology." ; schema1:url . kgr:afo.release a schema1:OntologyProduct ; rdfs:label "AFO Release Page" ; dcterms:description "Allotrope Foundation Ontology release information and access page for current AFO product releases." ; schema1:url . kgr:afpo.owl a schema1:OntologyProduct ; rdfs:label "AfPO (OWL edition)" ; dcterms:description "The main ontology in OWL. Contains all MP terms and links to other OBO ontologies" ; schema1:url . kgr:agcros.portal a schema1:GraphicalInterface ; rdfs:label "AgCROS Open Data Portal" ; dcterms:description "The AgCROS open data portal, hosted on ArcGIS Hub, allows users to discover, analyze, and download data from the member research networks in formats including CSV, KML, Zip, GeoJSON, and GeoTIFF, along with GeoServices, WMS, and WFS API endpoints." ; schema1:url . kgr:agro.kg-bioportal a schema1:GraphProduct ; rdfs:label "AGRO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of AGRonomy Ontology (AGRO), produced by KG-Bioportal from the BioPortal submission. The archive contains AGRO_nodes.tsv and AGRO_edges.tsv." ; schema1:url . kgr:agro.owl a schema1:OntologyProduct ; rdfs:label "AgrO" ; dcterms:description "Contains all AgrO terms and links to other relevant ontologies." ; schema1:url . kgr:agroportal.api-docs a schema1:DocumentationProduct ; rdfs:label "AgroPortal REST API Documentation" ; dcterms:description "Documentation of the AgroPortal REST API endpoints and parameters." ; schema1:url . kgr:agroportal.sparql a schema1:ProgrammingInterface ; rdfs:label "AgroPortal SPARQL Endpoint" ; dcterms:description "Public SPARQL endpoint (Virtuoso) over the AgroPortal triple store, with a query interface on the portal." ; schema1:url . kgr:agrovoc.api a schema1:ProgrammingInterface ; rdfs:label "AGROVOC REST API" ; dcterms:description "Skosmos REST API for AGROVOC, returning vocabulary metadata, concept search results, labels and hierarchy as JSON-LD." ; schema1:url . kgr:agrovoc.browser a schema1:GraphicalInterface ; rdfs:label "AGROVOC Skosmos Browser" ; dcterms:description "Skosmos browser for searching and browsing AGROVOC concepts, labels and hierarchies in all supported languages. It always loads the latest AGROVOC LOD release." ; schema1:url . kgr:agrovoc.core.nt a schema1:OntologyProduct ; rdfs:label "AGROVOC Core Dump (N-Triples)" ; dcterms:description "AGROVOC Core release in N-Triples, with all concepts and labels in all languages exported from VocBench plus the mappings to other vocabularies." ; schema1:url . kgr:agrovoc.core.rdf a schema1:OntologyProduct ; rdfs:label "AGROVOC Core Dump (RDF/XML)" ; dcterms:description "AGROVOC Core release in RDF/XML, with all concepts and labels in all languages exported from VocBench plus the mappings to other vocabularies." ; schema1:url . kgr:agrovoc.docs a schema1:DocumentationProduct ; rdfs:label "AGROVOC Access Documentation" ; dcterms:description "AGROVOC documentation on access options (Skosmos, SPARQL, REST API and downloads), release contents and linked data mappings." ; schema1:url . kgr:agrovoc.lod.nq a schema1:GraphProduct ; rdfs:label "AGROVOC LOD Dump (N-Quads)" ; dcterms:description "AGROVOC LOD release in N-Quads, with named graphs carrying provenance (for example, Agrontology in its own graph)." ; schema1:url . kgr:agrovoc.lod.nt a schema1:GraphProduct ; rdfs:label "AGROVOC LOD Dump (N-Triples)" ; dcterms:description "AGROVOC LOD release in N-Triples (about 10 million triples), the distribution behind the SPARQL endpoint and web services. It adds SKOS core labels materialized from SKOS-XL, inverse and symmetric inferred triples, VoID links and the Agrontology vocabulary to the Core release." ; schema1:url . kgr:agrovoc.sparql a schema1:ProgrammingInterface ; rdfs:label "AGROVOC SPARQL Endpoint" ; dcterms:description "Public SPARQL endpoint (Apache Jena Fuseki) serving the AGROVOC LOD distribution, with a web form, sample queries and CSV download of results." ; schema1:url . kgr:agrovoc.void a schema1:Product ; rdfs:label "AGROVOC VoID Descriptor" ; dcterms:description "VoID description of the AGROVOC linked dataset, listing dumps, the SPARQL endpoint, triple counts, license and linksets to mapped vocabularies." ; schema1:url . kgr:aism.json a schema1:OntologyProduct ; rdfs:label "aism.json" ; dcterms:description "Ontology for the Anatomy of the Insect SkeletoMuscular system (AISM) in JSON format" ; schema1:url . kgr:aism.kg-bioportal a schema1:GraphProduct ; rdfs:label "AISM KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Ontology for the Anatomy of the Insect SkeletoMuscular system (AISM), produced by KG-Bioportal from the BioPortal submission. The archive contains AISM_nodes.tsv and AISM_edges.tsv." ; schema1:url . kgr:aism.obo a schema1:OntologyProduct ; rdfs:label "aism.obo" ; dcterms:description "Ontology for the Anatomy of the Insect SkeletoMuscular system (AISM) in OBO format" ; schema1:url . kgr:aism.owl a schema1:OntologyProduct ; rdfs:label "aism.owl" ; dcterms:description "Ontology for the Anatomy of the Insect SkeletoMuscular system (AISM) in OWL format" ; schema1:url . kgr:alliance.api a schema1:ProgrammingInterface ; rdfs:label "Alliance API" ; dcterms:description "REST/JSON API providing programmatic access to integrated gene, orthology, phenotype, disease, expression, and variant endpoints" ; schema1:url . kgr:alliance.downloads a schema1:Product ; rdfs:label "Alliance Data Downloads (Root)" ; dcterms:description "Root directory for release-specific bulk data dumps (JSON, TSV, GAF, and other formats) for genes, orthology, phenotypes, disease associations, alleles, and related integrated datasets; individual per-file products can be programmatically enumerated in future updates" ; schema1:url . kgr:alliance.jbrowse2 a schema1:GraphicalInterface ; rdfs:label "Alliance JBrowse 2" ; dcterms:description "JBrowse 2 genome browser instance for interactive visualization of genomes, annotations, and variants across species" ; schema1:url . kgr:alliance.mine a schema1:GraphicalInterface ; rdfs:label "AllianceMine" ; dcterms:description "AllianceMine instance (InterMine-based) enabling advanced query building over integrated genomic data" ; schema1:url . kgr:alliance.openapi a schema1:ProgrammingInterface ; rdfs:label "Alliance OpenAPI Spec" ; dcterms:description "OpenAPI specification (machine-readable) for the Alliance REST API" ; schema1:url . kgr:alliance.portal a schema1:GraphicalInterface ; rdfs:label "Alliance Web Portal" ; dcterms:description "Primary web portal for integrated cross-species search and exploration of genes, phenotypes, disease models, expression, variants, and orthology summaries" ; schema1:url . kgr:alliance.textpresso a schema1:GraphicalInterface ; rdfs:label "Alliance Textpresso" ; dcterms:description "Textpresso literature mining interface for full-text and ontology term powered searches across curated publications" ; schema1:url . kgr:alphafold.api a schema1:ProgrammingInterface ; rdfs:label "AlphaFold DB REST API" ; dcterms:description "REST API providing programmatic access to AlphaFold predicted structure entries and associated files (mmCIF, PDB, BCIF, confidence JSON, and PAE) by UniProt accession." ; schema1:url . kgr:alphafold.docs a schema1:DocumentationProduct ; rdfs:label "AlphaFold DB Documentation" ; dcterms:description "Documentation, FAQs, and help describing AlphaFold DB data, the confidence metrics, download options, and usage guidance." ; schema1:url . kgr:alphafold.downloads a schema1:Product ; rdfs:label "AlphaFold DB Bulk Downloads" ; dcterms:description "Bulk downloads of predicted protein structures for the human proteome, the Swiss-Prot subset, and many other organism proteomes, provided as mmCIF and PDB structure files together with confidence (pLDDT) and predicted aligned error (PAE) data." ; schema1:url . kgr:alphafold.web a schema1:GraphicalInterface ; rdfs:label "AlphaFold DB Web Interface" ; dcterms:description "Web interface for searching and browsing AlphaFold predicted protein structures by UniProt accession, gene name, or organism, with interactive 3D structure visualization and confidence colouring." ; schema1:url . kgr:alphamissense.docs a schema1:DocumentationProduct ; rdfs:label "AlphaMissense Documentation" ; dcterms:description "Project overview, methodology, and links to data resources for AlphaMissense, provided by Google DeepMind." ; schema1:url . kgr:alphamissense.predictions a schema1:Product ; rdfs:label "AlphaMissense Variant Predictions" ; dcterms:description "Precomputed AlphaMissense pathogenicity predictions for all possible human missense variants and amino acid substitutions, including per-variant pathogenicity scores and class labels. Distributed as tab-separated value files via Zenodo and Google Cloud Storage." ; schema1:url . kgr:alphamissense.software a schema1:ProcessProduct ; rdfs:label "AlphaMissense Software" ; dcterms:description "Open-source implementation of the AlphaMissense model used to predict the pathogenicity of missense variants, released for academic reproducibility." ; schema1:url . kgr:alphamissense.viewer a schema1:GraphicalInterface ; rdfs:label "AlphaMissense Hosted Viewer" ; dcterms:description "Web-based viewer for exploring AlphaMissense pathogenicity predictions, allowing users to look up genes and variants and inspect per-residue pathogenicity scores." ; schema1:url . kgr:aminode.site a schema1:GraphicalInterface ; rdfs:label "Aminode Website" ; dcterms:description "Web tool for inferring evolutionarily constrained regions in human proteins." ; schema1:url . kgr:amphx.kg-bioportal a schema1:GraphProduct ; rdfs:label "AMPHX KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of The Amphioxus Development and Anatomy Ontology (AMPHX), produced by KG-Bioportal from the BioPortal submission. The archive contains AMPHX_nodes.tsv and AMPHX_edges.tsv." ; schema1:url . kgr:amphx.obo a schema1:OntologyProduct ; rdfs:label "amphx.obo" ; dcterms:description "The Amphioxus Development and Anatomy Ontology in OBO format" ; schema1:url . kgr:amphx.owl a schema1:OntologyProduct ; rdfs:label "amphx.owl" ; dcterms:description "The Amphioxus Development and Anatomy Ontology in OWL format" ; schema1:url . kgr:annotator.api a schema1:ProgrammingInterface ; rdfs:label "Translator Annotator API" ; dcterms:description "Public HTTP REST API for CURIE-based biomedical entity annotation lookups (e.g. /curie/{curie}) in Translator, returning aggregated metadata as JSON." ; schema1:url . kgr:annotator.portal a schema1:GraphicalInterface ; rdfs:label "Translator Annotator API Documentation" ; dcterms:description "Interactive Swagger UI for exploring and testing the Annotator Service REST API." ; schema1:url . kgr:aop-db.manual a schema1:DocumentationProduct ; rdfs:label "Manual" ; dcterms:description "The EPA Adverse Outcome Pathway Database (Aop-DB) Application User Manual" ; schema1:url . kgr:aop-db.portal a schema1:GraphicalInterface ; rdfs:label "AOP-DB Information Portal" ; dcterms:description "Public information portal describing the AOP-DB scope, data integration approach, and access points" ; schema1:url . kgr:aop-wiki.devhandbook a schema1:DocumentationProduct ; rdfs:label "AOP Developers' Handbook" ; dcterms:description "This document is the AOP Developers' Handbook supplement to the Guidance Document for developing and assessing Adverse Outcome Pathways (AOPs). The Guidance Document provides a historical background for the AOP development programme, and outlines the elements required to construct an AOP as well as the principles of the AOP framework." ; schema1:url . kgr:aop-wiki.dynamic-aop-xml a schema1:Product ; rdfs:label "AOP-Wiki Dynamic AOP XML Feed" ; dcterms:description "Per-AOP dynamic XML feed accessible via each AOP page (XML button) for up-to-minute content retrieval" ; schema1:url . kgr:aop-wiki.ke-components a schema1:Product ; rdfs:label "AOP-Wiki Key Event Components TSV" ; dcterms:description "Tab-delimited subset of Key Event Components (actions, biological objects/processes with ontology references)" ; schema1:url . kgr:aop-wiki.ke-overview a schema1:Product ; rdfs:label "AOP-Wiki Key Events TSV" ; dcterms:description "Tab-delimited subset listing AOP to Key Event (including MIE, intermediate KE, and Adverse Outcome) associations" ; schema1:url . kgr:aop-wiki.ker a schema1:Product ; rdfs:label "AOP-Wiki Key Event Relationships TSV" ; dcterms:description "Tab-delimited subset listing Key Event Relationships (KERs) with evidence and quantitative understanding indicators" ; schema1:url . kgr:aop-wiki.nightly-xml a schema1:Product ; rdfs:label "AOP-Wiki Nightly XML Export" ; dcterms:description "Nightly XML export (rolling) containing latest AOP-Wiki content (overwritten daily)" ; schema1:url . kgr:aop-wiki.portal a schema1:GraphicalInterface ; rdfs:label "AOP-Wiki Portal" ; dcterms:description "Web portal for browsing, authoring, and reviewing AOPs, key events (KEs), key event relationships (KERs), stressors, and supporting documentation" ; schema1:url . kgr:aop-wiki.quarterly-xml a schema1:Product ; rdfs:label "AOP-Wiki Quarterly XML Snapshot" ; dcterms:description "Quarterly permanent XML snapshot (versioned) of AOP-Wiki content suitable for citation and archival use" ; schema1:url . kgr:apo.kg-bioportal a schema1:GraphProduct ; rdfs:label "APO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Ascomycete Phenotype Ontology (APO), produced by KG-Bioportal from the BioPortal submission. The archive contains APO_nodes.tsv and APO_edges.tsv." ; schema1:url . kgr:apo.obo a schema1:OntologyProduct ; rdfs:label "apo.obo" ; dcterms:description "Ascomycete phenotype ontology in OBO format" ; schema1:url . kgr:apo.owl a schema1:OntologyProduct ; rdfs:label "apo.owl" ; dcterms:description "Ascomycete phenotype ontology in OWL format" ; schema1:url . kgr:apollo_sv.kg-bioportal a schema1:GraphProduct ; rdfs:label "APOLLO-SV KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Apollo Structured Vocabulary (APOLLO-SV), produced by KG-Bioportal from the BioPortal submission. The archive contains APOLLO-SV_nodes.tsv and APOLLO-SV_edges.tsv." ; schema1:url . kgr:apollo_sv.owl a schema1:OntologyProduct ; rdfs:label "apollo_sv.owl" ; dcterms:description "Apollo Structured Vocabulary in OWL format" ; schema1:url . kgr:aragorn.api a schema1:ProgrammingInterface ; rdfs:label "ARAGORN API" ; dcterms:description "TRAPI-compliant API documentation for biomedical question answering" ; schema1:url . kgr:aragorn.ui a schema1:GraphicalInterface ; rdfs:label "ARAGORN User Interface" ; dcterms:description "Web interface for querying ARAGORN" ; schema1:url . kgr:araport.araport11 a schema1:Product ; rdfs:label "Araport11 Genome Annotation (Phytozome)" ; dcterms:description "The Araport11 reannotation of the Arabidopsis thaliana Col-0 reference genome (gene models, transcripts, and non-coding RNAs), distributed through the JGI Phytozome plant genomics portal." ; schema1:url . kgr:araport.thalemine a schema1:GraphicalInterface ; rdfs:label "ThaleMine (BAR)" ; dcterms:description "ThaleMine, the InterMine-based data warehouse originally developed for Araport, now hosted at the Bio-Analytic Resource for Plant Biology (BAR), serving Araport11-based gene and functional data." ; schema1:url . kgr:arax.api a schema1:ProgrammingInterface ; rdfs:label "ARAX TRAPI API" ; dcterms:description "TRAPI-compliant API endpoint for programmatic access to ARAX reasoning capabilities. Supports v1.3+ of the Translator Reasoner API standard. Provides /query, /asyncquery, and /entity endpoints." ; schema1:url . kgr:arax.araxi.docs a schema1:DocumentationProduct ; rdfs:label "ARAXi Documentation" ; dcterms:description "ARAXi domain-specific language documentation for expressing knowledge graph analysis workflows." ; schema1:url . kgr:arax.examples a schema1:DocumentationProduct ; rdfs:label "ARAX Examples" ; dcterms:description "Example queries and workflows demonstrating ARAX capabilities for various translational biomedicine use cases." ; schema1:url . kgr:arax.github a schema1:ProgrammingInterface ; rdfs:label "RTX GitHub Repository" ; dcterms:description "Source code repository for ARAX and the RTX system including ARAX-specific modules and RTX-KG2 knowledge graph." ; schema1:url . kgr:arax.ui a schema1:GraphicalInterface ; rdfs:label "ARAX Web UI" ; dcterms:description "Web browser interface for querying ARAX and exploring answers. Provides interactive visual query graph builder, TRAPI operations input, TRAPI JSON input, and ARAXi workflow language input methods." ; schema1:url . kgr:archs4.archs4py a schema1:Product ; rdfs:label "archs4py" ; dcterms:description "Official Python package for downloading, loading, querying, normalizing, and processing ARCHS4 HDF5 data files" ; schema1:url . kgr:archs4.archs4r a schema1:Product ; rdfs:label "archs4r" ; dcterms:description "Official R package for loading, querying, and analyzing ARCHS4 HDF5 data files" ; schema1:url . kgr:archs4.help a schema1:DocumentationProduct ; rdfs:label "ARCHS4 Help" ; dcterms:description "ARCHS4 help page covering downloads, client packages, licensing, and citation information" ; schema1:url . kgr:archs4.portal a schema1:GraphicalInterface ; rdfs:label "ARCHS4 Portal" ; dcterms:description "Web portal for metadata search, expression lookup, signature search, and interactive exploration of ARCHS4 sample and gene spaces" ; schema1:url . kgr:aro.kg-bioportal a schema1:GraphProduct ; rdfs:label "ARO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Antibiotic Resistance Ontology (ARO), produced by KG-Bioportal from the BioPortal submission. The archive contains ARO_nodes.tsv and ARO_edges.tsv." ; schema1:url . kgr:aro.owl a schema1:OntologyProduct ; rdfs:label "aro.owl" ; dcterms:description "Antibiotic Resistance Ontology in OWL format" ; schema1:url . kgr:arrayexpress.annotare a schema1:GraphicalInterface ; rdfs:label "Annotare Submission Tool" ; dcterms:description "Annotare, the web-based submission tool for depositing microarray and sequencing experiments and their metadata into ArrayExpress." ; schema1:url . kgr:arrayexpress.ftp a schema1:Product ; rdfs:label "ArrayExpress FTP Archive" ; dcterms:description "FTP/HTTPS archive of ArrayExpress study files, organized by accession prefix, including IDF and SDRF (MAGE-TAB) metadata, raw data and processed data files." ; schema1:url . kgr:arrayexpress.portal a schema1:GraphicalInterface ; rdfs:label "ArrayExpress Web Interface" ; dcterms:description "Searchable web interface for browsing ArrayExpress functional genomics studies, their sample and protocol metadata, and their data files." ; schema1:url . kgr:atc.classification a schema1:DocumentationProduct ; rdfs:label "WHO ATC Classification Documentation" ; dcterms:description "WHO ATC/DDD Toolkit page describing the ATC classification structure, levels, and classification principles." ; schema1:url . kgr:atc.index a schema1:Product ; rdfs:label "ATC DDD Index" ; dcterms:description "WHOCC ATC/DDD index and classification browser." ; schema1:url . kgr:atc.kg-bioportal a schema1:GraphProduct ; rdfs:label "ATC KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Anatomical Therapeutic Chemical Classification (ATC), produced by KG-Bioportal from the BioPortal submission. The archive contains ATC_nodes.tsv and ATC_edges.tsv." ; schema1:url . kgr:atc.methodology a schema1:DocumentationProduct ; rdfs:label "WHO ATC/DDD Methodology Documentation" ; dcterms:description "WHO ATC/DDD Toolkit page describing the methodology, responsible organizations, and guidance for ATC classification and DDD assignment." ; schema1:url . kgr:atgo.ontology a schema1:OntologyProduct ; rdfs:label "ATGO Hierarchical Ontology" ; dcterms:description "Second-generation hierarchical ontology of 220 autophagy functions built from 156,364 synthetic-lethal genetic interactions across autophagy-activating conditions in Saccharomyces cerevisiae." ; schema1:url . kgr:athena.web a schema1:GraphicalInterface ; rdfs:label "Athena Vocabulary Browser" ; dcterms:description "Web interface for searching and browsing standardized vocabularies; account login is required for download workflows" ; schema1:url . kgr:ato.kg-bioportal a schema1:GraphProduct ; rdfs:label "ATO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Amphibian Taxonomy Ontology (ATO), produced by KG-Bioportal from the BioPortal submission. The archive contains ATO_nodes.tsv and ATO_edges.tsv." ; schema1:url . kgr:ato.owl a schema1:OntologyProduct ; rdfs:label "Amphibian taxonomy OWL edition" ; dcterms:description "Canonical OWL edition of the Amphibian Taxonomy Ontology distributed via OBO PURL." ; schema1:url . kgr:auntbertha.site a schema1:GraphicalInterface ; rdfs:label "findhelp Directory" ; dcterms:description "Searchable web directory of free and reduced-cost social care services, including organizations, programs, locations, and hours." ; schema1:url . kgr:babel.code a schema1:ProcessProduct ; rdfs:label "Babel Source Code" ; dcterms:description "Source code for the Babel pipeline (Snakemake and Python), with per-release notes in the releases directory." ; schema1:url . kgr:babel.conflation a schema1:MappingProduct ; rdfs:label "Babel Conflation Files" ; dcterms:description "Conflation files that merge cliques across types, DrugChemical.txt and GeneProtein.txt, each line a JSON array of the clique identifiers to treat as one concept." ; schema1:url . kgr:babel.docs a schema1:DocumentationProduct ; rdfs:label "Babel Data Formats Documentation" ; dcterms:description "Babel documentation on the download layout and the custom JSON data formats of the compendia, synonym and conflation files." ; schema1:url . kgr:babel.duckdb a schema1:Product ; rdfs:label "Babel DuckDB and Parquet Exports" ; dcterms:description "DuckDB databases and Apache Parquet exports of the Babel outputs (Concord, Identifier and Metadata tables) for faster querying than the JSON files." ; schema1:url . kgr:babel.kgx a schema1:GraphProduct ; rdfs:label "Babel KGX Files" ; dcterms:description "Babel compendia in KGX JSON Lines format, with node and edge files for each Biolink type." ; schema1:url . kgr:babel.synonyms a schema1:Product ; rdfs:label "Babel Synonyms" ; dcterms:description "Synonym files for each Babel type, one JSON object per CURIE with its names, Biolink types, preferred name and clique size, as loaded into the Name Resolver. Includes DrugChemical and GeneProtein conflated versions." ; schema1:url . kgr:bacdive.api a schema1:ProgrammingInterface ; rdfs:label "BacDive API" ; dcterms:description "BacDive RESTful API for programmatic retrieval of strain data. Access requires free registration (publicly available credentials)." ; schema1:url . kgr:bacdive.client_examples a schema1:ProgrammingInterface ; rdfs:label "BacDive API Client Examples (Python/R)" ; dcterms:description "Example client packages and code for accessing the BacDive API from Python and R." ; schema1:url . kgr:bacdive.portal a schema1:GraphicalInterface ; rdfs:label "BacDive Web Portal" ; dcterms:description "BacDive web interface for browsing, searching, and exploring standardized strain-level data for over 99,000 bacterial strains, including advanced search and the TAXplorer taxonomic exploration tool." ; schema1:url . kgr:bactotraits.database a schema1:Product ; rdfs:label "BactoTraits Database and Downloads" ; dcterms:description "BactoTraits database with downloadable trait datasets" ; schema1:url . kgr:bao.complete-owl a schema1:OntologyProduct ; rdfs:label "BAO complete OWL" ; dcterms:description "The complete BioAssay Ontology in OWL format, integrating the core ontology with its biology, properties, and vocabulary modules." ; schema1:url . kgr:bao.core-owl a schema1:OntologyProduct ; rdfs:label "BAO core OWL" ; dcterms:description "The core BioAssay Ontology module in OWL format, containing the foundational BAO classes and relations." ; schema1:url . kgr:bao.kg-bioportal a schema1:GraphProduct ; rdfs:label "BAO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of BioAssay Ontology (BAO), produced by KG-Bioportal from the BioPortal submission. The archive contains BAO_nodes.tsv and BAO_edges.tsv." ; schema1:url . kgr:bao.website a schema1:GraphicalInterface ; rdfs:label "BioAssay Ontology website" ; dcterms:description "The BioAssay Ontology project website, providing documentation, background, and access to BAO releases and tools." ; schema1:url . kgr:batman.web a schema1:GraphicalInterface ; rdfs:label "BATMAN-TCM Web Interface" ; dcterms:description "Interactive BATMAN-TCM 2.0 web interface for querying traditional Chinese medicine ingredients, herbs, formulas, target proteins, and enriched pathways." ; schema1:url . kgr:bbmri-eric-directory.api.graphql a schema1:ProgrammingInterface ; rdfs:label "BBMRI-ERIC Directory GraphQL API" ; dcterms:description "MOLGENIS EMX2 GraphQL endpoint for the ERIC schema of the Directory, with tables such as Biobanks, Collections, Studies, Networks and Persons. A playground is linked from the server's API index page." ; schema1:url . kgr:bbmri-eric-directory.jsonld a schema1:GraphProduct ; rdfs:label "BBMRI-ERIC Directory JSON-LD Export" ; dcterms:description "JSON-LD export of the Directory's ERIC schema, generated by MOLGENIS EMX2 from the Directory tables." ; schema1:url . kgr:bbmri-eric-directory.miabis a schema1:DataModelProduct ; rdfs:label "MIABIS Specification" ; dcterms:description "Specification of MIABIS (Minimum Information About BIobank data Sharing), the biobank metadata standard on which the Directory data model is based, covering MIABIS Core, Sample and Sample Donor components." ; schema1:url . kgr:bbmri-eric-directory.negotiator a schema1:GraphicalInterface ; rdfs:label "BBMRI-ERIC Negotiator" ; dcterms:description "BBMRI-ERIC Negotiator, the request system used to contact biobanks and negotiate access to samples and data for collections selected in the Directory. Its REST API is documented with Swagger." ; schema1:url . kgr:bbmri-eric-directory.portal a schema1:GraphicalInterface ; rdfs:label "BBMRI-ERIC Directory Catalogue" ; dcterms:description "Web catalogue for searching and browsing biobanks, collections, studies and services in the BBMRI-ERIC Directory, with facets for diagnosis, country, material type, data category and quality label, and a cart for sending requests to the BBMRI-ERIC Negotiator." ; schema1:url . kgr:bcgo.kg-bioportal a schema1:GraphProduct ; rdfs:label "OBI_BCGO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Beta Cell Genomics Ontology (OBI_BCGO), produced by KG-Bioportal from the BioPortal submission. The archive contains OBI_BCGO_nodes.tsv and OBI_BCGO_edges.tsv." ; schema1:url . kgr:bcgo.owl a schema1:OntologyProduct ; rdfs:label "bcgo.owl" ; dcterms:description "Beta Cell Genomics Ontology in OWL format" ; schema1:url . kgr:bco.kg-bioportal a schema1:GraphProduct ; rdfs:label "BCO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Biological Collections Ontology (BCO), produced by KG-Bioportal from the BioPortal submission. The archive contains BCO_nodes.tsv and BCO_edges.tsv." ; schema1:url . kgr:bco.owl a schema1:OntologyProduct ; rdfs:label "bco.owl" ; dcterms:description "Biological Collections Ontology in OWL format" ; schema1:url . kgr:berkeleybop a "Organization" ; rdfs:label "Berkeley Bioinformatics Open-source Projects" . kgr:bfo.kg-bioportal a schema1:GraphProduct ; rdfs:label "BFO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Basic Formal Ontology (BFO), produced by KG-Bioportal from the BioPortal submission. The archive contains BFO_nodes.tsv and BFO_edges.tsv." ; schema1:url . kgr:bfo.obo a schema1:OntologyProduct ; rdfs:label "bfo.obo" ; dcterms:description "Basic Formal Ontology in OBO format" ; schema1:url . kgr:bfo.owl a schema1:OntologyProduct ; rdfs:label "bfo.owl" ; dcterms:description "Basic Formal Ontology in OWL format" ; schema1:url . kgr:bgee.expr_calls a schema1:Product ; rdfs:label "Bgee Expression Calls" ; dcterms:description "Complete data dump of Bgee expression data for all species" ; schema1:url . kgr:bgee.rdf a schema1:Product ; rdfs:label "Bgee RDF Data" ; dcterms:description "RDF version of the Bgee data for semantic web applications" ; schema1:url . kgr:bgee.site a schema1:GraphicalInterface ; rdfs:label "Bgee Web Interface" ; dcterms:description "Web interface for exploring Bgee data" ; schema1:url . kgr:bgee.sparql a schema1:ProgrammingInterface ; rdfs:label "Bgee SPARQL Endpoint" ; dcterms:description "SPARQL endpoint for querying Bgee RDF data" ; schema1:url . kgr:bila.owl a schema1:OntologyProduct ; rdfs:label "bila.owl" ; dcterms:description "Bilateria anatomy in OWL format" ; schema1:url . kgr:bind.data a schema1:Product ; rdfs:label "BIND Data" ; dcterms:description "Historical dataset of biomolecular interactions, complexes, and pathways." . kgr:bindingdb.all_2d a schema1:Product ; rdfs:label "BindingDB All Data (2D structures)" ; dcterms:description "Full dataset containing all binding measurements in BindingDB with 2D compound structures" ; schema1:url . kgr:bindingdb.all_3d a schema1:Product ; rdfs:label "BindingDB All Data (3D structures)" ; dcterms:description "Full dataset containing all binding measurements in BindingDB with 3D compound structures" ; schema1:url . kgr:bindingdb.all_tsv a schema1:Product ; rdfs:label "BindingDB All Data (TSV)" ; dcterms:description "Full dataset containing all binding measurements in BindingDB in tab-separated values format" ; schema1:url . kgr:bindingdb.api a schema1:ProgrammingInterface ; rdfs:label "BindingDB RESTful API" ; dcterms:description "RESTful web services for programmatic access to BindingDB data" ; schema1:url . kgr:bindingdb.articles_2d a schema1:Product ; rdfs:label "BindingDB Articles Data (2D structures)" ; dcterms:description "Data curated from articles by BindingDB with 2D compound structures" ; schema1:url . kgr:bindingdb.articles_3d a schema1:Product ; rdfs:label "BindingDB Articles Data (3D structures)" ; dcterms:description "Data curated from articles by BindingDB with 3D compound structures" ; schema1:url . kgr:bindingdb.articles_tsv a schema1:Product ; rdfs:label "BindingDB Articles Data (TSV)" ; dcterms:description "Data curated from articles by BindingDB in tab-separated values format" ; schema1:url . kgr:bindingdb.chebi_mapping a schema1:MappingProduct ; rdfs:label "BindingDB-ChEBI Mapping" ; dcterms:description "Mapping of BindingDB monomer (compound) IDs to ChEBI IDs" ; schema1:url . kgr:bindingdb.chembl_2d a schema1:Product ; rdfs:label "BindingDB ChEMBL Data (2D structures)" ; dcterms:description "Data in BindingDB drawn from ChEMBL with 2D compound structures" ; schema1:url . kgr:bindingdb.chembl_3d a schema1:Product ; rdfs:label "BindingDB ChEMBL Data (3D structures)" ; dcterms:description "Data in BindingDB drawn from ChEMBL with 3D compound structures" ; schema1:url . kgr:bindingdb.chembl_tsv a schema1:Product ; rdfs:label "BindingDB ChEMBL Data (TSV)" ; dcterms:description "Data in BindingDB drawn from ChEMBL in tab-separated values format" ; schema1:url . kgr:bindingdb.cid_mapping a schema1:MappingProduct ; rdfs:label "BindingDB-PubChem CID Mapping" ; dcterms:description "Mapping of BindingDB monomer (compound) IDs to PubChem CIDs" ; schema1:url . kgr:bindingdb.covid19_2d a schema1:Product ; rdfs:label "BindingDB COVID-19 Data (2D structures)" ; dcterms:description "COVID-19 related binding data with 2D compound structures" ; schema1:url . kgr:bindingdb.covid19_3d a schema1:Product ; rdfs:label "BindingDB COVID-19 Data (3D structures)" ; dcterms:description "COVID-19 related binding data with 3D compound structures" ; schema1:url . kgr:bindingdb.covid19_tsv a schema1:Product ; rdfs:label "BindingDB COVID-19 Data (TSV)" ; dcterms:description "COVID-19 related binding data in tab-separated values format" ; schema1:url . kgr:bindingdb.drugbank_mapping a schema1:MappingProduct ; rdfs:label "BindingDB-DrugBank Mapping" ; dcterms:description "Mapping of BindingDB monomer (compound) IDs to DrugBank IDs" ; schema1:url . kgr:bindingdb.patents_2d a schema1:Product ; rdfs:label "BindingDB Patents Data (2D structures)" ; dcterms:description "Data in BindingDB drawn from Patents with 2D compound structures" ; schema1:url . kgr:bindingdb.patents_3d a schema1:Product ; rdfs:label "BindingDB Patents Data (3D structures)" ; dcterms:description "Data in BindingDB drawn from Patents with 3D compound structures" ; schema1:url . kgr:bindingdb.patents_tsv a schema1:Product ; rdfs:label "BindingDB Patents Data (TSV)" ; dcterms:description "Data in BindingDB drawn from Patents in tab-separated values format" ; schema1:url . kgr:bindingdb.pubchem_2d a schema1:Product ; rdfs:label "BindingDB PubChem Data (2D structures)" ; dcterms:description "Data in BindingDB drawn from PubChem with 2D compound structures" ; schema1:url . kgr:bindingdb.pubchem_3d a schema1:Product ; rdfs:label "BindingDB PubChem Data (3D structures)" ; dcterms:description "Data in BindingDB drawn from PubChem with 3D compound structures" ; schema1:url . kgr:bindingdb.pubchem_tsv a schema1:Product ; rdfs:label "BindingDB PubChem Data (TSV)" ; dcterms:description "Data in BindingDB drawn from PubChem in tab-separated values format" ; schema1:url . kgr:bindingdb.sid_mapping a schema1:MappingProduct ; rdfs:label "BindingDB-PubChem SID Mapping" ; dcterms:description "Mapping of BindingDB monomer (compound) IDs to PubChem SIDs" ; schema1:url . kgr:bindingdb.target_sequences a schema1:Product ; rdfs:label "BindingDB Target Sequences" ; dcterms:description "FASTA format protein sequences of all protein targets in BindingDB" ; schema1:url . kgr:bindingdb.uniprot_mapping a schema1:MappingProduct ; rdfs:label "BindingDB-UniProt Mapping" ; dcterms:description "Mapping of BindingDB polymer (single protein) IDs to UniProt IDs" ; schema1:url . kgr:bio101.kg-bioportal a schema1:GraphProduct ; rdfs:label "AURA KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of KB_Bio_101 (AURA), produced by KG-Bioportal from the BioPortal submission. The archive contains AURA_nodes.tsv and AURA_edges.tsv." ; schema1:url . kgr:bio2rdf.api a schema1:ProgrammingInterface ; rdfs:label "Bio2RDF REST API" ; dcterms:description "REST API for programmatic access to Bio2RDF linked data with support for SPARQL queries and multiple result formats" ; schema1:url . kgr:bio2rdf.biosearch a schema1:Product ; rdfs:label "BioSearch Semantic Search Engine" ; dcterms:description "BioSearch semantic search engine for Bio2RDF providing full-text and semantic search across integrated biological databases" ; schema1:url . kgr:bio2rdf.dumps a schema1:Product ; rdfs:label "Bio2RDF RDF Dumps and Downloads" ; dcterms:description "Downloadable RDF triple stores and datasets in multiple serialization formats (Turtle, N-Triples, RDF/XML, N3) from 35+ integrated biological databases" ; schema1:url . kgr:bio2rdf.sparql a schema1:ProgrammingInterface ; rdfs:label "Bio2RDF SPARQL Endpoint" ; dcterms:description "SPARQL 1.1 endpoint powered by OpenLink Virtuoso for querying Bio2RDF linked data across 35+ integrated biomedical databases with federated query support" ; schema1:url . kgr:bio2rdf.web a schema1:GraphicalInterface ; rdfs:label "Bio2RDF Web Interface" ; dcterms:description "Web-based interface for browsing and exploring Bio2RDF resources and linked data across biological databases" ; schema1:url . kgr:biobricks-aopwiki.sparql a schema1:ProgrammingInterface ; rdfs:label "BioBricks AOP-Wiki SPARQL" ; dcterms:description "SPARQL endpoint for BioBricks AOP-Wiki" ; schema1:url . kgr:biobricks-aopwiki.tpf a schema1:ProgrammingInterface ; rdfs:label "BioBricks AOP-Wiki TPF" ; dcterms:description "Triple Pattern Fragments endpoint for BioBricks AOP-Wiki" ; schema1:url . kgr:biobricks-ice.sparql a schema1:ProgrammingInterface ; rdfs:label "BioBricks ICE SPARQL" ; dcterms:description "SPARQL endpoint for BioBricks ICE" ; schema1:url . kgr:biobricks-ice.tpf a schema1:ProgrammingInterface ; rdfs:label "BioBricks ICE TPF" ; dcterms:description "Triple Pattern Fragments endpoint for BioBricks ICE" ; schema1:url . kgr:biobricks-mesh.sparql a schema1:ProgrammingInterface ; rdfs:label "BioBricks MeSH SPARQL" ; dcterms:description "SPARQL endpoint for BioBricks MeSH" ; schema1:url . kgr:biobricks-mesh.tpf a schema1:ProgrammingInterface ; rdfs:label "BioBricks MeSH TPF" ; dcterms:description "Triple Pattern Fragments endpoint for BioBricks MeSH" ; schema1:url . kgr:biobricks-pubchem-annotations.sparql a schema1:ProgrammingInterface ; rdfs:label "BioBricks PubChem Annotations SPARQL" ; dcterms:description "SPARQL endpoint for BioBricks PubChem Annotations" ; schema1:url . kgr:biobricks-pubchem-annotations.tpf a schema1:ProgrammingInterface ; rdfs:label "BioBricks PubChem Annotations TPF" ; dcterms:description "Triple Pattern Fragments endpoint for BioBricks PubChem Annotations" ; schema1:url . kgr:biobricks-tox21.sparql a schema1:ProgrammingInterface ; rdfs:label "BioBricks Tox21 SPARQL" ; dcterms:description "SPARQL endpoint for BioBricks Tox21" ; schema1:url . kgr:biobricks-tox21.tpf a schema1:ProgrammingInterface ; rdfs:label "BioBricks Tox21 TPF" ; dcterms:description "Triple Pattern Fragments endpoint for BioBricks Tox21" ; schema1:url . kgr:biobricks-toxcast.sparql a schema1:ProgrammingInterface ; rdfs:label "BioBricks ToxCast SPARQL" ; dcterms:description "SPARQL endpoint for BioBricks ToxCast" ; schema1:url . kgr:biobricks-toxcast.tpf a schema1:ProgrammingInterface ; rdfs:label "BioBricks ToxCast TPF" ; dcterms:description "Triple Pattern Fragments endpoint for BioBricks ToxCast" ; schema1:url . kgr:biobtree.docs a schema1:DocumentationProduct ; rdfs:label "BioBTree Repository and Documentation" ; dcterms:description "Source code, dataset documentation, and usage instructions for BioBTree, including the list of integrated data sources and the local build and command-line tooling." ; schema1:url . kgr:biobtree.mcp a schema1:ProgrammingInterface ; rdfs:label "BioBTree MCP Server" ; dcterms:description "Model Context Protocol (MCP) server exposing BioBTree to AI and LLM clients for natural-language querying grounded in the integrated biomedical databases." ; schema1:url . kgr:biobtree.qa a schema1:GraphicalInterface ; rdfs:label "BioBTree Q&A Interface" ; dcterms:description "Web-based question-and-answer interface that generates factual, identifier-anchored answers to biological questions, with each answer linked to the underlying REST API calls." ; schema1:url . kgr:biodata-catalyst.docs a schema1:DocumentationProduct ; rdfs:label "BioData Catalyst Documentation" ; dcterms:description "BDC user documentation covering account setup, data access checks, PIC-SURE, Gen3, Seven Bridges, Terra and other ecosystem components." ; schema1:url . kgr:biodivportal.annotator a schema1:ProcessProduct ; rdfs:label "BiodivPortal Annotator" ; dcterms:description "Text annotation service that tags free text with concepts from the semantic artefacts hosted in BiodivPortal, available through the portal and the REST API (https://data.biodivportal.gfbio.org/annotator, API key required)." ; schema1:url . kgr:biodivportal.api-docs a schema1:DocumentationProduct ; rdfs:label "BiodivPortal API Documentation" ; dcterms:description "Documentation for the BiodivPortal REST API, listing endpoints and parameters." ; schema1:url . kgr:biofactoid.api a schema1:ProgrammingInterface ; rdfs:label "Biofactoid API" ; dcterms:description "Public API (documented via Swagger UI) for programmatic access to Biofactoid pathway documents." ; schema1:url . kgr:biofactoid.documents a schema1:Product ; rdfs:label "Biofactoid Pathway Documents" ; dcterms:description "Openly downloadable author-contributed pathway documents, exportable in Biofactoid's native JSON format as well as BioPAX and SBGNML standards." ; schema1:url . kgr:biofactoid.webapp a schema1:GraphicalInterface ; rdfs:label "Biofactoid Web Application" ; dcterms:description "Web application where authors create a digital profile of their article's molecular interactions and browse shared pathway documents." ; schema1:url . kgr:biogps.api a schema1:ProgrammingInterface ; rdfs:label "BioGPS API" ; dcterms:description "REST-style API for retrieving gene annotations and expression data (JSON/TSV responses)" ; schema1:url . kgr:biogps.downloads a schema1:Product ; rdfs:label "BioGPS Downloads" ; dcterms:description "Bulk annotation and expression data downloads (gene expression compendia, annotation tables)" ; schema1:url . kgr:biogps.faq a schema1:DocumentationProduct ; rdfs:label "BioGPS FAQ / Help" ; dcterms:description "FAQ and usage guidance including plugin system overview and data interpretation notes" ; schema1:url . kgr:biogps.portal a schema1:GraphicalInterface ; rdfs:label "BioGPS Portal" ; dcterms:description "Main BioGPS web portal with searchable gene pages, expression charts, and plugin system aggregating external annotations" ; schema1:url . kgr:biogrid.api a schema1:ProgrammingInterface ; rdfs:label "BioGRID REST API" ; dcterms:description "REST-based web service for programmatic access to BioGRID interaction, chemical association, PTM, and CRISPR (ORCS) data" ; schema1:url . kgr:biogrid.chemicals a schema1:GraphProduct ; rdfs:label "BIOGRID-CHEMICALS-LATEST.chemtab.zip" ; dcterms:description "Protein-chemical interactions for the entire BioGRID dataset. The file is a modified version of the BioGRID Tab 2.0 format, designed to add in columns for chemical specific annotation." ; schema1:url . kgr:biogrid.interactions.mitab a schema1:GraphProduct ; rdfs:label "BIOGRID-ALL-LATEST.mitab.zip" ; dcterms:description "Latest complete BioGRID interaction dataset in PSI-MI MITAB format (non-redundant and raw interactions combined)" ; schema1:url . kgr:biogrid.interactions.tab3 a schema1:GraphProduct ; rdfs:label "BIOGRID-ALL-LATEST.tab3.zip" ; dcterms:description "Latest complete BioGRID interaction dataset in TAB3 (tab-delimited) format" ; schema1:url . kgr:biogrid.ptm a schema1:GraphProduct ; rdfs:label "BIOGRID-PTMS-LATEST.ptm.zip" ; dcterms:description "Post-translational modification (PTM) site dataset curated by BioGRID" ; schema1:url . kgr:biogrid.web a schema1:GraphicalInterface ; rdfs:label "BioGRID Website" ; dcterms:description "Web interface for browsing, searching, and visualizing BioGRID interaction and project data" ; schema1:url . kgr:biohealth.sparql a schema1:ProgrammingInterface ; rdfs:label "Bio-Health KG SPARQL" ; dcterms:description "SPARQL endpoint for Bio-Health KG" ; schema1:url . kgr:biohealth.tpf a schema1:ProgrammingInterface ; rdfs:label "Bio-Health KG TPF" ; dcterms:description "Triple Pattern Fragments endpoint for Bio-Health KG" ; schema1:url . kgr:biolincc.faq a schema1:DocumentationProduct ; rdfs:label "BioLINCC FAQ" ; dcterms:description "Frequently asked questions on account registration, request requirements, costs, de-identification and redaction, request timelines and terms of use for BioLINCC materials." ; schema1:url . kgr:biolincc.portal a schema1:GraphicalInterface ; rdfs:label "BioLINCC Portal" ; dcterms:description "BioLINCC web portal for browsing NHLBI repository resources, registering an account (Login.gov, ID.me or NIH login) and submitting requests for study datasets, biospecimens and teaching datasets." ; schema1:url . kgr:biolincc.studies a schema1:GraphicalInterface ; rdfs:label "BioLINCC Study Catalog" ; dcterms:description "Searchable catalog of NHLBI studies with available datasets and/or biospecimens, filterable by available resources, collection type and condition, with per-study pages carrying study documents, data dictionaries and biospecimen counts. Access to the datasets and specimens themselves is controlled and requires an approved request and a Research Materials Distribution Agreement." ; schema1:url . kgr:biolincc.study-list a schema1:Product ; rdfs:label "BioLINCC Study List Export" ; dcterms:description "CSV export of the BioLINCC study search results, listing study name, acronym, available resources (study datasets, specimens or both) and collection type for each study (316 rows when checked on 2026-10-05)." ; schema1:url . kgr:biolincc.teaching-datasets a schema1:Product ; rdfs:label "BioLINCC Teaching and Public Use Datasets" ; dcterms:description "Teaching datasets derived from the Framingham Heart Study, the Digitalis Investigation Group trial and the Childhood Asthma Management Program, anonymized for biostatistics instruction and available free on request, plus public use datasets from the National Longitudinal Mortality Study. Teaching datasets are not suitable for publication." ; schema1:url . kgr:biolincc.users-guide a schema1:DocumentationProduct ; rdfs:label "BioLINCC Users Guide" ; dcterms:description "BioLINCC Users Guide describing how to search for and request study datasets and biospecimens, the review process, required IRB documentation and the Research Materials Distribution Agreement." ; schema1:url . kgr:biolink.docs a schema1:DocumentationProduct ; rdfs:label "Biolink Model Documentation" ; dcterms:description "Biolink Model Documentation" ; schema1:url . kgr:biolink.infores.docs a schema1:DocumentationProduct ; rdfs:label "Information Resource Registry Model Documentation" ; dcterms:description "Information Resource Registry Model documentation, including descriptions of the information resource (infores) registry itself." ; schema1:url . kgr:biolink.kg-bioportal a schema1:GraphProduct ; rdfs:label "BIOLINK KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Biolink Model (BIOLINK), produced by KG-Bioportal from the BioPortal submission. The archive contains BIOLINK_nodes.tsv and BIOLINK_edges.tsv." ; schema1:url . kgr:biolink.model.json a schema1:DataModelProduct ; rdfs:label "Biolink Model JSON release" ; dcterms:description "JSON schema release of Biolink Model" ; schema1:url . kgr:biolink.model.owl a schema1:DataModelProduct ; rdfs:label "Biolink Model OWL release" ; dcterms:description "OWL release of Biolink Model" ; schema1:url . kgr:biolink.model.proto a schema1:DataModelProduct ; rdfs:label "Biolink Model Protobuf release" ; dcterms:description "Protobuf release of Biolink Model" ; schema1:url . kgr:biolink.model.shacl a schema1:DataModelProduct ; rdfs:label "Biolink Model SHACL release" ; dcterms:description "SHACL release of Biolink Model" ; schema1:url . kgr:biolink.model.shex a schema1:DataModelProduct ; rdfs:label "Biolink Model ShEx release" ; dcterms:description "ShEx release of Biolink Model" ; schema1:url . kgr:biomarker.api a schema1:ProgrammingInterface ; rdfs:label "BiomarkerKB API" ; dcterms:description "Backend REST API that powers the BiomarkerKB web portal and provides programmatic access to biomarker records and the biomarker ID assignment system." ; schema1:url . kgr:biomarker.bkg.explorer a schema1:GraphicalInterface ; rdfs:label "BKG Explorer" ; dcterms:description "Web interface to explore and query the BiomarkerKB Knowledge Graph (BKG), the MaayanLab-built graph representation of BiomarkerKB data." ; schema1:url . kgr:biomarker.datamodel a schema1:DataModelProduct ; rdfs:label "BiomarkerKB Data Model" ; dcterms:description "The community-developed BiomarkerKB data model (data dictionary and derived JSON schema) that harmonizes biomarker knowledge across diverse biological data types, following the FDA-NIH BEST biomarker definition." ; schema1:url . kgr:biomarker.downloads a schema1:Product ; rdfs:label "BiomarkerKB Data Downloads" ; dcterms:description "Downloadable BiomarkerKB datasets, including per-condition datasets and full data dumps of curated biomarker-condition associations in JSON format." ; schema1:url . kgr:biomarker.obci a schema1:OntologyProduct ; rdfs:label "Ontology for Biomarkers of Clinical Interest (OBCI)" ; dcterms:description "The Ontology for Biomarkers of Clinical Interest (OBCI), which formally defines biomarkers for diseases, phenotypes, and effects used to structure BiomarkerKB." ; schema1:url . kgr:biomarker.portal a schema1:GraphicalInterface ; rdfs:label "BiomarkerKB Web Portal" ; dcterms:description "Public web portal for BiomarkerKB providing keyword search, filtering, data downloads, and interactive graph visualization of biomarker-condition associations." ; schema1:url . kgr:biomarker.sparql a schema1:ProgrammingInterface ; rdfs:label "BiomarkerKB KG SPARQL" ; dcterms:description "SPARQL endpoint for BiomarkerKB KG" ; schema1:url . kgr:biomarker.tpf a schema1:ProgrammingInterface ; rdfs:label "BiomarkerKB KG TPF" ; dcterms:description "Triple Pattern Fragments endpoint for BiomarkerKB KG" ; schema1:url . kgr:biomodels.api a schema1:ProgrammingInterface ; rdfs:label "BioModels REST API" ; dcterms:description "REST web services for searching BioModels, retrieving model metadata and files, and downloading models, documented with an interactive API reference." ; schema1:url . kgr:biomodels.code a schema1:ProcessProduct ; rdfs:label "BioModels Source Code" ; dcterms:description "Source code for the BioModels platform and related tools, including the COMBINE archive libraries, in the EBI-BioModels GitHub organization." ; schema1:url . kgr:biomodels.kg-bioportal a schema1:GraphProduct ; rdfs:label "BIOMODELS KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of BioModels Ontology (BIOMODELS), produced by KG-Bioportal from the BioPortal submission. The archive contains BIOMODELS_nodes.tsv and BIOMODELS_edges.tsv." ; schema1:url . kgr:biomodels.portal a schema1:GraphicalInterface ; rdfs:label "BioModels Web Portal" ; dcterms:description "Web interface for searching, browsing and downloading curated and non-curated computational models, with model files, annotations, curation notes and links to the reference publications." ; schema1:url . kgr:biomodels.rdf a schema1:Product ; rdfs:label "BioModels RDF Export" ; dcterms:description "RDF export of BioModels models, one RDF/XML file per model describing its SBML structure and annotations, in a tar.bz2 archive of about 28 MB, last generated on 2020-11-12." ; schema1:url . kgr:biomodels.release.sbml a schema1:Product ; rdfs:label "BioModels Database Release 31 SBML Files" ; dcterms:description "Last numbered BioModels Database release (release 31, June 2017) of the published models as SBML files in a tar.bz2 archive, about 184 MB compressed. Companion archives in the same directory hold the RDF annotations and all model files. Later models are only available through the portal and API." ; schema1:url . kgr:biomodels.user-guide a schema1:DocumentationProduct ; rdfs:label "BioModels User Guide" ; dcterms:description "BioModels user guide covering model submission, curation, annotation and use of the repository." ; schema1:url . kgr:biomuta.pipeline a schema1:ProcessProduct ; rdfs:label "BioMuta Data Release Pipeline" ; dcterms:description "BioMuta v5 data release pipeline for downloading, converting, and combining cancer mutation source files into BioMuta datasets." ; schema1:url . kgr:biomuta.portal a schema1:GraphicalInterface ; rdfs:label "BioMuta Web Portal" ; dcterms:description "Production BioMuta web interface hosted by the GW HIVE Lab for exploring cancer-associated mutation records." ; schema1:url . kgr:bioplanet.data a schema1:Product ; rdfs:label "BioPlanet Pathway Data" ; dcterms:description "Comprehensive integrated pathway resource that incorporates 1,658 distinct human pathways." ; schema1:url . kgr:bioregistry.api a schema1:ProgrammingInterface ; rdfs:label "Bioregistry REST API" ; dcterms:description "REST API for querying Bioregistry records, metaregistry entries, collections and CURIE resolution, documented with OpenAPI." ; schema1:url . kgr:bioregistry.context.jsonld a schema1:Product ; rdfs:label "Bioregistry JSON-LD Context" ; dcterms:description "JSON-LD context mapping each Bioregistry prefix to its preferred URI prefix, for expanding and contracting CURIEs. Other contexts (OBO, semantic web, extended prefix maps) are in the same exports directory." ; schema1:url . kgr:bioregistry.docs a schema1:DocumentationProduct ; rdfs:label "Bioregistry Documentation" ; dcterms:description "Bioregistry documentation, including the Python package reference and curation guidance." ; schema1:url . kgr:bioregistry.portal a schema1:GraphicalInterface ; rdfs:label "Bioregistry Web Site" ; dcterms:description "Bioregistry web site for searching and browsing prefixes, registries and collections and for resolving CURIEs to provider URLs." ; schema1:url . kgr:bioregistry.python a schema1:Product ; rdfs:label "Bioregistry Python Package" ; dcterms:description "Python package for loading and querying the Bioregistry, normalizing prefixes and CURIEs, and generating prefix maps. Released under the MIT License." ; schema1:url . kgr:bioregistry.rdf.jsonld a schema1:Product ; rdfs:label "Bioregistry RDF (JSON-LD)" ; dcterms:description "RDF export of the Bioregistry in JSON-LD." ; schema1:url . kgr:bioregistry.rdf.ttl a schema1:Product ; rdfs:label "Bioregistry RDF (Turtle)" ; dcterms:description "RDF export of the Bioregistry in Turtle, describing prefixes, providers, registries and collections with the Bioregistry RDF schema." ; schema1:url . kgr:bioregistry.registry.tsv a schema1:Product ; rdfs:label "Bioregistry TSV Export" ; dcterms:description "Flattened tabular Bioregistry export with one row per prefix." ; schema1:url . kgr:bioregistry.registry.yml a schema1:Product ; rdfs:label "Bioregistry YAML Export" ; dcterms:description "Full Bioregistry export as YAML, with the same content as the JSON export." ; schema1:url . kgr:biostudies.portal a schema1:GraphicalInterface ; rdfs:label "BioStudies Web Interface" ; dcterms:description "Web interface for searching and browsing BioStudies studies and collections, with study descriptions, links to associated data in other resources, and downloadable files." ; schema1:url . kgr:biostudies.submission a schema1:GraphicalInterface ; rdfs:label "BioStudies Submission Tool" ; dcterms:description "BioStudies submission tool for depositing study descriptions and data files." ; schema1:url . kgr:bioteque.bqsupports a schema1:ProcessProduct ; rdfs:label "BQsupports" ; dcterms:description "BQsupports is a tool to uncover biomedical evidence behind experimental paired data." ; schema1:url . kgr:bioteque.code a schema1:ProcessProduct ; rdfs:label "Bioteque code" ; dcterms:description "Scripts used to preprocess and accommodate biomedical datasets into the knowledge database behind the Bioteque repository" ; schema1:url . kgr:biothings-explorer.code a schema1:ProcessProduct ; rdfs:label "BioThings Explorer Source Code" ; dcterms:description "Source code workspace for the TRAPI implementation of BioThings Explorer, written in TypeScript and JavaScript." ; schema1:url . kgr:biothings-explorer.meta-kg a schema1:Product ; rdfs:label "BioThings Explorer Meta Knowledge Graph" ; dcterms:description "Meta knowledge graph of the subject category, predicate and object category combinations BTE can answer, as JSON (49 node categories and 3014 edge types when checked on 2026-10-04)." ; schema1:url . kgr:biothings-explorer.portal a schema1:GraphicalInterface ; rdfs:label "BioThings Explorer Website" ; dcterms:description "BioThings Explorer website with an overview of the query engine and links to its endpoints." ; schema1:url . kgr:biothings-explorer.x-bte-docs a schema1:DocumentationProduct ; rdfs:label "x-bte Extension Documentation" ; dcterms:description "Documentation of the x-bte extension to the OpenAPI specification, which annotates SmartAPI registry entries so that BTE can call them." ; schema1:url . kgr:biothings.api-specs a schema1:DocumentationProduct ; rdfs:label "BioThings API Specifications" ; dcterms:description "BioThings API specifications describing common endpoints, versioning, HTTP methods, formats, and shared request parameters for BioThings APIs." ; schema1:url . kgr:biothings.portal a schema1:GraphicalInterface ; rdfs:label "BioThings Homepage" ; dcterms:description "BioThings homepage describing the BioThings API ecosystem, major public APIs, SDK, Studio, and related community resources." ; schema1:url . kgr:biothings.sdk a schema1:Product ; rdfs:label "BioThings SDK" ; dcterms:description "Python-based BioThings SDK for aggregating biomedical annotations and exposing them as high-performance APIs." ; schema1:url . kgr:bitterdb.site a schema1:GraphicalInterface ; rdfs:label "BitterDB Website" ; dcterms:description "Web interface for browsing and searching bitter compounds and bitter taste receptors." ; schema1:url . kgr:bluesky.code a schema1:DocumentationProduct ; rdfs:label "BlueSky Pipeline Repository" ; dcterms:description "Source code and documentation for the BlueSky Pipeline, the BlueSky smoke modeling framework rearchitected as a pipeable collection of standalone modules for fire emissions, plume rise, and smoke dispersion." ; schema1:url . kgr:bluesky.portal a schema1:GraphicalInterface ; rdfs:label "AirFire Tools Portal" ; dcterms:description "AirFire Tools portal providing access to BlueSky Daily Run smoke forecasts, the BlueSky Daily Run Viewer, the BlueSky Playground, and related smoke and fire products." ; schema1:url . kgr:bmont.BMONT.owl a schema1:OntologyProduct ; rdfs:label "bmont.BMONT.owl" ; dcterms:description "Includes axioms linking to other ontologies, but no imports of those ontologies" ; schema1:url . kgr:bmont.kg-bioportal a schema1:GraphProduct ; rdfs:label "BMONT KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of The Biomarker Ontology (BMONT), produced by KG-Bioportal from the BioPortal submission. The archive contains BMONT_nodes.tsv and BMONT_edges.tsv." ; schema1:url . kgr:bootstrep.owl a schema1:OntologyProduct ; rdfs:label "Gene Regulation Ontology OWL edition" ; dcterms:description "Canonical OWL edition of the BOOTStrep Gene Regulation Ontology distributed via OBO PURL." ; schema1:url . kgr:brain-cell-kg.reports a schema1:Product ; rdfs:label "Brain_Cell_KG reports" ; dcterms:description "CSV reports generated by Cypher queries against the Brain_Cell_KG Neo4j graph, including a Basal Ganglia to Whole Mouse Brain mapping report and cell set and Mouse Brain Atlas symbol maps." ; schema1:url . kgr:brain-cell-kg.wmb-bg-kg a schema1:ProcessProduct ; rdfs:label "WMB_BG_KG repository (precursor)" ; dcterms:description "WMB_BG_KG, an earlier OBASK pipeline from the same group that combined the Whole Mouse Brain Ontology and HMBA Basal Ganglia Ontology with annotation transfer mappings between them. Its last update was in September 2025, and its annotation transfer work was carried forward into Brain_Cell_KG." ; schema1:url . kgr:brenda.docs a schema1:DocumentationProduct ; rdfs:label "BRENDA Help and Tutorials" ; dcterms:description "BRENDA help and tutorial resources covering support, usage guidance, FAQs, and tutorial videos." ; schema1:url . kgr:brenda.json a schema1:Product ; rdfs:label "BRENDA JSON Download" ; dcterms:description "Downloadable JSON files containing complete BRENDA enzyme data with schema documentation" ; schema1:url . kgr:brenda.soap a schema1:ProgrammingInterface ; rdfs:label "BRENDA SOAP API" ; dcterms:description "SOAP web service API providing programmatic access to enzyme data with methods for querying kinetic parameters, substrates, products, organisms, sequences, and other enzyme properties" ; schema1:url . kgr:brenda.sparql a schema1:ProgrammingInterface ; rdfs:label "BRENDA SPARQL Endpoint" ; dcterms:description "SPARQL endpoint for querying BRENDA knowledge graph with semantic web technologies" ; schema1:url . kgr:brenda.textfile a schema1:Product ; rdfs:label "BRENDA Textfile Download" ; dcterms:description "Downloadable text files containing complete BRENDA enzyme data in structured format" ; schema1:url . kgr:brenda.web a schema1:GraphicalInterface ; rdfs:label "BRENDA Web Portal" ; dcterms:description "Web-based search and browsing interface for enzyme data with advanced query capabilities including EC number classification, organism taxonomy, metabolic pathways, enzyme structures, and functional parameters" ; schema1:url . kgr:bridge2ai.portal a schema1:GraphicalInterface ; rdfs:label "Bridge2AI Portal" ; dcterms:description "Main Bridge2AI program portal providing access to program information, generated AI/ML-ready data sets, standards, and tools" ; schema1:url . kgr:broad-cdot a "Organization" ; rdfs:label "Broad Institute Center for the Development of Therapeutics (CDoT)" . kgr:broad-institute a "Organization" ; rdfs:label "Broad Institute" . kgr:bspo.kg-bioportal a schema1:GraphProduct ; rdfs:label "BSPO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Spatial Ontology (BSPO), produced by KG-Bioportal from the BioPortal submission. The archive contains BSPO_nodes.tsv and BSPO_edges.tsv." ; schema1:url . kgr:bspo.obo a schema1:OntologyProduct ; rdfs:label "bspo.obo" ; dcterms:description "Biological Spatial Ontology in OBO format" ; schema1:url . kgr:bspo.owl a schema1:OntologyProduct ; rdfs:label "bspo.owl" ; dcterms:description "Biological Spatial Ontology in OWL format" ; schema1:url . kgr:bto.json a schema1:OntologyProduct ; rdfs:label "bto.json" ; dcterms:description "BRENDA tissue / enzyme source in JSON format" ; schema1:url . kgr:bto.kg-bioportal a schema1:GraphProduct ; rdfs:label "BTO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of BRENDA Tissue and Enzyme Source Ontology (BTO), produced by KG-Bioportal from the BioPortal submission. The archive contains BTO_nodes.tsv and BTO_edges.tsv." ; schema1:url . kgr:bto.obo a schema1:OntologyProduct ; rdfs:label "bto.obo" ; dcterms:description "BRENDA tissue / enzyme source in OBO format" ; schema1:url . kgr:bto.owl a schema1:OntologyProduct ; rdfs:label "bto.owl" ; dcterms:description "BRENDA tissue / enzyme source in OWL format" ; schema1:url . kgr:bugsigdb.bugsigdbr a schema1:ProgrammingInterface ; rdfs:label "bugsigdbr" ; dcterms:description "bugsigdbr, an R/Bioconductor package for accessing published microbial signatures from BugSigDB" ; schema1:url . kgr:bugsigdb.full_dump a schema1:Product ; rdfs:label "BugSigDB full dump" ; dcterms:description "Hourly export of all complete BugSigDB studies, experiments and signatures as a single CSV file, with signature identifiers added" ; schema1:url . kgr:bugsigdb.gmt a schema1:Product ; rdfs:label "BugSigDB signature GMT files" ; dcterms:description "Hourly exports of BugSigDB signatures as GMT gene-set files, one file per combination of taxonomic level (genus, species, mixed) and identifier type (NCBI Taxonomy, MetaPhlAn, taxon name)" ; schema1:url . kgr:bugsigdb.site a schema1:GraphicalInterface ; rdfs:label "BugSigDB web site" ; dcterms:description "Semantic MediaWiki site for browsing, searching and curating published microbial signatures" ; schema1:url . kgr:bugsigdb.zenodo a schema1:Product ; rdfs:label "BugSigDB stable releases" ; dcterms:description "Periodic manually reviewed stable data releases of BugSigDB on Zenodo, under the concept DOI 10.5281/zenodo.5606165" ; schema1:url . kgr:bv-brc.api a schema1:ProgrammingInterface ; rdfs:label "BV-BRC Data API" ; dcterms:description "Application Programming Interface for programmatic access to BV-BRC data" ; schema1:url . kgr:bv-brc.cli a schema1:ProcessProduct ; rdfs:label "BV-BRC CLI" ; dcterms:description "Command Line Interface for batch access to BV-BRC data and services" ; schema1:url . kgr:bv-brc.ftp a schema1:Product ; rdfs:label "BV-BRC FTP" ; dcterms:description "FTP server providing direct access to BV-BRC data files" ; schema1:url . kgr:bv-brc.site a schema1:GraphicalInterface ; rdfs:label "BV-BRC Web Interface" ; dcterms:description "Web-based interface providing access to BV-BRC data, tools, and services" ; schema1:url . kgr:cabi-isc.portal a schema1:GraphicalInterface ; rdfs:label "CABI Invasive Species Compendium Portal" ; dcterms:description "Web portal for the CABI Invasive Species Compendium providing species datasheets, distribution and host information, and bibliographic references on invasive species." ; schema1:url . kgr:cadd.api a schema1:ProgrammingInterface ; rdfs:label "CADD API" ; dcterms:description "REST API returning CADD raw and PHRED scores as JSON for a single position, a specific variant, or a genomic range, for a chosen CADD version and genome build." ; schema1:url . kgr:cadd.docs a schema1:DocumentationProduct ; rdfs:label "CADD Information" ; dcterms:description "CADD information pages describing the method, annotations, score interpretation and how to cite CADD." ; schema1:url . kgr:cadd.downloads a schema1:Product ; rdfs:label "CADD Downloads" ; dcterms:description "Download page listing all CADD releases (v1.0 to v1.7) with precomputed score files, scored variant sets, annotation files for offline scoring and release notes, mirrored at the University of Washington and the Berlin Institute of Health." ; schema1:url . kgr:cadd.score a schema1:ProcessProduct ; rdfs:label "CADD Scoring Web Service" ; dcterms:description "Web service for scoring uploaded VCF files of SNVs, MNVs and indels with a selected CADD version and genome build." ; schema1:url . kgr:cadd.scripts a schema1:ProcessProduct ; rdfs:label "CADD-scripts" ; dcterms:description "CADD-scripts, a Snakemake-based pipeline for scoring variants offline with CADD, including annotation and model files for each release." ; schema1:url . kgr:cadd.website a schema1:GraphicalInterface ; rdfs:label "CADD Website" ; dcterms:description "CADD website with single-variant and range lookup of scores, news, release notes and links to related resources." ; schema1:url . kgr:cam-kp.api a schema1:ProgrammingInterface ; rdfs:label "CAM-KP REST API" ; dcterms:description "TRAPI-compliant REST API for programmatic access to causal knowledge graphs supporting Translator ecosystem integration and federated querying" ; schema1:url . kgr:cam-kp.automat a schema1:GraphicalInterface ; rdfs:label "CAM-KP on Automat" ; dcterms:description "Interactive knowledge provider interface within RENCI's Automat platform for discovering and integrating CAM-KP with other biomedical data sources" ; schema1:url . kgr:cam-kp.documentation a schema1:DocumentationProduct ; rdfs:label "CAM-KP Documentation" ; dcterms:description "Comprehensive API documentation, SPARQL endpoint documentation, and developer guides for querying and integrating CAM-KP" ; schema1:url . kgr:cam-kp.sparql a schema1:ProgrammingInterface ; rdfs:label "CAM-KP SPARQL Endpoint" ; dcterms:description "SPARQL endpoint for complex semantic queries on the RDF triplestore containing causal activity models, ontologies, and integrated biomedical knowledge" ; schema1:url . kgr:campbell-biology.openlibrary a schema1:Product ; rdfs:label "Campbell Biology (Open Library record)" ; dcterms:description "Bibliographic catalog record for the Campbell Biology textbook." ; schema1:url . kgr:cancer-genome-interpreter.api a schema1:ProgrammingInterface ; rdfs:label "Cancer Genome Interpreter REST API" ; dcterms:description "REST API for programmatic access to annotation and interpretation endpoints" ; schema1:url . kgr:cancer-genome-interpreter.portal a schema1:GraphicalInterface ; rdfs:label "Cancer Genome Interpreter Portal" ; dcterms:description "Web portal for submitting variant lists, interpreting oncogenicity, and exploring biomarkers" ; schema1:url . kgr:cancer-registry-kg.api a schema1:ProgrammingInterface ; rdfs:label "Cancer Registry Query API" ; dcterms:description "Python-based API using RDFLib for parameterized SPARQL query execution against cancer registry knowledge graph. Provides template-based queries for hypothesis generation, treatment sequence analysis, and multi-dataset integration without requiring users to write SPARQL directly." ; schema1:url . kgr:cancer-registry-kg.visualization a schema1:GraphicalInterface ; rdfs:label "Gephi-Based KG Visualization" ; dcterms:description "Interactive graph visualization service using Gephi with Semantic Web Importer plugin to query Virtuoso SPARQL endpoint. Provides high-level and low-level visualizations with graph algorithms (PageRank, connected components, modularity) for pattern discovery and anomaly detection." ; schema1:url . kgr:canvas.backbone a schema1:Product ; rdfs:label "CanVAS backbone genotypes" ; dcterms:description "The CanVAS backbone genotype set, comprising sites genotyped in at least 90% of samples prior to imputation, as a PLINK binary fileset in CanFam4 coordinates." ; schema1:url . kgr:canvas.metadata a schema1:Product ; rdfs:label "CanVAS sample metadata" ; dcterms:description "Sample-level metadata for the CanVAS cohort, including breed assignment and contributing study for each dog." ; schema1:url . kgr:cardiokg.embeddings a schema1:Product ; rdfs:label "CardioKG generated embeddings" ; dcterms:description "Generated CardioKG embeddings for gene-disease and medication-disease association prediction tasks. The GitHub repository is no longer available; these files are inside the archived Zenodo snapshot." ; schema1:url . kgr:cardiokg.workflow a schema1:ProcessProduct ; rdfs:label "CardioKG analysis workflow" ; dcterms:description "Analysis notebooks and scripts for CardioKG graph construction, PageRank importance analysis, gene-disease association prediction, and drug repurposing. The GitHub repository is no longer available; these files are inside the archived Zenodo snapshot." ; schema1:url . kgr:cardiokg.zenodo-archive a schema1:Product ; rdfs:label "CardioKG Zenodo archive" ; dcterms:description "Archived CardioKG repository release on Zenodo." ; schema1:url . kgr:cargo.website a schema1:GraphicalInterface ; rdfs:label "crates.io website" ; dcterms:description "Web interface and public registry for browsing and retrieving Rust crates" ; schema1:url . kgr:caro.kg-bioportal a schema1:GraphProduct ; rdfs:label "CARO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Common Anatomy Reference Ontology (CARO), produced by KG-Bioportal from the BioPortal submission. The archive contains CARO_nodes.tsv and CARO_edges.tsv." ; schema1:url . kgr:caro.owl a schema1:OntologyProduct ; rdfs:label "caro.owl" ; dcterms:description "Common Anatomy Reference Ontology in OWL format" ; schema1:url . kgr:catalogue-of-life.api a schema1:ProgrammingInterface ; rdfs:label "Catalogue of Life API" ; dcterms:description "RESTful JSON API providing programmatic access to species information, taxonomic names, classification hierarchies, and species identifiers with multiple endpoints" ; schema1:url . kgr:catalogue-of-life.checklistbank a schema1:Product ; rdfs:label "ChecklistBank Repository" ; dcterms:description "ChecklistBank repository infrastructure for publishing, discovery, and management of taxonomic datasets with data standardization to ColDP format and quality control workflows" ; schema1:url . kgr:catalogue-of-life.documentation a schema1:DocumentationProduct ; rdfs:label "Catalogue of Life Documentation" ; dcterms:description "Comprehensive documentation including API specifications, data format standards (ColDP, DwC-A), usage guides, citation guidelines, and taxonomic contribution workflows" ; schema1:url . kgr:catalogue-of-life.web a schema1:GraphicalInterface ; rdfs:label "Catalogue of Life Web Portal" ; dcterms:description "Interactive web portal for browsing hierarchical taxonomy from kingdom level through infraspecific ranks with expandable taxonomy tree and full-text search for species names and synonyms" ; schema1:url . kgr:ccf.kg-bioportal a schema1:GraphProduct ; rdfs:label "CCF KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Human Reference Atlas Common Coordinate Framework Ontology (CCF), produced by KG-Bioportal from the BioPortal submission. The archive contains CCF_nodes.tsv and CCF_edges.tsv." ; schema1:url . kgr:ccf.owl a schema1:OntologyProduct ; rdfs:label "CCF Ontology (OWL)" ; dcterms:description "The Common Coordinate Framework (CCF) Ontology in OWL (RDF/XML) format, integrating ASCT+B anatomical structures, cell types, and biomarkers with the CCF spatial model for the Human Reference Atlas." ; schema1:url . kgr:ccle.datasets a schema1:Product ; rdfs:label "CCLE Datasets" ; dcterms:description "CCLE datasets page linking processed genetic, transcriptomic, proteomic, and metabolomic releases and related DepMap resources." ; schema1:url . kgr:ccle.docs a schema1:DocumentationProduct ; rdfs:label "CCLE Project Site" ; dcterms:description "CCLE project site describing the Cancer Cell Line Encyclopedia collaboration, motivations, and project phases." ; schema1:url . kgr:ccre.screen a schema1:GraphicalInterface ; rdfs:label "SCREEN Portal" ; dcterms:description "SCREEN (Search Candidate cis-Regulatory Elements by ENCODE) web portal for browsing and searching the registry of candidate cis-Regulatory Elements in the human and mouse genomes." ; schema1:url . kgr:cdao.kg-bioportal a schema1:GraphProduct ; rdfs:label "CDAO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Comparative Data Analysis Ontology (CDAO), produced by KG-Bioportal from the BioPortal submission. The archive contains CDAO_nodes.tsv and CDAO_edges.tsv." ; schema1:url . kgr:cdao.owl a schema1:OntologyProduct ; rdfs:label "cdao.owl" ; dcterms:description "Comparative Data Analysis Ontology in OWL format" ; schema1:url . kgr:cdc-places.datasets a schema1:Product ; rdfs:label "CDC PLACES Open Datasets" ; dcterms:description "CDC PLACES datasets published on the data.cdc.gov open data platform, providing downloadable model-based estimates of health measures by county, place, census tract, and ZIP Code Tabulation Area as CSV, JSON, and other file formats accessible via the Socrata Open Data API." ; schema1:url . kgr:cdc-places.portal a schema1:GraphicalInterface ; rdfs:label "CDC PLACES Portal" ; dcterms:description "CDC PLACES portal providing interactive maps, data visualizations, and access to model-based small-area estimates of health measures for US counties, places, census tracts, and ZIP Code Tabulation Areas." ; schema1:url . kgr:cdc-svi.data a schema1:Product ; rdfs:label "SVI Data and Documentation Download" ; dcterms:description "Download page for SVI datasets and documentation, providing census-tract and county social vulnerability data (CSV and geospatial formats) for multiple years including 2000, 2010, 2014, 2016, 2018, 2020, and 2022." ; schema1:url . kgr:cdc-svi.map a schema1:GraphicalInterface ; rdfs:label "SVI Interactive Map" ; dcterms:description "Web-based interactive map for exploring SVI scores and underlying census variables by census tract and county." ; schema1:url . kgr:cdd.cdsearch a schema1:GraphicalInterface ; rdfs:label "CD-Search" ; dcterms:description "CD-Search tool for identifying conserved domains in a protein query sequence." ; schema1:url . kgr:cdd.downloads a schema1:Product ; rdfs:label "CDD Downloads" ; dcterms:description "FTP archive of CDD domain models, alignments, and annotation data." ; schema1:url . kgr:cdd.site a schema1:GraphicalInterface ; rdfs:label "CDD Website" ; dcterms:description "Web interface for browsing and searching conserved protein domain models." ; schema1:url . kgr:cdiscvocab.adam a schema1:Product ; rdfs:label "ADaM Controlled Terminology" ; dcterms:description "Analysis Data Model controlled terminology for efficient generation, replication, review, and submission of analysis results from clinical trial data." ; schema1:url . kgr:cdiscvocab.browser a schema1:GraphicalInterface ; rdfs:label "NCI EVS CDISC Terminology Browser" ; dcterms:description "NCI Enterprise Vocabulary Services browser for exploring and searching CDISC Controlled Terminology concepts within NCI Thesaurus." ; schema1:url . kgr:cdiscvocab.cdash a schema1:Product ; rdfs:label "CDASH Controlled Terminology" ; dcterms:description "Clinical Data Acquisition Standards Harmonization controlled terminology for consistent data collection across research studies. A subset of SDTM terminology." ; schema1:url . kgr:cdiscvocab.ddf a schema1:Product ; rdfs:label "DDF Controlled Terminology" ; dcterms:description "Digital Data Flow controlled terminology for study definition reference architecture and standardized study definitions repository development." ; schema1:url . kgr:cdiscvocab.definexml a schema1:Product ; rdfs:label "Define-XML Controlled Terminology" ; dcterms:description "Define-XML controlled terminology providing enumeration values for the CDISC Define-XML data exchange standard." ; schema1:url . kgr:cdiscvocab.glossary a schema1:Product ; rdfs:label "CDISC Glossary Terminology" ; dcterms:description "CDISC Glossary controlled terminology harmonizing definitions, acronyms, abbreviations, and initials across CDISC-managed standards initiatives." ; schema1:url . kgr:cdiscvocab.mrct a schema1:Product ; rdfs:label "MRCT Glossary Terminology" ; dcterms:description "MRCT Center Clinical Research Glossary controlled terminology with plain language definitions for enhancing health literacy and participant communications." ; schema1:url . kgr:cdiscvocab.protocol a schema1:Product ; rdfs:label "Protocol Controlled Terminology" ; dcterms:description "Protocol Representation Model controlled terminology for commonly used words and phrases in clinical research protocols, supporting PRM and CTR-XML standards." ; schema1:url . kgr:cdiscvocab.sdtm a schema1:Product ; rdfs:label "SDTM Controlled Terminology" ; dcterms:description "Study Data Tabulation Model controlled terminology for clinical research data tabulation and FDA/PMDA regulatory submissions. Includes CDISC questionnaires, ratings, and scales terminology." ; schema1:url . kgr:cdiscvocab.send a schema1:Product ; rdfs:label "SEND Controlled Terminology" ; dcterms:description "Standard for Exchange of Nonclinical Data controlled terminology for preclinical study data interchange and regulatory submissions to FDA." ; schema1:url . kgr:cdiscvocab.tmf a schema1:Product ; rdfs:label "TMF Controlled Terminology" ; dcterms:description "Trial Master File controlled terminology for standardized structure, nomenclature, and metadata for electronic trial master file content." ; schema1:url . kgr:cdno.kg-bioportal a schema1:GraphProduct ; rdfs:label "CDNO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Compositional Dietary Nutrition Ontology (CDNO), produced by KG-Bioportal from the BioPortal submission. The archive contains CDNO_nodes.tsv and CDNO_edges.tsv." ; schema1:url . kgr:cdno.obo a schema1:OntologyProduct ; rdfs:label "cdno.obo" ; dcterms:description "Compositional Dietary Nutrition Ontology in OBO format" ; schema1:url . kgr:cdno.owl a schema1:OntologyProduct ; rdfs:label "cdno.owl" ; dcterms:description "Compositional Dietary Nutrition Ontology in OWL format" ; schema1:url . kgr:cebs.api a schema1:ProgrammingInterface ; rdfs:label "CEBS API" ; dcterms:description "Programmatic API access to CEBS data, documented by the CEBS API user help" ; schema1:url . kgr:cebs.citation-guide a schema1:DocumentationProduct ; rdfs:label "Citing CEBS" ; dcterms:description "CEBS citation guidance for referencing the database and study URLs" ; schema1:url . kgr:cebs.data a schema1:Product ; rdfs:label "CEBS Study Data" ; dcterms:description "Toxicology study data from NTP and other programs" ; schema1:url . kgr:cebs.web a schema1:GraphicalInterface ; rdfs:label "CEBS Search Interface" ; dcterms:description "Web interface for searching and browsing CEBS toxicology data" ; schema1:url . kgr:cellcollective.learn a schema1:GraphicalInterface ; rdfs:label "Cell Collective Learn" ; dcterms:description "Learning environment of Cell Collective, offering interactive model-based lessons for biology education." ; schema1:url . kgr:cellcollective.portal a schema1:GraphicalInterface ; rdfs:label "Cell Collective Platform" ; dcterms:description "Cell Collective web platform for browsing the public model library and building, simulating and analysing logical models of biological networks." ; schema1:url . kgr:cellcollective.research a schema1:GraphicalInterface ; rdfs:label "Cell Collective Research" ; dcterms:description "Research environment of Cell Collective, with the published model library and export of individual models as SBML-qual, Boolean expressions, truth tables, GML or interaction matrices. Exports are generated per model through the web application; there is no documented bulk download or public API." ; schema1:url . kgr:cellmarker.act a schema1:GraphicalInterface ; rdfs:label "Cell Annotation Tool" ; dcterms:description "CellMarker 2.0 annotation tool for assigning cell types using curated marker genes" ; schema1:url . kgr:cellmarker.all a schema1:Product ; rdfs:label "All Cell Markers" ; dcterms:description "Combined CellMarker 2.0 marker dataset for human and mouse in spreadsheet format" ; schema1:url . kgr:cellmarker.human a schema1:Product ; rdfs:label "Human Cell Markers" ; dcterms:description "Human CellMarker 2.0 marker dataset in spreadsheet format" ; schema1:url . kgr:cellmarker.mouse a schema1:Product ; rdfs:label "Mouse Cell Markers" ; dcterms:description "Mouse CellMarker 2.0 marker dataset in spreadsheet format" ; schema1:url . kgr:cellmarker.singlecell a schema1:Product ; rdfs:label "Single Cell Markers" ; dcterms:description "CellMarker 2.0 marker dataset derived from single-cell sequencing studies in human and mouse" ; schema1:url . kgr:cellminer.dataset-metadata a schema1:DocumentationProduct ; rdfs:label "CellMiner Dataset Metadata" ; dcterms:description "CellMiner dataset metadata page describing each drug, DNA, RNA and protein dataset, its platform, principal collaborators and processing method." ; schema1:url . kgr:cellminer.rcellminer a schema1:ProgrammingInterface ; rdfs:label "rcellminer R Package" ; dcterms:description "rcellminer Bioconductor package providing R functions to access, visualize and analyze NCI-60 molecular profiles and drug response data from CellMiner." ; schema1:url . kgr:cellminer.rcellminerdata a schema1:Product ; rdfs:label "rcellminerData R Package" ; dcterms:description "rcellminerData Bioconductor experiment data package containing the CellMiner NCI-60 molecular profiles and drug activity data used by rcellminer." ; schema1:url . kgr:cellminer.release-notes a schema1:DocumentationProduct ; rdfs:label "CellMiner Release Notes" ; dcterms:description "CellMiner release notes describing data and feature changes across CellMiner versions." ; schema1:url . kgr:cellml.dtd-1.0 a schema1:DataModelProduct ; rdfs:label "CellML 1.0 DTD" ; dcterms:description "Document type definition (DTD) corresponding to the syntax rules of the 10 August 2001 CellML 1.0 specification." ; schema1:url . kgr:cellml.dtd-1.1 a schema1:DataModelProduct ; rdfs:label "CellML 1.1 DTD" ; dcterms:description "Document type definition (DTD) corresponding to the syntax rules of the CellML 1.1 specification." ; schema1:url . kgr:cellml.libcellml a schema1:ProcessProduct ; rdfs:label "libCellML" ; dcterms:description "libCellML, a C++ library with Python bindings for creating, parsing, validating, analysing and printing CellML 2.0 models and for generating C and Python code from them. Licensed under Apache 2.0." ; schema1:url . kgr:cellml.libcellml-docs a schema1:DocumentationProduct ; rdfs:label "libCellML Documentation" ; dcterms:description "libCellML website with user documentation, tutorials, API reference and installation instructions." ; schema1:url . kgr:cellml.spec-1.0 a schema1:DocumentationProduct ; rdfs:label "CellML 1.0 Specification" ; dcterms:description "CellML 1.0 specification, the original recommendation of 10 August 2001." ; schema1:url . kgr:cellml.spec-1.1 a schema1:DocumentationProduct ; rdfs:label "CellML 1.1 Specification" ; dcterms:description "CellML 1.1 specification (6 November 2002, frozen 28 February 2006), which added model imports to CellML 1.0, with its errata." ; schema1:url . kgr:cellml.spec-2.0 a schema1:DocumentationProduct ; rdfs:label "CellML 2.0 Normative Specification" ; dcterms:description "Normative CellML 2.0 specification, the formal set of rules defining a valid CellML 2.0 model encoding, provided as a PDF. Previous release 2.0.0 and the 2017 drafts are linked from the CellML 2.0 specification page." ; schema1:url . kgr:cellml.spec-2.0-informative a schema1:DocumentationProduct ; rdfs:label "CellML 2.0 Informative Specification" ; dcterms:description "Informative rendering of the CellML 2.0 specification, which extends the normative rules with explanations, examples and notes on how each rule maps to the libCellML data model and API." ; schema1:url . kgr:cellml.specifications a schema1:DocumentationProduct ; rdfs:label "CellML Specifications Index" ; dcterms:description "CellML website pages listing the CellML specifications and software tools that support CellML." ; schema1:url . kgr:cellmodelpassports.api a schema1:ProgrammingInterface ; rdfs:label "Cell Model Passports API" ; dcterms:description "JSON:API (v1.0) REST API for models, genes and datasets such as mutations, with Swagger documentation." ; schema1:url . kgr:cellmodelpassports.downloads a schema1:Product ; rdfs:label "Cell Model Passports Downloads" ; dcterms:description "Downloads page listing current and archived bulk files of model annotation and processed genomic and functional datasets (model lists, mutations, copy number, expression, proteomics, CRISPR screens, drug response)." ; schema1:url . kgr:cellmodelpassports.mutations_all a schema1:Product ; rdfs:label "Cell Model Passports All Mutations" ; dcterms:description "Combined somatic mutation calls from whole-exome, whole-genome and targeted sequencing of all models." ; schema1:url . kgr:cellmodelpassports.portal a schema1:GraphicalInterface ; rdfs:label "Cell Model Passports Web Portal" ; dcterms:description "Cell Model Passports web portal for searching and browsing cancer cell line and organoid models, their clinical annotation and available genomic and functional datasets." ; schema1:url . kgr:cellmodelpassports.proteomics a schema1:Product ; rdfs:label "Cell Model Passports Proteomics" ; dcterms:description "Processed protein abundance (proteomics) data for cancer cell line models." ; schema1:url . kgr:cellosaurus.api.rest a schema1:ProgrammingInterface ; rdfs:label "Cellosaurus API" ; dcterms:description "RESTful API for programmatic access to Cellosaurus data" ; schema1:url . kgr:cellosaurus.api.sparql a schema1:ProgrammingInterface ; rdfs:label "Cellosaurus SPARQL Endpoint" ; dcterms:description "SPARQL endpoint for querying Cellosaurus RDF data" ; schema1:url . kgr:cellosaurus.clastr a schema1:ProcessProduct ; rdfs:label "CLASTR STR Similarity Search" ; dcterms:description "CLASTR tool for STR similarity search across cell lines" ; schema1:url . kgr:cellosaurus.site a schema1:GraphicalInterface ; rdfs:label "Cellosaurus Web Interface" ; dcterms:description "Web interface for searching and exploring Cellosaurus data" ; schema1:url . kgr:cellosaurus.txt a schema1:Product ; rdfs:label "Cellosaurus Text" ; dcterms:description "Complete Cellosaurus data in flat text format" ; schema1:url . kgr:cellosaurus.xml a schema1:Product ; rdfs:label "Cellosaurus XML" ; dcterms:description "Cellosaurus data in XML format" ; schema1:url . kgr:cellosaurus.xrefs a schema1:MappingProduct ; rdfs:label "Cellosaurus Cross-references" ; dcterms:description "Cellosaurus cross-references in tab-delimited format" ; schema1:url . kgr:cellphonedb.database a schema1:MappingProduct ; rdfs:label "CellPhoneDB Interactions Database" ; dcterms:description "Curated database of human receptors, ligands and their interactions, including heteromeric complex composition, distributed as downloadable files for use with the CellPhoneDB analysis package." ; schema1:url . kgr:cellphonedb.docs a schema1:DocumentationProduct ; rdfs:label "CellPhoneDB Repository and Documentation" ; dcterms:description "Source code, tutorials, and documentation for the CellPhoneDB database and analysis package." ; schema1:url . kgr:cellphonedb.package a schema1:ProcessProduct ; rdfs:label "CellPhoneDB Python Package" ; dcterms:description "Python package that interrogates single-cell transcriptomics data against the CellPhoneDB database to statistically infer enriched ligand-receptor interactions between cell types." ; schema1:url . kgr:cellphonedb.web a schema1:GraphicalInterface ; rdfs:label "CellPhoneDB Web Interface" ; dcterms:description "Web interface for browsing and searching CellPhoneDB receptors, ligands and their curated interactions." ; schema1:url . kgr:cellxgene.census a schema1:ProgrammingInterface ; rdfs:label "CZ CELLxGENE Census" ; dcterms:description "Documentation and entry point for the CELLxGENE Census API and data object used to query standardized single-cell expression data in R and Python." ; schema1:url . kgr:cellxgene.datasets a schema1:GraphicalInterface ; rdfs:label "CZ CELLxGENE Datasets Browser" ; dcterms:description "Search and download interface for public curated collections and datasets available through CZ CELLxGENE Discover." ; schema1:url . kgr:cellxgene.docs a schema1:DocumentationProduct ; rdfs:label "CZ CELLxGENE Documentation" ; dcterms:description "Official documentation for CZ CELLxGENE Discover, Explorer, Gene Expression, and Annotate workflows." ; schema1:url . kgr:cellxgene.portal a schema1:GraphicalInterface ; rdfs:label "CZ CELLxGENE Discover" ; dcterms:description "Main CZ CELLxGENE Discover portal for browsing public single-cell collections, datasets, gene expression views, and analysis tools." ; schema1:url . kgr:ceph.kg-bioportal a schema1:GraphProduct ; rdfs:label "CEPH KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Cephalopod Ontology (CEPH), produced by KG-Bioportal from the BioPortal submission. The archive contains CEPH_nodes.tsv and CEPH_edges.tsv." ; schema1:url . kgr:ceph.obo a schema1:OntologyProduct ; rdfs:label "oboformat edition" ; dcterms:description "oboformat edition" ; schema1:url . kgr:ceph.owl a schema1:OntologyProduct ; rdfs:label "main version" ; dcterms:description "main version" ; schema1:url . kgr:cfde-gse.api a schema1:ProgrammingInterface ; rdfs:label "CFDE-GSE API" ; dcterms:description "RESTful API for programmatic access to Common Fund gene set collections and enrichment analysis" ; schema1:url . kgr:cfde-gse.connection-explorer a schema1:GraphicalInterface ; rdfs:label "CFDE-GSE Connection Explorer" ; dcterms:description "Interactive graph traversal interface for exploring connections between genes and CFDE program-specific signatures" ; schema1:url . kgr:cfde-gse.edges-csv a schema1:Product ; rdfs:label "CFDE-GSE Edge CSV Snapshot" ; dcterms:description "Downloadable edge/triple CSV snapshots from the CFDE-GSE downloads page using source.relation.target edge files" ; schema1:url . kgr:cfde-gse.nodes-csv a schema1:Product ; rdfs:label "CFDE-GSE Node CSV Snapshot" ; dcterms:description "Downloadable node metadata CSV snapshots from the CFDE-GSE downloads page (for example, Gene.nodes.csv and program-specific node tables)" ; schema1:url . kgr:cfde-gse.portal a schema1:GraphicalInterface ; rdfs:label "CFDE Gene Set Enrichment Portal" ; dcterms:description "Interactive web interface for cross-program gene set enrichment analysis across Common Fund datasets" ; schema1:url . kgr:cgc.strain-list a schema1:Product ; rdfs:label "CGC Strain List" ; dcterms:description "Plain-text dump of all CGC strain records in a key/value record layout, with fields for strain, species, genotype, description, mutagen, outcrossed, made by and received." ; schema1:url . kgr:cgc.strain-search a schema1:GraphicalInterface ; rdfs:label "CGC Strain Search" ; dcterms:description "Web search over CGC strains by genotype, description, mutagen and maker, with strain pages and CSV export of full search results." ; schema1:url . kgr:cgi-team a "Organization" ; rdfs:label "Cancer Genome Interpreter Team" . kgr:cgnc.genes a schema1:Product ; rdfs:label "CGNC Genes" ; dcterms:description "CGNC public downloads page for standardized chicken gene nomenclature data and related consortium resources." ; schema1:url . kgr:cgnc.portal a schema1:GraphicalInterface ; rdfs:label "CGNC Portal" ; dcterms:description "Official Chicken Gene Nomenclature Consortium portal for searching gene symbols, guidelines, downloads, and curation resources." ; schema1:url . kgr:chea.api a schema1:ProgrammingInterface ; rdfs:label "ChEA API" ; dcterms:description "ChEA3 enrichment API for submitting gene sets and retrieving transcription factor ranking results" ; schema1:url . kgr:chea.docker a schema1:Product ; rdfs:label "ChEA3 Docker Image" ; dcterms:description "Docker image for running the ChEA3 web application locally" ; schema1:url . kgr:chea.portal a schema1:GraphicalInterface ; rdfs:label "ChEA Explorer" ; dcterms:description "Public ChEA3 web interface for transcription factor enrichment analysis and result visualization" ; schema1:url . kgr:chebi.chebi_core.obo a schema1:OntologyProduct ; rdfs:label "chebi_core, no xrefs" ; dcterms:description "chebi_core, no xrefs" ; schema1:url . kgr:chebi.chebi_lite.obo a schema1:OntologyProduct ; rdfs:label "chebi_lite, no syns or xrefs" ; dcterms:description "chebi_lite, no syns or xrefs" ; schema1:url . kgr:chebi.json a schema1:OntologyProduct ; rdfs:label "chebi.json" ; dcterms:description "Chemical Entities of Biological Interest in JSON format" ; schema1:url . kgr:chebi.obo a schema1:OntologyProduct ; rdfs:label "chebi.obo" ; dcterms:description "Chemical Entities of Biological Interest in OBO format" ; schema1:url . kgr:chebi.owl a schema1:OntologyProduct ; rdfs:label "chebi.owl" ; dcterms:description "Chemical Entities of Biological Interest in OWL format" ; schema1:url . kgr:chebi.owl.gz a schema1:OntologyProduct ; rdfs:label "chebi, compressed owl" ; dcterms:description "chebi, compressed owl" ; schema1:url . kgr:chembank.publication a schema1:DocumentationProduct ; rdfs:label "ChemBank NAR publication" ; dcterms:description "Primary publication describing ChemBank, its data model, and its cheminformatics tools (Nucleic Acids Research Database issue)." ; schema1:url . kgr:chembank.wayback a schema1:DocumentationProduct ; rdfs:label "ChemBank homepage (Wayback Machine archive)" ; dcterms:description "Archived snapshot of the former ChemBank homepage in the Internet Archive Wayback Machine, preserved because the original site (chembank.broadinstitute.org) is defunct." ; schema1:url . kgr:chembl.api a schema1:ProgrammingInterface ; rdfs:label "ChEMBL API" ; dcterms:description "RESTful API for accessing ChEMBL data programmatically" ; schema1:url . kgr:chembl.mysql a schema1:Product ; rdfs:label "ChEMBL MySQL" ; dcterms:description "MySQL database dump of the complete ChEMBL database" ; schema1:url . kgr:chembl.postgres a schema1:Product ; rdfs:label "ChEMBL PostgreSQL" ; dcterms:description "PostgreSQL database dump of the complete ChEMBL database" ; schema1:url . kgr:chembl.rdf a schema1:Product ; rdfs:label "ChEMBL RDF" ; dcterms:description "RDF version of the ChEMBL database" ; schema1:url . kgr:chembl.sdf a schema1:Product ; rdfs:label "ChEMBL SDF" ; dcterms:description "Structure data files for all chemical compounds in ChEMBL" ; schema1:url . kgr:chembl.site a schema1:GraphicalInterface ; rdfs:label "ChEMBL Web Interface" ; dcterms:description "Web interface for searching and exploring ChEMBL data" ; schema1:url . kgr:chembl.sparql a schema1:Product ; rdfs:label "ChEMBL RDF Download" ; dcterms:description "RDF (Turtle) download of the ChEMBL data via the EBI ChEMBL-RDF FTP archive. The former EBI RDF Platform SPARQL endpoint has been retired, so ChEMBL RDF is now distributed as downloadable Turtle dumps." ; schema1:url . kgr:chembl.sqlite a schema1:Product ; rdfs:label "ChEMBL SQLite" ; dcterms:description "SQLite database file containing the complete ChEMBL database" ; schema1:url . kgr:chemicalchecker.api a schema1:ProgrammingInterface ; rdfs:label "Chemical Checker RESTful API" ; dcterms:description "Programmatic interface for Chemical Checker data." ; schema1:url . kgr:chemicalchecker.portal a schema1:DocumentationProduct ; rdfs:label "Chemical Checker Portal" ; dcterms:description "Main Chemical Checker portal for searching molecules, browsing statistics, help, and downloads." ; schema1:url . kgr:chemicalchecker.signatures a schema1:Product ; rdfs:label "Chemical Checker Signatures" ; dcterms:description "Precomputed signatures for small molecules, suitable for machine learning." ; schema1:url . kgr:chemicalchecker.signaturizer a schema1:ProcessProduct ; rdfs:label "Signaturizer" ; dcterms:description "Software tool for producing bioactivity signature vectors." ; schema1:url . kgr:cheminf.kg-bioportal a schema1:GraphProduct ; rdfs:label "CHEMINF KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Chemical Information Ontology (CHEMINF), produced by KG-Bioportal from the BioPortal submission. The archive contains CHEMINF_nodes.tsv and CHEMINF_edges.tsv." ; schema1:url . kgr:cheminf.owl a schema1:OntologyProduct ; rdfs:label "cheminf.owl" ; dcterms:description "Chemical Information Ontology in OWL format" ; schema1:url . kgr:chemont.classyfire a schema1:GraphicalInterface ; rdfs:label "ClassyFire Web Interface" ; dcterms:description "ClassyFire web interface for chemical classification and ontology exploration" ; schema1:url . kgr:chemont.obo a schema1:OntologyProduct ; rdfs:label "ChemOnt OBO Ontology" ; dcterms:description "ChemOnt OBO format ontology file (version 2.1)" ; schema1:url . kgr:chip-atlas.api a schema1:ProgrammingInterface ; rdfs:label "ChIP-Atlas Analysis API" ; dcterms:description "Programmatic access to ChIP-Atlas Enrichment Analysis and Diff Analysis through HTTP requests, documented on the project wiki." ; schema1:url . kgr:chip-atlas.docs a schema1:DocumentationProduct ; rdfs:label "ChIP-Atlas Documentation" ; dcterms:description "ChIP-Atlas documentation covering data sources, primary processing, annotation, each analysis tool, download URL patterns and table schemas." ; schema1:url . kgr:chip-atlas.filelist a schema1:Product ; rdfs:label "ChIP-Atlas fileList.tab" ; dcterms:description "Table listing the assembled peak-call BED files used by the Peak Browser, by genome, track type, antigen, cell type class and significance threshold." ; schema1:url . kgr:chiro.kg-bioportal a schema1:GraphProduct ; rdfs:label "CHIRO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of CHEBI Integrated Role Ontology (CHIRO), produced by KG-Bioportal from the BioPortal submission. The archive contains CHIRO_nodes.tsv and CHIRO_edges.tsv." ; schema1:url . kgr:chiro.obo a schema1:OntologyProduct ; rdfs:label "chiro.obo" ; dcterms:description "CHEBI Integrated Role Ontology in OBO format" ; schema1:url . kgr:chiro.owl a schema1:OntologyProduct ; rdfs:label "chiro.owl" ; dcterms:description "CHEBI Integrated Role Ontology in OWL format" ; schema1:url . kgr:chmo.kg-bioportal a schema1:GraphProduct ; rdfs:label "CHMO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Chemical Methods Ontology (CHMO), produced by KG-Bioportal from the BioPortal submission. The archive contains CHMO_nodes.tsv and CHMO_edges.tsv." ; schema1:url . kgr:chmo.owl a schema1:OntologyProduct ; rdfs:label "chmo.owl" ; dcterms:description "Chemical Methods Ontology in OWL format" ; schema1:url . kgr:chr.kg-bioportal a schema1:GraphProduct ; rdfs:label "CHR KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Monochrom (CHR), produced by KG-Bioportal from the BioPortal submission. The archive contains CHR_nodes.tsv and CHR_edges.tsv." ; schema1:url . kgr:cido.kg-bioportal a schema1:GraphProduct ; rdfs:label "CIDO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Coronavirus Infectious Disease Ontology (CIDO), produced by KG-Bioportal from the BioPortal submission. The archive contains CIDO_nodes.tsv and CIDO_edges.tsv." ; schema1:url . kgr:cido.owl a schema1:OntologyProduct ; rdfs:label "cido.owl" ; dcterms:description "Coronavirus Infectious Disease Ontology in OWL format" ; schema1:url . kgr:ciel.covid19 a schema1:Product ; rdfs:label "CIEL COVID-19 Starter Set" ; dcterms:description "COVID-19 concept starter set for rapid implementation" ; schema1:url . kgr:ciel.dictionary a schema1:Product ; rdfs:label "CIEL Concept Dictionary" ; dcterms:description "CIEL concept dictionary with over 55,000 medical concepts" ; schema1:url . kgr:ciel.mpx a schema1:Product ; rdfs:label "CIEL Monkeypox Starter Set" ; dcterms:description "Monkeypox (mpox) concept starter set" ; schema1:url . kgr:ciel.ocl a schema1:GraphicalInterface ; rdfs:label "CIEL on OCL Online" ; dcterms:description "Web interface for browsing CIEL concept dictionary via Open Concept Lab" ; schema1:url . kgr:cio.kg-bioportal a schema1:GraphProduct ; rdfs:label "CIO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Confidence Information Ontology (CIO), produced by KG-Bioportal from the BioPortal submission. The archive contains CIO_nodes.tsv and CIO_edges.tsv." ; schema1:url . kgr:cio.obo a schema1:OntologyProduct ; rdfs:label "cio.obo" ; dcterms:description "Confidence Information Ontology in OBO format" ; schema1:url . kgr:cio.owl a schema1:OntologyProduct ; rdfs:label "cio.owl" ; dcterms:description "Confidence Information Ontology in OWL format" ; schema1:url . kgr:circbase.docs a schema1:DocumentationProduct ; rdfs:label "circBase Documentation" ; dcterms:description "Help and documentation describing circBase data sources, identifiers, and usage notes." ; schema1:url . kgr:circbase.downloads a schema1:Product ; rdfs:label "circBase Bulk Downloads" ; dcterms:description "Bulk data downloads (BED/GFF and sequence files) for circular RNAs provided via the downloads CGI page." ; schema1:url . kgr:circbase.portal a schema1:GraphicalInterface ; rdfs:label "circBase Portal" ; dcterms:description "Web interface for searching and browsing circular RNA annotations across species." ; schema1:url . kgr:cito.documentation a schema1:DocumentationProduct ; rdfs:label "CiTO Documentation" ; dcterms:description "CiTO documentation and specification" ; schema1:url . kgr:cito.ttl a schema1:OntologyProduct ; rdfs:label "CiTO Turtle File" ; dcterms:description "CiTO ontology in Turtle RDF format" ; schema1:url . kgr:civic.api.v1 a schema1:ProgrammingInterface ; rdfs:label "CIViC REST API (V1 - Deprecated)" ; dcterms:description "REST API for programmatic access to the CIViC database (deprecated but still accessible)." ; schema1:url . kgr:civic.api.v2 a schema1:ProgrammingInterface ; rdfs:label "CIViC GraphQL API (V2)" ; dcterms:description "GraphQL API for programmatic access to the CIViC database." ; schema1:url . kgr:civic.data.acceptedsubmittedvariants a schema1:Product ; rdfs:label "CIViC Accepted and Submitted Variants (Nightly)" ; dcterms:description "CIViC Accepted and Submitted Variants, nightly version" ; schema1:url . kgr:civic.data.acceptedvariants a schema1:Product ; rdfs:label "CIViC Accepted Variants (Nightly)" ; dcterms:description "CIViC Accepted Variants, nightly version" ; schema1:url . kgr:civic.data.assertions a schema1:Product ; rdfs:label "CIViC Assertions (Nightly)" ; dcterms:description "CIViC Assertion summaries, nightly version" ; schema1:url . kgr:civic.data.evidence a schema1:Product ; rdfs:label "CIViC Clinical Evidence (Nightly)" ; dcterms:description "CIViC Clinical Evidence summaries, nightly version" ; schema1:url . kgr:civic.data.features a schema1:Product ; rdfs:label "CIViC Features (Nightly)" ; dcterms:description "CIViC Feature summaries, nightly version" ; schema1:url . kgr:civic.data.molecularprofile a schema1:Product ; rdfs:label "CIViC Molecular Profiles (Nightly)" ; dcterms:description "CIViC Molecular Profile summaries, nightly version" ; schema1:url . kgr:civic.data.variantgroups a schema1:Product ; rdfs:label "CIViC Variant Groups (Nightly)" ; dcterms:description "CIViC Variant Group summaries, nightly version" ; schema1:url . kgr:civic.data.variants a schema1:Product ; rdfs:label "CIViC Variants (Nightly)" ; dcterms:description "CIViC Variant summaries, nightly version" ; schema1:url . kgr:civic.site a schema1:GraphicalInterface ; rdfs:label "CIViC Web Interface" ; dcterms:description "Web interface that allows searching, browsing, and curating content in the CIViC database." ; schema1:url . kgr:cl.cl-base.json a schema1:OntologyProduct ; rdfs:label "CL base module (OBOGraph-JSON version)" ; dcterms:description "complete CL but with no imports or external axioms" ; schema1:url . kgr:cl.cl-base.obo a schema1:OntologyProduct ; rdfs:label "CL base module (OBO version)" ; dcterms:description "complete CL but with no imports or external axioms" ; schema1:url . kgr:cl.cl-base.owl a schema1:OntologyProduct ; rdfs:label "CL base module" ; dcterms:description "complete CL but with no imports or external axioms" ; schema1:url . kgr:cl.cl-basic.json a schema1:OntologyProduct ; rdfs:label "Basic CL (OBOGraph-JSON version)" ; dcterms:description "Basic version, no inter-ontology axioms" ; schema1:url . kgr:cl.cl-basic.obo a schema1:OntologyProduct ; rdfs:label "Basic CL (OBO version)" ; dcterms:description "Basic version, no inter-ontology axioms" ; schema1:url . kgr:cl.cl-basic.owl a schema1:OntologyProduct ; rdfs:label "Basic CL" ; dcterms:description "Basic version, no inter-ontology axioms" ; schema1:url . kgr:cl.json a schema1:OntologyProduct ; rdfs:label "CL OBOGraph-JSON format edition" ; dcterms:description "Complete ontology, plus inter-ontology axioms, and imports modules merged in" ; schema1:url . kgr:cl.kg-bioportal a schema1:GraphProduct ; rdfs:label "CL KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Cell Ontology (CL), produced by KG-Bioportal from the BioPortal submission. The archive contains CL_nodes.tsv and CL_edges.tsv." ; schema1:url . kgr:cl.obo a schema1:OntologyProduct ; rdfs:label "CL obo format edition" ; dcterms:description "Complete ontology, plus inter-ontology axioms, and imports modules merged in" ; schema1:url . kgr:cl.owl a schema1:OntologyProduct ; rdfs:label "Main CL OWL edition" ; dcterms:description "Complete ontology, plus inter-ontology axioms, and imports modules" ; schema1:url . kgr:clao.kg-bioportal a schema1:GraphProduct ; rdfs:label "CLAO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Collembola Anatomy Ontology (CLAO), produced by KG-Bioportal from the BioPortal submission. The archive contains CLAO_nodes.tsv and CLAO_edges.tsv." ; schema1:url . kgr:clao.obo a schema1:OntologyProduct ; rdfs:label "clao.obo" ; dcterms:description "Collembola Anatomy Ontology in OBO format" ; schema1:url . kgr:clao.owl a schema1:OntologyProduct ; rdfs:label "clao.owl" ; dcterms:description "Collembola Anatomy Ontology in OWL format" ; schema1:url . kgr:climatemodelskg.sparql a schema1:ProgrammingInterface ; rdfs:label "Climate Models KG SPARQL" ; dcterms:description "SPARQL endpoint for Climate Models KG" ; schema1:url . kgr:climatemodelskg.tpf a schema1:ProgrammingInterface ; rdfs:label "Climate Models KG TPF" ; dcterms:description "Triple Pattern Fragments endpoint for Climate Models KG" ; schema1:url . kgr:clingen.actionability a schema1:Product ; rdfs:label "Clinical Actionability Curations" ; dcterms:description "ClinGen Clinical Actionability evaluations assess the clinical actions available to manage risk for patients with specific genetic disorders. These curations score the actionability of gene-disease pairs based on severity, likelihood of disease, efficacy of interventions, and knowledge base." ; schema1:url . kgr:clingen.dosage a schema1:Product ; rdfs:label "Dosage Sensitivity Curations" ; dcterms:description "ClinGen Dosage Sensitivity curations evaluate whether genes and genomic regions are sensitive to copy number variation. These curations determine if haploinsufficiency (loss of one copy) or triplosensitivity (gain of one copy) of a gene/region causes disease." ; schema1:url . kgr:clingen.evrepo.api a schema1:ProgrammingInterface ; rdfs:label "ClinGen Evidence Repository API" ; dcterms:description "REST API providing access to ClinGen's Evidence Repository for variant pathogenicity assessments. Allows programmatic retrieval of structured evidence used to evaluate the clinical significance of genetic variants." ; schema1:url . kgr:clingen.gene-disease a schema1:Product ; rdfs:label "Gene-Disease Validity Curations" ; dcterms:description "ClinGen Gene-Disease Validity curations assess the strength of evidence supporting or refuting a gene's role in a given disease. These curations classify evidence as Definitive, Strong, Moderate, Limited, No Reported Evidence, or Disputed." ; schema1:url . kgr:clingen.variant a schema1:Product ; rdfs:label "Variant Pathogenicity Curations" ; dcterms:description "ClinGen Variant Pathogenicity curations assess the clinical significance of genetic variants based on ACMG/AMP guidelines. Expert panels classify variants as Pathogenic, Likely Pathogenic, Uncertain Significance, Likely Benign, or Benign." ; schema1:url . kgr:clingen.variant.frameworks a schema1:ProcessProduct ; rdfs:label "Variant Interpretation Frameworks" ; dcterms:description "Framework for standardized interpretation of genetic variants, including disease-specific modifications to the ACMG/AMP guidelines. These frameworks guide variant classification by expert panels and clinical laboratories." ; schema1:url . kgr:clingen.web.interface a schema1:GraphicalInterface ; rdfs:label "ClinGen Search Interface" ; dcterms:description "Web-based interface for accessing ClinGen's curated data. Allows users to search and browse curated gene-disease pairs, variant interpretations, and other ClinGen resources." ; schema1:url . kgr:clinical-data-kp.docs a schema1:DocumentationProduct ; rdfs:label "Clinical Data KP Documentation" ; dcterms:description "Team and tooling documentation for the Clinical Data Provider." ; schema1:url . kgr:clinical-data-kp.portal a schema1:GraphicalInterface ; rdfs:label "Clinical Data KP Portal" ; dcterms:description "Translator project portal describing clinical data provider activities." ; schema1:url . kgr:clinicalkg.docs a schema1:DocumentationProduct ; rdfs:label "CKG Documentation" ; dcterms:description "Project documentation for installation, graph building, querying, reporting, and API usage." ; schema1:url . kgr:clinicaltrialsgov.api a schema1:ProgrammingInterface ; rdfs:label "ClinicalTrials.gov API" ; dcterms:description "RESTful API providing programmatic access to all clinical trial records with JSON and CSV output formats" ; schema1:url . kgr:clinicaltrialsgov.docs a schema1:DocumentationProduct ; rdfs:label "ClinicalTrials.gov Documentation" ; dcterms:description "Comprehensive documentation covering data structure, data element definitions, and API usage" ; schema1:url . kgr:clinicaltrialsgov.downloads a schema1:Product ; rdfs:label "ClinicalTrials.gov Data Downloads" ; dcterms:description "Bulk downloads of all clinical trial records in multiple formats including XML, JSON, and CSV" ; schema1:url . kgr:clinicaltrialsgov.search a schema1:GraphicalInterface ; rdfs:label "ClinicalTrials.gov Search Portal" ; dcterms:description "Web-based interface for searching and browsing clinical trials with advanced filtering and export capabilities" ; schema1:url . kgr:clinpgx.api a schema1:ProgrammingInterface ; rdfs:label "ClinPGx API" ; dcterms:description "REST API for ClinPGx data and bulk file downloads, keeping the path structure of the former PharmGKB API (for example /v1/download/file/data/)" ; schema1:url . kgr:clinvar.api a schema1:ProgrammingInterface ; rdfs:label "ClinVar API (E-utilities)" ; dcterms:description "API access to ClinVar data through NCBI's E-utilities, supporting programmatic queries and data retrieval." ; schema1:url . kgr:clinvar.tab a schema1:Product ; rdfs:label "ClinVar Tab-Delimited Files" ; dcterms:description "Tab-delimited files summarizing variant data, gene-condition relationships, and other aspects of ClinVar data." ; schema1:url . kgr:clinvar.vcf.grch37 a schema1:Product ; rdfs:label "ClinVar VCF (GRCh37)" ; dcterms:description "ClinVar data in VCF format for GRCh37 human genome assembly, containing variant information and clinical significance." ; schema1:url . kgr:clinvar.vcf.grch38 a schema1:Product ; rdfs:label "ClinVar VCF (GRCh38)" ; dcterms:description "ClinVar data in VCF format for GRCh38 human genome assembly, containing variant information and clinical significance." ; schema1:url . kgr:clinvar.web a schema1:GraphicalInterface ; rdfs:label "ClinVar Web Interface" ; dcterms:description "Web interface for searching and browsing ClinVar data, with detailed variant information and evidence." ; schema1:url . kgr:clinvar.xml a schema1:Product ; rdfs:label "ClinVar XML" ; dcterms:description "Complete public data set in XML format containing comprehensive variant information, clinical significance classifications, and supporting evidence." ; schema1:url . kgr:clo.kg-bioportal a schema1:GraphProduct ; rdfs:label "CLO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Cell Line Ontology (CLO), produced by KG-Bioportal from the BioPortal submission. The archive contains CLO_nodes.tsv and CLO_edges.tsv." ; schema1:url . kgr:clyh.kg-bioportal a schema1:GraphProduct ; rdfs:label "CLYH KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Clytia hemisphaerica Development and Anatomy Ontology (CLYH), produced by KG-Bioportal from the BioPortal submission. The archive contains CLYH_nodes.tsv and CLYH_edges.tsv." ; schema1:url . kgr:clyh.obo a schema1:OntologyProduct ; rdfs:label "clyh.obo" ; dcterms:description "Clytia hemisphaerica Development and Anatomy Ontology in OBO format" ; schema1:url . kgr:clyh.owl a schema1:OntologyProduct ; rdfs:label "clyh.owl" ; dcterms:description "Clytia hemisphaerica Development and Anatomy Ontology in OWL format" ; schema1:url . kgr:cm4ai_talent_kg.web_interface a schema1:GraphicalInterface ; rdfs:label "CM4AI Talent KG Web Interface" ; dcterms:description "Web-based interface for browsing and exploring the CM4AI Talent Knowledge Graph" ; schema1:url . kgr:cmaup.publication a schema1:DocumentationProduct ; rdfs:label "CMAUP Database Publication" ; dcterms:description "Nucleic Acids Research database article describing CMAUP, its data model, and its coverage of useful plants, ingredients, targets, pathways, and phenotypes." ; schema1:url . kgr:cmf.owl a schema1:OntologyProduct ; rdfs:label "CranioMaxilloFacial ontology OWL edition" ; dcterms:description "Canonical OWL edition of the CranioMaxilloFacial ontology distributed via OBO PURL." ; schema1:url . kgr:cmip.cmip6cvs a schema1:Product ; rdfs:label "CMIP6 Controlled Vocabularies" ; dcterms:description "The CMIP6 Controlled Vocabularies (CMIP6CV) are machine-readable JSON files defining standardized CMIP identifiers such as source_id, experiment_id, activity_id, and institution_id." ; schema1:url . kgr:cmo.kg-bioportal a schema1:GraphProduct ; rdfs:label "CMO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Clinical Measurement Ontology (CMO), produced by KG-Bioportal from the BioPortal submission. The archive contains CMO_nodes.tsv and CMO_edges.tsv." ; schema1:url . kgr:cmo.obo a schema1:OntologyProduct ; rdfs:label "cmo.obo" ; dcterms:description "Clinical measurement ontology in OBO format" ; schema1:url . kgr:cmo.owl a schema1:OntologyProduct ; rdfs:label "cmo.owl" ; dcterms:description "Clinical measurement ontology in OWL format" ; schema1:url . kgr:cngbdb.cnsa a schema1:GraphicalInterface ; rdfs:label "CNSA Portal" ; dcterms:description "CNGB Sequence Archive (CNSA) interface for submitting and browsing projects, samples, experiments, runs, assemblies, variations and other omics data. Accessions use prefixes such as CNP (project), CNS (sample), CNX (experiment), CNR (run) and CNA (assembly)." ; schema1:url . kgr:cngbdb.cnsa.ftp a schema1:Product ; rdfs:label "CNSA Data Download" ; dcterms:description "Public FTP/HTTPS download area for CNSA data files, split across data1 to data7 subdirectories." ; schema1:url . kgr:cngbdb.cnsa.handbook a schema1:DocumentationProduct ; rdfs:label "CNSA Handbook" ; dcterms:description "English-language CNSA handbook, covering account setup and how to submit and access data." ; schema1:url . kgr:cngbdb.stomicsdb a schema1:GraphicalInterface ; rdfs:label "STOmicsDB" ; dcterms:description "Spatial Transcript Omics DataBase (STOmicsDB), the CNGBdb component for sharing, analyzing and visualizing spatial transcriptomics datasets." ; schema1:url . kgr:cob.cob-base.owl a schema1:OntologyProduct ; rdfs:label "COB base module" ; dcterms:description "base module for COB" ; schema1:url . kgr:cob.cob-native.owl a schema1:OntologyProduct ; rdfs:label "COB native module" ; dcterms:description "COB with native IDs preserved rather than rewired to OBO IDs" ; schema1:url . kgr:cob.kg-bioportal a schema1:GraphProduct ; rdfs:label "COB KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Core Ontology for Biology and Biomedicine (COB), produced by KG-Bioportal from the BioPortal submission. The archive contains COB_nodes.tsv and COB_edges.tsv." ; schema1:url . kgr:cob.owl a schema1:OntologyProduct ; rdfs:label "COB" ; dcterms:description "Core Ontology for Biology and Biomedicine, main ontology" ; schema1:url . kgr:cob.products.demo-cob.owl a schema1:OntologyProduct ; rdfs:label "COB demo ontology (experimental)" ; dcterms:description "demo of COB including subsets of other ontologies (Experimental, for demo purposes only)" ; schema1:url . kgr:cog.download.cog-24-csv a schema1:Product ; rdfs:label "COG 2024 Functional Assignments" ; dcterms:description "COG 2024 functional assignment table in CSV format." ; schema1:url . kgr:cog.download.cogorg24-fasta a schema1:Product ; rdfs:label "COG 2024 Protein FASTA" ; dcterms:description "Protein FASTA set for the COG 2024 release." ; schema1:url . kgr:cog.portal a schema1:GraphicalInterface ; rdfs:label "COG Project Portal" ; dcterms:description "NCBI web interface for exploring the 2024 COG update and project resources." ; schema1:url . kgr:cohd.api a schema1:ProgrammingInterface ; rdfs:label "COHD API" ; dcterms:description "RESTful API providing programmatic access to clinical concept frequencies, co-occurrences, and associations with JSON output" ; schema1:url . kgr:cohd.docs a schema1:DocumentationProduct ; rdfs:label "COHD Documentation" ; dcterms:description "COHD about page describing the datasets, privacy-preserving counts, OMOP standard concepts, and collaborating groups" ; schema1:url . kgr:cohd.notebooks a schema1:ProcessProduct ; rdfs:label "COHD API Examples" ; dcterms:description "Python Jupyter notebooks demonstrating COHD API usage and analysis workflows" ; schema1:url . kgr:cohd.portal a schema1:GraphicalInterface ; rdfs:label "COHD Web Interface" ; dcterms:description "Interactive web interface for exploring clinical concept frequencies and associations" ; schema1:url . kgr:colao.kg-bioportal a schema1:GraphProduct ; rdfs:label "COLAO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Coleoptera Anatomy Ontology (COLAO), produced by KG-Bioportal from the BioPortal submission. The archive contains COLAO_nodes.tsv and COLAO_edges.tsv." ; schema1:url . kgr:colao.obo a schema1:OntologyProduct ; rdfs:label "colao.obo" ; dcterms:description "Coleoptera Anatomy Ontology (COLAO) in OBO format" ; schema1:url . kgr:colao.owl a schema1:OntologyProduct ; rdfs:label "colao.owl" ; dcterms:description "Coleoptera Anatomy Ontology (COLAO) in OWL format" ; schema1:url . kgr:collectri.decoupler a schema1:ProcessProduct ; rdfs:label "CollecTRI via decoupler" ; dcterms:description "Programmatic access to the CollecTRI regulons through the decoupler Python package, which retrieves the signed TF-target network for downstream transcription factor activity estimation." ; schema1:url . kgr:collectri.docs a schema1:DocumentationProduct ; rdfs:label "CollecTRI Repository and Documentation" ; dcterms:description "Source code, construction scripts, benchmarking and case-study notebooks, and usage documentation for CollecTRI." ; schema1:url . kgr:collectri.regulons a schema1:MappingProduct ; rdfs:label "CollecTRI Regulons" ; dcterms:description "The CollecTRI gene regulatory network of signed transcription factor-target gene interactions, compiled from 12 resources, provided as a table of TF-target regulons with the sign (weight) of each interaction." ; schema1:url . kgr:compartments.downloads a schema1:Product ; rdfs:label "COMPARTMENTS Bulk Downloads" ; dcterms:description "Bulk data downloads of localization scores and evidence files." ; schema1:url . kgr:compartments.portal a schema1:GraphicalInterface ; rdfs:label "COMPARTMENTS Portal" ; dcterms:description "Web interface for exploring protein subcellular localization evidence across integrated sources." ; schema1:url . kgr:compath.catalog a schema1:GraphicalInterface ; rdfs:label "ComPath Catalog" ; dcterms:description "Catalog interface for browsing curated pathway mappings." ; schema1:url . kgr:compath.curation-protocol a schema1:DocumentationProduct ; rdfs:label "ComPath Curation Protocol" ; dcterms:description "Curation protocol and methodology documentation for ComPath mappings." ; schema1:url . kgr:compath.overview a schema1:GraphicalInterface ; rdfs:label "ComPath Overview" ; dcterms:description "Overview interface for pathway databases integrated in ComPath." ; schema1:url . kgr:compath.portal a schema1:GraphicalInterface ; rdfs:label "ComPath Portal" ; dcterms:description "Main ComPath portal for pathway database harmonization and analysis." ; schema1:url . kgr:compath.similarity a schema1:GraphicalInterface ; rdfs:label "ComPath Similarity Explorer" ; dcterms:description "Interface for pathway similarity comparisons." ; schema1:url . kgr:complexportal.arabidopsis.complextab a schema1:Product ; rdfs:label "Complex Portal Arabidopsis thaliana ComplexTAB" ; dcterms:description "Arabidopsis thaliana complexes dataset from Complex Portal in ComplexTAB format" ; schema1:url . kgr:complexportal.bsubtilis.complextab a schema1:Product ; rdfs:label "Complex Portal Bacillus subtilis ComplexTAB" ; dcterms:description "Bacillus subtilis complexes dataset from Complex Portal in ComplexTAB format" ; schema1:url . kgr:complexportal.cattle.complextab a schema1:Product ; rdfs:label "Complex Portal Cattle ComplexTAB" ; dcterms:description "Cattle complexes dataset from Complex Portal in ComplexTAB format" ; schema1:url . kgr:complexportal.chicken.complextab a schema1:Product ; rdfs:label "Complex Portal Chicken ComplexTAB" ; dcterms:description "Chicken complexes dataset from Complex Portal in ComplexTAB format" ; schema1:url . kgr:complexportal.complextab a schema1:Product ; rdfs:label "Complex Portal ComplexTAB" ; dcterms:description "Complex Portal data in ComplexTAB flat-file format for easy parsing and Excel compatibility, organized by species" ; schema1:url . kgr:complexportal.db-crossrefs a schema1:MappingProduct ; rdfs:label "Complex Portal Database Cross-References" ; dcterms:description "Cross-references exported from Complex Portal to external databases" ; schema1:url . kgr:complexportal.dictyostelium.complextab a schema1:Product ; rdfs:label "Complex Portal Dictyostelium discoideum ComplexTAB" ; dcterms:description "Dictyostelium discoideum complexes dataset from Complex Portal in ComplexTAB format" ; schema1:url . kgr:complexportal.documentation a schema1:DocumentationProduct ; rdfs:label "Complex Portal Documentation" ; dcterms:description "Comprehensive documentation covering data formats, API usage, and complex annotation guidelines" ; schema1:url . kgr:complexportal.dog.complextab a schema1:Product ; rdfs:label "Complex Portal Dog ComplexTAB" ; dcterms:description "Dog complexes dataset from Complex Portal in ComplexTAB format" ; schema1:url . kgr:complexportal.ecoli.complextab a schema1:Product ; rdfs:label "Complex Portal E. coli ComplexTAB" ; dcterms:description "E. coli complexes dataset from Complex Portal in ComplexTAB format" ; schema1:url . kgr:complexportal.fissionyeast.complextab a schema1:Product ; rdfs:label "Complex Portal Fission Yeast ComplexTAB" ; dcterms:description "Fission yeast complexes dataset from Complex Portal in ComplexTAB format" ; schema1:url . kgr:complexportal.fruitfly.complextab a schema1:Product ; rdfs:label "Complex Portal Fruit Fly ComplexTAB" ; dcterms:description "Fruit fly complexes dataset from Complex Portal in ComplexTAB format" ; schema1:url . kgr:complexportal.hpylori.complextab a schema1:Product ; rdfs:label "Complex Portal Helicobacter pylori ComplexTAB" ; dcterms:description "Helicobacter pylori complexes dataset from Complex Portal in ComplexTAB format" ; schema1:url . kgr:complexportal.human.complextab a schema1:Product ; rdfs:label "Complex Portal Human ComplexTAB" ; dcterms:description "Human complexes dataset from Complex Portal in ComplexTAB format" ; schema1:url . kgr:complexportal.human.predicted.complextab a schema1:Product ; rdfs:label "Complex Portal Human Predicted ComplexTAB" ; dcterms:description "Human predicted complexes dataset from Complex Portal in ComplexTAB format" ; schema1:url . kgr:complexportal.human.predicted.psi25 a schema1:Product ; rdfs:label "Complex Portal Human Predicted PSI-MI XML 2.5" ; dcterms:description "Human predicted complexes dataset from Complex Portal in PSI-MI XML 2.5 format" ; schema1:url . kgr:complexportal.human.predicted.psi30 a schema1:Product ; rdfs:label "Complex Portal Human Predicted PSI-MI XML 3.0" ; dcterms:description "Human predicted complexes dataset from Complex Portal in PSI-MI XML 3.0 format" ; schema1:url . kgr:complexportal.human.psi25 a schema1:Product ; rdfs:label "Complex Portal Human PSI-MI XML 2.5" ; dcterms:description "Human complexes dataset from Complex Portal in PSI-MI XML 2.5 format" ; schema1:url . kgr:complexportal.human.psi30 a schema1:Product ; rdfs:label "Complex Portal Human PSI-MI XML 3.0" ; dcterms:description "Human complexes dataset from Complex Portal in PSI-MI XML 3.0 format" ; schema1:url . kgr:complexportal.id-translation a schema1:MappingProduct ; rdfs:label "Complex Portal ID Translation Table" ; dcterms:description "Translation table between stable Complex Portal IDs and IntAct accession identifiers" ; schema1:url . kgr:complexportal.lamprey.complextab a schema1:Product ; rdfs:label "Complex Portal Lamprey ComplexTAB" ; dcterms:description "Lamprey complexes dataset from Complex Portal in ComplexTAB format" ; schema1:url . kgr:complexportal.leishmania.complextab a schema1:Product ; rdfs:label "Complex Portal Leishmania major ComplexTAB" ; dcterms:description "Leishmania major complexes dataset from Complex Portal in ComplexTAB format" ; schema1:url . kgr:complexportal.mouse.complextab a schema1:Product ; rdfs:label "Complex Portal Mouse ComplexTAB" ; dcterms:description "Mouse complexes dataset from Complex Portal in ComplexTAB format" ; schema1:url . kgr:complexportal.mouse.psi25 a schema1:Product ; rdfs:label "Complex Portal Mouse PSI-MI XML 2.5" ; dcterms:description "Mouse complexes dataset from Complex Portal in PSI-MI XML 2.5 format" ; schema1:url . kgr:complexportal.mouse.psi30 a schema1:Product ; rdfs:label "Complex Portal Mouse PSI-MI XML 3.0" ; dcterms:description "Mouse complexes dataset from Complex Portal in PSI-MI XML 3.0 format" ; schema1:url . kgr:complexportal.paeru.complextab a schema1:Product ; rdfs:label "Complex Portal Pseudomonas aeruginosa ComplexTAB" ; dcterms:description "Pseudomonas aeruginosa complexes dataset from Complex Portal in ComplexTAB format" ; schema1:url . kgr:complexportal.pig.complextab a schema1:Product ; rdfs:label "Complex Portal Pig ComplexTAB" ; dcterms:description "Pig complexes dataset from Complex Portal in ComplexTAB format" ; schema1:url . kgr:complexportal.portal a schema1:GraphicalInterface ; rdfs:label "Complex Portal Web Interface" ; dcterms:description "Web portal for searching, browsing, and visualizing macromolecular complexes with detailed annotations and structural information" ; schema1:url . kgr:complexportal.psi25 a schema1:Product ; rdfs:label "Complex Portal PSI-MI XML 2.5" ; dcterms:description "Complete Complex Portal dataset in PSI-MI XML 2.5 format, organized by species" ; schema1:url . kgr:complexportal.psi30 a schema1:Product ; rdfs:label "Complex Portal PSI-MI XML 3.0" ; dcterms:description "Complete Complex Portal dataset in PSI-MI XML 3.0 format, organized by species" ; schema1:url . kgr:complexportal.pufferfish.takifugu.complextab a schema1:Product ; rdfs:label "Complex Portal Pufferfish (Takifugu) ComplexTAB" ; dcterms:description "Pufferfish (Takifugu rubripes) complexes dataset from Complex Portal in ComplexTAB format" ; schema1:url . kgr:complexportal.pufferfish.tetraodon.complextab a schema1:Product ; rdfs:label "Complex Portal Pufferfish (Tetraodon) ComplexTAB" ; dcterms:description "Pufferfish (Tetraodon nigroviridis) complexes dataset from Complex Portal in ComplexTAB format" ; schema1:url . kgr:complexportal.rabbit.complextab a schema1:Product ; rdfs:label "Complex Portal Rabbit ComplexTAB" ; dcterms:description "Rabbit complexes dataset from Complex Portal in ComplexTAB format" ; schema1:url . kgr:complexportal.rat.complextab a schema1:Product ; rdfs:label "Complex Portal Rat ComplexTAB" ; dcterms:description "Rat complexes dataset from Complex Portal in ComplexTAB format" ; schema1:url . kgr:complexportal.released-complexes a schema1:Product ; rdfs:label "Complex Portal Released Complexes" ; dcterms:description "Tab-delimited list of complexes released in the current Complex Portal FTP release" ; schema1:url . kgr:complexportal.sarscov2.complextab a schema1:Product ; rdfs:label "Complex Portal SARS-CoV-2 ComplexTAB" ; dcterms:description "SARS-CoV-2 complexes dataset from Complex Portal in ComplexTAB format" ; schema1:url . kgr:complexportal.seaurchin.complextab a schema1:Product ; rdfs:label "Complex Portal Sea Urchin ComplexTAB" ; dcterms:description "Sea urchin complexes dataset from Complex Portal in ComplexTAB format" ; schema1:url . kgr:complexportal.sheep.complextab a schema1:Product ; rdfs:label "Complex Portal Sheep ComplexTAB" ; dcterms:description "Sheep complexes dataset from Complex Portal in ComplexTAB format" ; schema1:url . kgr:complexportal.toxoplasma.complextab a schema1:Product ; rdfs:label "Complex Portal Toxoplasma gondii ComplexTAB" ; dcterms:description "Toxoplasma gondii complexes dataset from Complex Portal in ComplexTAB format" ; schema1:url . kgr:complexportal.webservice a schema1:ProgrammingInterface ; rdfs:label "Complex Portal Web Service" ; dcterms:description "RESTful web service API for programmatic access to Complex Portal data" ; schema1:url . kgr:complexportal.worm.complextab a schema1:Product ; rdfs:label "Complex Portal Worm ComplexTAB" ; dcterms:description "Worm complexes dataset from Complex Portal in ComplexTAB format" ; schema1:url . kgr:complexportal.xenopus.complextab a schema1:Product ; rdfs:label "Complex Portal African Clawed Frog ComplexTAB" ; dcterms:description "African clawed frog complexes dataset from Complex Portal in ComplexTAB format" ; schema1:url . kgr:complexportal.yeast.psi25 a schema1:Product ; rdfs:label "Complex Portal Yeast PSI-MI XML 2.5" ; dcterms:description "Yeast complexes dataset from Complex Portal in PSI-MI XML 2.5 format" ; schema1:url . kgr:complexportal.yeast.psi30 a schema1:Product ; rdfs:label "Complex Portal Yeast PSI-MI XML 3.0" ; dcterms:description "Yeast complexes dataset from Complex Portal in PSI-MI XML 3.0 format" ; schema1:url . kgr:complexportal.yeast.s288c.complextab a schema1:Product ; rdfs:label "Complex Portal Yeast S288c ComplexTAB" ; dcterms:description "Budding yeast (S288c) complexes dataset from Complex Portal in ComplexTAB format" ; schema1:url . kgr:complexportal.zebrafish.complextab a schema1:Product ; rdfs:label "Complex Portal Zebrafish ComplexTAB" ; dcterms:description "Zebrafish complexes dataset from Complex Portal in ComplexTAB format" ; schema1:url . kgr:connections-hypothesis-kp.code a schema1:ProcessProduct ; rdfs:label "Connections Hypothesis KP Source Code" ; dcterms:description "Source code for the Connections Hypothesis Provider API implementation." ; schema1:url . kgr:cord-19.corpus a schema1:Product ; rdfs:label "CORD-19 corpus" ; dcterms:description "The CORD-19 corpus, comprising article metadata, machine-readable full text, and precomputed document embeddings. Releases were distributed as compressed archives; historical releases (first 2020-03-13, final 2022-06-02) remain hosted on AWS S3 and are documented in the AI2 repository." ; schema1:url . kgr:cord-19.landing a schema1:DocumentationProduct ; rdfs:label "CORD-19 download / landing page" ; dcterms:description "AI2 data landing page describing the CORD-19 corpus, its structure, and access to historical releases." ; schema1:url . kgr:corum.all_complexes a schema1:Product ; rdfs:label "CORUM All Complexes" ; dcterms:description "Complete dataset of all curated protein complexes in CORUM in tab-delimited format" ; schema1:url . kgr:corum.core_complexes a schema1:Product ; rdfs:label "CORUM Core Complexes" ; dcterms:description "Core dataset of manually curated, non-redundant protein complexes in CORUM in tab-delimited format" ; schema1:url . kgr:corum.mitab a schema1:Product ; rdfs:label "CORUM MITAB" ; dcterms:description "Dataset of all CORUM protein complexes in PSI-MI MITAB 2.5 format" ; schema1:url . kgr:corum.psi_mi a schema1:Product ; rdfs:label "CORUM PSI-MI" ; dcterms:description "Dataset of all CORUM protein complexes in PSI-MI XML format (Proteomics Standards Initiative)" ; schema1:url . kgr:cosmic.downloads a schema1:Product ; rdfs:label "COSMIC Downloads" ; dcterms:description "Top-level downloads page with links to COSMIC release files (registration/license required)" ; schema1:url . kgr:cosmic.kb.overview a schema1:DocumentationProduct ; rdfs:label "COSMIC-KB Portal overview" ; dcterms:description "COSMIC Knowledgebase overview and documentation pages" ; schema1:url . kgr:cosmic.portal a schema1:GraphicalInterface ; rdfs:label "COSMIC Portal" ; dcterms:description "Web portal for exploring somatic mutations, gene pages, cancer types, and curated annotations" ; schema1:url . kgr:courage.dump a schema1:GraphProduct ; rdfs:label "COURAGE Registry Open Dataset" ; dcterms:description "Open data release of the COURAGE registry as linked data, covering collections, featured items, groups, organizations, and persons. Published as a Zenodo archive of RDF data, version 1.1 dated 2019-07-12." ; schema1:url . kgr:courage.ontology a schema1:OntologyProduct ; rdfs:label "COURAGE Ontology" ; dcterms:description "The COURAGE Ontology, the schema of the COURAGE registry, published as an OWL file. It models collections, collection items, persons and their roles, groups, organizations, and events in the domain of cultural opposition." . kgr:courage.registry a schema1:GraphicalInterface ; rdfs:label "COURAGE Registry" ; dcterms:description "The COURAGE registry web interface, providing browsable and searchable access to collections, persons, organizations, groups, events, and featured items, with descriptions available in multiple languages." ; schema1:url . kgr:courage.sparql a schema1:ProgrammingInterface ; rdfs:label "COURAGE SPARQL Endpoint" ; dcterms:description "SPARQL endpoint over the COURAGE triple store, historically served from the Hungarian Academy of Sciences infrastructure. The project reported that the graph database and SPARQL made it practical to express complex queries over the registry and to manage descriptions in fifteen languages at once." ; schema1:url . kgr:courage.sztaki-page a schema1:DocumentationProduct ; rdfs:label "COURAGE Knowledge Graph Service Page (SZTAKI)" ; dcterms:description "Service page for the COURAGE knowledge graph at HUN-REN SZTAKI, the institute that built and hosted the graph, summarizing its contents and technical basis." ; schema1:url . kgr:cpdb.downloads a schema1:Product ; rdfs:label "ConsensusPathDB Data Downloads" ; dcterms:description "Download and access page for ConsensusPathDB data and service assets" ; schema1:url . kgr:cpdb.web a schema1:GraphicalInterface ; rdfs:label "ConsensusPathDB Web Interface" ; dcterms:description "Web-based interface for integrated pathway and interaction analysis from multiple databases" ; schema1:url . kgr:cpdb.wsdl a schema1:ProgrammingInterface ; rdfs:label "ConsensusPathDB SOAP WSDL" ; dcterms:description "SOAP web service description for ConsensusPathDB programmatic access" ; schema1:url . kgr:cpic.alleles a schema1:Product ; rdfs:label "CPIC Allele & Diplotype Function Tables" ; dcterms:description "Allele function and diplotype-to-phenotype tables standardized for clinical pharmacogenetic test result interpretation" ; schema1:url . kgr:cpic.api a schema1:ProgrammingInterface ; rdfs:label "CPIC Database & API" ; dcterms:description "Structured data (database and API) for CPIC guideline-derived gene–drug relationships, allele function, and standardized terms" ; schema1:url . kgr:cpic.cyp2d6_translation a schema1:DocumentationProduct ; rdfs:label "CPIC CYP2D6 Genotype to Phenotype Project" ; dcterms:description "CYP2D6 genotype to phenotype translation project resources" ; schema1:url . kgr:cpic.genes_drugs a schema1:Product ; rdfs:label "CPIC Genes-Drugs Tables" ; dcterms:description "Curated gene–drug pair tables linking pharmacogenes with affected medications and guideline recommendations" ; schema1:url . kgr:cpic.guidelines a schema1:DocumentationProduct ; rdfs:label "CPIC Clinical Practice Guidelines" ; dcterms:description "Peer-reviewed, evidence-based, updatable pharmacogenetic clinical practice guidelines translating genotype into prescribing recommendations" ; schema1:url . kgr:cpic.onepager a schema1:DocumentationProduct ; rdfs:label "CPIC One-Page Summary" ; dcterms:description "One-page summary document providing concise overview of CPIC mission and guideline process (DOCX)" ; schema1:url . kgr:cpic.overview.slides a schema1:DocumentationProduct ; rdfs:label "CPIC Overview Presentation Slides" ; dcterms:description "Overview slide deck describing CPIC assumptions, development process, and implementation guidance (PowerPoint)" ; schema1:url . kgr:cpic.portal a schema1:GraphicalInterface ; rdfs:label "CPIC Website Portal" ; dcterms:description "Main CPIC website portal providing access to guidelines, genes-drugs tables, alleles, publications, resources, and implementation information" ; schema1:url . kgr:cpic.sop a schema1:DocumentationProduct ; rdfs:label "CPIC Pharmacogene Curation SOP" ; dcterms:description "Standard operating procedure PDF for assigning allele function and translating diplotypes to phenotypes" ; schema1:url . kgr:cpic.term_standardization a schema1:DocumentationProduct ; rdfs:label "CPIC Term Standardization Project" ; dcterms:description "Term standardization project resources for clinical pharmacogenetic test result terminology" ; schema1:url . kgr:cpt.spec a schema1:DocumentationProduct ; rdfs:label "CPT Overview and Guidance" ; dcterms:description "Official American Medical Association CPT overview and guidance page for the Current Procedural Terminology code set." ; schema1:url . kgr:cqs.docs a schema1:DocumentationProduct ; rdfs:label "CQS Documentation" ; dcterms:description "Service overview and usage guidance for CQS in the Translator wiki." ; schema1:url . kgr:craft.site a schema1:GraphicalInterface ; rdfs:label "CRAFT Corpus Repository" ; dcterms:description "Repository providing the CRAFT corpus, annotations, and documentation." ; schema1:url . kgr:credit.spec a schema1:DocumentationProduct ; rdfs:label "CRediT Resource Hub" ; dcterms:description "Official CRediT resource hub describing the ANSI/NISO contributor-role taxonomy, its 14 roles, and supporting background material." ; schema1:url . kgr:creeds.automatic_disease_signatures a schema1:Product ; rdfs:label "CREEDS Automatic Disease Signatures" ; dcterms:description "Automatic gene expression signatures derived from disease signatures" ; schema1:url . kgr:creeds.automatic_single_drug a schema1:Product ; rdfs:label "CREEDS Automatic Single Drug Perturbations" ; dcterms:description "Automatic gene expression signatures derived from single drug perturbations" ; schema1:url . kgr:creeds.automatic_single_gene a schema1:Product ; rdfs:label "CREEDS Automatic Single Gene Perturbations" ; dcterms:description "Automatic gene expression signatures derived from single gene perturbations" ; schema1:url . kgr:creeds.drugmatrix a schema1:Product ; rdfs:label "CREEDS DrugMatrix single drug perturbations" ; dcterms:description "DrugMatrix single drug perturbations" ; schema1:url . kgr:creeds.manual_disease_signatures a schema1:Product ; rdfs:label "CREEDS Manual Disease Signatures" ; dcterms:description "Manual gene expression signatures derived from disease signatures" ; schema1:url . kgr:creeds.manual_single_drug a schema1:Product ; rdfs:label "CREEDS Manual Single Drug Perturbations" ; dcterms:description "Manual gene expression signatures derived single drug perturbations" ; schema1:url . kgr:creeds.manual_single_gene a schema1:Product ; rdfs:label "CREEDS Manual Single Gene Perturbations" ; dcterms:description "Manual gene expression signatures derived from single gene perturbations" ; schema1:url . kgr:creeds.web_interface a schema1:GraphicalInterface ; rdfs:label "CREEDS Web Interface" ; dcterms:description "Web interface for exploring CREEDS gene expression signatures" ; schema1:url . kgr:cro.kg-bioportal a schema1:GraphProduct ; rdfs:label "CRO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Contributor Role Ontology (CRO), produced by KG-Bioportal from the BioPortal submission. The archive contains CRO_nodes.tsv and CRO_edges.tsv." ; schema1:url . kgr:cro.owl a schema1:OntologyProduct ; rdfs:label "CRO" ; dcterms:description "CRO" ; schema1:url . kgr:cropland-data-layer.croplandcros a schema1:GraphicalInterface ; rdfs:label "CroplandCROS Viewer" ; dcterms:description "CroplandCROS web mapping application for interactive viewing, querying, and exporting Cropland Data Layer crop-type raster data." ; schema1:url . kgr:ctd.batch_query a schema1:GraphicalInterface ; rdfs:label "CTD Batch Query" ; dcterms:description "Web tool for retrieving customized CTD data sets by submitting a list of chemicals, diseases, genes, pathways, GO terms, or references. Results can be returned as CSV, TSV, XML, or JSON, and the query can also be driven by URL for programmatic access." ; schema1:url . kgr:ctd.chem_gene_ixn_types a schema1:OntologyProduct ; rdfs:label "CTD Chemical-Gene Interaction Types" ; dcterms:description "The hierarchical controlled vocabulary of chemical-gene interaction types that CTD uses when curating interactions, with a code, description, and parent for each type. Also available as CSV, TSV, and XML." ; schema1:url . kgr:ctd.exposure_events a schema1:Product ; rdfs:label "CTD Exposure-Event Associations" ; dcterms:description "Curated exposure events, one row per stressor-receptor-outcome measurement, with stressor source, receptor demographics, assay methods, marker levels, location, and disease or phenotype outcomes. Also available as CSV and XML." ; schema1:url . kgr:ctd.exposure_studies a schema1:Product ; rdfs:label "CTD Exposure-Study Associations" ; dcterms:description "Curated exposure studies, one row per reference, with study factors, exposure stressors, receptors, countries, mediums, exposure markers, diseases, phenotypes, and an author summary. Also available as CSV and XML." ; schema1:url . kgr:ctd.tetramers a schema1:GraphicalInterface ; rdfs:label "CTD Tetramers" ; dcterms:description "Web query for CTD Tetramers, computationally inferred chemical-gene-phenotype-disease four-way relationships built from curated CTD content." ; schema1:url . kgr:ctd2.dashboard a schema1:GraphicalInterface ; rdfs:label "CTD2 Dashboard" ; dcterms:description "Searchable CTD2 Dashboard interface for Network-generated observations and validated experimental findings associated with genes, proteins, compounds, biomarkers, and other studied subjects." ; schema1:url . kgr:ctd2.data-portal a schema1:GraphicalInterface ; rdfs:label "CTD2 Data Portal" ; dcterms:description "NCI CTD2 Data Portal listing CTD2 Network study datasets in the Index of NCI Studies for community access and reuse." ; schema1:url . kgr:ctd2.usage-guide a schema1:DocumentationProduct ; rdfs:label "Using CTD2 Data" ; dcterms:description "NCI guidance for accessing, using, and acknowledging CTD2 Network data and associated raw and analyzed datasets." ; schema1:url . kgr:cteno.kg-bioportal a schema1:GraphProduct ; rdfs:label "CTENO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Ctenophore Ontology (CTENO), produced by KG-Bioportal from the BioPortal submission. The archive contains CTENO_nodes.tsv and CTENO_edges.tsv." ; schema1:url . kgr:cteno.owl a schema1:OntologyProduct ; rdfs:label "cteno.owl" ; dcterms:description "Ctenophore Ontology in OWL format" ; schema1:url . kgr:cto.kg-bioportal a schema1:GraphProduct ; rdfs:label "CTO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Clinical Trials Ontology (CTO), produced by KG-Bioportal from the BioPortal submission. The archive contains CTO_nodes.tsv and CTO_edges.tsv." ; schema1:url . kgr:cto.owl a schema1:OntologyProduct ; rdfs:label "cto.owl" ; dcterms:description "CTO: Core Ontology of Clinical Trials in OWL format" ; schema1:url . kgr:ctrp.data a schema1:Product ; rdfs:label "CTRP Data Downloads" ; dcterms:description "Raw sensitivity data, enrichment data, and supporting information available through the NCI CTD2 Data Portal" ; schema1:url . kgr:ctrp.portal a schema1:GraphicalInterface ; rdfs:label "CTRP v2 Portal" ; dcterms:description "Interactive web portal (version 2) for exploring 481 compounds tested against 860 cancer cell lines with clustering, enrichments, and correlations" ; schema1:url . kgr:culture-knowledge-graph.cgif a schema1:DataModelProduct ; rdfs:label "Culture Graph Interchange Format (CGIF)" ; dcterms:description "The Culture Graph Interchange Format (CGIF), the specification and workflow that data providers follow to contribute research data metadata for harvesting into the Culture Knowledge Graph." ; schema1:url . kgr:culture-knowledge-graph.cto a schema1:OntologyProduct ; rdfs:label "NFDI4Culture Ontology (CTO)" ; dcterms:description "The NFDI4Culture Ontology (CTO), the domain-specific module used to structure the Culture Knowledge Graph. CTO builds on the NFDIcore mid-level ontology v3 and is aligned with Basic Formal Ontology (BFO) 2020. It is developed in Task Area 5 of NFDI4Culture and published in OWL and Turtle, with base and full variants." ; schema1:url . kgr:culture-knowledge-graph.cto-documentation a schema1:DocumentationProduct ; rdfs:label "NFDI4Culture Ontology Documentation" ; dcterms:description "Documentation for the NFDI4Culture Ontology (CTO), generated from the ontology source and published by FIZ Karlsruhe." ; schema1:url . kgr:culture-knowledge-graph.data-search a schema1:GraphicalInterface ; rdfs:label "Culture Data Search" ; dcterms:description "Culture Data Search, the faceted discovery interface over the Culture Knowledge Graph, served by the shmarql SPARQL exploration tool developed within NFDI4Culture." ; schema1:url . kgr:culture-knowledge-graph.documentation a schema1:DocumentationProduct ; rdfs:label "Culture Knowledge Graph Service Page" ; dcterms:description "NFDI4Culture service page for the Culture Knowledge Graph, describing its scope, the technologies and ontologies used, the data integration workflow, and the team responsible for it." ; schema1:url . kgr:culture-knowledge-graph.dump a schema1:GraphProduct ; rdfs:label "Culture Knowledge Graph RDF Dump" ; dcterms:description "Full RDF dump of the Culture Knowledge Graph in N-Triples, referenced from the SPARQL endpoint page alongside the public query interface. NFDI4Culture describes the integrated resources as version controlled and regularly updated through a Git repository from which the data dump is offered." ; schema1:url . kgr:culture-knowledge-graph.sparql a schema1:ProgrammingInterface ; rdfs:label "Culture Knowledge Graph SPARQL Endpoint" ; dcterms:description "Public SPARQL 1.1 endpoint over the Culture Knowledge Graph, with a browsable query interface and documented example queries covering research data repositories and portals, NFDI4Culture partner organizations with their Wikidata mappings, triple counts, and listings of types and properties in the graph." ; schema1:url . kgr:cureid.about a schema1:DocumentationProduct ; rdfs:label "CURE ID About" ; dcterms:description "About page describing the CURE ID initiative, its NCATS/FDA partnership, and how clinicians can participate." ; schema1:url . kgr:cureid.app a schema1:GraphicalInterface ; rdfs:label "CURE ID Web App" ; dcterms:description "Web application for exploring and contributing crowdsourced real-world clinical treatment cases for difficult-to-treat and rare diseases, including off-label drug use." ; schema1:url . kgr:cureid.explore a schema1:GraphicalInterface ; rdfs:label "CURE ID Explore" ; dcterms:description "Browseable interface for exploring diseases, treatments, and submitted clinical case reports within the CURE ID platform." ; schema1:url . kgr:cvdo.kg-bioportal a schema1:GraphProduct ; rdfs:label "CVDO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Cardiovascular Disease Ontology (CVDO), produced by KG-Bioportal from the BioPortal submission. The archive contains CVDO_nodes.tsv and CVDO_edges.tsv." ; schema1:url . kgr:cvdo.owl a schema1:OntologyProduct ; rdfs:label "cvdo.owl" ; dcterms:description "Cardiovascular Disease Ontology in OWL format" ; schema1:url . kgr:cvx.docs a schema1:DocumentationProduct ; rdfs:label "CDC Vaccine Code Sets Documentation" ; dcterms:description "CDC IIS code-set hub with release notes, related code mappings, and additional access options for vaccine coding resources." ; schema1:url . kgr:cytoscape.app-store a schema1:GraphicalInterface ; rdfs:label "Cytoscape App Store" ; dcterms:description "Cytoscape App Store for discovering and installing Cytoscape apps that extend analysis, visualization, and data integration workflows." ; schema1:url . kgr:cytoscape.automation-api a schema1:ProgrammingInterface ; rdfs:label "Cytoscape Automation API" ; dcterms:description "CyREST-powered Cytoscape Automation interface for executing reproducible Cytoscape workflows from external tools such as Python, R, and Jupyter." ; schema1:url . kgr:cytoscape.desktop a schema1:GraphicalInterface ; rdfs:label "Cytoscape Desktop" ; dcterms:description "Cross-platform Cytoscape desktop application for complex network visualization, molecular interaction analysis, and integration of network attribute data." ; schema1:url . kgr:dailymed.mapping_files a schema1:Product ; rdfs:label "DailyMed Mapping Files" ; dcterms:description "Mapping files linking DailyMed drug labels to RxNorm codes, UNII identifiers, and NDC codes for interoperability" ; schema1:url . kgr:dailymed.rss_feeds a schema1:Product ; rdfs:label "DailyMed RSS Feeds" ; dcterms:description "RSS feeds providing notifications of new and updated drug labels published on DailyMed" ; schema1:url . kgr:dailymed.web_services a schema1:ProgrammingInterface ; rdfs:label "DailyMed Web Services" ; dcterms:description "RESTful web services enabling programmatic access to DailyMed drug labeling data in Structured Product Labeling (SPL) format" ; schema1:url . kgr:dailymed.website a schema1:GraphicalInterface ; rdfs:label "DailyMed Website" ; dcterms:description "Interactive web interface providing searchable access to over 154,000 FDA-approved drug labels with advanced search, browsing by therapeutic class, and pill image viewing" ; schema1:url . kgr:darkkinasekb.compounds a schema1:Product ; rdfs:label "DKK Tool Compounds" ; dcterms:description "Tool compounds for dark kinases with kinome-wide selectivity profiles and NanoBRET validation" ; schema1:url . kgr:darkkinasekb.github a schema1:Product ; rdfs:label "DKK GitHub Repository" ; dcterms:description "GitHub repository containing source code for Dark Kinase Knowledgebase website" ; schema1:url . kgr:darkkinasekb.interactions a schema1:Product ; rdfs:label "DKK Protein Interactions" ; dcterms:description "Protein interaction networks for dark kinases from affinity purification mass spectrometry and proximity labeling experiments" ; schema1:url . kgr:darkkinasekb.portal a schema1:GraphicalInterface ; rdfs:label "DKK Main Portal" ; dcterms:description "Main web portal for Dark Kinase Knowledgebase providing comprehensive data on 162 understudied kinases including tool compounds, PRM peptides, protein interactions, and expression profiles" ; schema1:url . kgr:darkkinasekb.prm a schema1:Product ; rdfs:label "DKK PRM Peptides" ; dcterms:description "Parallel reaction monitoring (PRM) peptides for quantitative mass spectrometry of dark kinases with standard curves and detection limits" ; schema1:url . kgr:darkkinasekb.synapse a schema1:Product ; rdfs:label "DKK Synapse Data Repository" ; dcterms:description "Bulk datasets and resources distributed through Synapse platform" ; schema1:url . kgr:darwins-ark.genotypes a schema1:Product ; rdfs:label "Darwin's Ark dog genotypes" ; dcterms:description "A PLINK binary fileset of genotypes from 3,277 dog whole genomes, with sample identifiers matching the dog identifiers used in the Darwin's Ark survey data files. Sequencing data are deposited under BioProject PRJNA675863." ; schema1:url . kgr:darwins-ark.surveys a schema1:Product ; rdfs:label "Darwin's Ark survey data" ; dcterms:description "Owner-reported survey data covering behavioral and physical traits for dogs enrolled in Darwin's Ark, keyed to the same dog identifiers as the genotype data." ; schema1:url . kgr:darwins-ark.website a schema1:GraphicalInterface ; rdfs:label "Darwin's Ark website" ; dcterms:description "The Darwin's Ark website, where owners enroll dogs, complete behavioral surveys, and browse project results." ; schema1:url . kgr:dbgap.advanced-search a schema1:GraphicalInterface ; rdfs:label "dbGaP Advanced Search" ; dcterms:description "dbGaP Advanced Search interface for faceted searching of studies by study design, molecular data type, consent and other attributes." ; schema1:url . kgr:dbgap.authorized-access a schema1:GraphicalInterface ; rdfs:label "dbGaP Authorized Access" ; dcterms:description "dbGaP Authorized Access system, where approved investigators submit data access requests and download controlled-access individual-level data. Requires an eRA Commons or NIH login." ; schema1:url . kgr:dbgap.fhir-api a schema1:ProgrammingInterface ; rdfs:label "dbGaP FHIR API" ; dcterms:description "dbGaP FHIR API exposing study, subject and phenotype metadata as HL7 FHIR resources; open studies are public and controlled studies require authorization." ; schema1:url . kgr:dbgap.ftp a schema1:Product ; rdfs:label "dbGaP Public Study Files" ; dcterms:description "Public FTP directory of released studies, one directory per phs accession and version, holding GapExchange study XML, data dictionaries, variable summaries, release notes, manifests and study documents. Individual-level data are not included." ; schema1:url . kgr:dbgap.gwas-analysis a schema1:Product ; rdfs:label "dbGaP GWAS Analysis Files" ; dcterms:description "Public FTP directory of GWAS analysis results and summary statistics released through dbGaP." ; schema1:url . kgr:dbgap.portal a schema1:GraphicalInterface ; rdfs:label "dbGaP Web Portal" ; dcterms:description "dbGaP web portal for searching and browsing studies, variables, datasets, documents and analyses, with study pages linking to public summaries and to the controlled-access request system." ; schema1:url . kgr:dbgap.sstr-api a schema1:ProgrammingInterface ; rdfs:label "dbGaP Study Metadata API" ; dcterms:description "dbGaP Study Metadata (SSTR) API returning JSON summaries of a study version, including name, BioProject links and consent groups, for example /api/v1/study/phs000001.v3.p1/summary." ; schema1:url . kgr:dbgap.submission-guide a schema1:DocumentationProduct ; rdfs:label "dbGaP Study Submission Guide" ; dcterms:description "dbGaP Study Submission Guide describing submission, data dictionaries, consent and file formats." ; schema1:url . kgr:dbnsfp.academic-portal a schema1:GraphicalInterface ; rdfs:label "dbNSFP Academic Portal" ; dcterms:description "Academic Portal for searching the full dbNSFP academic branch online, using the access code issued at academic registration." ; schema1:url . kgr:dbnsfp.browser a schema1:GraphicalInterface ; rdfs:label "dbNSFP Public Variant Browser" ; dcterms:description "dbNSFP Public Variant Browser, a free web interface for single-variant or small-batch lookups of dbNSFP annotations without downloading the database, with shareable permanent links to results." ; schema1:url . kgr:dbnsfp.dbscsnv a schema1:Product ; rdfs:label "dbscSNV v1.1" ; dcterms:description "dbscSNV v1.1, a companion database of all potential human SNVs within splicing consensus regions (-3 to +8 at the 5' splice site and -12 to +2 at the 3' splice site), with functional annotations and two ensemble scores (AdaBoost and random forest) predicting their potential to alter splicing, with hg19 and lifted-over hg38 positions. It can be attached to dbNSFP and queried with search_dbNSFP." ; schema1:url . kgr:dbnsfp.legacy a schema1:DocumentationProduct ; rdfs:label "dbNSFP Legacy Website" ; dcterms:description "Legacy dbNSFP website documenting versions 1.x through 4.x (up to v4.9, August 2024), with release notes and download links for past releases." ; schema1:url . kgr:dbnsfp.readme a schema1:DocumentationProduct ; rdfs:label "dbNSFP v5.4a README" ; dcterms:description "README for dbNSFP v5.4a, listing the license terms, every upstream data source with version and URL, the distributed files and usage of the search_dbNSFP program." ; schema1:url . kgr:dbnsfp.variant-columns a schema1:DocumentationProduct ; rdfs:label "dbNSFP v5.4a Variant Columns" ; dcterms:description "Column descriptions for the dbNSFP v5.4a variant table." ; schema1:url . kgr:dbpedia.ontology a schema1:OntologyProduct ; rdfs:label "DBpedia Ontology" ; dcterms:description "DBpedia ontology T-box download used to define the cross-domain schema and mappings applied during DBpedia extraction releases." ; schema1:url . kgr:dbpedia.portal a schema1:GraphicalInterface ; rdfs:label "DBpedia Web Portal" ; dcterms:description "Main DBpedia website with documentation, service links, and access points for DBpedia datasets and tooling." ; schema1:url . kgr:dbpedia.sparql a schema1:ProgrammingInterface ; rdfs:label "DBpedia SPARQL Endpoint" ; dcterms:description "Public SPARQL endpoint for querying the DBpedia knowledge graph." ; schema1:url . kgr:dbptm.portal a schema1:GraphicalInterface ; rdfs:label "dbPTM Web Portal" ; dcterms:description "dbPTM 2025 web portal for searching proteins, browsing PTM general information, and analyzing disease-associated PTMs, PTM crosstalk, drug-binding-associated PTM sites, and kinase activity profiles." ; schema1:url . kgr:dbsno.portal a schema1:GraphicalInterface ; rdfs:label "dbSNO Web Portal" ; dcterms:description "dbSNO 3.0 web portal for searching, browsing, and analyzing S-nitrosylated proteins, SNO sites, disease associations, SNO regulatory networks, and structural environments." ; schema1:url . kgr:dbsnp.api a schema1:ProgrammingInterface ; rdfs:label "dbSNP E-utilities API" ; dcterms:description "Programmatic access to dbSNP data via the NCBI E-utilities API" ; schema1:url . kgr:dbsnp.json a schema1:Product ; rdfs:label "dbSNP JSON Files" ; dcterms:description "JSON format files with dbSNP RefSNP data" ; schema1:url . kgr:dbsnp.site a schema1:GraphicalInterface ; rdfs:label "dbSNP Web Interface" ; dcterms:description "Web interface for searching and exploring dbSNP data" ; schema1:url . kgr:dbsnp.variation.api a schema1:ProgrammingInterface ; rdfs:label "NCBI Variation Services API" ; dcterms:description "NCBI Variation Services API for accessing and manipulating variant data" ; schema1:url . kgr:dbsuper.downloads a schema1:Product ; rdfs:label "dbSUPER Downloads" ; dcterms:description "Downloadable super-enhancer datasets in BED and other formats." ; schema1:url . kgr:dbsuper.site a schema1:GraphicalInterface ; rdfs:label "dbSUPER Website" ; dcterms:description "Web interface for browsing and searching super-enhancers across cell and tissue types." ; schema1:url . kgr:dbvar.ftp a schema1:Product ; rdfs:label "dbVar FTP Site" ; dcterms:description "FTP site hosting bulk downloads of dbVar structural variant call and region data files in multiple formats" ; schema1:url . kgr:dbvar.portal a schema1:GraphicalInterface ; rdfs:label "dbVar Portal" ; dcterms:description "Web portal for searching and browsing dbVar structural variation studies, variants, and genomic regions" ; schema1:url . kgr:dc.classes a schema1:DocumentationProduct ; rdfs:label "Dublin Core Classes" ; dcterms:description "Documentation for Dublin Core classes including Agent, BibliographicResource, FileFormat, Frequency, Jurisdiction, LicenseDocument, LinguisticSystem, Location, MediaType, and others." ; schema1:url . kgr:dc.dcmitype_rdf a schema1:DataModelProduct ; rdfs:label "DCMI Type Vocabulary RDF Schema" ; dcterms:description "RDF schema for the DCMI Type Vocabulary, defining classes for basic types (Collection, Dataset, Event, Image, InteractiveResource, MovingImage, PhysicalObject, Service, Software, Sound, StillImage, Text)." ; schema1:url dcmitype: . kgr:dc.elements_rdf a schema1:DataModelProduct ; rdfs:label "Dublin Core Elements RDF Schema" ; dcterms:description "RDF schema for Dublin Core elements in the /elements/1.1/ namespace." ; schema1:url dc: . kgr:dc.elements_spec a schema1:DocumentationProduct ; rdfs:label "Dublin Core Elements 1.1 Specification" ; dcterms:description "Documentation for the fifteen core Dublin Core elements in the /elements/1.1/ namespace (contributor, coverage, creator, date, description, format, identifier, language, publisher, relation, rights, source, subject, title, type)." ; schema1:url . kgr:dc.encoding_schemes a schema1:DocumentationProduct ; rdfs:label "Dublin Core Encoding Schemes" ; dcterms:description "Documentation for vocabulary encoding schemes (DCMIType, DDC, IMT, LCC, LCSH, MESH, NLM, TGN, UDC) and syntax encoding schemes (Box, ISO3166, ISO639-2, ISO639-3, Period, Point, RFC standards, URI, W3CDTF)." ; schema1:url . kgr:dc.kg-bioportal a schema1:GraphProduct ; rdfs:label "DC KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Dublin Core (DC), produced by KG-Bioportal from the BioPortal submission. The archive contains DC_nodes.tsv and DC_edges.tsv." ; schema1:url . kgr:dc.terms_rdf a schema1:DataModelProduct ; rdfs:label "Dublin Core Terms RDF Schema" ; dcterms:description "RDF schema for Dublin Core terms in the /terms/ namespace." ; schema1:url dcterms: . kgr:dc.terms_spec a schema1:DocumentationProduct ; rdfs:label "DCMI Metadata Terms Specification" ; dcterms:description "The DCMI Metadata Terms specification document, providing comprehensive documentation of all properties in the /terms/ namespace including abstract, accessRights, contributor, coverage, creator, date, description, format, identifier, language, publisher, relation, rights, subject, title, type, and many others." ; schema1:url . kgr:dc_cl.owl a schema1:OntologyProduct ; rdfs:label "Dendritic cell ontology OWL edition" ; dcterms:description "Canonical OWL edition of the Dendritic Cell Ontology distributed via OBO PURL." ; schema1:url . kgr:dcat.kg-bioportal a schema1:GraphProduct ; rdfs:label "DCAT KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Data Catalog Vocabulary (DCAT), produced by KG-Bioportal from the BioPortal submission. The archive contains DCAT_nodes.tsv and DCAT_edges.tsv." ; schema1:url . kgr:dcat.spec a schema1:DocumentationProduct ; rdfs:label "DCAT Version 3 Specification" ; dcterms:description "W3C Recommendation for Data Catalog Vocabulary version 3." ; schema1:url . kgr:dcat.ttl a schema1:DataModelProduct ; rdfs:label "DCAT Turtle Vocabulary" ; dcterms:description "Turtle serialization of the W3C Data Catalog Vocabulary namespace." ; schema1:url . kgr:dcdb.publication a schema1:DocumentationProduct ; rdfs:label "DCDB Publication" ; dcterms:description "Original publication describing the Drug Combination Database (DCDB), its curated drug combinations, components, and targets. Retained as primary documentation because the original host site is no longer available." ; schema1:url . kgr:dct.kg-bioportal a schema1:GraphProduct ; rdfs:label "DCT KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of DC Terms (DCT), produced by KG-Bioportal from the BioPortal submission. The archive contains DCT_nodes.tsv and DCT_edges.tsv." ; schema1:url . kgr:dct.rdf a schema1:DataModelProduct ; rdfs:label "Dublin Core Terms RDF Vocabulary" ; dcterms:description "RDF vocabulary endpoint for Dublin Core terms in the /terms/ namespace." ; schema1:url dcterms: . kgr:dct.spec a schema1:DocumentationProduct ; rdfs:label "Dublin Core Terms Specification" ; dcterms:description "Authoritative DCMI specification for Dublin Core metadata terms in the /terms/ namespace, including properties, classes, encoding schemes, and usage notes." ; schema1:url . kgr:ddanat.kg-bioportal a schema1:GraphProduct ; rdfs:label "DDANAT KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Dictyostelium Discoideum Anatomy Ontology (DDANAT), produced by KG-Bioportal from the BioPortal submission. The archive contains DDANAT_nodes.tsv and DDANAT_edges.tsv." ; schema1:url . kgr:ddanat.obo a schema1:OntologyProduct ; rdfs:label "ddanat.obo" ; dcterms:description "Dictyostelium discoideum anatomy in OBO format" ; schema1:url . kgr:ddanat.owl a schema1:OntologyProduct ; rdfs:label "ddanat.owl" ; dcterms:description "Dictyostelium discoideum anatomy in OWL format" ; schema1:url . kgr:ddbj.docs a schema1:DocumentationProduct ; rdfs:label "DDBJ Services and Documentation" ; dcterms:description "Index of DDBJ services with links to help pages for submission, search and retrieval tools." ; schema1:url . kgr:ddbj.jga a schema1:Product ; rdfs:label "Japanese Genotype-phenotype Archive (JGA)" ; dcterms:description "Japanese Genotype-phenotype Archive (JGA), a controlled-access archive for individual-level human genotype and phenotype data. Data use requires an application reviewed by the Database Center for Life Science (DBCLS); study, dataset and policy summaries are public in DDBJ Search." ; schema1:url . kgr:ddbj.portal a schema1:GraphicalInterface ; rdfs:label "DDBJ Portal" ; dcterms:description "DDBJ web portal with news, submission guides and links to the DDBJ, DRA, BioProject, BioSample, JGA, GEA and MetaboBank services." ; schema1:url . kgr:ddbj.rdf a schema1:GraphProduct ; rdfs:label "DDBJ-LD RDF" ; dcterms:description "DDBJ-LD, RDF (Turtle) versions of DDBJ nucleotide sequence releases and BioSample records, with current and archived releases, ontologies and a Virtuoso database dump." ; schema1:url . kgr:ddinter.ddi_annotations a schema1:Product ; rdfs:label "DDInter Drug-Drug Interaction Annotations" ; dcterms:description "Comprehensive drug-drug interaction annotations with mechanism descriptions, risk levels, management strategies, and alternative medication recommendations for clinical decision support." ; schema1:url . kgr:ddpheno.kg-bioportal a schema1:GraphProduct ; rdfs:label "DDPHENO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Dictyostelium Discoideum Phenotype Ontology (DDPHENO), produced by KG-Bioportal from the BioPortal submission. The archive contains DDPHENO_nodes.tsv and DDPHENO_edges.tsv." ; schema1:url . kgr:ddpheno.obo a schema1:OntologyProduct ; rdfs:label "ddpheno.obo" ; dcterms:description "Dictyostelium discoideum phenotype ontology in OBO format" ; schema1:url . kgr:ddpheno.owl a schema1:OntologyProduct ; rdfs:label "ddpheno.owl" ; dcterms:description "Dictyostelium discoideum phenotype ontology in OWL format" ; schema1:url . kgr:decipher.downloads a schema1:Product ; rdfs:label "DECIPHER downloadable data" ; dcterms:description "DECIPHER downloadable datasets, including aggregated patient variant and phenotype data and supporting genomic annotation files." ; schema1:url . kgr:decipher.web a schema1:GraphicalInterface ; rdfs:label "DECIPHER web platform" ; dcterms:description "DECIPHER web interface for browsing genomic variants, syndromes, and associated phenotypes in patients with rare developmental disorders." ; schema1:url . kgr:depmap.api a schema1:ProgrammingInterface ; rdfs:label "DepMap API" ; dcterms:description "DepMap portal API for programmatic access to portal data and metadata" ; schema1:url . kgr:depmap.cell_line_info a schema1:Product ; rdfs:label "DepMap Cell Line Information" ; dcterms:description "Comprehensive metadata and annotations for all DepMap cell lines" ; schema1:url . kgr:depmap.cell_line_selector a schema1:GraphicalInterface ; rdfs:label "DepMap Cell Line Selector" ; dcterms:description "Tool for exploring and selecting cancer cell lines based on various criteria" ; schema1:url . kgr:depmap.context_explorer a schema1:GraphicalInterface ; rdfs:label "DepMap Context Explorer" ; dcterms:description "Context Explorer tool for exploring enriched genetic dependencies and compound sensitivities across lineage and subtype contexts" ; schema1:url . kgr:depmap.copy_number a schema1:Product ; rdfs:label "DepMap Copy Number Data" ; dcterms:description "Copy number variation data for DepMap cell lines" ; schema1:url . kgr:depmap.crispr_gene_effects a schema1:Product ; rdfs:label "DepMap CRISPR Gene Effects (Chronos)" ; dcterms:description "CRISPR-Cas9 knockout screening data processed with Chronos algorithm to identify gene dependencies" ; schema1:url . kgr:depmap.data_explorer a schema1:GraphicalInterface ; rdfs:label "DepMap Data Explorer" ; dcterms:description "Interactive tool for exploring relationships across DepMap datasets and cell lines" ; schema1:url . kgr:depmap.downloads a schema1:Product ; rdfs:label "DepMap Data Downloads" ; dcterms:description "Complete collection of DepMap datasets available for download including CRISPR screens, drug screens, and omics data" ; schema1:url . kgr:depmap.expression_data a schema1:Product ; rdfs:label "DepMap Expression Data" ; dcterms:description "Gene expression data (RNA-seq) for DepMap cell lines" ; schema1:url . kgr:depmap.metabolomics a schema1:Product ; rdfs:label "DepMap Metabolomics Data" ; dcterms:description "Metabolomics data for DepMap cell lines" ; schema1:url . kgr:depmap.mutations a schema1:Product ; rdfs:label "DepMap Mutation Data" ; dcterms:description "Mutation data for DepMap cell lines" ; schema1:url . kgr:depmap.portal a schema1:GraphicalInterface ; rdfs:label "DepMap Portal" ; dcterms:description "Web portal for exploring cancer dependencies, cell line data, and biomarkers" ; schema1:url . kgr:depmap.proteomics a schema1:Product ; rdfs:label "DepMap Proteomics Data" ; dcterms:description "Proteomics data for DepMap cell lines" ; schema1:url . kgr:depmap.target_discovery a schema1:GraphicalInterface ; rdfs:label "DepMap Target Discovery" ; dcterms:description "Target Discovery App for identifying selective and predictable gene dependencies" ; schema1:url . kgr:dgidb.api a schema1:ProgrammingInterface ; rdfs:label "DGIdb API" ; dcterms:description "API for programmatically accessing the Drug Gene Interaction Database" ; schema1:url . kgr:dgv.downloads a schema1:Product ; rdfs:label "DGV Downloads" ; dcterms:description "Downloads of curated structural variant datasets by genome assembly." ; schema1:url . kgr:dgv.site a schema1:GraphicalInterface ; rdfs:label "DGV Web Interface" ; dcterms:description "Web interface for browsing and searching curated structural variants in the human genome." ; schema1:url . kgr:dictybase.annotations.gff a schema1:Product ; rdfs:label "dictyBase Genome Annotations" ; dcterms:description "Genome assembly and annotations in GFF format" ; schema1:url . kgr:dictybase.genome.browser a schema1:GraphicalInterface ; rdfs:label "dictyBase Genome Browser" ; dcterms:description "Web-based browser for exploring Dictyostelium genomes and annotations" ; schema1:url . kgr:dictybase.genome.fasta a schema1:Product ; rdfs:label "dictyBase Genome Sequences" ; dcterms:description "Genome sequence data in FASTA format" ; schema1:url . kgr:dictybase.graphql.api a schema1:ProgrammingInterface ; rdfs:label "dictyBase GraphQL API" ; dcterms:description "GraphQL API for programmatic access to dictyBase data" ; schema1:url . kgr:dictybase.proteins.fasta a schema1:Product ; rdfs:label "dictyBase Protein Sequences" ; dcterms:description "Protein sequence data in FASTA format" ; schema1:url . kgr:dideo.kg-bioportal a schema1:GraphProduct ; rdfs:label "DIDEO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Drug Interaction and Evidence Ontology (DIDEO), produced by KG-Bioportal from the BioPortal submission. The archive contains DIDEO_nodes.tsv and DIDEO_edges.tsv." ; schema1:url . kgr:dideo.owl a schema1:OntologyProduct ; rdfs:label "dideo.owl" ; dcterms:description "Drug-drug Interaction and Drug-drug Interaction Evidence Ontology in OWL format" ; schema1:url . kgr:digcfdekg.portal a schema1:GraphicalInterface ; rdfs:label "CFDE REVEAL Portal" ; dcterms:description "CFDE Knowledge Center web application for natural-language exploration of mechanistic leads, evidence, and hypothesis-generation workflows backed by the CFDE REVEAL graph." ; schema1:url . kgr:dinto.owl a schema1:OntologyProduct ; rdfs:label "dinto.owl" ; dcterms:description "The Drug-Drug Interactions Ontology in OWL format" ; schema1:url . kgr:dip.downloads a schema1:Product ; rdfs:label "DIP Data Downloads" ; dcterms:description "Complete DIP dataset and specialized subsets available for download in PSI-MI formats (registration required)" ; schema1:url . kgr:dip.search a schema1:GraphicalInterface ; rdfs:label "DIP Search Interface" ; dcterms:description "Web-based search interface for exploring protein-protein interactions by journal article, experimental evidence, or protein identifiers" ; schema1:url . kgr:disbiome.api a schema1:ProgrammingInterface ; rdfs:label "Disbiome Backend API" ; dcterms:description "Public JSON backend used by the Disbiome web application for experiments, diseases, organisms, publications, methods, and samples" ; schema1:url . kgr:disbiome.export a schema1:Product ; rdfs:label "Disbiome Data Export" ; dcterms:description "Export route in the Disbiome web application for downloading queried association data" ; schema1:url . kgr:disbiome.portal a schema1:GraphicalInterface ; rdfs:label "Disbiome Web Portal" ; dcterms:description "Web interface for searching and browsing Disbiome microbiome-disease associations, organisms, diseases, publications, samples, and statistics" ; schema1:url . kgr:disdriv.kg-bioportal a schema1:GraphProduct ; rdfs:label "DISDRIV KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Disease Drivers Ontology (DISDRIV), produced by KG-Bioportal from the BioPortal submission. The archive contains DISDRIV_nodes.tsv and DISDRIV_edges.tsv." ; schema1:url . kgr:disdriv.owl a schema1:OntologyProduct ; rdfs:label "disdriv.owl" ; dcterms:description "Disease Drivers Ontology in OWL format" ; schema1:url . kgr:diseases.dictionary a schema1:Product ; rdfs:label "DISEASES Dictionary" ; dcterms:description "Dictionary of human gene and disease names for the DISEASES tagger" ; schema1:url . kgr:diseases.experiments-filtered a schema1:Product ; rdfs:label "Experiments Channel (Filtered)" ; dcterms:description "Disease-gene associations from experimental data channel including cancer mutations and GWAS with source scores and confidence scores (filtered non-redundant)" ; schema1:url . kgr:diseases.experiments-full a schema1:Product ; rdfs:label "Experiments Channel (Full)" ; dcterms:description "Disease-gene associations from experimental data channel including cancer mutations and GWAS with source scores and confidence scores (full dataset)" ; schema1:url . kgr:diseases.integrated-full a schema1:Product ; rdfs:label "Integrated Channel (Full)" ; dcterms:description "Experimental integrated channel combining evidence from all sources (full dataset)" ; schema1:url . kgr:diseases.knowledge-filtered a schema1:Product ; rdfs:label "Knowledge Channel (Filtered)" ; dcterms:description "Disease-gene associations from manually curated knowledge channel with evidence types and confidence scores (filtered non-redundant)" ; schema1:url . kgr:diseases.knowledge-full a schema1:Product ; rdfs:label "Knowledge Channel (Full)" ; dcterms:description "Disease-gene associations from manually curated knowledge channel with evidence types and confidence scores (full dataset)" ; schema1:url . kgr:diseases.portal a schema1:GraphicalInterface ; rdfs:label "DISEASES Web Search" ; dcterms:description "Web search interface for querying human genes and diseases to view integrated evidence from multiple channels" ; schema1:url . kgr:diseases.textmining-filtered a schema1:Product ; rdfs:label "Text Mining Channel (Filtered)" ; dcterms:description "Disease-gene associations from text mining channel with z-scores and confidence scores (filtered non-redundant)" ; schema1:url . kgr:diseases.textmining-full a schema1:Product ; rdfs:label "Text Mining Channel (Full)" ; dcterms:description "Disease-gene associations from text mining channel with z-scores and confidence scores (full dataset)" ; schema1:url . kgr:disgenet.api a schema1:ProgrammingInterface ; rdfs:label "DisGeNET API" ; dcterms:description "API access to DisGeNET data (requires registration and subscription)." ; schema1:url . kgr:disgenet.browser a schema1:GraphicalInterface ; rdfs:label "DisGeNET Browser" ; dcterms:description "Browser for DisGeNET data (requires registration and subscription)." ; schema1:url . kgr:disprot.api a schema1:ProgrammingInterface ; rdfs:label "DisProt API" ; dcterms:description "RESTful API for programmatic access to DisProt data" ; schema1:url . kgr:disprot.browser a schema1:GraphicalInterface ; rdfs:label "DisProt Browser" ; dcterms:description "Web interface for browsing and searching intrinsically disordered protein annotations with search filters and organism browsing" ; schema1:url . kgr:disprot.deposition a schema1:GraphicalInterface ; rdfs:label "DisProt Deposition System" ; dcterms:description "Deposition system for submitting experimental data on intrinsically disordered proteins" ; schema1:url . kgr:dmd.browser a schema1:GraphicalInterface ; rdfs:label "dm+d Browser" ; dcterms:description "Official NHSBSA browser for searching and viewing dm+d medicines and device concepts." ; schema1:url . kgr:dmd.raw-files a schema1:Product ; rdfs:label "dm+d Raw Data Files" ; dcterms:description "Raw dm+d data files distributed as XML for system implementation and terminology integration." ; schema1:url . kgr:dmd.terminology-server a schema1:ProgrammingInterface ; rdfs:label "dm+d Terminology Server Access" ; dcterms:description "NHS Terminology Server access route recommended by NHS England for integrating dm+d terminology into healthcare IT systems." ; schema1:url . kgr:doaf.framework-publication a schema1:DocumentationProduct ; rdfs:label "DOAF Framework Publication" ; dcterms:description "PLOS ONE article describing the Disease Ontology Annotation Framework and its use for disease annotation." ; schema1:url . kgr:docm.data.sql a schema1:ProcessProduct ; rdfs:label "DoCM SQL Database" ; dcterms:description "Complete DoCM database in SQL format for local installation" ; schema1:url . kgr:docm.variants.tsv a schema1:Product ; rdfs:label "DoCM Variants TSV" ; dcterms:description "Curated cancer mutations in tab-separated values format with gene, transcript, variant, and disease information" ; schema1:url . kgr:docm.variants.vcf a schema1:Product ; rdfs:label "DoCM Variants VCF" ; dcterms:description "Curated cancer mutations in Variant Call Format (VCF)" ; schema1:url . kgr:doco.owl a schema1:OntologyProduct ; rdfs:label "DOCO Ontology (OWL)" ; dcterms:description "DOCO ontology in OWL/RDF format" ; schema1:url . kgr:dog10k.browser a schema1:GraphicalInterface ; rdfs:label "Dog10K database" ; dcterms:description "The Dog10K database web interface, providing browsing of canine multi-omics data including variation, de novo mutations, single-cell RNA sequencing, and transcriptomic data." ; schema1:url . kgr:dog10k.variants a schema1:Product ; rdfs:label "Dog10K variant files" ; dcterms:description "Variant call files and associated annotations from the Dog10K consortium, covering single nucleotide variants, copy number variants, and structural variants across sequenced canids." ; schema1:url . kgr:dog10k.zenodo a schema1:Product ; rdfs:label "Dog10K variant data archive" ; dcterms:description "An archived release of Dog10K variant data and annotations deposited on Zenodo." ; schema1:url . kgr:doid.kg-bioportal a schema1:GraphProduct ; rdfs:label "DOID KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Human Disease Ontology (DOID), produced by KG-Bioportal from the BioPortal submission. The archive contains DOID_nodes.tsv and DOID_edges.tsv." ; schema1:url . kgr:doid.obo a schema1:OntologyProduct ; rdfs:label "Disease Ontology, OBO format. This file omits the equivalent axioms." ; dcterms:description "Disease Ontology, OBO format. This file omits the equivalent axioms." ; schema1:url . kgr:doid.owl a schema1:OntologyProduct ; rdfs:label "Disease Ontology, OWL format. This file contains DO's is_a asserted hierarchy plus equivalent axioms to other OBO Foundry ontologies." ; dcterms:description "Disease Ontology, OWL format. This file contains DO's is_a asserted hierarchy plus equivalent axioms to other OBO Foundry ontologies." ; schema1:url . kgr:dolce.d18 a schema1:DocumentationProduct ; rdfs:label "WonderWeb Deliverable D18" ; dcterms:description "WonderWeb Deliverable D18, the final first-order axiomatization of DOLCE and the official reference documentation, together with the WonderWeb Foundational Ontologies Library." ; schema1:url . kgr:dolce.dul a schema1:OntologyProduct ; rdfs:label "DOLCE+DnS Ultralite (DUL)" ; dcterms:description "DOLCE+DnS Ultralite (DUL) version 4.2, a lightweight, pattern-based simplification and extension of DOLCE Lite-Plus by Aldo Gangemi, served as Turtle from the Ontology Design Patterns portal. Extensions such as IOLite, SystemsLite and PlansLite are published alongside it." ; schema1:url . kgr:dolce.iso-clif a schema1:OntologyProduct ; rdfs:label "DOLCE Simple CLIF (ISO/IEC 21838-3)" ; dcterms:description "Common Logic (CLIF) axiomatization of DOLCE Simple published as an electronic insert of ISO/IEC 21838-3:2023. Use is governed by the ISO Customer Licence Agreement for electronic inserts." ; schema1:url . kgr:dolce.iso-owl a schema1:OntologyProduct ; rdfs:label "DOLCE OWL (ISO/IEC 21838-3)" ; dcterms:description "OWL 2 axiomatization of DOLCE (functional syntax) published as an electronic insert of ISO/IEC 21838-3:2023, engineered by Laure Vieu and Daniele Porello from DOLCE Simple in CASL. Use is governed by the ISO Customer Licence Agreement for electronic inserts." ; schema1:url . kgr:dolce.lite a schema1:OntologyProduct ; rdfs:label "DOLCE-Lite OWL" ; dcterms:description "DOLCE-Lite, an OWL (RDF/XML) re-engineering of DOLCE by Aldo Gangemi and colleagues. It omits modality and temporal indexing." ; schema1:url . kgr:dolce.lite-plus a schema1:OntologyProduct ; rdfs:label "DOLCE Lite-Plus 3.97 Library" ; dcterms:description "DOLCE Lite-Plus library (version 3.97), a zip of OWL modules extending DOLCE-Lite with Descriptions and Situations, plans, information objects and other modules." ; schema1:url . kgr:dolce.overview a schema1:DocumentationProduct ; rdfs:label "DOLCE Overview" ; dcterms:description "LOA overview page for DOLCE, with links to its formalizations, documentation and related papers." ; schema1:url . kgr:dorothea.docs a schema1:DocumentationProduct ; rdfs:label "DoRothEA Documentation" ; dcterms:description "Project documentation, usage examples, and methodological notes" ; schema1:url . kgr:dorothea.r-package a schema1:ProcessProduct ; rdfs:label "DoRothEA R Package" ; dcterms:description "Bioconductor R data package containing human and mouse regulons for TF activity inference" ; schema1:url . kgr:dpo.json a schema1:OntologyProduct ; rdfs:label "dpo.json" ; dcterms:description "Drosophila Phenotype Ontology in JSON format" ; schema1:url . kgr:dpo.kg-bioportal a schema1:GraphProduct ; rdfs:label "DPO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Drosophila Phenotype Ontology (DPO), produced by KG-Bioportal from the BioPortal submission. The archive contains DPO_nodes.tsv and DPO_edges.tsv." ; schema1:url . kgr:dpo.obo a schema1:OntologyProduct ; rdfs:label "dpo.obo" ; dcterms:description "Drosophila Phenotype Ontology in OBO format" ; schema1:url . kgr:dpo.owl a schema1:OntologyProduct ; rdfs:label "dpo.owl" ; dcterms:description "Drosophila Phenotype Ontology in OWL format" ; schema1:url . kgr:dreamkg.sparql a schema1:ProgrammingInterface ; rdfs:label "DREAM-KG SPARQL" ; dcterms:description "SPARQL endpoint for DREAM-KG" ; schema1:url . kgr:dreamkg.tpf a schema1:ProgrammingInterface ; rdfs:label "DREAM-KG TPF" ; dcterms:description "Triple Pattern Fragments endpoint for DREAM-KG" ; schema1:url . kgr:dron.owl a schema1:OntologyProduct ; rdfs:label "dron.owl" ; dcterms:description "The Drug Ontology in OWL format" ; schema1:url . kgr:drugbank.academic a schema1:DataModelProduct ; rdfs:label "DrugBank Academic Downloads" ; dcterms:description "Academic access to DrugBank database dumps in XML and other formats" ; schema1:url . kgr:drugbank.clinical.api a schema1:ProgrammingInterface ; rdfs:label "DrugBank Clinical API" ; dcterms:description "Clinical API for integrating DrugBank data into healthcare applications" ; schema1:url . kgr:drugbank.web a schema1:GraphicalInterface ; rdfs:label "DrugBank Online" ; dcterms:description "Web interface for browsing and searching the DrugBank database" ; schema1:url . kgr:drugcentral.data a schema1:Product ; rdfs:label "DrugCentral Database dump" ; dcterms:description "PostgreSQL (v14.5) database dump of all information in DrugCentral." ; schema1:url . kgr:drugmechdb.web a schema1:GraphicalInterface ; rdfs:label "DrugMechDB Website" ; dcterms:description "Web interface for exploring curated DrugMechDB paths by drug and disease." ; schema1:url . kgr:dsmz-leibniz-institute-dsmz-german-collection-of-m a "Organization" ; rdfs:label "BacDive" . kgr:dsstoxdb.api a schema1:ProgrammingInterface ; rdfs:label "EPA CompTox API" ; dcterms:description "Public CTX API documentation for programmatic access to DSSTox chemical data and computational toxicology information; individual API keys are required" ; schema1:url . kgr:dsstoxdb.chemical-api a schema1:ProgrammingInterface ; rdfs:label "CompTox API" ; dcterms:description "Public API for programmatic access to DSSTox data" ; schema1:url . kgr:dsstoxdb.dashboard a schema1:GraphicalInterface ; rdfs:label "CompTox Chemicals Dashboard" ; dcterms:description "Web-based interface for searching over 1.2 million chemicals with integrated toxicity, bioactivity, and exposure data" ; schema1:url . kgr:dsstoxdb.description a schema1:DocumentationProduct ; rdfs:label "DSSToxDB Description" ; dcterms:description "Documentation for the DSSTox database" ; schema1:url . kgr:duo.kg-bioportal a schema1:GraphProduct ; rdfs:label "DUO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of The Data Use Ontology (DUO), produced by KG-Bioportal from the BioPortal submission. The archive contains DUO_nodes.tsv and DUO_edges.tsv." ; schema1:url . kgr:duo.owl a schema1:OntologyProduct ; rdfs:label "duo.owl" ; dcterms:description "Data Use Ontology in OWL format" ; schema1:url . kgr:earthportal.annotator a schema1:ProcessProduct ; rdfs:label "EarthPortal Annotator" ; dcterms:description "Text annotation service that tags free text with concepts from the semantic artefacts hosted in EarthPortal, available through the portal and the REST API." ; schema1:url . kgr:earthportal.api-docs a schema1:DocumentationProduct ; rdfs:label "EarthPortal API Documentation" ; dcterms:description "Documentation for the EarthPortal REST API, listing endpoints and parameters." ; schema1:url . kgr:earthportal.sparql a schema1:ProgrammingInterface ; rdfs:label "EarthPortal SPARQL Endpoint" ; dcterms:description "Virtuoso SPARQL endpoint over the RDF content of the artefacts hosted in EarthPortal, with a query editor in the portal." ; schema1:url . kgr:earthportal.wiki a schema1:DocumentationProduct ; rdfs:label "EarthPortal Wiki" ; dcterms:description "EarthPortal management wiki, including citation guidance, plus release notes in the EarthPortal documentation repository." ; schema1:url . kgr:ebrains.api.core a schema1:ProgrammingInterface ; rdfs:label "EBRAINS KG Core API" ; dcterms:description "Interface for accessing the EBRAINS KG (also known as the MarmotGraph API)" ; schema1:url . kgr:ebrains.graph a schema1:GraphProduct ; rdfs:label "EBRAINS Knowledge Graph" ; dcterms:description "The EBRAINS Knowledge Graph itself, a metadata graph cataloging neuroscience datasets, models, and software contributed by researchers within the EBRAINS research infrastructure, accessed through the KG search interface." ; schema1:url . kgr:ebrains.stats a schema1:GraphicalInterface ; rdfs:label "KG Statistics" ; dcterms:description "A visualization of the contents of the EBRAINS knowledge graph." ; schema1:url . kgr:ec.database a schema1:GraphicalInterface ; rdfs:label "Enzyme Commission Official Database" ; dcterms:description "Official Enzyme Commission nomenclature and EC number database" ; schema1:url . kgr:ecao.kg-bioportal a schema1:GraphProduct ; rdfs:label "ECAO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of The Echinoderm Anatomy and Development Ontology (ECAO), produced by KG-Bioportal from the BioPortal submission. The archive contains ECAO_nodes.tsv and ECAO_edges.tsv." ; schema1:url . kgr:ecao.obo a schema1:OntologyProduct ; rdfs:label "ecao.obo" ; dcterms:description "The Echinoderm Anatomy and Development Ontology in OBO format" ; schema1:url . kgr:ecao.owl a schema1:OntologyProduct ; rdfs:label "ecao.owl" ; dcterms:description "The Echinoderm Anatomy and Development Ontology in OWL format" ; schema1:url . kgr:ecid.bloodexposome.data a schema1:Product ; rdfs:label "Blood Exposome Database" ; dcterms:description "Catalogues chemicals expected and detected in human blood specimens." ; schema1:url . kgr:ecid.ccdb.site a schema1:GraphicalInterface ; rdfs:label "CCDB" ; dcterms:description "Interface for the Chemical Correlation Database for exploring curated inter-chemical correlations" ; schema1:url . kgr:ecid.compound.lists a schema1:Product ; rdfs:label "ECID Compound Lists" ; dcterms:description "Compound lists from 73 untargeted datasets with 3,329 unique 2D structures." ; schema1:url . kgr:ecid.dataset.list a schema1:Product ; rdfs:label "ECID Dataset List" ; dcterms:description "Selected datasets (n=289) for computing and curating inter-chemical correlations." ; schema1:url . kgr:ecid.echo.analyte.list a schema1:Product ; rdfs:label "ECHO Analyte List" ; dcterms:description "Chemical analytes reported for the ECHO cohort measured by targeted assays." ; schema1:url . kgr:ecid.edir.site a schema1:GraphicalInterface ; rdfs:label "EDIR" ; dcterms:description "Interface for Exposome Data Interpretation Resource for interpreting inter-chemical correlations" ; schema1:url . kgr:ecid.hhear.analyte.list a schema1:Product ; rdfs:label "HHEAR Analyte List" ; dcterms:description "Analytes measured by targeted assays for the NIEHS HHEAR program." ; schema1:url . kgr:ecid.metabolomics.data.dictionary a schema1:Product ; rdfs:label "Metabolomics Data Dictionary" ; dcterms:description "Metabolite and chemical names reported by Metabolon Inc. in PMC articles." ; schema1:url . kgr:ecid.metabolomics.workbench.dictionary a schema1:Product ; rdfs:label "Metabolomics WorkBench Compound Dictionary" ; dcterms:description "mwTAB files processed to yield curated compound names and identifiers." ; schema1:url . kgr:ecid.nhanes.analyte.list a schema1:Product ; rdfs:label "NHANES Analyte List" ; dcterms:description "Chemical analytes reported by the NHANES biomonitoring survey." ; schema1:url . kgr:eco.kg-bioportal a schema1:GraphProduct ; rdfs:label "ECO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Evidence and Conclusion Ontology (ECO), produced by KG-Bioportal from the BioPortal submission. The archive contains ECO_nodes.tsv and ECO_edges.tsv." ; schema1:url . kgr:eco.obo a schema1:OntologyProduct ; rdfs:label "eco.obo" ; dcterms:description "Evidence and Conclusion Ontology in OBO format" ; schema1:url . kgr:eco.owl a schema1:OntologyProduct ; rdfs:label "eco.owl" ; dcterms:description "Evidence and Conclusion Ontology in OWL format" ; schema1:url . kgr:ecocore.kg-bioportal a schema1:GraphProduct ; rdfs:label "ECOCORE KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of An ontology of core ecological entities (ECOCORE), produced by KG-Bioportal from the BioPortal submission. The archive contains ECOCORE_nodes.tsv and ECOCORE_edges.tsv." ; schema1:url . kgr:ecocore.obo a schema1:OntologyProduct ; rdfs:label "ecocore.obo" ; dcterms:description "An ontology of core ecological entities in OBO format" ; schema1:url . kgr:ecocore.owl a schema1:OntologyProduct ; rdfs:label "ecocore.owl" ; dcterms:description "An ontology of core ecological entities in OWL format" ; schema1:url . kgr:ecocyc.api a schema1:ProgrammingInterface ; rdfs:label "EcoCyc Web Services" ; dcterms:description "Web services and APIs for programmatic access to EcoCyc data" ; schema1:url . kgr:ecocyc.metabolic_model a schema1:ProcessProduct ; rdfs:label "EcoCyc Metabolic Model" ; dcterms:description "Metabolic model for E. coli K-12 derived from EcoCyc" ; schema1:url . kgr:ecocyc.web a schema1:GraphicalInterface ; rdfs:label "EcoCyc Web Interface" ; dcterms:description "Web interface for EcoCyc database" ; schema1:url . kgr:ecoportal.docs a schema1:DocumentationProduct ; rdfs:label "EcoPortal User Guide" ; dcterms:description "EcoPortal user guide in the OntoPortal documentation, covering browsing, search, submission, the annotator and recommender, and API use." ; schema1:url . kgr:ecoportal.manual a schema1:DocumentationProduct ; rdfs:label "EcoPortal Documentation 2.0" ; dcterms:description "EcoPortal Documentation (Version 2.0), a LifeWatch ERIC manual describing the portal and its services, published with a DataCite DOI." ; schema1:url . kgr:ecosim.kg-bioportal a schema1:GraphProduct ; rdfs:label "ECOSIM KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of ecosim ontology (ECOSIM), produced by KG-Bioportal from the BioPortal submission. The archive contains ECOSIM_nodes.tsv and ECOSIM_edges.tsv." ; schema1:url . kgr:ecosim.model.owl a schema1:Product ; rdfs:label "ecosim OWL release" ; dcterms:description "OWL release of ecosim" . kgr:ecrin-mdr.code a schema1:ProcessProduct ; rdfs:label "ECRIN MDR Source Code" ; dcterms:description "ECRIN GitHub organization holding the MDR code, including the downloader, harvester, importer, coder and aggregator pipeline, the Blazor portal and API (MDR_FuiPortal), and MDRMine, an InterMine-based successor that also loads EU CTR, CTIS, WHO ICTRP, BioLINCC and BBMRI-ERIC data." ; schema1:url . kgr:ecrin-mdr.schema a schema1:DataModelProduct ; rdfs:label "ECRIN Metadata Schemas for Clinical Research" ; dcterms:description "ECRIN Metadata Schemas for Clinical Research, version 8 (September 2023), the common metadata model for studies and data objects used by the MDR, distributed as a Word document on Zenodo." ; schema1:url . kgr:ecso.github a schema1:GraphicalInterface ; rdfs:label "DataONE sem-prov-ontologies GitHub Repository" ; dcterms:description "GitHub repository for DataONE semantic and provenance ontologies, containing ECSO source files, development notes and term practices" ; schema1:url . kgr:ecso.kg-bioportal a schema1:GraphProduct ; rdfs:label "ECSO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of The Ecosystem Ontology (ECSO), produced by KG-Bioportal from the BioPortal submission. The archive contains ECSO_nodes.tsv and ECSO_edges.tsv." ; schema1:url . kgr:ecto.ecto-base.json a schema1:OntologyProduct ; rdfs:label "ecto.ecto-base.json" ; dcterms:description "Environmental conditions, treatments and exposures ontology in JSON format" ; schema1:url . kgr:ecto.ecto-base.obo a schema1:OntologyProduct ; rdfs:label "ecto.ecto-base.obo" ; dcterms:description "Environmental conditions, treatments and exposures ontology in OBO format" ; schema1:url . kgr:ecto.ecto-base.owl a schema1:OntologyProduct ; rdfs:label "ecto.ecto-base.owl" ; dcterms:description "Environmental conditions, treatments and exposures ontology in OWL format" ; schema1:url . kgr:ecto.json a schema1:OntologyProduct ; rdfs:label "ecto.json" ; dcterms:description "Environmental conditions, treatments and exposures ontology in JSON format" ; schema1:url . kgr:ecto.kg-bioportal a schema1:GraphProduct ; rdfs:label "ECTO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Environmental conditions, treatments and exposures ontology (ECTO), produced by KG-Bioportal from the BioPortal submission. The archive contains ECTO_nodes.tsv and ECTO_edges.tsv." ; schema1:url . kgr:ecto.obo a schema1:OntologyProduct ; rdfs:label "ecto.obo" ; dcterms:description "Environmental conditions, treatments and exposures ontology in OBO format" ; schema1:url . kgr:ecto.owl a schema1:OntologyProduct ; rdfs:label "ecto.owl" ; dcterms:description "Environmental conditions, treatments and exposures ontology in OWL format" ; schema1:url . kgr:edam.kg-bioportal a schema1:GraphProduct ; rdfs:label "EDAM KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of EDAM - The ontology of data analysis and management (EDAM), produced by KG-Bioportal from the BioPortal submission. The archive contains EDAM_nodes.tsv and EDAM_edges.tsv." ; schema1:url . kgr:edrr-invasive-catalog.dataset a schema1:Product ; rdfs:label "EDRR Invasive Species Databases and Tools Catalog (Version 2.0)" ; dcterms:description "USGS ScienceBase data release containing the catalog of U.S. federal early detection/rapid response invasive species databases and tools, distributed as tabular spreadsheet data with metadata." ; schema1:url . kgr:effas-kpi.document a schema1:DocumentationProduct ; rdfs:label "KPIs for ESG 3.0 (Final)" ; dcterms:description "Official \"KPIs for ESG 3.0\" framework document (PDF) defining the ESG Key Performance Indicator vocabulary." ; schema1:url . kgr:effas-kpi.landing a schema1:GraphicalInterface ; rdfs:label "EFFAS/DVFA KPIs for ESG 3.0 Page" ; dcterms:description "EFFAS announcement and landing page for the KPIs for ESG 3.0 exposure draft and framework." ; schema1:url . kgr:efo.ols a schema1:GraphicalInterface ; rdfs:label "EFO in OLS" ; dcterms:description "Browse EFO with EBI's Ontology Lookup Service (OLS)" ; schema1:url . kgr:ega.fega a schema1:DocumentationProduct ; rdfs:label "Federated EGA" ; dcterms:description "Overview of Federated EGA, the network of national EGA nodes that store sensitive human data locally while sharing metadata and access processes with the central EGA." ; schema1:url . kgr:ega.metadata-api a schema1:ProgrammingInterface ; rdfs:label "EGA Public Metadata API" ; dcterms:description "Public Metadata REST API returning JSON metadata for EGA studies, datasets, DACs, policies, samples, experiments, runs and analyses by accession (EGAS, EGAD, EGAC, EGAP, EGAN, EGAX, EGAR, EGAZ), with cross-queries between object types. Authenticated users can also query private metadata they have rights to." ; schema1:url . kgr:ega.metadata-api.docs a schema1:DocumentationProduct ; rdfs:label "EGA Public Metadata API Documentation" ; dcterms:description "Documentation for the EGA Public Metadata API, covering identifiers, requests, responses and cross-querying by object." ; schema1:url . kgr:ega.portal a schema1:GraphicalInterface ; rdfs:label "EGA Web Portal" ; dcterms:description "EGA web portal for discovering studies, datasets and Data Access Committees, and for requesting access to controlled datasets. File access requires approval from the dataset's DAC." ; schema1:url . kgr:ega.pyega3 a schema1:ProcessProduct ; rdfs:label "PyEGA3 Download Client" ; dcterms:description "PyEGA3, the Python command-line client for downloading controlled-access EGA files that a user has been granted access to. Distributed on PyPI as pyega3." ; schema1:url . kgr:eggnog.download a schema1:Product ; rdfs:label "eggNOG Downloads" ; dcterms:description "Download interface for eggNOG annotation and orthology data releases." ; schema1:url . kgr:eggnog.download.e7.clu2ogs a schema1:Product ; rdfs:label "eggNOG 7 Protein Family to OGs" ; dcterms:description "Table listing orthologous groups per protein family." ; schema1:url . kgr:eggnog.download.e7.og-fasta-sequences a schema1:Product ; rdfs:label "eggNOG 7 OG FASTA Sequences" ; dcterms:description "Tar archive containing orthologous group FASTA sequence files." ; schema1:url . kgr:eggnog.download.e7.og-info-kegg-go a schema1:Product ; rdfs:label "eggNOG 7 OG Info (KEGG/GO)" ; dcterms:description "Orthologous group information table including KEGG and GO annotations." ; schema1:url . kgr:eggnog.download.e7.protein-families a schema1:Product ; rdfs:label "eggNOG 7 Protein Families" ; dcterms:description "Protein family information table." ; schema1:url . kgr:eggnog.download.e7.proteins a schema1:Product ; rdfs:label "eggNOG 7 Proteins" ; dcterms:description "All protein sequences covered in eggNOG 7." ; schema1:url . kgr:eggnog.download.e7.taxid-info a schema1:Product ; rdfs:label "eggNOG 7 Taxonomic Information" ; dcterms:description "Taxonomic information table for genomes included in eggNOG 7." ; schema1:url . kgr:eggnog.download.e7.trees a schema1:Product ; rdfs:label "eggNOG 7 Protein Family Trees" ; dcterms:description "Protein family phylogenetic trees table." ; schema1:url . kgr:eggnog.portal a schema1:GraphicalInterface ; rdfs:label "eggNOG Portal" ; dcterms:description "Main web interface for browsing orthologous groups and functional annotations." ; schema1:url . kgr:ehda.kg-bioportal a schema1:GraphProduct ; rdfs:label "EHDA KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Human Developmental Anatomy Ontology, timed version (EHDA), produced by KG-Bioportal from the BioPortal submission. The archive contains EHDA_nodes.tsv and EHDA_edges.tsv." ; schema1:url . kgr:ehdaa.kg-bioportal a schema1:GraphProduct ; rdfs:label "EHDAA KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Human Developmental Anatomy Ontology, abstract version 1 (EHDAA), produced by KG-Bioportal from the BioPortal submission. The archive contains EHDAA_nodes.tsv and EHDAA_edges.tsv." ; schema1:url . kgr:ehdaa.obo a schema1:OntologyProduct ; rdfs:label "ehdaa.obo" ; dcterms:description "Human developmental anatomy, abstract version in OBO format" ; schema1:url . kgr:ehdaa.owl a schema1:OntologyProduct ; rdfs:label "ehdaa.owl" ; dcterms:description "Human developmental anatomy, abstract version in OWL format" ; schema1:url . kgr:ehdaa2.kg-bioportal a schema1:GraphProduct ; rdfs:label "EHDAA2 KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Human Developmental Anatomy Ontology, abstract version 2 (EHDAA2), produced by KG-Bioportal from the BioPortal submission. The archive contains EHDAA2_nodes.tsv and EHDAA2_edges.tsv." ; schema1:url . kgr:ehdaa2.obo a schema1:OntologyProduct ; rdfs:label "ehdaa2.obo" ; dcterms:description "Human developmental anatomy, abstract in OBO format" ; schema1:url . kgr:ehdaa2.owl a schema1:OntologyProduct ; rdfs:label "ehdaa2.owl" ; dcterms:description "Human developmental anatomy, abstract in OWL format" ; schema1:url . kgr:ehrlink.publication a schema1:DocumentationProduct ; rdfs:label "EHRLink Methodology Publication" ; dcterms:description "Publication describing the crowdsourcing methodology used to identify relationships between clinical problems and medications in EHRLink." ; schema1:url . kgr:ema.article-57 a schema1:Product ; rdfs:label "EMA Article 57 Authorised Medicines Data" ; dcterms:description "Public data from the EMA Article 57 database on all medicines authorised in the European Union." ; schema1:url . kgr:ema.medicine-data a schema1:Product ; rdfs:label "EMA Downloadable Medicine Data" ; dcterms:description "EMA downloadable medicine data tables covering human medicines, veterinary medicines, opinions for medicines used outside the EU, and herbal medicines." ; schema1:url . kgr:ema.medicines a schema1:GraphicalInterface ; rdfs:label "EMA Medicines Portal" ; dcterms:description "EMA medicines portal for searching centrally authorised medicines, medicines under evaluation, herbal medicines, EPARs, product information, and other regulatory medicine records." ; schema1:url . kgr:emap.kg-bioportal a schema1:GraphProduct ; rdfs:label "EMAP KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Mouse Gross Anatomy and Development Ontology (EMAP), produced by KG-Bioportal from the BioPortal submission. The archive contains EMAP_nodes.tsv and EMAP_edges.tsv." ; schema1:url . kgr:emap.owl a schema1:OntologyProduct ; rdfs:label "emap.owl" ; dcterms:description "Mouse gross anatomy and development, timed in OWL format" ; schema1:url . kgr:emapa.kg-bioportal a schema1:GraphProduct ; rdfs:label "EMAPA KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Mouse gross anatomy and development, timed (EMAPA), produced by KG-Bioportal from the BioPortal submission. The archive contains EMAPA_nodes.tsv and EMAPA_edges.tsv." ; schema1:url . kgr:emapa.obo a schema1:OntologyProduct ; rdfs:label "emapa.obo" ; dcterms:description "Mouse Developmental Anatomy Ontology in OBO format" ; schema1:url . kgr:emapa.owl a schema1:OntologyProduct ; rdfs:label "emapa.owl" ; dcterms:description "Mouse Developmental Anatomy Ontology in OWL format" ; schema1:url . kgr:embiology.web a schema1:GraphicalInterface ; rdfs:label "EmBiology Web Interface" ; dcterms:description "Web interface for exploring biological relationships in EmBiology" ; schema1:url . kgr:emeraldgraph.datasets a schema1:Product ; rdfs:label "EmeraldMind processed datasets" ; dcterms:description "Processed greenwashing claim and EmeraldData datasets used by EmeraldMind experiments." ; schema1:url . kgr:emeraldgraph.pipeline a schema1:ProcessProduct ; rdfs:label "EmeraldGraph construction pipeline" ; dcterms:description "Source code for constructing EmeraldGraph, loading it into Neo4j, and using it in the EmeraldMind greenwashing-detection workflow." ; schema1:url . kgr:emeraldgraph.schema a schema1:DataModelProduct ; rdfs:label "EmeraldGraph schema" ; dcterms:description "EmeraldGraph schema definitions used by the construction pipeline to validate relationship and classification logic." ; schema1:url . kgr:emeraldgraph.zenodo-archive a schema1:Product ; rdfs:label "EmeraldMind Zenodo archive" ; dcterms:description "Archived release of the EmeraldMind repository and associated EmeraldGraph artifacts on Zenodo." ; schema1:url . kgr:emerge.nhgri-project-page a schema1:DocumentationProduct ; rdfs:label "NHGRI eMERGE Project Page" ; dcterms:description "NHGRI project page summarizing eMERGE as an NIH-organized and funded consortium for combining biorepositories and electronic medical record systems in genomic medicine research." ; schema1:url . kgr:emerge.portal a schema1:GraphicalInterface ; rdfs:label "eMERGE Network Website" ; dcterms:description "eMERGE Network website describing network phases, study sites, working groups, genomic medicine implementation activities, and consortium resources." ; schema1:url . kgr:emi.ttl a schema1:OntologyProduct ; rdfs:label "EMI Ontology OWL" ; dcterms:description "Canonical EMI ontology release served from the persistent w3id URI" ; schema1:url . kgr:ena.api a schema1:ProgrammingInterface ; rdfs:label "ENA REST API" ; dcterms:description "REST API for programmatic access to ENA data, including sequence retrieval and metadata queries." ; schema1:url . kgr:ena.browser a schema1:GraphicalInterface ; rdfs:label "ENA Browser" ; dcterms:description "Web portal for searching, browsing, and viewing nucleotide sequence data and metadata." ; schema1:url . kgr:ena.datahubs a schema1:GraphicalInterface ; rdfs:label "ENA Data Hubs Portal" ; dcterms:description "Interface for setting up and managing pre-release and public Data Hubs for pathogen and other sequence data." ; schema1:url . kgr:ena.docs a schema1:DocumentationProduct ; rdfs:label "ENA Documentation" ; dcterms:description "Documentation and help resources for ENA, including submission guidelines and API documentation." ; schema1:url . kgr:ena.ftp a schema1:Product ; rdfs:label "ENA FTP Archive" ; dcterms:description "FTP archive with nucleotide sequences, assemblies, and associated data files." ; schema1:url . kgr:ena.training a schema1:DocumentationProduct ; rdfs:label "ENA Training" ; dcterms:description "Training resources for ENA users, including tutorials and webinars." ; schema1:url . kgr:encode.annotations a schema1:GraphicalInterface ; rdfs:label "ENCODE Encyclopedia Annotations" ; dcterms:description "Encyclopedia annotations view for released candidate cis-regulatory elements and other integrated ENCODE annotation products" ; schema1:url . kgr:encode.api a schema1:ProgrammingInterface ; rdfs:label "ENCODE REST API" ; dcterms:description "REST API for retrieving ENCODE metadata and released objects in JSON format and performing structured search queries" ; schema1:url . kgr:encode.experiment-matrix a schema1:GraphicalInterface ; rdfs:label "ENCODE Experiment Matrix" ; dcterms:description "Experiment matrix interface for browsing released ENCODE experiments across assays, biosamples, targets, and organisms" ; schema1:url . kgr:encode.portal a schema1:GraphicalInterface ; rdfs:label "ENCODE Portal" ; dcterms:description "Main ENCODE portal for searching, browsing, and filtering released functional genomics experiments, biosamples, files, and annotations" ; schema1:url . kgr:endb.browse a schema1:GraphicalInterface ; rdfs:label "ENdb Browse" ; dcterms:description "Web interface for browsing manually curated, experimentally validated enhancers and their target genes and regulatory annotations in ENdb." ; schema1:url . kgr:endb.download a schema1:Product ; rdfs:label "ENdb Download" ; dcterms:description "Bulk download of the ENdb dataset of experimentally supported enhancer-target gene records and associated regulatory metadata." ; schema1:url . kgr:enhanceratlas.browse a schema1:GraphicalInterface ; rdfs:label "EnhancerAtlas 2.0 Browser" ; dcterms:description "A web-based browser for exploring and visualizing enhancer annotations by species, tissue, and cell type within the EnhancerAtlas resource." ; schema1:url . kgr:enhanceratlas.download a schema1:Product ; rdfs:label "EnhancerAtlas 2.0 Download" ; dcterms:description "Downloadable enhancer annotation datasets covering 586 tissue and cell types across nine species, including predicted enhancer regions and enhancer-target gene interactions, available in BED and related tabular formats." ; schema1:url . kgr:enrichr-kg.downloads a schema1:GraphicalInterface ; rdfs:label "Enrichr-KG Downloads" ; dcterms:description "Download assets page exposing node and edge CSV snapshots for the current Enrichr-KG release" ; schema1:url . kgr:enrichr.api a schema1:ProgrammingInterface ; rdfs:label "Enrichr API" ; dcterms:description "REST API for submitting gene lists, retrieving enrichment results, exporting analyses, and querying Enrichr programmatically" ; schema1:url . kgr:enrichr.library-statistics a schema1:Product ; rdfs:label "Enrichr Library Statistics" ; dcterms:description "JSON endpoint listing Enrichr gene set libraries with category assignments, term counts, gene coverage, and source links" ; schema1:url . kgr:enrichr.portal a schema1:GraphicalInterface ; rdfs:label "Enrichr Web Portal" ; dcterms:description "Main Enrichr web interface for submitting gene sets, exploring enrichment results, browsing libraries, and viewing interactive visualizations" ; schema1:url . kgr:ensembl.api.perl a schema1:ProgrammingInterface ; rdfs:label "Ensembl Perl API" ; dcterms:description "Programmatic access to all Ensembl data using Perl scripts." ; schema1:url . kgr:ensembl.api.rest a schema1:ProgrammingInterface ; rdfs:label "Ensembl REST API" ; dcterms:description "RESTful API that allows access to Ensembl data using various programming languages." ; schema1:url . kgr:ensembl.biomart a schema1:GraphicalInterface ; rdfs:label "BioMart" ; dcterms:description "A data mining tool that allows extraction of data without programming knowledge or understanding of the underlying database structure." ; schema1:url . kgr:ensembl.blast a schema1:ProcessProduct ; rdfs:label "BLAST/BLAT" ; dcterms:description "Tool to search Ensembl genomes for DNA or protein sequences." ; schema1:url . kgr:ensembl.browser a schema1:GraphicalInterface ; rdfs:label "Ensembl Genome Browser" ; dcterms:description "A web-based platform for browsing and analyzing vertebrate genomes, including gene annotations, comparative genomics, and variation data." ; schema1:url . kgr:ensembl.vep a schema1:ProcessProduct ; rdfs:label "Variant Effect Predictor (VEP)" ; dcterms:description "A tool to analyze variants and predict the functional consequences of known and unknown variants." ; schema1:url . kgr:entrez.edirect a schema1:ProgrammingInterface ; rdfs:label "Entrez Direct (EDirect)" ; dcterms:description "Entrez Direct command-line tools for Unix systems" ; schema1:url . kgr:entrez.web a schema1:GraphicalInterface ; rdfs:label "Entrez Web Interface" ; dcterms:description "Web-based search interface for Entrez databases" ; schema1:url . kgr:envo.json a schema1:OntologyProduct ; rdfs:label "ENVO in obographs JSON format" ; dcterms:description "ENVO in obographs JSON format" ; schema1:url . kgr:envo.kg-bioportal a schema1:GraphProduct ; rdfs:label "ENVO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Environment Ontology (ENVO), produced by KG-Bioportal from the BioPortal submission. The archive contains ENVO_nodes.tsv and ENVO_edges.tsv." ; schema1:url . kgr:envo.obo a schema1:OntologyProduct ; rdfs:label "ENVO in OBO Format. May be lossy" ; dcterms:description "ENVO in OBO Format. May be lossy" ; schema1:url . kgr:envo.owl a schema1:OntologyProduct ; rdfs:label "main ENVO OWL release" ; dcterms:description "main ENVO OWL release" ; schema1:url . kgr:envo.subsets.EnvO-Lite-GSC.obo a schema1:OntologyProduct ; rdfs:label "GSC Lite subset of ENVO" ; dcterms:description "GSC Lite subset of ENVO" ; schema1:url . kgr:envo.subsets.envo-basic.obo a schema1:OntologyProduct ; rdfs:label "OBO-Basic edition of ENVO" ; dcterms:description "OBO-Basic edition of ENVO" ; schema1:url . kgr:envo.subsets.envoEmpo.owl a schema1:OntologyProduct ; rdfs:label "Earth Microbiome Project subset" ; dcterms:description "Earth Microbiome Project subset" ; schema1:url . kgr:envthes.api a schema1:ProgrammingInterface ; rdfs:label "EnvThes Skosmos REST API" ; dcterms:description "Skosmos REST API for EnvThes, with endpoints for vocabulary metadata, statistics, search and per-concept RDF (Turtle, RDF/XML or JSON-LD)." ; schema1:url . kgr:envthes.csv a schema1:Product ; rdfs:label "EnvThes CSV" ; dcterms:description "CSV export of the EnvThes source spreadsheet." ; schema1:url . kgr:envthes.skosmos a schema1:GraphicalInterface ; rdfs:label "EnvThes Skosmos Browser" ; dcterms:description "Skosmos browser for EnvThes with alphabetical and hierarchical navigation, search and concept pages for each term." ; schema1:url . kgr:envthes.xlsx a schema1:Product ; rdfs:label "EnvThes Spreadsheet" ; dcterms:description "EnvThes source spreadsheet, fetched from the authoritative Google Sheet and used as input for RDF generation." ; schema1:url . kgr:eo.obo a schema1:OntologyProduct ; rdfs:label "eo.obo" ; dcterms:description "Plant Environment Ontology in OBO format" ; schema1:url . kgr:eo.owl a schema1:OntologyProduct ; rdfs:label "eo.owl" ; dcterms:description "Plant Environment Ontology in OWL format" ; schema1:url . kgr:eol-traitbank.api a schema1:ProgrammingInterface ; rdfs:label "EOL API" ; dcterms:description "RESTful API endpoints for taxonomy, media, and text data access from Encyclopedia of Life" ; schema1:url . kgr:eol-traitbank.bulk-csv a schema1:Product ; rdfs:label "TraitBank Bulk Data Export" ; dcterms:description "Complete TraitBank bulk data export containing all 11 million+ trait records in CSV format with measurement details and source attribution" ; schema1:url . kgr:eol-traitbank.cypher a schema1:ProgrammingInterface ; rdfs:label "TraitBank Cypher Query Interface" ; dcterms:description "Neo4j Cypher query interface providing programmatic access to structured trait data, requiring authentication via EOL account" ; schema1:url . kgr:eol-traitbank.docs a schema1:DocumentationProduct ; rdfs:label "TraitBank Documentation" ; dcterms:description "Comprehensive documentation covering TraitBank data structure, API usage, authentication methods, and data formats" ; schema1:url . kgr:eol-traitbank.reconciliation a schema1:ProgrammingInterface ; rdfs:label "EOL Reconciliation API" ; dcterms:description "EOL Reconciliation Service API for resolving taxon names to EOL taxon IDs using OpenRefine-compatible reconciliation protocol" ; schema1:url . kgr:eol-traitbank.web a schema1:GraphicalInterface ; rdfs:label "TraitBank Web Portal" ; dcterms:description "Interactive web interface for searching, browsing, and discovering organism trait data across all taxa with filtering by taxonomic group and attribute type" ; schema1:url . kgr:epa-aqs.api a schema1:ProgrammingInterface ; rdfs:label "AQS Data API" ; dcterms:description "The AQS Data API, a public REST web service returning JSON for programmatic access to ambient air-quality sample data, monitor metadata, and quality-assurance records." ; schema1:url . kgr:epa-aqs.landing a schema1:GraphicalInterface ; rdfs:label "EPA Air Quality System (AQS) landing page" ; dcterms:description "The AQS landing page describing the Air Quality System repository and providing access to data, tools, and documentation." ; schema1:url . kgr:epa-echo.landing a schema1:GraphicalInterface ; rdfs:label "EPA ECHO landing page" ; dcterms:description "The ECHO landing page providing access to facility compliance and enforcement information, data downloads, and analytic tools." ; schema1:url . kgr:epa-echo.pfas-tools a schema1:GraphicalInterface ; rdfs:label "EPA PFAS Analytic Tools" ; dcterms:description "The ECHO PFAS Analytic Tools, which aggregate PFAS data from multiple EPA programs into downloadable, filterable datasets by state and program." ; schema1:url . kgr:epa-frs.data a schema1:ProgrammingInterface ; rdfs:label "EPA FRS data downloads" ; dcterms:description "EPA page describing FRS geospatial data downloads and services for facility location and identification records." ; schema1:url . kgr:epa-frs.landing a schema1:GraphicalInterface ; rdfs:label "EPA FRS landing page" ; dcterms:description "EPA landing page for the Facility Registry Service describing the centrally managed database of regulated facilities and how to access it." ; schema1:url . kgr:epa-ghg.fgas a schema1:GraphicalInterface ; rdfs:label "Fluorinated GHG Emissions and Supplies" ; dcterms:description "EPA page providing fluorinated greenhouse gas emissions and supplies data reported to the GHGRP." ; schema1:url . kgr:epa-ghg.landing a schema1:GraphicalInterface ; rdfs:label "EPA GHGRP landing page" ; dcterms:description "EPA landing page for the Greenhouse Gas Reporting Program, describing reported emissions data, tools, and downloads." ; schema1:url . kgr:epa-sdwis.landing a schema1:GraphicalInterface ; rdfs:label "EPA SDWIS federal reporting landing page" ; dcterms:description "EPA overview page describing SDWIS federal reporting, the national database of public water system information collected under the Safe Drinking Water Act." ; schema1:url . kgr:epa-sdwis.reports a schema1:GraphicalInterface ; rdfs:label "SDWIS Federal Reports Search" ; dcterms:description "The SDWIS Federal Reports Search interface for querying public water system, sampling, and violation data." ; schema1:url . kgr:epa-srs.about a schema1:DocumentationProduct ; rdfs:label "About EPA Substance Registry Services" ; dcterms:description "EPA overview page explaining Substance Registry Services as the central EPA system for substance information and program-list membership." ; schema1:url . kgr:epa-srs.search a schema1:GraphicalInterface ; rdfs:label "EPA SRS Search" ; dcterms:description "Public EPA Substance Registry Services search interface for looking up substances tracked or regulated by EPA programs and other sources." ; schema1:url . kgr:epa-srs.widget a schema1:ProgrammingInterface ; rdfs:label "EPA SRS Widget" ; dcterms:description "EPA SRS widget service for embedding a Substance Registry Services search box in external web pages." ; schema1:url . kgr:epa-ucmr.landing a schema1:GraphicalInterface ; rdfs:label "EPA UCMR landing page" ; dcterms:description "EPA landing page for the Unregulated Contaminant Monitoring Rule program, describing monitoring cycles, contaminant lists, and access to occurrence data." ; schema1:url . kgr:epd.downloads a schema1:Product ; rdfs:label "EPD Downloads" ; dcterms:description "FTP archive of EPDnew promoter collections and annotation files." ; schema1:url . kgr:epd.site a schema1:GraphicalInterface ; rdfs:label "EPD Website" ; dcterms:description "Web interface for browsing and searching experimentally validated eukaryotic promoters." ; schema1:url . kgr:epigraphdb.api a schema1:ProgrammingInterface ; rdfs:label "EpiGraphDB REST API" ; dcterms:description "Public REST API for programmatic access to EpiGraphDB graph entities, relationships, causal estimates, and metadata" ; schema1:url . kgr:epigraphdb.docs a schema1:DocumentationProduct ; rdfs:label "EpiGraphDB Documentation" ; dcterms:description "Documentation hub containing conceptual overviews, API endpoint references, data integration details, metrics, and research study links" ; schema1:url . kgr:epigraphdb.examples a schema1:DocumentationProduct ; rdfs:label "EpiGraphDB Example Notebooks" ; dcterms:description "Example notebooks demonstrating EpiGraphDB use cases, including causal inference, pleiotropy assessment, drug target identification, literature triangulation, and metadata queries" ; schema1:url . kgr:epigraphdb.rpackage a schema1:ProgrammingInterface ; rdfs:label "epigraphdb R Package" ; dcterms:description "R client package providing higher-level access to EpiGraphDB API endpoints and analysis workflows" ; schema1:url . kgr:epigraphdb.web a schema1:GraphicalInterface ; rdfs:label "EpiGraphDB Web UI" ; dcterms:description "Web application for interactive exploration of EpiGraphDB including search, causal estimates, pathways, literature evidence, ontology, and visualization gallery" ; schema1:url . kgr:epio.kg-bioportal a schema1:GraphProduct ; rdfs:label "EPIO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of EpilepsyOntology (EPIO), produced by KG-Bioportal from the BioPortal submission. The archive contains EPIO_nodes.tsv and EPIO_edges.tsv." ; schema1:url . kgr:epio.owl a schema1:OntologyProduct ; rdfs:label "epio.owl" ; dcterms:description "Epilepsy Ontology in OWL format" ; schema1:url . kgr:epo.owl a schema1:OntologyProduct ; rdfs:label "epo.owl" ; dcterms:description "Epidemiology Ontology in OWL format" ; schema1:url . kgr:epsd.browse a schema1:GraphicalInterface ; rdfs:label "EPSD Browse by Species" ; dcterms:description "Browse phosphorylation sites by species across 223 eukaryotes including 95 animals, 20 protists, 61 plants, and 48 fungi" ; schema1:url . kgr:epsd.portal a schema1:GraphicalInterface ; rdfs:label "EPSD 2.0 Portal" ; dcterms:description "Main web portal for EPSD 2.0 providing search, browse, and visualization of protein phosphorylation sites across 223 eukaryotic species with functional annotations" ; schema1:url . kgr:epsd.search a schema1:GraphicalInterface ; rdfs:label "EPSD Advanced Search" ; dcterms:description "Advanced search interface supporting substrate search, peptide search, batch search, BLAST search, and multi-condition queries" ; schema1:url . kgr:eqtlgen.allele_frequencies a schema1:Product ; rdfs:label "Allele Frequencies" ; dcterms:description "Allele frequencies for all tested SNPs based on 26,609 eQTLGen samples (excluding FHS), including combined allele counts and minor allele frequencies." ; schema1:url . kgr:eqtlgen.cis_eqtl_full a schema1:Product ; rdfs:label "Full cis-eQTL Summary Statistics" ; dcterms:description "Full cis-eQTL summary statistics from Phase I meta-analysis at the probe level, with cohort information removed and Bonferroni-adjusted p-values added." ; schema1:url . kgr:eqtlgen.cis_eqtl_significant a schema1:Product ; rdfs:label "Significant cis-eQTLs" ; dcterms:description "Significant cis-eQTL associations from Phase I meta-analysis (FDR < 0.05, tested in at least 2 cohorts), including Bonferroni-adjusted p-values." ; schema1:url . kgr:eqtlgen.cis_eqtl_smr a schema1:Product ; rdfs:label "SMR-formatted cis-eQTLs" ; dcterms:description "cis-eQTL results formatted for Summary-data-based Mendelian Randomization (SMR) analysis, enabling inference of putatively causal genes." ; schema1:url . kgr:eqtlgen.phase1_browser a schema1:GraphicalInterface ; rdfs:label "eQTLGen Phase I Browser" ; dcterms:description "Web interface for browsing significant cis-eQTL, trans-eQTL, and eQTS results from Phase I, with SMR-prioritised gene lists for various traits." ; schema1:url . kgr:eqtlgen.phase2_cookbook a schema1:DocumentationProduct ; rdfs:label "eQTLGen Phase II Cookbook" ; dcterms:description "Analysis cookbook and documentation for eQTLGen Phase II genome-wide eQTL meta-analysis in blood." ; schema1:url . kgr:eqtlgen.sc_website a schema1:GraphicalInterface ; rdfs:label "Single-cell eQTLGen Website" ; dcterms:description "Website for the single-cell eQTLGen project, providing resources and publications for single-cell eQTL analysis." ; schema1:url . kgr:eqtlgen.trans_eqtl_full a schema1:Product ; rdfs:label "Full trans-eQTL Summary Statistics" ; dcterms:description "Full trans-eQTL summary statistics from Phase I meta-analysis for ~10,000 known genetic risk variants, with cohort information removed and Bonferroni-adjusted p-values added." ; schema1:url . kgr:eqtlgen.trans_eqtl_significant a schema1:Product ; rdfs:label "Significant trans-eQTLs" ; dcterms:description "Significant trans-eQTL associations from Phase I meta-analysis for ~10,000 known genetic risk variants (FDR < 0.05), including Bonferroni-adjusted p-values." ; schema1:url . kgr:era-kg.api a schema1:ProgrammingInterface ; rdfs:label "ERA Knowledge Graph SPARQL API" ; dcterms:description "SPARQL API path documented with the Agency's data releases as the public query interface to the RINF knowledge graph." ; schema1:url . kgr:era-kg.documentation a schema1:DocumentationProduct ; rdfs:label "ERA Knowledge Graph Documentation and Query Catalogue" ; dcterms:description "The Agency's ERA Knowledge Graph page, with a catalogue of curated SPARQL queries organized by infrastructure type, covering parameter completeness, infrastructure statistics, and comparisons between member states." ; schema1:url . kgr:era-kg.dump a schema1:GraphProduct ; rdfs:label "ERA Knowledge Graph Dump" ; dcterms:description "Periodic full dump of the infrastructure knowledge graph, archived on Zenodo under a versioned series with a concept DOI covering all releases. The most recent release identified is v9.0 of 2026-06-29, a 3.75 GB TriG file (rinfplus.trig); earlier releases were compressed N-Quads. The edge count recorded here is the triple count reported by the live RINF+ repository on 2026-08-06." ; schema1:url . kgr:era-kg.graphdb a schema1:GraphicalInterface ; rdfs:label "ERA GraphDB Workbench" ; dcterms:description "GraphDB workbench for the Agency's linked data deployment, exposing the RINF+, ERA ontology, and legislation repositories for interactive exploration and query." ; schema1:url . kgr:era-kg.mappings a schema1:ProcessProduct ; rdfs:label "ERA Knowledge Graph RML Mappings" ; dcterms:description "RML mapping definitions used to generate the ERA Knowledge Graph from the source RINF data supplied by infrastructure managers and national registration entities." ; schema1:url . kgr:era-kg.ontology a schema1:OntologyProduct ; rdfs:label "ERA Vocabulary (ERA Ontology)" ; dcterms:description "The ERA Vocabulary (ERA Ontology), defined by the European Union Agency for Railways to describe European railway infrastructure and the vehicles authorized to operate over it. It carries roughly 76 classes, 600 properties, and 52 annotation properties, along with more than 80 SKOS concept schemes for coded parameter values, and is distributed with SHACL shapes for validating conforming data." ; schema1:url . kgr:era-kg.portal a schema1:GraphicalInterface ; rdfs:label "RINF Linked Data Portal" ; dcterms:description "RINF linked data portal, the Agency's entry point for the infrastructure knowledge graph, with documentation of the data model and access paths." ; schema1:url . kgr:era-kg.sparql a schema1:ProgrammingInterface ; rdfs:label "ERA Knowledge Graph SPARQL Endpoint (RINF+)" ; dcterms:description "Public SPARQL endpoint over the RINF+ repository, the infrastructure graph expressed with the ERA Ontology 3.1.x model, served from the Agency's GraphDB deployment. Verified queryable on 2026-08-06, when the repository reported 53,716,816 triples. Companion repositories on the same deployment hold the ERA ontology itself (OWL, SKOS, and SHACL) and references to railway legislation." ; schema1:url . kgr:ero.kg-bioportal a schema1:GraphProduct ; rdfs:label "ERO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Eagle-I Research Resource Ontology (ERO), produced by KG-Bioportal from the BioPortal submission. The archive contains ERO_nodes.tsv and ERO_edges.tsv." ; schema1:url . kgr:ero.owl a schema1:OntologyProduct ; rdfs:label "ero.owl" ; dcterms:description "eagle-i resource ontology in OWL format" ; schema1:url . kgr:esgf.search a schema1:ProgrammingInterface ; rdfs:label "ESGF Search" ; dcterms:description "The ESGF search interface (MetaGrid / AIMS) provides discovery and access to climate dataset metadata across the federation, including CMIP model output indexed by source_id, experiment_id, variable_id, and activity_id." ; schema1:url . kgr:eu-ctr.ctis a schema1:GraphicalInterface ; rdfs:label "CTIS Public Portal" ; dcterms:description "Public portal of the Clinical Trials Information System (CTIS), the EU registry for trials under Clinical Trials Regulation (EU) No 536/2014, with search over trial details, sponsors, therapeutic areas, recruitment status, documents and results, plus a clinical trial map searchable by medical condition." ; schema1:url . kgr:eu-ctr.ctis.docs a schema1:DocumentationProduct ; rdfs:label "CTIS Documentation" ; dcterms:description "European Medicines Agency documentation for CTIS, including the system overview, transition from the Clinical Trials Directive, transparency rules and links to training and support material." ; schema1:url . kgr:eu-ctr.download a schema1:Product ; rdfs:label "EU Clinical Trials Register Search Results Download" ; dcterms:description "Plain-text export of EU Clinical Trials Register search results, available as a summary or as full trial details (per member state), up to 20 trials per request." ; schema1:url . kgr:eu-ctr.faq a schema1:DocumentationProduct ; rdfs:label "EU Clinical Trials Register FAQ" ; dcterms:description "Frequently asked questions for the EU Clinical Trials Register, covering register scope, search and download functions, and interpretation of trial and results records." ; schema1:url . kgr:eu-ctr.results a schema1:GraphicalInterface ; rdfs:label "EU Clinical Trials Register Results" ; dcterms:description "Summary results of EU Clinical Trials Register trials, including trial information, subject disposition, baseline characteristics, end points and adverse events, browsable from search results filtered to trials with results." ; schema1:url . kgr:eu-ctr.search a schema1:GraphicalInterface ; rdfs:label "EU Clinical Trials Register Search" ; dcterms:description "Web search interface for the EU Clinical Trials Register, covering protocol and results information for interventional trials authorised under Directive 2001/20/EC, searchable by EudraCT number, condition, medicine, sponsor, country, phase, population age and other fields." ; schema1:url . kgr:eu-knowledge-graph.api a schema1:ProgrammingInterface ; rdfs:label "EU Knowledge Graph Wikibase API" ; dcterms:description "MediaWiki and Wikibase action API of the EU Knowledge Graph instance, supporting entity retrieval, search, and change tracking. Verified responding on 2026-08-06." ; schema1:url . kgr:eu-knowledge-graph.exports a schema1:GraphProduct ; rdfs:label "EU Knowledge Graph Data Exports" ; dcterms:description "Data exports of the EU Knowledge Graph, advertised on the instance's main page as available from data.linkedopendata.eu." ; schema1:url . kgr:eu-knowledge-graph.kohesio a schema1:GraphicalInterface ; rdfs:label "Kohesio" ; dcterms:description "Kohesio, the main public-facing application built on the EU Knowledge Graph. It presents EU cohesion policy projects and their beneficiaries to the public, with map and search based discovery. Kohesio won the European Ombudsman's 2023 award for good administration in the open administration category." ; schema1:url . kgr:eu-knowledge-graph.qa a schema1:GraphicalInterface ; rdfs:label "EU Knowledge Graph Question Answering Service" ; dcterms:description "Question answering service over the EU Knowledge Graph, allowing natural language questions to be posed against the graph." ; schema1:url . kgr:eu-knowledge-graph.query-service a schema1:GraphicalInterface ; rdfs:label "EU Knowledge Graph Query Service" ; dcterms:description "Query service interface for the EU Knowledge Graph, in the style of the Wikidata Query Service, providing an editor and result views over the SPARQL endpoint." ; schema1:url . kgr:eu-knowledge-graph.sparql a schema1:ProgrammingInterface ; rdfs:label "EU Knowledge Graph SPARQL Endpoint" ; dcterms:description "Public SPARQL endpoint of the EU Knowledge Graph query service. Verified queryable on 2026-08-06, when it reported 889,454,967 triples." ; schema1:url . kgr:eu-knowledge-graph.wikibase a schema1:GraphicalInterface ; rdfs:label "EU Knowledge Graph Wikibase" ; dcterms:description "The Wikibase instance itself, where items and statements can be browsed and, for authorized editors signed in through EU Login, edited. The instance reported 3,801,954 pages and more than 48 million edits on 2026-08-06, with edits from Commission services taking place the same day." ; schema1:url . kgr:eu-knowledge-graph.wikibase-config a schema1:ProcessProduct ; rdfs:label "EU Knowledge Graph Wikibase Configuration" ; dcterms:description "Wikibase configuration of the EU Knowledge Graph, published by the Commission's DORIS team, along with the issue tracker used for feature requests and bug reports." ; schema1:url . kgr:eupath.kg-bioportal a schema1:GraphProduct ; rdfs:label "EUPATH KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of VEuPathDB Ontology (EUPATH), produced by KG-Bioportal from the BioPortal submission. The archive contains EUPATH_nodes.tsv and EUPATH_edges.tsv." ; schema1:url . kgr:eupath.owl a schema1:OntologyProduct ; rdfs:label "eupath.owl" ; dcterms:description "VEuPathDB ontology in OWL format" ; schema1:url . kgr:eupathdb.api a schema1:ProgrammingInterface ; rdfs:label "VEuPathDB Web Services API" ; dcterms:description "Web services API for programmatic access to EuPathDB data and analyses." ; schema1:url . kgr:eupathdb.apollo a schema1:GraphicalInterface ; rdfs:label "Apollo Genome Annotation" ; dcterms:description "Real-time collaborative genome annotation and curation platform for structural and functional annotation." ; schema1:url . kgr:eupathdb.docs a schema1:DocumentationProduct ; rdfs:label "VEuPathDB Documentation and Tutorials" ; dcterms:description "Comprehensive documentation including tutorials, exercises, and user guides for VEuPathDB tools and features." ; schema1:url . kgr:eupathdb.downloads a schema1:Product ; rdfs:label "VEuPathDB Data Downloads" ; dcterms:description "FTP and download access to genome sequences, annotations, and analysis results for component databases." ; schema1:url . kgr:eupathdb.mapveu a schema1:GraphicalInterface ; rdfs:label "VectorBase PopBio Map (formerly MapVEu)" ; dcterms:description "Map-based visualization tool (PopBio Map) within VectorBase for field-collected data including insecticide resistance, population abundance, and pathogen infection status. Successor to the standalone MapVEu tool, now folded into VectorBase (part of VEuPathDB)." ; schema1:url . kgr:eupathdb.portal a schema1:GraphicalInterface ; rdfs:label "VEuPathDB Web Portal" ; dcterms:description "Web portal for searching, browsing, and analyzing eukaryotic pathogen genomic data including gene searches, genome browsers, and pathway analysis." ; schema1:url . kgr:eurio.datalab a schema1:GraphicalInterface ; rdfs:label "CORDIS Datalab" ; dcterms:description "CORDIS Datalab, the Publications Office's interface for exploring CORDIS data, including the SPARQL query interface over the EURIO Knowledge Graph and its catalogue of example queries." ; schema1:url . kgr:eurio.dataset-record a schema1:DocumentationProduct ; rdfs:label "EURIO Knowledge Graph Dataset Record" ; dcterms:description "Dataset record on the EU Open Data Portal for the EURIO Knowledge Graph dump and named graphs, giving the distributions, formats, publisher, and an annual update frequency." ; schema1:url . kgr:eurio.dump a schema1:GraphProduct ; rdfs:label "EURIO Knowledge Graph Dump" ; dcterms:description "Full dump of the EURIO Knowledge Graph, containing all CORDIS data about research projects funded under FP7, Horizon 2020, and Horizon Europe. Distributed as a zipped N-Quads file of approximately 1.19 GB; the same dump is also published in RDF/XML, Turtle, N-Triples, and JSON-LD. The edge count recorded here is the triple count reported by the live SPARQL endpoint on 2026-08-06." ; schema1:url . kgr:eurio.ontology a schema1:OntologyProduct ; rdfs:label "EURIO Ontology" ; dcterms:description "The EURIO (EUropean Research Information Ontology) ontology, which defines the structure of the EURIO Knowledge Graph and its named graphs. Developed by CORDIS on the basis of data about EU framework programme projects, following Semantic Web standards, and aligned with EU ontologies such as DINGO and FRAPO as well as schema.org and the W3C Organization Ontology. Published through EU Vocabularies at the Publications Office." ; schema1:url . kgr:eurio.organisations-graph a schema1:GraphProduct ; rdfs:label "EURIO Organisations Named Graph" ; dcterms:description "Organisations named graph, the subset of the EURIO Knowledge Graph covering the organizations participating in funded projects. Distributed as a zipped N-Quads file of approximately 100 MB, and also available in RDF/XML, Turtle, N-Triples, and JSON-LD." ; schema1:url . kgr:eurio.projects-graph a schema1:GraphProduct ; rdfs:label "EURIO Projects Named Graph" ; dcterms:description "Projects named graph, the subset of the EURIO Knowledge Graph covering all projects funded under the FP7, Horizon 2020, and Horizon Europe framework programmes. Distributed as a zipped N-Quads file of approximately 373 MB, and also available in RDF/XML, Turtle, N-Triples, and JSON-LD." ; schema1:url . kgr:eurio.results-graph a schema1:GraphProduct ; rdfs:label "EURIO Results Named Graph" ; dcterms:description "Results named graph, the subset of the EURIO Knowledge Graph covering project results, including deliverables and publications. Distributed as a zipped N-Quads file of approximately 577 MB, and also available in RDF/XML, Turtle, N-Triples, and JSON-LD." ; schema1:url . kgr:eurio.sparql a schema1:ProgrammingInterface ; rdfs:label "EURIO SPARQL Endpoint" ; dcterms:description "Public Virtuoso SPARQL endpoint over the EURIO Knowledge Graph. Verified queryable on 2026-08-06, when the graph reported 26,429,912 triples. The CORDIS Datalab provides a query interface over the same endpoint at https://cordis.europa.eu/datalab/sparql-endpoint/en." ; schema1:url . kgr:europepmc.annotations-api a schema1:ProgrammingInterface ; rdfs:label "Europe PMC Annotations API" ; dcterms:description "REST API serving text-mined entity annotations (genes and proteins, organisms, diseases, chemicals, GO terms, accession numbers and other types) for Europe PMC articles, produced by Europe PMC and community text-mining pipelines." ; schema1:url . kgr:europepmc.ftp a schema1:Product ; rdfs:label "Europe PMC FTP Downloads" ; dcterms:description "Europe PMC FTP root holding author manuscripts, preprints and preprint abstracts, PDFs, DOI mappings and lightweight metadata files alongside the open access and text-mined term downloads." ; schema1:url . kgr:europepmc.grants-api a schema1:ProgrammingInterface ; rdfs:label "Europe PMC Grants API" ; dcterms:description "REST API (GRIST) for searching research grants from Europe PMC funders and the publications linked to them." ; schema1:url . kgr:ev.obo a schema1:OntologyProduct ; rdfs:label "ev.obo" ; dcterms:description "eVOC in OBO format" ; schema1:url . kgr:ev.owl a schema1:OntologyProduct ; rdfs:label "ev.owl" ; dcterms:description "eVOC in OWL format" ; schema1:url . kgr:eva.api a schema1:ProgrammingInterface ; rdfs:label "EVA REST API" ; dcterms:description "EVA REST web services (v1) for studies, files, variants, segments, genes and species metadata, documented with Swagger UI." ; schema1:url . kgr:eva.code a schema1:ProcessProduct ; rdfs:label "EVA GitHub Organization" ; dcterms:description "EVA source code repositories on GitHub, including the web services, pipeline, accessioning service and OmicsDI exporter (web services under Apache-2.0)." ; schema1:url . kgr:eva.ftp a schema1:Product ; rdfs:label "EVA FTP Project Files" ; dcterms:description "EVA FTP site with one directory per EVA project (PRJEB accession) holding the submitted VCF files for projects loaded into the variant warehouse, plus ClinVar and COVID-19 release folders." ; schema1:url . kgr:eva.help a schema1:DocumentationProduct ; rdfs:label "EVA Help" ; dcterms:description "EVA help pages, including FAQs, accessioning details and data submission guidance." ; schema1:url . kgr:eva.identifiers-api a schema1:ProgrammingInterface ; rdfs:label "EVA Identifiers API" ; dcterms:description "EVA accessioning web services for looking up submitted (SS) and clustered (RS) variant accessions, documented with Swagger UI." ; schema1:url . kgr:eva.portal a schema1:GraphicalInterface ; rdfs:label "EVA Web Portal" ; dcterms:description "EVA web portal with the Study Browser, Variant Browser, RS release pages, submission instructions and help." ; schema1:url . kgr:eva.variant-browser a schema1:GraphicalInterface ; rdfs:label "EVA Variant Browser" ; dcterms:description "Variant Browser for querying EVA variants by study, gene, chromosomal location or variant identifier, per species and assembly." ; schema1:url . kgr:evlncrnas.circrnas a schema1:GraphicalInterface ; rdfs:label "CircRNA Browser" ; dcterms:description "Browse circular RNA (circRNA) entries with functional validation" ; schema1:url . kgr:evlncrnas.diseases a schema1:GraphicalInterface ; rdfs:label "Disease Browser" ; dcterms:description "Browse lncRNAs by associated diseases including cancers and other pathologies" ; schema1:url . kgr:evlncrnas.download a schema1:Product ; rdfs:label "Download Data" ; dcterms:description "Download page for bulk data access to EVLncRNAs database content" ; schema1:url . kgr:evlncrnas.exosomal a schema1:GraphicalInterface ; rdfs:label "Exosomal lncRNA Browser" ; dcterms:description "Browse exosomal lncRNAs from extracellular vesicles" ; schema1:url . kgr:evlncrnas.help a schema1:DocumentationProduct ; rdfs:label "Help Documentation" ; dcterms:description "Help documentation and usage instructions for EVLncRNAs database" ; schema1:url . kgr:evlncrnas.interactions a schema1:GraphicalInterface ; rdfs:label "Interaction Network Viewer" ; dcterms:description "Interactive network visualization of lncRNA interactions with proteins, RNAs, and DNAs" ; schema1:url . kgr:evlncrnas.peptide a schema1:GraphicalInterface ; rdfs:label "Peptide-Coding lncRNA Browser" ; dcterms:description "Browse peptide-coding lncRNAs validated by experiments" ; schema1:url . kgr:evlncrnas.portal a schema1:GraphicalInterface ; rdfs:label "EVLncRNAs Web Portal" ; dcterms:description "Web portal for browsing and searching experimentally validated functional lncRNAs" ; schema1:url . kgr:evlncrnas.resistant a schema1:GraphicalInterface ; rdfs:label "Resistant lncRNA Browser" ; dcterms:description "Browse resistant lncRNAs including drug resistance-associated entries" ; schema1:url . kgr:evlncrnas.species a schema1:GraphicalInterface ; rdfs:label "Species Browser" ; dcterms:description "Browse functional lncRNAs by species with sortable entries" ; schema1:url . kgr:evlncrnas.structures a schema1:GraphicalInterface ; rdfs:label "Structure Browser" ; dcterms:description "Browse lncRNA structural information from experimental studies" ; schema1:url . kgr:evoweb.sparql a schema1:ProgrammingInterface ; rdfs:label "EvoWeb SPARQL" ; dcterms:description "SPARQL endpoint for EvoWeb" ; schema1:url . kgr:evoweb.tpf a schema1:ProgrammingInterface ; rdfs:label "EvoWeb TPF" ; dcterms:description "Triple Pattern Fragments endpoint for EvoWeb" ; schema1:url . kgr:exmo.kg-bioportal a schema1:GraphProduct ; rdfs:label "EXMO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Exercise Medicine Ontology (EXMO), produced by KG-Bioportal from the BioPortal submission. The archive contains EXMO_nodes.tsv and EXMO_edges.tsv." ; schema1:url . kgr:exmo.owl a schema1:OntologyProduct ; rdfs:label "exmo.owl" ; dcterms:description "Exercise Medicine Ontology in OWL format" ; schema1:url . kgr:exo.kg-bioportal a schema1:GraphProduct ; rdfs:label "EXO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Exposure Ontology (EXO), produced by KG-Bioportal from the BioPortal submission. The archive contains EXO_nodes.tsv and EXO_edges.tsv." ; schema1:url . kgr:exo.obo a schema1:OntologyProduct ; rdfs:label "exo.obo" ; dcterms:description "Exposure ontology in OBO format" ; schema1:url . kgr:exo.owl a schema1:OntologyProduct ; rdfs:label "exo.owl" ; dcterms:description "Exposure ontology in OWL format" ; schema1:url . kgr:expressionatlas.api a schema1:ProgrammingInterface ; rdfs:label "Expression Atlas JSON Web API" ; dcterms:description "JSON web API for programmatic access to expression data, experiment metadata, and differential expression results" ; schema1:url . kgr:expressionatlas.documentation a schema1:DocumentationProduct ; rdfs:label "Expression Atlas Help Documentation" ; dcterms:description "Comprehensive help documentation covering data access, analysis methods, API usage, and interpretation guidelines" ; schema1:url . kgr:expressionatlas.portal a schema1:GraphicalInterface ; rdfs:label "Expression Atlas Portal" ; dcterms:description "Main web portal for searching and exploring gene expression data across species, tissues, and experimental conditions with interactive heatmaps and visualizations" ; schema1:url . kgr:expressionatlas.single-cell a schema1:GraphicalInterface ; rdfs:label "Single Cell Expression Atlas" ; dcterms:description "Single Cell Expression Atlas portal for exploring single-cell RNA-seq data with interactive t-SNE/UMAP plots, cell type annotations, and marker gene analysis" ; schema1:url . kgr:fabio.documentation a schema1:DocumentationProduct ; rdfs:label "FABIO Documentation" ; dcterms:description "FABIO ontology documentation, specification, and usage guidelines" ; schema1:url . kgr:fabio.ttl a schema1:OntologyProduct ; rdfs:label "FABIO Turtle File" ; dcterms:description "FABIO ontology in Turtle RDF format" ; schema1:url . kgr:fabric.genes a schema1:GraphicalInterface ; rdfs:label "FABRIC Gene Rankings" ; dcterms:description "Browsable table of genes with their cancer functional alteration bias scores and statistics." ; schema1:url . kgr:fabric.site a schema1:GraphicalInterface ; rdfs:label "FABRIC Cancer Portal" ; dcterms:description "Web portal for browsing genes ranked by protein functional alteration bias in cancer." ; schema1:url . kgr:faers.electronic_submissions a schema1:GraphicalInterface ; rdfs:label "FAERS Electronic Submissions Portal" ; dcterms:description "Portal for submitting adverse event reports electronically to the FDA" ; schema1:url . kgr:faers.faq a schema1:DocumentationProduct ; rdfs:label "FAERS FAQ" ; dcterms:description "Frequently asked questions about FAERS data structure, reporting requirements, and data usage" ; schema1:url . kgr:faers.public_dashboard a schema1:GraphicalInterface ; rdfs:label "FAERS Public Dashboard" ; dcterms:description "Interactive dashboard for exploring FAERS data with visualizations and search capabilities" ; schema1:url . kgr:fairdomhub.api a schema1:ProgrammingInterface ; rdfs:label "FAIRDOMHub JSON API" ; dcterms:description "SEEK JSON:API (version 0.3) for reading and writing FAIRDOMHub resources such as projects, investigations, studies, assays, data files, models, SOPs and people. Requests use the application/vnd.api+json media type." ; schema1:url . kgr:fairdomhub.docs a schema1:DocumentationProduct ; rdfs:label "SEEK Documentation" ; dcterms:description "SEEK documentation, including user guides and the API reference used by FAIRDOMHub." ; schema1:url . kgr:fairdomhub.portal a schema1:GraphicalInterface ; rdfs:label "FAIRDOMHub Web Portal" ; dcterms:description "Web portal for browsing, searching and downloading shared systems biology projects, investigations, studies, assays, data files, models and SOPs." ; schema1:url . kgr:fairdomhub.seek a schema1:ProcessProduct ; rdfs:label "SEEK Software" ; dcterms:description "Source code of SEEK, the Ruby on Rails web platform for managing and sharing FAIR research assets that FAIRDOMHub runs on." ; schema1:url . kgr:fairdomhub.sparql a schema1:GraphicalInterface ; rdfs:label "FAIRDOMHub SPARQL Query Interface" ; dcterms:description "Web query interface for running SPARQL queries over the RDF metadata that FAIRDOMHub exposes for its resources." ; schema1:url . kgr:fairsharing.api a schema1:ProgrammingInterface ; rdfs:label "FAIRsharing REST API" ; dcterms:description "REST/JSON API for reading and writing FAIRsharing records. Access requires a FAIRsharing account; clients sign in to obtain a JWT token that is sent with each request." ; schema1:url . kgr:fairsharing.api-docs a schema1:DocumentationProduct ; rdfs:label "FAIRsharing API Documentation" ; dcterms:description "Documentation for the FAIRsharing API, describing authentication and the available record endpoints." ; schema1:url . kgr:fairsharing.code a schema1:ProcessProduct ; rdfs:label "FAIRsharing Web Application Source Code" ; dcterms:description "Source code for the FAIRsharing web application front end (Vue.js), released under AGPL-3.0." ; schema1:url . kgr:fairsharing.docs a schema1:DocumentationProduct ; rdfs:label "FAIRsharing User Guide" ; dcterms:description "User guide for FAIRsharing covering record types, curation, searching, collections, and how to register and maintain records." ; schema1:url . kgr:fairsharing.mcp a schema1:ProgrammingInterface ; rdfs:label "FAIRsharing MCP Server" ; dcterms:description "Model Context Protocol (MCP) server providing access to FAIRsharing content for LLM-based tools, released under GPL-3.0." ; schema1:url . kgr:fairsharing.portal a schema1:GraphicalInterface ; rdfs:label "FAIRsharing Web Portal" ; dcterms:description "Searchable web portal for browsing and querying FAIRsharing records on standards, databases, policies and collections, with filters by record type, subject, domain, taxonomy and country, and links between related records." ; schema1:url . kgr:faldo.browser a schema1:DocumentationProduct ; rdfs:label "FALDO Ontology Browser" ; dcterms:description "Interactive ontology browser with class and property descriptions" ; schema1:url . kgr:faldo.kg-bioportal a schema1:GraphProduct ; rdfs:label "FALDO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Feature Annotation Location Description Ontology (FALDO), produced by KG-Bioportal from the BioPortal submission. The archive contains FALDO_nodes.tsv and FALDO_edges.tsv." ; schema1:url . kgr:faldo.rdf a schema1:OntologyProduct ; rdfs:label "FALDO Ontology (RDF/XML)" ; dcterms:description "FALDO ontology in RDF/XML format" ; schema1:url . kgr:faldo.ttl a schema1:OntologyProduct ; rdfs:label "FALDO Ontology (Turtle)" ; dcterms:description "FALDO ontology in Turtle/RDF format for describing feature locations on sequences" ; schema1:url . kgr:fantom5.atlas a schema1:Product ; rdfs:label "FANTOM5 Expression Atlas Data Files" ; dcterms:description "Downloadable data files for the FANTOM5 promoter-level expression atlas, including CAGE peaks (promoters), transcribed enhancers, and associated expression matrices for human and mouse genome assemblies." ; schema1:url . kgr:fantom5.docs a schema1:DocumentationProduct ; rdfs:label "FANTOM5 Project Website" ; dcterms:description "FANTOM5 project website with documentation, data access guidelines, tool descriptions, and citation information for the promoter-level mammalian expression atlas." ; schema1:url . kgr:fantom5.sstar a schema1:GraphicalInterface ; rdfs:label "FANTOM5 SSTAR Browser" ; dcterms:description "SSTAR (Semantic catalogue of Samples, Transcription initiation, And Regulations) is the FANTOM5 web interface for browsing samples, CAGE peaks, co-expression clusters, and transcription factor annotations." ; schema1:url . kgr:fantom5.zenbu a schema1:GraphicalInterface ; rdfs:label "FANTOM5 ZENBU Browser" ; dcterms:description "ZENBU is the interactive data integration and visualization system used to explore FANTOM5 promoter, enhancer, and time-course expression data in genomic context." ; schema1:url . kgr:fao.kg-bioportal a schema1:GraphProduct ; rdfs:label "FAO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Fungal Gross Anatomy Ontology (FAO), produced by KG-Bioportal from the BioPortal submission. The archive contains FAO_nodes.tsv and FAO_edges.tsv." ; schema1:url . kgr:fao.obo a schema1:OntologyProduct ; rdfs:label "fao.obo" ; dcterms:description "Fungal gross anatomy in OBO format" ; schema1:url . kgr:fao.owl a schema1:OntologyProduct ; rdfs:label "fao.owl" ; dcterms:description "Fungal gross anatomy in OWL format" ; schema1:url . kgr:fbbi.fbbi-base.obo a schema1:OntologyProduct ; rdfs:label "fbbi.fbbi-base.obo" ; dcterms:description "Biological Imaging Methods Ontology in OBO format" ; schema1:url . kgr:fbbi.fbbi-base.owl a schema1:OntologyProduct ; rdfs:label "fbbi.fbbi-base.owl" ; dcterms:description "Biological Imaging Methods Ontology in OWL format" ; schema1:url . kgr:fbbi.kg-bioportal a schema1:GraphProduct ; rdfs:label "FBBI KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Biological Imaging Methods Ontology (FBBI), produced by KG-Bioportal from the BioPortal submission. The archive contains FBBI_nodes.tsv and FBBI_edges.tsv." ; schema1:url . kgr:fbbi.obo a schema1:OntologyProduct ; rdfs:label "fbbi.obo" ; dcterms:description "Biological Imaging Methods Ontology in OBO format" ; schema1:url . kgr:fbbi.owl a schema1:OntologyProduct ; rdfs:label "fbbi.owl" ; dcterms:description "Biological Imaging Methods Ontology in OWL format" ; schema1:url . kgr:fbbt.fbbt-simple.obo a schema1:OntologyProduct ; rdfs:label "fbbt.fbbt-simple.obo" ; dcterms:description "Drosophila gross anatomy in OBO format" ; schema1:url . kgr:fbbt.fbbt-simple.owl a schema1:OntologyProduct ; rdfs:label "fbbt.fbbt-simple.owl" ; dcterms:description "Drosophila gross anatomy in OWL format" ; schema1:url . kgr:fbbt.json a schema1:OntologyProduct ; rdfs:label "fbbt.json" ; dcterms:description "Drosophila gross anatomy in JSON format" ; schema1:url . kgr:fbbt.obo a schema1:OntologyProduct ; rdfs:label "fbbt.obo" ; dcterms:description "Drosophila gross anatomy in OBO format" ; schema1:url . kgr:fbbt.owl a schema1:OntologyProduct ; rdfs:label "fbbt.owl" ; dcterms:description "Drosophila gross anatomy in OWL format" ; schema1:url . kgr:fbcv.json a schema1:OntologyProduct ; rdfs:label "fbcv.json" ; dcterms:description "FlyBase Controlled Vocabulary in JSON format" ; schema1:url . kgr:fbcv.kg-bioportal a schema1:GraphProduct ; rdfs:label "FB-CV KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of FlyBase Controlled Vocabulary (FB-CV), produced by KG-Bioportal from the BioPortal submission. The archive contains FB-CV_nodes.tsv and FB-CV_edges.tsv." ; schema1:url . kgr:fbcv.obo a schema1:OntologyProduct ; rdfs:label "fbcv.obo" ; dcterms:description "FlyBase Controlled Vocabulary in OBO format" ; schema1:url . kgr:fbcv.owl a schema1:OntologyProduct ; rdfs:label "fbcv.owl" ; dcterms:description "FlyBase Controlled Vocabulary in OWL format" ; schema1:url . kgr:fbdv.fbdv-simple.obo a schema1:OntologyProduct ; rdfs:label "fbdv.fbdv-simple.obo" ; dcterms:description "Drosophila development in OBO format" ; schema1:url . kgr:fbdv.fbdv-simple.owl a schema1:OntologyProduct ; rdfs:label "fbdv.fbdv-simple.owl" ; dcterms:description "Drosophila development in OWL format" ; schema1:url . kgr:fbdv.json a schema1:OntologyProduct ; rdfs:label "fbdv.json" ; dcterms:description "Drosophila development in JSON format" ; schema1:url . kgr:fbdv.obo a schema1:OntologyProduct ; rdfs:label "fbdv.obo" ; dcterms:description "Drosophila development in OBO format" ; schema1:url . kgr:fbdv.owl a schema1:OntologyProduct ; rdfs:label "fbdv.owl" ; dcterms:description "Drosophila development in OWL format" ; schema1:url . kgr:fbsp.kg-bioportal a schema1:GraphProduct ; rdfs:label "FB-SP KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Fly Taxonomy (FB-SP), produced by KG-Bioportal from the BioPortal submission. The archive contains FB-SP_nodes.tsv and FB-SP_edges.tsv." ; schema1:url . kgr:fbsp.owl a schema1:OntologyProduct ; rdfs:label "fbsp.owl" ; dcterms:description "Fly taxonomy in OWL format" ; schema1:url . kgr:fda-orange-book.data-files a schema1:Product ; rdfs:label "FDA Orange Book Data Files" ; dcterms:description "FDA Orange Book data files and appendices for approved drug products, therapeutic equivalence evaluations, patents, exclusivity, and related regulatory information." ; schema1:url . kgr:fda-orange-book.preface a schema1:DocumentationProduct ; rdfs:label "FDA Orange Book Preface" ; dcterms:description "FDA Orange Book preface describing publication structure, therapeutic equivalence codes, and interpretation of Orange Book listings." ; schema1:url . kgr:fda-orange-book.search a schema1:GraphicalInterface ; rdfs:label "FDA Orange Book Search" ; dcterms:description "FDA searchable Orange Book database for approved drug products, active ingredients, proprietary names, applicants, application numbers, dosage forms, routes, and patent numbers." ; schema1:url . kgr:fda-orphan-drugs.docs a schema1:DocumentationProduct ; rdfs:label "Designating an Orphan Product Documentation" ; dcterms:description "FDA guidance page on orphan designation for drugs and biological products, covering eligibility, how to request designation, incentives, and links to the designation database." ; schema1:url . kgr:fda-orphan-drugs.export a schema1:Product ; rdfs:label "Orphan Drug Designations Spreadsheet Export" ; dcterms:description "Spreadsheet export of search results (Search_results.xls), produced by choosing the \"Download Excel file\" output format on the search form. Searching the full default date range (01/01/1983 to today) with no other filters returns the complete listing, about 9 MB and 8,247 records on 2026-10-04, with one row per designation and columns for names, designation and approval status, dates, indications, exclusivity, and sponsor address. The file is an HTML table served with an Excel content type, and it is only returned for a form POST to OOPD_Results.cfm; there is no stable direct download URL." ; schema1:url . kgr:fda-orphan-drugs.search a schema1:GraphicalInterface ; rdfs:label "Orphan Drug Designations and Approvals Search" ; dcterms:description "Web search form for the orphan drug designation database, searchable by product name, sponsor, designated indication, and designation or exclusivity date range, with results shown as a condensed list, a detailed list, or a downloadable spreadsheet." ; schema1:url . kgr:fideo.kg-bioportal a schema1:GraphProduct ; rdfs:label "FIDEO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Food Interactions with Drugs Evidence Ontology (FIDEO), produced by KG-Bioportal from the BioPortal submission. The archive contains FIDEO_nodes.tsv and FIDEO_edges.tsv." ; schema1:url . kgr:fideo.owl a schema1:OntologyProduct ; rdfs:label "fideo.owl" ; dcterms:description "Food Interactions with Drugs Evidence Ontology in OWL format" ; schema1:url . kgr:finngen.endpoints a schema1:Product ; rdfs:label "FinnGen Clinical Endpoints" ; dcterms:description "Clinical endpoint definitions and control groups for FinnGen data releases, including detailed documentation for each data freeze." ; schema1:url . kgr:finngen.meta_analysis a schema1:Product ; rdfs:label "FinnGen Meta-Analysis Results" ; dcterms:description "Results from meta-analysis of FinnGen data with other major biobanks, allowing for more powerful detection of genetic associations." ; schema1:url . kgr:finngen.risteys a schema1:GraphicalInterface ; rdfs:label "Risteys" ; dcterms:description "A web service for browsing disease endpoints in FinnGen, including statistics, definitions, and relationships between diseases." ; schema1:url . kgr:finngen.summary_stats a schema1:Product ; rdfs:label "FinnGen GWAS Summary Statistics" ; dcterms:description "Summary statistics from genome-wide association studies of various disease phenotypes conducted on Finnish population data, with the most recent release being Data Freeze 13." ; schema1:url . kgr:fiokg.sparql a schema1:ProgrammingInterface ; rdfs:label "SAWGraph FRS KG SPARQL" ; dcterms:description "SPARQL endpoint for SAWGraph FRS KG" ; schema1:url . kgr:fiokg.tpf a schema1:ProgrammingInterface ; rdfs:label "SAWGraph FRS KG TPF" ; dcterms:description "Triple Pattern Fragments endpoint for SAWGraph FRS KG" ; schema1:url . kgr:fire.kg-bioportal a schema1:GraphProduct ; rdfs:label "FIRE KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Fire Ontology (FIRE), produced by KG-Bioportal from the BioPortal submission. The archive contains FIRE_nodes.tsv and FIRE_edges.tsv." ; schema1:url . kgr:fire.publication a schema1:Product ; rdfs:label "FIRE compendium of chromatin contact maps" ; dcterms:description "Schmitt et al. (2016) compendium of chromatin contact maps and Frequently Interacting REgions, distributed via the PubMed Central article record and its supplementary data." ; schema1:url . kgr:fix.kg-bioportal a schema1:GraphProduct ; rdfs:label "FIX KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Physico-Chemical Methods and Properties (FIX), produced by KG-Bioportal from the BioPortal submission. The archive contains FIX_nodes.tsv and FIX_edges.tsv." ; schema1:url . kgr:fix.obo a schema1:OntologyProduct ; rdfs:label "fix.obo" ; dcterms:description "Physico-chemical methods and properties in OBO format" ; schema1:url . kgr:fix.owl a schema1:OntologyProduct ; rdfs:label "fix.owl" ; dcterms:description "Physico-chemical methods and properties in OWL format" ; schema1:url . kgr:flopo.kg-bioportal a schema1:GraphProduct ; rdfs:label "FLOPO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Flora Phenotype Ontology (FLOPO), produced by KG-Bioportal from the BioPortal submission. The archive contains FLOPO_nodes.tsv and FLOPO_edges.tsv." ; schema1:url . kgr:flopo.owl a schema1:OntologyProduct ; rdfs:label "flopo.owl" ; dcterms:description "Flora Phenotype Ontology in OWL format" ; schema1:url . kgr:flu.kg-bioportal a schema1:GraphProduct ; rdfs:label "FLU KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Influenza Ontology (FLU), produced by KG-Bioportal from the BioPortal submission. The archive contains FLU_nodes.tsv and FLU_edges.tsv." ; schema1:url . kgr:flu.owl a schema1:OntologyProduct ; rdfs:label "flu.owl" ; dcterms:description "Influenza Ontology in OWL format" ; schema1:url . kgr:flybase.bulk.data a schema1:Product ; rdfs:label "FlyBase Bulk Data Files" ; dcterms:description "Bulk data files containing gene annotations, phenotypes, interactions, expression data, stocks, and orthology information in tab-separated format" ; schema1:url . kgr:flybase.gene.sequences.fasta a schema1:Product ; rdfs:label "FlyBase Gene Sequences" ; dcterms:description "Gene, transcript, and protein sequence data for Drosophila in FASTA format, including CDS, UTRs, and polypeptide sequences" ; schema1:url . kgr:flybase.genome.annotations.gff a schema1:Product ; rdfs:label "FlyBase Genome Annotations" ; dcterms:description "Genome annotation files for Drosophila melanogaster in GFF3 format, including gene models, transcripts, exons, and functional elements" ; schema1:url . kgr:flybase.genome.sequences.fasta a schema1:Product ; rdfs:label "FlyBase Genome Sequences" ; dcterms:description "Complete genome sequences for Drosophila species in FASTA format, including chromosome assemblies and scaffolds" ; schema1:url . kgr:flybase.jbrowse a schema1:GraphicalInterface ; rdfs:label "FlyBase JBrowse Genome Browser" ; dcterms:description "Interactive genome browser for visualizing Drosophila genomes, gene models, expression data, and genomic features using JBrowse technology" ; schema1:url . kgr:flybase.web.interface a schema1:GraphicalInterface ; rdfs:label "FlyBase Web Interface" ; dcterms:description "Web-based search and query interface for accessing FlyBase data, including gene information, phenotypes, stocks, and literature" ; schema1:url . kgr:fma.owl a schema1:OntologyProduct ; rdfs:label "fma.owl" ; dcterms:description "Foundational Model of Anatomy Ontology (subset) in OWL format" ; schema1:url . kgr:fobi.kg-bioportal a schema1:GraphProduct ; rdfs:label "FOBI KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of FOBI (Food-Biomarker Ontology) (FOBI), produced by KG-Bioportal from the BioPortal submission. The archive contains FOBI_nodes.tsv and FOBI_edges.tsv." ; schema1:url . kgr:fobi.owl a schema1:OntologyProduct ; rdfs:label "FOBI is an ontology to represent food intake data and associate it with metabolomic data" ; dcterms:description "FOBI is an ontology to represent food intake data and associate it with metabolomic data" ; schema1:url . kgr:foodb.data.experimental_cms a schema1:Product ; rdfs:label "FooDB Experimental C-MS Spectra" ; dcterms:description "Experimental C-MS Spectra data from FooDB" ; schema1:url . kgr:foodb.data.experimental_cms_peak_lists a schema1:Product ; rdfs:label "FooDB Experimental C-MS Peak Lists" ; dcterms:description "Experimental C-MS peak lists from FooDB." ; schema1:url . kgr:foodb.data.experimental_msms a schema1:Product ; rdfs:label "FooDB Experimental MS-MS Spectra" ; dcterms:description "Experimental MS-MS Spectra data from FooDB" ; schema1:url . kgr:foodb.data.experimental_msms_peak_lists a schema1:Product ; rdfs:label "FooDB Experimental MS-MS Peak Lists" ; dcterms:description "Experimental MS-MS peak lists from FooDB." ; schema1:url . kgr:foodb.data.fid a schema1:Product ; rdfs:label "FooDB Downloads" ; dcterms:description "FooDB downloads page listing the available bulk data archives, spectra, peak lists, and supplementary files (including NMR Free Induction Decay data). The previously listed direct FID archive (foodb_fid_files.zip) is no longer served by the host, so this product points to the canonical downloads page." ; schema1:url . kgr:foodb.data.images a schema1:Product ; rdfs:label "FooDB Image Files" ; dcterms:description "Image files of compounds, foods, and chemical structures" ; schema1:url . kgr:foodb.data.nmr a schema1:Product ; rdfs:label "FooDB NMR Spectra" ; dcterms:description "NMR Spectra data from FooDB" ; schema1:url . kgr:foodb.data.nmr_peak_lists a schema1:Product ; rdfs:label "FooDB NMR Peak Lists" ; dcterms:description "NMR peak lists from FooDB." ; schema1:url . kgr:foodb.data.predicted_cms a schema1:Product ; rdfs:label "FooDB Predicted C-MS Spectra" ; dcterms:description "Predicted C-MS Spectra data from FooDB" ; schema1:url . kgr:foodb.data.predicted_cms_peak_lists a schema1:Product ; rdfs:label "FooDB Predicted C-MS Peak Lists" ; dcterms:description "Predicted C-MS peak lists from FooDB." ; schema1:url . kgr:foodb.data.predicted_msms a schema1:Product ; rdfs:label "FooDB Predicted MS-MS Spectra" ; dcterms:description "Predicted MS-MS Spectra data from FooDB" ; schema1:url . kgr:foodb.data.predicted_msms_peak_lists a schema1:Product ; rdfs:label "FooDB Predicted MS-MS Peak Lists" ; dcterms:description "Predicted MS-MS peak lists from FooDB." ; schema1:url . kgr:fooddata-central.api a schema1:ProgrammingInterface ; rdfs:label "FoodData Central API" ; dcterms:description "FoodData Central REST API (v1) for food search, food details and food lists, returning JSON. Requires a free data.gov API key; DEMO_KEY works for light testing." ; schema1:url . kgr:fooddata-central.api-docs a schema1:DocumentationProduct ; rdfs:label "FoodData Central API Guide" ; dcterms:description "API guide for the FoodData Central REST API, with key signup, endpoints and the OpenAPI specification." ; schema1:url . kgr:fooddata-central.branded.csv a schema1:Product ; rdfs:label "FoodData Central Branded Foods (CSV)" ; dcterms:description "Branded Foods data as CSV, April 2026 release. Branded Foods hold label nutrient data for commercial products submitted by industry through the Global Branded Food Products Database partnership." ; schema1:url . kgr:fooddata-central.branded.json a schema1:Product ; rdfs:label "FoodData Central Branded Foods (JSON)" ; dcterms:description "Branded Foods data as JSON, April 2026 release." ; schema1:url . kgr:fooddata-central.downloads a schema1:DocumentationProduct ; rdfs:label "FoodData Central Download Datasets Page" ; dcterms:description "Download page listing current and past releases of every FoodData Central dataset, with documentation and field descriptions." ; schema1:url . kgr:fooddata-central.foundation.csv a schema1:Product ; rdfs:label "FoodData Central Foundation Foods (CSV)" ; dcterms:description "Foundation Foods data as CSV, April 2026 release. Foundation Foods carry analytical nutrient values with extensive metadata on samples and methods." ; schema1:url . kgr:fooddata-central.foundation.json a schema1:Product ; rdfs:label "FoodData Central Foundation Foods (JSON)" ; dcterms:description "Foundation Foods data as JSON, April 2026 release." ; schema1:url . kgr:fooddata-central.full.csv a schema1:Product ; rdfs:label "FoodData Central Full Download (CSV)" ; dcterms:description "Full FoodData Central download with all data types as CSV files, April 2026 release (about 480 MB compressed)." ; schema1:url . kgr:fooddata-central.portal a schema1:GraphicalInterface ; rdfs:label "FoodData Central Food Search" ; dcterms:description "FoodData Central food search interface for browsing nutrient profiles across all five data types." ; schema1:url . kgr:fooddata-central.sr-legacy.csv a schema1:Product ; rdfs:label "FoodData Central SR Legacy (CSV)" ; dcterms:description "SR Legacy data as CSV. This is the final April 2018 release of the USDA National Nutrient Database for Standard Reference, which is no longer updated." ; schema1:url . kgr:fooddata-central.sr-legacy.json a schema1:Product ; rdfs:label "FoodData Central SR Legacy (JSON)" ; dcterms:description "SR Legacy data as JSON, final April 2018 release." ; schema1:url . kgr:fooddata-central.survey.csv a schema1:Product ; rdfs:label "FoodData Central Survey Foods FNDDS (CSV)" ; dcterms:description "Survey Foods (FNDDS) data as CSV, October 2024 release. FNDDS gives nutrient values for foods and beverages reported in What We Eat in America, the dietary intake component of NHANES." ; schema1:url . kgr:fooddata-central.survey.json a schema1:Product ; rdfs:label "FoodData Central Survey Foods FNDDS (JSON)" ; dcterms:description "Survey Foods (FNDDS) data as JSON, October 2024 release." ; schema1:url . kgr:foodkg.dgo a schema1:OntologyProduct ; rdfs:label "Dietary Guideline Ontology" ; dcterms:description "Dietary Guideline Ontology (heals-guidelines), an OWL ontology modeling dietary guidelines, published alongside FoodKG." ; schema1:url . kgr:foodkg.site a schema1:DocumentationProduct ; rdfs:label "FoodKG Website" ; dcterms:description "FoodKG project website, describing the knowledge graph, its construction process, the public SPARQL endpoint and related applications (WhatToMake, question answering over FoodKG and ingredient substitution)." ; schema1:url . kgr:foodkg.whattomake a schema1:OntologyProduct ; rdfs:label "WhatToMake Ontology" ; dcterms:description "Food component of the WhatToMake ontology, containing the base classes (food, ingredient, recipe, characteristic, user, course, meal) used to find recipes from ingredients at hand while accounting for allergies and dietary restrictions." ; schema1:url . kgr:foodkg.whattomake-individuals a schema1:GraphProduct ; rdfs:label "WhatToMake Individuals" ; dcterms:description "Ingredient component of the WhatToMake ontology, containing the individuals that represent recipes and ingredients." ; schema1:url . kgr:foodon.owl a schema1:OntologyProduct ; rdfs:label "FoodOn ontology with import file references and over 9,000 food products" ; dcterms:description "FoodOn ontology with import file references and over 9,000 food products" ; schema1:url . kgr:fovt.fovt-base.obo a schema1:OntologyProduct ; rdfs:label "fovt.fovt-base.obo" ; dcterms:description "FuTRES Ontology of Vertebrate Traits in OBO format" ; schema1:url . kgr:fovt.fovt-base.owl a schema1:OntologyProduct ; rdfs:label "fovt.fovt-base.owl" ; dcterms:description "FuTRES Ontology of Vertebrate Traits in OWL format" ; schema1:url . kgr:fovt.obo a schema1:OntologyProduct ; rdfs:label "fovt.obo" ; dcterms:description "FuTRES Ontology of Vertebrate Traits in OBO format" ; schema1:url . kgr:fovt.owl a schema1:OntologyProduct ; rdfs:label "fovt.owl" ; dcterms:description "FuTRES Ontology of Vertebrate Traits in OWL format" ; schema1:url . kgr:freebase.deleted-triples a schema1:Product ; rdfs:label "Freebase Deleted Triples" ; dcterms:description "One-time dump of about 63 million triples deleted from Freebase through March 2013, in a CSV-like format split across 20 files (about 2 GB compressed)." ; schema1:url . kgr:freebase.docs a schema1:DocumentationProduct ; rdfs:label "Freebase Data Dumps Documentation" ; dcterms:description "Google Developers page describing the Freebase data dumps, their formats and license terms, and how to cite them." ; schema1:url . kgr:freebase.rdf a schema1:GraphProduct ; rdfs:label "Freebase Triples" ; dcterms:description "Final Freebase RDF dump with every fact in Freebase at shutdown, about 1.9 billion triples serialized as N-Triples (about 22 GB compressed, 250 GB uncompressed)." ; schema1:url . kgr:fypo.obo a schema1:OntologyProduct ; rdfs:label "fypo.obo" ; dcterms:description "Fission Yeast Phenotype Ontology in OBO format" ; schema1:url . kgr:fypo.owl a schema1:OntologyProduct ; rdfs:label "fypo.owl" ; dcterms:description "Fission Yeast Phenotype Ontology in OWL format" ; schema1:url . kgr:gad.publication a schema1:DocumentationProduct ; rdfs:label "Genetic Association Database Publication" ; dcterms:description "Original publication describing the Genetic Association Database, its scope, and methodology. The original web portal is no longer available, so this paper serves as the primary documentation for the archived resource." ; schema1:url . kgr:gadm.download_country a schema1:Product ; rdfs:label "GADM Data Download (by country)" ; dcterms:description "Download page for GADM administrative boundary spatial data by country, the recommended approach for obtaining GADM polygons." ; schema1:url . kgr:gadm.download_world a schema1:Product ; rdfs:label "GADM Data Download (world)" ; dcterms:description "Download page for GADM administrative boundary spatial data covering the entire world." ; schema1:url . kgr:gadm.metadata a schema1:DocumentationProduct ; rdfs:label "GADM Metadata" ; dcterms:description "Metadata documentation describing the GADM data, its structure, and administrative levels." ; schema1:url . kgr:gallont.kg-bioportal a schema1:GraphProduct ; rdfs:label "GALLONT KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Plant Gall Ontology (GALLONT), produced by KG-Bioportal from the BioPortal submission. The archive contains GALLONT_nodes.tsv and GALLONT_edges.tsv." ; schema1:url . kgr:gallont.obo a schema1:OntologyProduct ; rdfs:label "gallont.obo" ; dcterms:description "Plant Gall Ontology in OBO format" ; schema1:url . kgr:gallont.owl a schema1:OntologyProduct ; rdfs:label "gallont.owl" ; dcterms:description "Plant Gall Ontology in OWL format" ; schema1:url . kgr:gard.portal a schema1:DocumentationProduct ; rdfs:label "GARD Web Portal" ; dcterms:description "Public GARD website for disease summaries, support resources, and contact-center access." ; schema1:url . kgr:gaz.gaz-countries.owl a schema1:OntologyProduct ; rdfs:label "GAZ countries" ; dcterms:description "A country specific subset of the GAZ." ; schema1:url . kgr:gaz.obo a schema1:OntologyProduct ; rdfs:label "gaz.obo" ; dcterms:description "Gazetteer in OBO format" ; schema1:url . kgr:gaz.owl a schema1:OntologyProduct ; rdfs:label "gaz.owl" ; dcterms:description "Gazetteer in OWL format" ; schema1:url . kgr:gbif a schema1:DataSource, "Organization" ; rdfs:label "Global Biodiversity Information Facility (GBIF)" ; dcterms:created "2025-12-17T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Global Biodiversity Information Facility (GBIF) is an international network and data infrastructure providing open access to over 3.1 billion species occurrence records from 81,000+ datasets contributed by 2,500+ publishing institutions worldwide. GBIF aggregates species distribution and biodiversity data using Darwin Core standards." ; dcterms:identifier "gbif" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:catalogue-of-life.annual-releases, kgr:catalogue-of-life.downloads, kgr:gbif.api, kgr:gbif.csv-download, kgr:gbif.documentation, kgr:gbif.dwc-archive, kgr:gbif.ipt, kgr:gbif.maps-api, kgr:gbif.portal, kgr:mangal.api, kgr:mangal.docs, kgr:mangal.portal, kgr:mangal.rmangal, kgr:openbiodiv.api, kgr:openbiodiv.portal, kgr:openbiodiv.sparql, kgr:wildlifekn.graph ; schema1:identifier "gbif" ; schema1:name "Global Biodiversity Information Facility (GBIF)" ; doap:repository ; skos:inScheme "biodiversity", "environment", "organisms" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:gbif-secretariat . kgr:gbif-secretariat a "Organization" ; rdfs:label "GBIF Secretariat" . kgr:gbif.api a schema1:ProgrammingInterface ; rdfs:label "GBIF REST API" ; dcterms:description "RESTful API providing programmatic access to registry, species, occurrence, and map data with JSON responses and support for complex queries" ; schema1:url . kgr:gbif.csv-download a schema1:Product ; rdfs:label "GBIF Simple CSV Downloads" ; dcterms:description "Simple CSV format occurrence downloads with interpreted data and commonly used columns, suitable for spreadsheet and programming analysis" ; schema1:url . kgr:gbif.documentation a schema1:DocumentationProduct ; rdfs:label "GBIF Technical Documentation" ; dcterms:description "Comprehensive technical documentation, API reference, developer guides, and data formats documentation" ; schema1:url . kgr:gbif.dwc-archive a schema1:Product ; rdfs:label "GBIF Darwin Core Archive Downloads" ; dcterms:description "Darwin Core Archive format occurrence downloads from 81,000+ datasets with interpreted and verbatim data, metadata, and multimedia information" ; schema1:url . kgr:gbif.ipt a schema1:Product ; rdfs:label "GBIF Integrated Publishing Toolkit (IPT)" ; dcterms:description "Integrated Publishing Toolkit (IPT) - free, open-source Java software for publishing Darwin Core formatted biodiversity datasets with web interface and automated data management capabilities" ; schema1:url . kgr:gbif.maps-api a schema1:ProgrammingInterface ; rdfs:label "GBIF Maps API" ; dcterms:description "Raster tile maps API providing global occurrence distribution maps in PNG and Mapbox Vector Tile (MVT) formats" ; schema1:url . kgr:gbif.portal a schema1:GraphicalInterface ; rdfs:label "GBIF.org Portal" ; dcterms:description "Web portal for searching, filtering, and discovering occurrence records, species information, datasets, and organizations with interactive mapping and download capabilities" ; schema1:url . kgr:gcmd.keywords a schema1:Product ; rdfs:label "GCMD Keyword Viewer" ; dcterms:description "The GCMD Keyword Viewer provides browsable access to NASA's hierarchical Earth science controlled vocabulary, including science keywords, instruments, platforms, providers, and locations." ; schema1:url . kgr:gdc.api a schema1:ProgrammingInterface ; rdfs:label "GDC API" ; dcterms:description "REST API documentation and endpoint for programmatic access to GDC metadata and files." ; schema1:url . kgr:gdc.data-transfer-tool a schema1:DocumentationProduct ; rdfs:label "GDC Data Transfer Tool" ; dcterms:description "Documentation and download links for the GDC Data Transfer Tool used for bulk file download." ; schema1:url . kgr:gdc.portal a schema1:GraphicalInterface ; rdfs:label "GDC Data Portal" ; dcterms:description "Main GDC web portal for interactive exploration of projects, cohorts, and files." ; schema1:url . kgr:gdsc.site a schema1:GraphicalInterface ; rdfs:label "GDSC Web Interface" ; dcterms:description "Web interface for searching and browsing GDSC data including cell lines, compounds, and genomic features" ; schema1:url . kgr:gecko.kg-bioportal a schema1:GraphProduct ; rdfs:label "GECKO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Genomics Cohorts Knowledge Ontology (GECKO), produced by KG-Bioportal from the BioPortal submission. The archive contains GECKO_nodes.tsv and GECKO_edges.tsv." ; schema1:url . kgr:gecko.owl a schema1:OntologyProduct ; rdfs:label "gecko.owl" ; dcterms:description "Genomics Cohorts Knowledge Ontology in OWL format" ; schema1:url . kgr:gelinea.tool a schema1:Product ; rdfs:label "GeLiNEA Tool" ; dcterms:description "Command-line tool for performing gene-list network enrichment analysis using degree-preserving random gene list null models" ; schema1:url . kgr:genage.human a schema1:Product ; rdfs:label "GenAge Human Genes Dataset" ; dcterms:description "Tab-delimited file containing all human ageing-related genes with extensive annotations" ; schema1:url . kgr:genage.human.search a schema1:GraphicalInterface ; rdfs:label "GenAge Human Genes Search" ; dcterms:description "Web interface for searching and browsing human ageing-related genes" ; schema1:url . kgr:genage.models a schema1:Product ; rdfs:label "GenAge Model Organisms Dataset" ; dcterms:description "Tab-delimited file containing genes associated with longevity and ageing in model organisms (yeast, worms, flies, mice)" ; schema1:url . kgr:genage.models.search a schema1:GraphicalInterface ; rdfs:label "GenAge Model Organisms Search" ; dcterms:description "Web interface for searching and browsing model organism ageing genes" ; schema1:url . kgr:gencc.database a schema1:Product ; rdfs:label "GenCC Database" ; dcterms:description "The GenCC database containing over 15,000 curated gene-disease validity assertions on 4,500+ unique genes from 12 international submitters, with standardized classifications and evidence links" ; schema1:url . kgr:gencc.downloads a schema1:Product ; rdfs:label "GenCC Data Downloads" ; dcterms:description "Freely available downloadable datasets in multiple formats (XLSX, XLS, TSV, CSV) containing all GenCC gene-disease assertions with comprehensive metadata under CC0 1.0 Public Domain Dedication" ; schema1:url . kgr:gencc.search_interface a schema1:GraphicalInterface ; rdfs:label "GenCC Search Interface" ; dcterms:description "Interactive web-based search and browse interface at search.thegencc.org allowing users to filter gene-disease assertions by gene symbol, disease, submitter, and validity classification" ; schema1:url . kgr:gencode.primary a schema1:Product ; rdfs:label "GENCODE Primary Transcripts" ; dcterms:description "GENCODE Primary transcript set capturing minimal transcripts at protein coding genes" ; schema1:url . kgr:gendr.web a schema1:GraphicalInterface ; rdfs:label "GenDR Web Interface" ; dcterms:description "Web-based search and browsing interface for GenDR" ; schema1:url . kgr:gene-expression-atlas-okn.sparql a schema1:ProgrammingInterface ; rdfs:label "Gene Expression Atlas SPARQL" ; dcterms:description "SPARQL endpoint for Gene Expression Atlas" ; schema1:url . kgr:gene-expression-atlas-okn.tpf a schema1:ProgrammingInterface ; rdfs:label "Gene Expression Atlas TPF" ; dcterms:description "Triple Pattern Fragments endpoint for Gene Expression Atlas" ; schema1:url . kgr:gene-expression-omnibus.portal a schema1:GraphicalInterface ; rdfs:label "GEO Portal" ; dcterms:description "Web portal for searching, browsing, and downloading functional genomics datasets archived in the Gene Expression Omnibus." ; schema1:url . kgr:gene-ontology-consortium a "Organization" ; rdfs:label "Gene Ontology Consortium" . kgr:gene2phenotype.api a schema1:ProgrammingInterface ; rdfs:label "Gene2Phenotype API" ; dcterms:description "API documentation interface for programmatic access to G2P records." ; schema1:url . kgr:gene2phenotype.api.schema a schema1:ProgrammingInterface ; rdfs:label "Gene2Phenotype API Schema" ; dcterms:description "OpenAPI schema endpoint for the Gene2Phenotype API." ; schema1:url . kgr:gene2phenotype.portal a schema1:GraphicalInterface ; rdfs:label "Gene2Phenotype Portal" ; dcterms:description "Main interface for searching curated gene-disease evidence and panels." ; schema1:url . kgr:genebass.portal a schema1:GraphicalInterface ; rdfs:label "Genebass Portal" ; dcterms:description "Interactive web interface for searching and browsing Genebass gene-based and variant-level association results." ; schema1:url . kgr:genemania.web a schema1:GraphicalInterface ; rdfs:label "GeneMANIA Web Interface" ; dcterms:description "Web interface for searching, visualizing, and analyzing functional association networks" ; schema1:url . kgr:geneorganizer.site a schema1:GraphicalInterface ; rdfs:label "Gene ORGANizer Website" ; dcterms:description "Web tool for exploring associations between genes and the organs and body parts they affect." ; schema1:url . kgr:genepio.kg-bioportal a schema1:GraphProduct ; rdfs:label "GENEPIO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Genomic Epidemiology Application Ontology (GENEPIO), produced by KG-Bioportal from the BioPortal submission. The archive contains GENEPIO_nodes.tsv and GENEPIO_edges.tsv." ; schema1:url . kgr:genepio.owl a schema1:OntologyProduct ; rdfs:label "genepio.owl" ; dcterms:description "Genomic Epidemiology Ontology in OWL format" ; schema1:url . kgr:geneprof.translator-wiki a schema1:GraphicalInterface ; rdfs:label "GeneProf Translator Wiki Page" ; dcterms:description "Translator wiki page documenting the GeneProf resource and historical access details." ; schema1:url . kgr:genereviews.portal a schema1:GraphicalInterface ; rdfs:label "GeneReviews on NCBI Bookshelf" ; dcterms:description "GeneReviews collection on the NCBI Bookshelf, with searchable expert-authored chapters on inherited conditions." ; schema1:url . kgr:genereviews.readme a schema1:DocumentationProduct ; rdfs:label "GeneReviews Data README" ; dcterms:description "README for the GeneReviews data reports on the NCBI FTP site." ; schema1:url . kgr:genetics-kp.code a schema1:ProcessProduct ; rdfs:label "Genetics KP Source Code" ; dcterms:description "Source code repository for the Genetics Knowledge Provider implementation." ; schema1:url . kgr:genetics-kp.docs a schema1:DocumentationProduct ; rdfs:label "Genetics KP Documentation" ; dcterms:description "Team overview and data source documentation for the Genetics Knowledge Provider." ; schema1:url . kgr:geno.kg-bioportal a schema1:GraphProduct ; rdfs:label "GENO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Genotype Ontology (GENO), produced by KG-Bioportal from the BioPortal submission. The archive contains GENO_nodes.tsv and GENO_edges.tsv." ; schema1:url . kgr:geno.owl a schema1:OntologyProduct ; rdfs:label "GENO" ; dcterms:description "GENO" ; schema1:url . kgr:genomernai.downloads a schema1:Product ; rdfs:label "GenomeRNAi Downloads" ; dcterms:description "Bulk downloads of RNAi phenotype and reagent datasets." ; schema1:url . kgr:genomernai.site a schema1:GraphicalInterface ; rdfs:label "GenomeRNAi Website" ; dcterms:description "Web interface for browsing and searching RNAi phenotypes and reagents." ; schema1:url . kgr:genomickb.site a schema1:GraphicalInterface ; rdfs:label "GenomicKB Site" ; dcterms:description "Graphical interface for GenomicKB" ; schema1:url . kgr:genophenoenvo-kg.code a schema1:ProcessProduct ; rdfs:label "GenoPhenoEnvo KG Construction Pipeline" ; dcterms:description "Python-based pipeline for downloading, transforming, and merging plant genomics and phenomics data into a standardized knowledge graph using KG-Hub tools, custom transformation scripts, and Biolink model annotations. Includes Cypher query utilities for graph exploration." ; schema1:url . kgr:genophenoenvo-kg.neo4j a schema1:GraphicalInterface ; rdfs:label "GenoPhenoEnvo KG Neo4j Visualization" ; dcterms:description "Interactive graph database visualization and query interface using Neo4j for exploring plant gene expression patterns, homologous genes, and environmental responses across multiple plant species including Arabidopsis thaliana, Populus trichocarpa, Zea mays, Sorghum bicolor, and Oryza sativa." ; schema1:url . kgr:geo.docs a schema1:DocumentationProduct ; rdfs:label "GEO Documentation" ; dcterms:description "GEO project wiki describing the ontology rationale, modular architecture, and release locations." ; schema1:url . kgr:geo.kg-bioportal a schema1:GraphProduct ; rdfs:label "GEO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Geographical Entity Ontology (GEO), produced by KG-Bioportal from the BioPortal submission. The archive contains GEO_nodes.tsv and GEO_edges.tsv." ; schema1:url . kgr:geo.owl a schema1:OntologyProduct ; rdfs:label "geo.owl" ; dcterms:description "Geographical Entity Ontology in OWL format" ; schema1:url . kgr:geoconnex.sparql a schema1:ProgrammingInterface ; rdfs:label "GEOCONNEX SPARQL" ; dcterms:description "SPARQL endpoint for GEOCONNEX" ; schema1:url . kgr:geoconnex.tpf a schema1:ProgrammingInterface ; rdfs:label "GEOCONNEX TPF" ; dcterms:description "Triple Pattern Fragments endpoint for GEOCONNEX" ; schema1:url . kgr:geonames.api a schema1:ProgrammingInterface ; rdfs:label "GeoNames Web Services" ; dcterms:description "GeoNames web service overview covering search, country, postal code, hierarchy, and nearby-place APIs." ; schema1:url . kgr:geonames.export a schema1:DocumentationProduct ; rdfs:label "GeoNames Download and Webservice Overview" ; dcterms:description "GeoNames download and webservice overview for daily data extracts, postal code datasets, and usage conditions." ; schema1:url . kgr:geonames.feature-codes a schema1:DocumentationProduct ; rdfs:label "GeoNames Feature Codes" ; dcterms:description "GeoNames feature class and feature code vocabulary for classifying geographic entities." ; schema1:url . kgr:ghr.conditions a schema1:GraphicalInterface ; rdfs:label "MedlinePlus Genetics Conditions" ; dcterms:description "Browse page for genetic conditions from the MedlinePlus Genetics migration." ; schema1:url . kgr:ghr.gene-catalog a schema1:GraphicalInterface ; rdfs:label "MedlinePlus Genetics Gene Catalog" ; dcterms:description "Browse page for gene summaries from the MedlinePlus Genetics migration." ; schema1:url . kgr:ghr.portal a schema1:GraphicalInterface ; rdfs:label "MedlinePlus Genetics Portal" ; dcterms:description "MedlinePlus Genetics portal containing migrated Genetics Home Reference content." ; schema1:url . kgr:ginsim-models.docs a schema1:DocumentationProduct ; rdfs:label "GINsim Documentation" ; dcterms:description "GINsim user documentation covering the graphical interface, logical regulatory graphs, perturbations, model reduction, simulation and dynamical analyses, and supported import and export formats." ; schema1:url . kgr:ginsim-models.github a schema1:Product ; rdfs:label "GINsim Model Repository Sources on GitHub" ; dcterms:description "Directory of the GINsim website GitHub repository (mkdocs branch) holding the source of every model page, with the zginml and SBML-qual model files, Jupyter notebooks, figures and supplementary files. New models can be contributed by pull request." ; schema1:url . kgr:ginsim-models.legacy-repository a schema1:GraphicalInterface ; rdfs:label "GINsim Model Repository (ginsim.org)" ; dcterms:description "Former location of the GINsim model repository on the ginsim.org website, hosted at IGC and INESC-ID before the move to GitHub Pages." ; schema1:url . kgr:ginsim-models.repository a schema1:GraphicalInterface ; rdfs:label "GINsim Model Repository Website" ; dcterms:description "Web table of the 70 logical models in the repository, filterable by model name, taxon, biological process, year and authors, linking to one page per model with a description, reference publications and model file downloads." ; schema1:url . kgr:ginsim-models.sbml-qual a schema1:Product ; rdfs:label "GINsim Model Files (SBML-qual)" ; dcterms:description "Logical models exported in SBML Level 3 qualitative models (SBML-qual) format, downloadable from the model pages. Only nine SBML-qual files, for seven models, were present when checked on 2026-10-05; the other models are distributed in zginml only, which GINsim can export to SBML-qual." ; schema1:url . kgr:ginsim-models.software a schema1:ProcessProduct ; rdfs:label "GINsim Software" ; dcterms:description "GINsim (Gene Interaction Network simulation), a Java desktop application for building, simulating and analysing logical models of regulatory networks, including state transition graphs, stable state and trap space search, model reduction and export to formats such as SBML-qual, NuSMV and Petri nets. Version 3.1 (January 2026) requires Java 11 or later." ; schema1:url . kgr:ginsim-models.zginml a schema1:Product ; rdfs:label "GINsim Model Files (zginml)" ; dcterms:description "Logical models in the GINsim zginml format (a zip archive holding the GINML XML regulatory graph and associated settings), downloadable from each model page. About 90 zginml files cover the 70 models." ; schema1:url . kgr:glida.manual a schema1:DocumentationProduct ; rdfs:label "GLIDA Manual (Wayback Machine archive)" ; dcterms:description "GLIDA user manual (PDF), archived in the Internet Archive Wayback Machine." ; schema1:url . kgr:glida.portal a schema1:GraphicalInterface ; rdfs:label "GLIDA Web Database" ; dcterms:description "Former GLIDA web database for searching GPCRs and their ligands, cross-searchable by receptor or ligand, with a GPCR-ligand correlation map." ; schema1:url . kgr:glida.wayback a schema1:GraphicalInterface ; rdfs:label "GLIDA homepage (Wayback Machine archive)" ; dcterms:description "Archived snapshot of the GLIDA homepage (version 2.04) in the Internet Archive Wayback Machine, the last capture before the site went offline." ; schema1:url . kgr:globi.api a schema1:ProgrammingInterface ; rdfs:label "GloBI API" ; dcterms:description "REST-style API endpoints for programmatic species interaction queries (JSON/CSV)" ; schema1:url . kgr:globi.bee.interactions a schema1:Product ; rdfs:label "Bee Interaction Data from Global Biotic Interactions" ; dcterms:description "Bee interaction data extracted from Global Biotic Interactions (September 2021 snapshot), including flower visitation, parasitic interactions, and other bee-related interactions from natural history collections, community science, and scientific literature" ; schema1:url . kgr:globi.citations.csv a schema1:Product ; rdfs:label "GloBI data citations (CSV)" ; dcterms:description "Comma-separated data citations" ; schema1:url . kgr:globi.citations.tsv a schema1:Product ; rdfs:label "GloBI data citations (TSV)" ; dcterms:description "Tab-separated data citations" ; schema1:url . kgr:globi.datasets a schema1:Product ; rdfs:label "GloBI Datasets" ; dcterms:description "Bulk data export and dataset listing (downloads and dataset metadata)" ; schema1:url . kgr:globi.datasets.csv a schema1:Product ; rdfs:label "GloBI datasets index (CSV)" ; dcterms:description "Comma-separated dataset namespace index" ; schema1:url . kgr:globi.datasets.tsv a schema1:Product ; rdfs:label "GloBI datasets index (TSV)" ; dcterms:description "Tab-separated dataset namespace index" ; schema1:url . kgr:globi.docs a schema1:DocumentationProduct ; rdfs:label "GloBI Documentation" ; dcterms:description "About and methodological documentation, contribution guidelines, and references" ; schema1:url . kgr:globi.fields.csv a schema1:Product ; rdfs:label "interactionFields.csv" ; dcterms:description "Field (column) definitions CSV endpoint" ; schema1:url . kgr:globi.fields.json a schema1:Product ; rdfs:label "interactionFields.json" ; dcterms:description "Field (column) definitions JSON endpoint" ; schema1:url . kgr:globi.interactions.csv a schema1:Product ; rdfs:label "GloBI interpreted interactions (CSV)" ; dcterms:description "Comma-separated integrated species interaction pairs (interpreted names)" ; schema1:url . kgr:globi.interactions.nq a schema1:Product ; rdfs:label "GloBI interactions RDF (N-Quads)" ; dcterms:description "RDF N-Quads representation of interaction data" ; schema1:url . kgr:globi.interactions.tsv a schema1:Product ; rdfs:label "GloBI interpreted interactions (TSV)" ; dcterms:description "Tab-separated integrated species interaction pairs (interpreted names)" ; schema1:url . kgr:globi.neo4j.graphdb a schema1:Product ; rdfs:label "GloBI Neo4j graph database snapshot" ; dcterms:description "Neo4j graph database backup (v3.5.x) of interaction graph" ; schema1:url . kgr:globi.portal a schema1:GraphicalInterface ; rdfs:label "GloBI Portal" ; dcterms:description "Search and browse interface for interaction queries across integrated datasets" ; schema1:url . kgr:globi.refuted_interactions.csv a schema1:Product ; rdfs:label "GloBI refuted interactions (CSV)" ; dcterms:description "Comma-separated refuted species interaction pairs (interpreted names)" ; schema1:url . kgr:globi.refuted_interactions.tsv a schema1:Product ; rdfs:label "GloBI refuted interactions (TSV)" ; dcterms:description "Tab-separated refuted species interaction pairs (interpreted names)" ; schema1:url . kgr:globi.refuted_verbatim_interactions.csv a schema1:Product ; rdfs:label "GloBI refuted verbatim interactions (CSV)" ; dcterms:description "Comma-separated refuted verbatim species interaction pairs (original names)" ; schema1:url . kgr:globi.refuted_verbatim_interactions.tsv a schema1:Product ; rdfs:label "GloBI refuted verbatim interactions (TSV)" ; dcterms:description "Tab-separated refuted species interactions (original unresolved names)" ; schema1:url . kgr:globi.release a schema1:Product ; rdfs:label "GloBI Archived Release (Zenodo)" ; dcterms:description "Zenodo DOI badge pointing to latest archived release snapshot of integrated datasets" ; schema1:url . kgr:globi.taxon_cache.tsv a schema1:Product ; rdfs:label "GloBI taxonomic hierarchy cache" ; dcterms:description "Tab-separated taxonomic hierarchy and identifier cache" ; schema1:url . kgr:globi.taxon_map.tsv a schema1:Product ; rdfs:label "GloBI taxonomic name map" ; dcterms:description "Tab-separated taxonomic name mapping file" ; schema1:url . kgr:globi.verbatim_interactions.csv a schema1:Product ; rdfs:label "GloBI verbatim interactions (CSV)" ; dcterms:description "Comma-separated verbatim species interaction pairs (original unresolved names)" ; schema1:url . kgr:globi.verbatim_interactions.tsv a schema1:Product ; rdfs:label "GloBI verbatim interactions (TSV)" ; dcterms:description "Tab-separated verbatim species interaction pairs (original unresolved names)" ; schema1:url . kgr:glycocoo.kg-bioportal a schema1:GraphProduct ; rdfs:label "GLYCOCOO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of GlycoConjugate Ontology (GLYCOCOO), produced by KG-Bioportal from the BioPortal submission. The archive contains GLYCOCOO_nodes.tsv and GLYCOCOO_edges.tsv." ; schema1:url . kgr:glyconavi.portal a schema1:GraphicalInterface ; rdfs:label "GlycoNAVI Portal" ; dcterms:description "GlycoNAVI integrated portal for glycoscience research, including glycan structures, glycoproteins, glycosylation sites, glycan-related genes, diseases, and glycan analysis tools." ; schema1:url . kgr:glyconnect.api.rest a schema1:ProgrammingInterface ; rdfs:label "GlyConnect RESTful API" ; dcterms:description "RESTful API for accessing GlyConnect data" ; schema1:url . kgr:glyconnect.api.sparql a schema1:ProgrammingInterface ; rdfs:label "GlyConnect SPARQL Endpoint" ; dcterms:description "SPARQL endpoint for querying GlyConnect RDF data" ; schema1:url . kgr:glyconnect.compositions a schema1:Product ; rdfs:label "GlyConnect Glycan Compositions" ; dcterms:description "Compositions dataset containing glycan compositions" ; schema1:url . kgr:glyconnect.immunoglobulins a schema1:Product ; rdfs:label "GlyConnect Immunoglobulins Dataset" ; dcterms:description "Immunoglobulins dataset containing glycans commonly found on immunoglobulins" ; schema1:url . kgr:glyconnect.site a schema1:GraphicalInterface ; rdfs:label "GlyConnect Web Interface" ; dcterms:description "Web interface for exploring GlyConnect data" ; schema1:url . kgr:glycordf.documentation a schema1:DocumentationProduct ; rdfs:label "GlycoRDF Documentation" ; dcterms:description "Comprehensive documentation of the GlycoRDF ontology classes, predicates, and usage examples" ; schema1:url . kgr:glycordf.github a schema1:GraphicalInterface ; rdfs:label "GlycoRDF GitHub Repository" ; dcterms:description "GitHub repository containing ontology files, documentation, and source code for RDF generation" ; schema1:url . kgr:glycordf.homepage a schema1:GraphicalInterface ; rdfs:label "GlycoRDF Project Homepage" ; dcterms:description "Official project homepage with overview, documentation, and links to database implementations" ; schema1:url . kgr:glycordf.java-source a schema1:ProcessProduct ; rdfs:label "GlycoRDF Java Source Code" ; dcterms:description "Java source code for generating GlycoRDF data from glycomics databases" . kgr:glycordf.kg-bioportal a schema1:GraphProduct ; rdfs:label "GLYCORDF KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of GlycoRDF (GLYCORDF), produced by KG-Bioportal from the BioPortal submission. The archive contains GLYCORDF_nodes.tsv and GLYCORDF_edges.tsv." ; schema1:url . kgr:glycordf.ontology a schema1:OntologyProduct ; rdfs:label "GlycoRDF Ontology (OWL)" ; dcterms:description "OWL ontology file defining the GlycoRDF standard for representing glycomics data in RDF format" ; schema1:url . kgr:glycordf.wiki a schema1:DocumentationProduct ; rdfs:label "GlycoRDF Wiki" ; dcterms:description "Wiki with developer information, database provider documentation, and implementation guidelines" ; schema1:url . kgr:glygen.api a schema1:ProgrammingInterface ; rdfs:label "GlyGen API" ; dcterms:description "RESTful API for accessing GlyGen data" ; schema1:url . kgr:glygen.data.site a schema1:GraphicalInterface ; rdfs:label "GlyGen Data Downloads" ; dcterms:description "Interface for searching GlyGen protein and glycan data" ; schema1:url . kgr:glygen.site a schema1:GraphicalInterface ; rdfs:label "GlyGen Website" ; dcterms:description "Web interface for exploring GlyGen data" ; schema1:url . kgr:glytoucan.api a schema1:ProgrammingInterface ; rdfs:label "GlyTouCan API" ; dcterms:description "Public REST API (documented via Swagger UI) for programmatic access to GlyTouCan glycan structures and accession numbers." ; schema1:url . kgr:glytoucan.portal a schema1:GraphicalInterface ; rdfs:label "GlyTouCan Web Portal" ; dcterms:description "Web interface for searching, browsing, and registering glycan structures and looking up GlyTouCan accession numbers." ; schema1:url . kgr:glytoucan.sparql a schema1:ProgrammingInterface ; rdfs:label "GlyTouCan SPARQL Endpoint" ; dcterms:description "SPARQL endpoint providing RDF access to the GlyTouCan glycan structure repository and its semantic annotations." ; schema1:url . kgr:gmrepo.api a schema1:ProgrammingInterface ; rdfs:label "GMrepo RESTful API" ; dcterms:description "RESTful API giving programmable access to most database contents, such as curated project lists, runs and taxa associated with a phenotype MeSH identifier, and full taxonomic profiles by run. Example clients in R, Perl and Python are in the GMrepoProgrammableAccess repository." ; schema1:url . kgr:gmrepo.site a schema1:GraphicalInterface ; rdfs:label "GMrepo web site" ; dcterms:description "Web interface for browsing curated projects, runs, phenotypes, taxa and disease markers with graphical selectors and cross-dataset comparison" ; schema1:url . kgr:gnis.download a schema1:Product ; rdfs:label "GNIS Data Download" ; dcterms:description "GNIS data download portal providing bulk geographic names files for the United States, individual states, and topical extracts." ; schema1:url . kgr:gnis.linkeddata a schema1:GraphicalInterface ; rdfs:label "GNIS-LD (Linked Data)" ; dcterms:description "GNIS-LD, the Linked Data (RDF/GeoSPARQL) version of GNIS published by the STKO Lab at UC Santa Barbara, with a public SPARQL endpoint and downloadable triples." ; schema1:url . kgr:gnis.search a schema1:GraphicalInterface ; rdfs:label "GNIS Domestic Names Search" ; dcterms:description "Domestic Names search application for querying GNIS geographic features by name, feature class, state, and county." ; schema1:url . kgr:gno.json a schema1:OntologyProduct ; rdfs:label "gno.json" ; dcterms:description "Glycan Naming and Subsumption Ontology, JSON format (automated conversion from OWL)" ; schema1:url . kgr:gno.obo a schema1:OntologyProduct ; rdfs:label "gno.obo" ; dcterms:description "Glycan Naming and Subsumption Ontology, OBO format (automated conversion from OWL)" ; schema1:url . kgr:gno.owl a schema1:OntologyProduct ; rdfs:label "gno.owl" ; dcterms:description "Glycan Naming and Subsumption Ontology, OWL format (primary)" ; schema1:url . kgr:gnomad.api a schema1:ProgrammingInterface ; rdfs:label "gnomAD GraphQL API" ; dcterms:description "A public GraphQL API for programmatic queries against gnomAD variant and gene data." ; schema1:url . kgr:gnomad.browser a schema1:GraphicalInterface ; rdfs:label "gnomAD browser" ; dcterms:description "The gnomAD browser, providing search and display of variants, genes, transcripts, and regions with population allele frequencies and constraint metrics." ; schema1:url . kgr:gnomad.downloads a schema1:Product ; rdfs:label "gnomAD data downloads" ; dcterms:description "Bulk downloads of gnomAD variant data, coverage, and constraint files, distributed as VCF and Hail Table formats. Also mirrored on the AWS Registry of Open Data." ; schema1:url . kgr:gnps.docs a schema1:DocumentationProduct ; rdfs:label "GNPS Documentation" ; dcterms:description "GNPS documentation covering the platform, analysis tools, data preparation, molecular networking, spectral library search, dataset sharing, and community features." ; schema1:url . kgr:gnps.portal a schema1:GraphicalInterface ; rdfs:label "GNPS Web Portal" ; dcterms:description "GNPS web interface for molecular networking, library search, MASST search, public dataset browsing, spectral library curation, and related mass spectrometry analysis workflows." ; schema1:url . kgr:gnps.spectral_libraries a schema1:Product ; rdfs:label "GNPS Reference Spectral Libraries" ; dcterms:description "GNPS public MS/MS reference spectral library browser and curation interface." ; schema1:url . kgr:go-cam.api a schema1:ProgrammingInterface ; rdfs:label "GO-CAM API" ; dcterms:description "Programmatic access to GO-CAM models through the Gene Ontology API" ; schema1:url . kgr:go-cam.browser a schema1:GraphicalInterface ; rdfs:label "GO-CAM Browser" ; dcterms:description "Web interface for browsing, searching, and exploring GO-CAM models" ; schema1:url . kgr:go-cam.linkml-schema a schema1:DataModelProduct ; rdfs:label "GO-CAM LinkML Schema" ; dcterms:description "LinkML YAML schema for representing Gene Ontology Causal Activity Models (GO-CAMs)" ; schema1:url . kgr:go-cam.minerva a schema1:ProcessProduct ; rdfs:label "Minerva" ; dcterms:description "Server-side component for storing, validating, and reasoning over GO-CAM models" ; schema1:url . kgr:go-cam.model a schema1:DataModelProduct ; rdfs:label "GO-CAM Model Format" ; dcterms:description "RDF-based format for representing causal activity models in Gene Ontology" ; schema1:url . kgr:go-cam.noctua a schema1:GraphicalInterface ; rdfs:label "Noctua" ; dcterms:description "Web-based tool for collaborative editing of Gene Ontology Causal Activity Models (GO-CAMs)" ; schema1:url . kgr:go.amigo a schema1:GraphicalInterface ; rdfs:label "AmiGO 2" ; dcterms:description "Official GO browser for ontology terms, gene products, and annotations." ; schema1:url . kgr:go.api a schema1:ProgrammingInterface ; rdfs:label "Gene Ontology API" ; dcterms:description "Official Gene Ontology API for term, annotation, and related programmatic access." ; schema1:url . kgr:go.extensions.go-plus.json a schema1:OntologyProduct ; rdfs:label "GO-Plus" ; dcterms:description "As go-plus.owl, in obographs json format" ; schema1:url . kgr:go.extensions.go-plus.owl a schema1:OntologyProduct ; rdfs:label "GO-Plus" ; dcterms:description "The main ontology plus axioms connecting to select external ontologies, with subsets of those ontologies" ; schema1:url . kgr:go.extensions.go-taxon-groupings.owl a schema1:OntologyProduct ; rdfs:label "GO Taxon Groupings" ; dcterms:description "Classes added to ncbitaxon for groupings such as prokaryotes" ; schema1:url . kgr:go.extensions.go-taxon-subsets.owl a schema1:OntologyProduct ; rdfs:label "GO Taxon Subsets" ; dcterms:description "Classes added to ncbitaxon for taxon subsets such as prokaryotes" ; schema1:url . kgr:go.go-base.owl a schema1:OntologyProduct ; rdfs:label "GO Base Module" ; dcterms:description "The main ontology plus axioms connecting to select external ontologies, excluding the external ontologies themselves" ; schema1:url . kgr:go.go-basic.json a schema1:OntologyProduct ; rdfs:label "GO-Basic, Filtered, for use with legacy tools (JSON)" ; dcterms:description "As go-basic.obo, in json format" ; schema1:url . kgr:go.go-basic.obo a schema1:OntologyProduct ; rdfs:label "GO-Basic, Filtered, for use with legacy tools" ; dcterms:description "Basic version of the GO, filtered such that the graph is guaranteed to be acyclic and annotations can be propagated up the graph. The relations included are is a, part of, regulates, negatively regulates and positively regulates. This version excludes relationships that cross the 3 GO hierarchies." ; schema1:url . kgr:go.gocams.ttl a schema1:GraphProduct ; rdfs:label "GO-CAM TTL Archive" ; dcterms:description "Pathway-like GO-CAM causal activity models distributed as RDF Turtle." ; schema1:url . kgr:go.json a schema1:OntologyProduct ; rdfs:label "GO (JSON edition)" ; dcterms:description "Equivalent to go.owl, in obograph json format" ; schema1:url . kgr:go.kg-bioportal a schema1:GraphProduct ; rdfs:label "GO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Gene Ontology (GO), produced by KG-Bioportal from the BioPortal submission. The archive contains GO_nodes.tsv and GO_edges.tsv." ; schema1:url . kgr:go.obo a schema1:OntologyProduct ; rdfs:label "GO (OBO Format edition)" ; dcterms:description "Equivalent to go.owl, in obo format" ; schema1:url . kgr:go.owl a schema1:OntologyProduct ; rdfs:label "GO (OWL edition)" ; dcterms:description "The main ontology in OWL. This is self contained and does not have connections to other OBO ontologies" ; schema1:url . kgr:go.snapshot.go.obo a schema1:OntologyProduct ; rdfs:label "GO (OBO Format edition), daily snapshot release" ; dcterms:description "Equivalent to go.owl, but released daily. Note the snapshot release is not archived." ; schema1:url . kgr:go.snapshot.go.owl a schema1:OntologyProduct ; rdfs:label "GO (OWL edition), daily snapshot release" ; dcterms:description "Equivalent to go.owl, but released daily. Note the snapshot release is not archived." ; schema1:url . kgr:goa.documentation a schema1:DocumentationProduct ; rdfs:label "GOA Documentation" ; dcterms:description "Documentation including FAQ, About pages, and contact information" ; schema1:url . kgr:goa.portal a schema1:GraphicalInterface ; rdfs:label "GOA Website" ; dcterms:description "Web portal for accessing GOA information, statistics, and navigation to downloads" ; schema1:url . kgr:goldbook.api a schema1:ProgrammingInterface ; rdfs:label "Gold Book API" ; dcterms:description "Gold Book API (v1.1) for retrieving single terms or sources by code in HTML, XML or JSON, with an optional download flag." ; schema1:url . kgr:goldbook.portal a schema1:GraphicalInterface ; rdfs:label "IUPAC Gold Book Website" ; dcterms:description "Gold Book website for browsing and searching term definitions, with alphabetical, division, organization and source indexes." ; schema1:url . kgr:goldbook.sources.json a schema1:Product ; rdfs:label "Gold Book Sources JSON" ; dcterms:description "Index of the IUPAC recommendations and other source documents that Gold Book definitions cite, as a JSON download." ; schema1:url . kgr:goldbook.terms.json a schema1:Product ; rdfs:label "Gold Book Terms JSON" ; dcterms:description "All Gold Book terms with definitions as a single JSON download, from the Gold Book API endpoint /terms/index/all/json/download." ; schema1:url . kgr:goldbook.terms.xml a schema1:Product ; rdfs:label "Gold Book Terms XML" ; dcterms:description "All Gold Book terms with definitions as a single XML download, from the Gold Book API endpoint /terms/index/all/xml/download." ; schema1:url . kgr:goldterms.bioportal a schema1:GraphicalInterface ; rdfs:label "GOLDTERMS on BioPortal" ; schema1:url . kgr:goldterms.data.owl a schema1:DataModelProduct ; rdfs:label "Main GOLDTERMS OWL release" ; schema1:url . kgr:goldterms.definitions.yaml a schema1:DataModelProduct ; rdfs:label "GOLD definitions in YAML format" ; schema1:url . kgr:goldterms.kg-bioportal a schema1:GraphProduct ; rdfs:label "GOLDTERMS KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of GOLD Ecosystem Classification (GOLDTERMS), produced by KG-Bioportal from the BioPortal submission. The archive contains GOLDTERMS_nodes.tsv and GOLDTERMS_edges.tsv." ; schema1:url . kgr:gomapman.kg-bioportal a schema1:GraphProduct ; rdfs:label "GMM KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of GoMapMan (GMM), produced by KG-Bioportal from the BioPortal submission. The archive contains GMM_nodes.tsv and GMM_edges.tsv." ; schema1:url . kgr:gomapman.portal a schema1:GraphicalInterface ; rdfs:label "GoMapMan Web Portal" ; dcterms:description "Web portal for browsing, searching, and visualizing the MapMan ontology and manually curated plant gene functional annotations across supported crop and model plant species." ; schema1:url . kgr:google-reviews.site a schema1:GraphicalInterface ; rdfs:label "Google Maps Reviews" ; dcterms:description "User-contributed ratings and reviews of places and organizations, accessed through Google Maps." ; schema1:url . kgr:gp-kg.process.kg-predict a schema1:ProcessProduct ; rdfs:label "KG-Predict" ; dcterms:description "A computational framework for drug repurposing, used with GP-KG" ; schema1:url . kgr:gpcrdb.code a schema1:ProcessProduct ; rdfs:label "Protwis Source Code" ; dcterms:description "Protwis, the Django-based source code behind GPCRdb, including the database build pipeline and web tools." ; schema1:url . kgr:gpcrdb.docs a schema1:DocumentationProduct ; rdfs:label "GPCRdb Documentation" ; dcterms:description "GPCRdb documentation covering receptors, structures, ligands, mutations, generic residue numbering, web services, local installation and the legal notice." ; schema1:url . kgr:gpmdb.portal a schema1:GraphicalInterface ; rdfs:label "GPMDB Web Interface" ; dcterms:description "GPMDB web interface for searching peptide and protein identifications, observation counts, modifications and variants." ; schema1:url . kgr:gpmdb.xtandem a schema1:ProcessProduct ; rdfs:label "X! Tandem" ; dcterms:description "X! Tandem, the open source search engine that matches tandem mass spectra to peptide sequences and underlies the GPM pipeline that populates GPMDB. Latest release ALANINE (2017.02.01)." ; schema1:url . kgr:gramene a "Organization" ; rdfs:label "Gramene Project" . kgr:greenclaims.dataset a schema1:Product ; rdfs:label "Greenwashing Detection Dataset (GitHub)" ; dcterms:description "CSV dataset of company environmental claims, greenwashing accusations, company descriptions, environmental certificates, and source URLs, hosted in the GreenwashingDetectionDataset GitHub repository. No further commits have been pushed since September 2024." ; schema1:url . kgr:greengenes.ftp a schema1:Product ; rdfs:label "Greengenes2 FTP Archive" ; dcterms:description "FTP archive containing Greengenes2 database files including phylogenetic trees, taxonomy, and sequence data" ; schema1:url . kgr:greengenes.phylogeny a schema1:Product ; rdfs:label "Greengenes2 Phylogenetic Tree" ; dcterms:description "Reference phylogenetic tree in Newick format containing unified microbial phylogeny" ; schema1:url . kgr:greengenes.portal a schema1:GraphicalInterface ; rdfs:label "Greengenes2 Web Portal" ; dcterms:description "Web-based search interface for querying Greengenes2 database by species, ASV sequences, or clade names" ; schema1:url . kgr:greengenes.qiime2-plugin a schema1:ProcessProduct ; rdfs:label "q2-greengenes2 Plugin" ; dcterms:description "QIIME 2 plugin for integrating Greengenes2 data into microbiome analysis workflows" ; schema1:url . kgr:greengenes.sequences a schema1:Product ; rdfs:label "Greengenes2 Sequences" ; dcterms:description "16S rRNA gene sequences in FASTA format for all organisms in the database" ; schema1:url . kgr:greengenes.taxonomy a schema1:Product ; rdfs:label "Greengenes2 Taxonomy" ; dcterms:description "Taxonomic assignments and metadata for all sequences in the database" ; schema1:url . kgr:gsso.json a schema1:OntologyProduct ; rdfs:label "gsso.json" ; dcterms:description "Gender, Sex, and Sexual Orientation (GSSO) ontology in JSON format" ; schema1:url . kgr:gsso.obo a schema1:OntologyProduct ; rdfs:label "gsso.obo" ; dcterms:description "Gender, Sex, and Sexual Orientation (GSSO) ontology in OBO format" ; schema1:url . kgr:gsso.owl a schema1:OntologyProduct ; rdfs:label "gsso.owl" ; dcterms:description "Gender, Sex, and Sexual Orientation (GSSO) ontology in OWL format" ; schema1:url . kgr:gtdb.downloads a schema1:DocumentationProduct ; rdfs:label "GTDB Downloads" ; dcterms:description "GTDB downloads page listing release mirrors, data files, and related software such as GTDB-Tk." ; schema1:url . kgr:gtex.api a schema1:ProgrammingInterface ; rdfs:label "GTEx REST API" ; dcterms:description "GTEx REST API for programmatic access to gene expression and eQTL data" ; schema1:url . kgr:gtex.bulk-data a schema1:Product ; rdfs:label "GTEx Bulk Data Downloads" ; dcterms:description "Complete GTEx v8 data including gene expression, transcript expression, exon expression, and junction data across tissues" ; schema1:url . kgr:gtex.eqtl-data a schema1:Product ; rdfs:label "GTEx eQTL Data" ; dcterms:description "eQTL (expression quantitative trait loci) data linking genetic variants to gene expression across tissues" ; schema1:url . kgr:gtex.portal a schema1:GraphicalInterface ; rdfs:label "GTEx Portal" ; dcterms:description "GTEx Portal web interface for exploring tissue-specific gene expression data, eQTLs, and other genomic analyses" ; schema1:url . kgr:gtopdb.api.rest a schema1:ProgrammingInterface ; rdfs:label "Guide to Pharmacology REST API" ; dcterms:description "RESTful web services enabling computational access to most of the GtoPdb data in JSON format" ; schema1:url . kgr:gtopdb.approved_drugs.csv a schema1:Product ; rdfs:label "GtoPdb Approved Drugs Dataset" ; dcterms:description "Detailed interactions list for approved drugs and their targets" ; schema1:url . kgr:gtopdb.database a schema1:Product ; rdfs:label "GtoPdb Full Database" ; dcterms:description "Complete PostgreSQL database dump of the current Guide to Pharmacology database" ; schema1:url . kgr:gtopdb.download.rdf a schema1:Product ; rdfs:label "GtoPdb RDF Dataset" ; dcterms:description "RDF/linked data format of the GtoPdb data (target-ligand interactions with supporting information)" ; schema1:url . kgr:gtopdb.download.sdf a schema1:Product ; rdfs:label "GtoPdb Ligand SDF File" ; dcterms:description "SDF file containing chemical structures with SMILES for all ligands in the database" ; schema1:url . kgr:gtopdb.immunopharmacology a schema1:GraphicalInterface ; rdfs:label "Guide to IMMUNOPHARMACOLOGY" ; dcterms:description "An extension of the Guide to PHARMACOLOGY database providing immunological access-point to GtoPdb data" ; schema1:url . kgr:gtopdb.interactions.csv a schema1:Product ; rdfs:label "GtoPdb Interactions Dataset" ; dcterms:description "Comprehensive dataset of all interactions between ligands and targets" ; schema1:url . kgr:gtopdb.ligands.csv a schema1:Product ; rdfs:label "GtoPdb Ligands Dataset" ; dcterms:description "Complete list of ligands including drugs, small molecules, and other bioactive compounds" ; schema1:url . kgr:gtopdb.malaria a schema1:GraphicalInterface ; rdfs:label "Guide to MALARIA PHARMACOLOGY" ; dcterms:description "A specialized portal providing optimized access for the malaria research community" ; schema1:url . kgr:gtopdb.targets.csv a schema1:Product ; rdfs:label "GtoPdb Targets and Families" ; dcterms:description "Complete list of drug targets and their families with detailed information" ; schema1:url . kgr:gtopdb.web a schema1:GraphicalInterface ; rdfs:label "Guide to Pharmacology Web Interface" ; dcterms:description "A web-based interface for accessing and browsing drug target data, ligand information, and pharmacological interactions" ; schema1:url . kgr:gtr.docs a schema1:DocumentationProduct ; rdfs:label "About GTR" ; dcterms:description "GTR documentation pages describing the registry, its data model and submission process." ; schema1:url . kgr:gtr.portal a schema1:GraphicalInterface ; rdfs:label "GTR Web Portal" ; dcterms:description "Web portal for searching genetic tests, laboratories, conditions and genes registered in GTR." ; schema1:url . kgr:gtr.test_version a schema1:Product ; rdfs:label "GTR Test Version History" ; dcterms:description "Tab-delimited test version history for all publicly available GTR tests, with laboratory, location, CLIA number, conditions, methods, platforms, genes and status fields for each test version." ; schema1:url . kgr:gtrnadb.archives a schema1:Product ; rdfs:label "Previous Releases Archive" ; dcterms:description "Archive of previous GtRNAdb data releases with change logs" ; schema1:url . kgr:gtrnadb.blast a schema1:GraphicalInterface ; rdfs:label "Search by Sequence (BLAST)" ; dcterms:description "BLAST search interface for sequence similarity searches against all tRNAs in the database" ; schema1:url . kgr:gtrnadb.browse a schema1:GraphicalInterface ; rdfs:label "Browse by Phylogeny" ; dcterms:description "Browse tRNA predictions organized by phylogenetic taxonomy (Eukaryota, Archaea, Bacteria)" ; schema1:url . kgr:gtrnadb.docs a schema1:DocumentationProduct ; rdfs:label "User Guide" ; dcterms:description "Comprehensive user guide for GtRNAdb features and search capabilities" ; schema1:url . kgr:gtrnadb.faq a schema1:DocumentationProduct ; rdfs:label "FAQ" ; dcterms:description "Frequently asked questions about GtRNAdb and tRNA gene predictions" ; schema1:url . kgr:gtrnadb.portal a schema1:GraphicalInterface ; rdfs:label "GtRNAdb Web Portal" ; dcterms:description "Web portal for browsing tRNA gene predictions organized by phylogenetic domain and species" ; schema1:url . kgr:gtrnadb.sifter a schema1:GraphicalInterface ; rdfs:label "tRNA Sifter" ; dcterms:description "Search tRNAs by species, amino acid isotype, anticodon, intron count, tRNA score, and structural features" ; schema1:url . kgr:gutmdisorder.literature_associations a schema1:Product ; rdfs:label "gutMDisorder v2.0 literature associations" ; dcterms:description "All literature-curated gut microbe associations with disorders and interventions from gutMDisorder v2.0, as an Excel workbook" ; schema1:url . kgr:gutmdisorder.rawdata_associations a schema1:Product ; rdfs:label "gutMDisorder v2.0 raw data associations" ; dcterms:description "Gut microbe associations with disorders and interventions derived from re-annotated raw sequencing data in gutMDisorder v2.0, as an Excel workbook" ; schema1:url . kgr:gutmdisorder.site a schema1:GraphicalInterface ; rdfs:label "gutMDisorder web site" ; dcterms:description "Web interface for browsing and searching gut microbe associations with disorders and interventions, with a resource page listing the download files" ; schema1:url . kgr:gutmgene.site a schema1:GraphicalInterface ; rdfs:label "GutMGene site" ; dcterms:description "GutMGene data and interface" ; schema1:url . kgr:gwascatalog.api a schema1:ProgrammingInterface ; rdfs:label "GWAS Catalog REST API v2" ; dcterms:description "REST API providing programmatic access to GWAS Catalog studies, associations, variants, traits, and summary statistics metadata" ; schema1:url . kgr:gwascatalog.associations.owl a schema1:Product ; rdfs:label "GWAS Catalog Associations OWL" ; dcterms:description "RDF/OWL representation of GWAS Catalog associations enabling semantic integration; OWL updates were frozen on 2025-01-30." ; schema1:url . kgr:gwascatalog.associations.tsv a schema1:Product ; rdfs:label "GWAS Catalog Associations TSV" ; dcterms:description "Full data dump of GWAS Catalog associations in tab-delimited format (SNP-trait association data, ontology-annotated full release). The flat gwas-catalog-associations.tsv file was retired from releases/latest/; the current canonical full associations download is the zipped ontology-annotated TSV." ; schema1:url . kgr:gwascatalog.diagram.current a schema1:DocumentationProduct ; rdfs:label "GWAS Catalog Diagram" ; dcterms:description "Interactive GWAS Catalog diagram showing trait mappings and parent categories." ; schema1:url . kgr:gwascatalog.studies.tsv a schema1:Product ; rdfs:label "GWAS Catalog Studies TSV" ; dcterms:description "Study metadata file containing per-study information for GWAS Catalog entries" ; schema1:url . kgr:gwascatalog.summary_statistics.ftp a schema1:DocumentationProduct ; rdfs:label "GWAS Catalog Summary Statistics FTP" ; dcterms:description "Harmonised summary statistics landing page (FTP directory containing per-study summary statistics under CC0 where available)" ; schema1:url . kgr:gwascatalog.traits_efo.tsv a schema1:Product ; rdfs:label "GWAS Catalog Trait EFO Mappings TSV" ; dcterms:description "EFO trait mapping file linking GWAS Catalog reported traits to Experimental Factor Ontology terms" ; schema1:url . kgr:gwascatalog.web a schema1:GraphicalInterface ; rdfs:label "GWAS Catalog Web Portal" ; dcterms:description "Web interface for searching, browsing, and visualizing curated GWAS variant-trait associations and study metadata" ; schema1:url . kgr:hancestro.owl a schema1:OntologyProduct ; rdfs:label "HANCESTRO" ; dcterms:description "The full version of HANCESTRO in OWL format, with BFO upper hierarchy for easier integration with other ontologies" ; schema1:url . kgr:hao.depictions.owl a schema1:OntologyProduct ; rdfs:label "hao.depictions.owl" ; dcterms:description "Hymenoptera Anatomy Ontology in OWL format" ; schema1:url . kgr:hao.kg-bioportal a schema1:GraphProduct ; rdfs:label "HAO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Hymenoptera Anatomy Ontology (HAO), produced by KG-Bioportal from the BioPortal submission. The archive contains HAO_nodes.tsv and HAO_edges.tsv." ; schema1:url . kgr:hao.obo a schema1:OntologyProduct ; rdfs:label "hao.obo" ; dcterms:description "Hymenoptera Anatomy Ontology in OBO format" ; schema1:url . kgr:hao.owl a schema1:OntologyProduct ; rdfs:label "hao.owl" ; dcterms:description "Hymenoptera Anatomy Ontology in OWL format" ; schema1:url . kgr:harmonizome.documentation a schema1:DocumentationProduct ; rdfs:label "Harmonizome Documentation" ; dcterms:description "Harmonizome documentation describing dataset pages, API access, downloads, and the Harmonizome knowledge graph API and graph serialization." ; schema1:url . kgr:harmonizome.kg-api a schema1:ProgrammingInterface ; rdfs:label "Harmonizome Knowledge Graph API" ; dcterms:description "API endpoint for programmatic access to Harmonizome knowledge graph neighborhoods, with filter parameters documented in the Harmonizome knowledge graph API guide." ; schema1:url . kgr:harmonizome.kg-portal a schema1:GraphicalInterface ; rdfs:label "Harmonizome Knowledge Graph Explorer" ; dcterms:description "Interactive web interface for exploring the Harmonizome knowledge graph with gene-centric network visualization." ; schema1:url . kgr:harmonizome.portal a schema1:GraphicalInterface ; rdfs:label "Harmonizome Portal" ; dcterms:description "Harmonizome 3.0 web portal for searching and exploring processed gene and protein datasets, resources, genes, attributes, and associations." ; schema1:url . kgr:hifld.api a schema1:ProgrammingInterface ; rdfs:label "HIFLD Open Data API" ; dcterms:description "ArcGIS Hub open-data API access to HIFLD datasets via GeoServices, WMS, and WFS endpoints for programmatic querying and download." ; schema1:url . kgr:hifld.catalog a schema1:Product ; rdfs:label "HIFLD Open Data Catalog" ; dcterms:description "HIFLD ArcGIS Hub open-data catalog of U.S. critical infrastructure geospatial datasets, with downloads in CSV, GeoJSON, KML, GeoTIFF, and shapefile formats." ; schema1:url . kgr:hippie.experimental-scores a schema1:Product ; rdfs:label "HIPPIE Experimental Technique Scores" ; dcterms:description "TSV table of experimental-technique scores used by HIPPIE to score protein-protein interaction evidence" ; schema1:url . kgr:hippie.portal a schema1:Product ; rdfs:label "HIPPIE Portal" ; dcterms:description "HIPPIE portal for human protein-protein interaction reference data." ; schema1:url . kgr:hmdb.fasta.enzymes a schema1:Product ; rdfs:label "HMDB Enzyme Protein Sequences (FASTA)" ; dcterms:description "All metabolite metabolizing enzyme protein sequences (FASTA)" ; schema1:url . kgr:hmdb.fasta.genes a schema1:Product ; rdfs:label "HMDB Gene Sequences (FASTA)" ; dcterms:description "All metabolite metabolizing enzyme gene sequences (FASTA)" ; schema1:url . kgr:hmdb.portal a schema1:GraphicalInterface ; rdfs:label "HMDB Web Portal" ; dcterms:description "Web portal providing integrated search, metabolite pages (MetaboCards), spectra, pathways, and download access" ; schema1:url . kgr:hmdb.spectra.all.peaklists a schema1:Product ; rdfs:label "HMDB All Raw Spectra Peaklists (TXT)" ; dcterms:description "All raw spectra peaklists (aggregated TXT archive)" ; schema1:url . kgr:hmdb.spectra.all.xml a schema1:Product ; rdfs:label "HMDB All Spectra (XML)" ; dcterms:description "All spectra files aggregate (XML)" ; schema1:url . kgr:hmdb.spectra.gc.experimental.xml a schema1:Product ; rdfs:label "HMDB GC-MS Experimental Spectra (XML)" ; dcterms:description "Experimental GC-MS spectra collection (XML)" ; schema1:url . kgr:hmdb.spectra.gc.predicted.txt a schema1:Product ; rdfs:label "HMDB GC-MS Predicted Peaklists (TXT)" ; dcterms:description "Predicted GC-MS spectra peaklist text files archive" ; schema1:url . kgr:hmdb.spectra.gc.predicted.xml a schema1:Product ; rdfs:label "HMDB GC-MS Predicted Spectra (XML)" ; dcterms:description "Predicted GC-MS spectra collection (XML)" ; schema1:url . kgr:hmdb.spectra.mass.images a schema1:Product ; rdfs:label "HMDB Mass Spectra Images" ; dcterms:description "Mass spectra image files archive" ; schema1:url . kgr:hmdb.spectra.msms.experimental.txt a schema1:Product ; rdfs:label "HMDB MS-MS Experimental Peaklists (TXT)" ; dcterms:description "Experimental MS-MS spectra peaklist text files archive" ; schema1:url . kgr:hmdb.spectra.msms.experimental.xml a schema1:Product ; rdfs:label "HMDB MS-MS Experimental Spectra (XML)" ; dcterms:description "Experimental MS-MS spectra collection (XML)" ; schema1:url . kgr:hmdb.spectra.msms.predicted.txt a schema1:Product ; rdfs:label "HMDB MS-MS Predicted Peaklists (TXT)" ; dcterms:description "Predicted MS-MS spectra peaklist text files archive" ; schema1:url . kgr:hmdb.spectra.msms.predicted.xml a schema1:Product ; rdfs:label "HMDB MS-MS Predicted Spectra (XML)" ; dcterms:description "Predicted MS-MS spectra collection (XML)" ; schema1:url . kgr:hmdb.spectra.nmr.fid a schema1:Product ; rdfs:label "HMDB NMR Spectra FID Files" ; dcterms:description "NMR spectra FID files archive" ; schema1:url . kgr:hmdb.spectra.nmr.peaklist a schema1:Product ; rdfs:label "HMDB NMR Peaklists (TXT)" ; dcterms:description "Raw NMR peaklist text files archive" ; schema1:url . kgr:hmdb.spectra.nmr.xml a schema1:Product ; rdfs:label "HMDB NMR Spectra (XML)" ; dcterms:description "NMR spectra collection (XML)" ; schema1:url . kgr:hmdb.structures.sdf a schema1:Product ; rdfs:label "HMDB Metabolite Structures (SDF)" ; dcterms:description "All metabolite structures (SDF)" ; schema1:url . kgr:hmdb.xml.metabolites a schema1:Product ; rdfs:label "HMDB All Metabolites (XML)" ; dcterms:description "All metabolites dataset (XML)" ; schema1:url . kgr:hmdb.xml.metabolites.csf a schema1:Product ; rdfs:label "HMDB CSF Metabolites (XML)" ; dcterms:description "Cerebrospinal fluid (CSF) metabolites subset (XML)" ; schema1:url . kgr:hmdb.xml.metabolites.feces a schema1:Product ; rdfs:label "HMDB Feces Metabolites (XML)" ; dcterms:description "Feces metabolites subset (XML)" ; schema1:url . kgr:hmdb.xml.metabolites.saliva a schema1:Product ; rdfs:label "HMDB Saliva Metabolites (XML)" ; dcterms:description "Saliva metabolites subset (XML)" ; schema1:url . kgr:hmdb.xml.metabolites.serum a schema1:Product ; rdfs:label "HMDB Serum Metabolites (XML)" ; dcterms:description "Serum metabolites subset (XML)" ; schema1:url . kgr:hmdb.xml.metabolites.sweat a schema1:Product ; rdfs:label "HMDB Sweat Metabolites (XML)" ; dcterms:description "Sweat metabolites subset (XML)" ; schema1:url . kgr:hmdb.xml.metabolites.urine a schema1:Product ; rdfs:label "HMDB Urine Metabolites (XML)" ; dcterms:description "Urine metabolites subset (XML)" ; schema1:url . kgr:hmdb.xml.proteins a schema1:Product ; rdfs:label "HMDB All Proteins (XML)" ; dcterms:description "All proteins dataset (XML)" ; schema1:url . kgr:hocomoco.core-pwms a schema1:Product ; rdfs:label "HOCOMOCO v11 Core Human Mononucleotide PWMs" ; dcterms:description "HOCOMOCO v11 core collection human mononucleotide PWMs (flat text)" ; schema1:url . kgr:hocomoco.downloads a schema1:Product ; rdfs:label "HOCOMOCO Downloads" ; dcterms:description "HOCOMOCO download portal with PWM/PCM models for human and mouse in multiple formats (JASPAR, MEME, TRANSFAC, HOMER) plus annotations and thresholds" ; schema1:url . kgr:hocomoco.full-pwms a schema1:Product ; rdfs:label "HOCOMOCO v11 Full Human Mononucleotide PWMs" ; dcterms:description "HOCOMOCO v11 full collection human mononucleotide PWMs (flat text), including secondary motif subtypes" ; schema1:url . kgr:hom.kg-bioportal a schema1:GraphProduct ; rdfs:label "HOM KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Ontology of Homology and Related Concepts in Biology (HOM), produced by KG-Bioportal from the BioPortal submission. The archive contains HOM_nodes.tsv and HOM_edges.tsv." ; schema1:url . kgr:hom.owl a schema1:OntologyProduct ; rdfs:label "hom.owl" ; dcterms:description "Homology Ontology in OWL format" ; schema1:url . kgr:homologene.data a schema1:Product ; rdfs:label "HomoloGene Data File (Build 68 - Archive)" ; dcterms:description "Tab-delimited file containing HomoloGene group IDs, taxonomy IDs, gene IDs, gene symbols, and protein accessions for the final build 68 (2014)" ; schema1:url . kgr:homologene.ftp_archive a schema1:DocumentationProduct ; rdfs:label "HomoloGene FTP Archive" ; dcterms:description "Complete FTP archive of all HomoloGene builds from build 35 (2004) through build 68 (2014), retained for historical purposes" ; schema1:url . kgr:homologene.xml a schema1:Product ; rdfs:label "HomoloGene XML Data (Build 68 - Archive)" ; dcterms:description "XML dump of the HomoloGene build 68 containing detailed homology group information, gene and protein links, and distance analysis results" ; schema1:url . kgr:hp.genes_to_phenotype.txt a schema1:OntologyProduct ; rdfs:label "HPO gene to phenotype annotations" ; dcterms:description "https://hpo.jax.org/app/data/annotations" ; schema1:url . kgr:hp.hp-base.json a schema1:OntologyProduct ; rdfs:label "HPO base release in obographs JSON format" ; dcterms:description "Manually curated version of the ontology without the use of a reasoner, with references to imported terms, in obographs JSON file format." ; schema1:url . kgr:hp.hp-base.obo a schema1:OntologyProduct ; rdfs:label "HPO base release in OBO format" ; dcterms:description "Manually curated version of the ontology without the use of a reasoner, with references to imported terms, in OBO file format." ; schema1:url . kgr:hp.hp-base.owl a schema1:OntologyProduct ; rdfs:label "HPO base release in OWL format" ; dcterms:description "Manually curated version of the ontology without the use of a reasoner, with references to imported terms, in OWL (RDF/XML) file format." ; schema1:url . kgr:hp.hp-full.json a schema1:OntologyProduct ; rdfs:label "HPO full release in obographs JSON format" ; dcterms:description "Version of the ontology automatically classified with the use of a reasoner, including all imported terms, in obographs JSON file format." ; schema1:url . kgr:hp.hp-full.obo a schema1:OntologyProduct ; rdfs:label "HPO full release in OBO format" ; dcterms:description "Version of the ontology automatically classified with the use of a reasoner, including all imported terms, in OBO file format." ; schema1:url . kgr:hp.hp-full.owl a schema1:OntologyProduct ; rdfs:label "HPO full release in OWL format" ; dcterms:description "Version of the ontology automatically classified with the use of a reasoner, including all imported terms, in OWL (RDF/XML) file format." ; schema1:url . kgr:hp.hp-international.json a schema1:OntologyProduct ; rdfs:label "HPO International Edition in obographs JSON format" ; dcterms:description "Version of the ontology corresponding to the primary release (hp.owl), with translated labels, synonyms, and definitions, in obographs JSON file format." ; schema1:url . kgr:hp.hp-international.obo a schema1:OntologyProduct ; rdfs:label "HPO International Edition in OBO format" ; dcterms:description "Version of the ontology corresponding to the primary release (hp.owl), with translated labels, synonyms, and definitions, in OBO file format." ; schema1:url . kgr:hp.hp-international.owl a schema1:OntologyProduct ; rdfs:label "HPO International Edition in OWL format" ; dcterms:description "Version of the ontology corresponding to the primary release (hp.owl), with translated labels, synonyms, and definitions, in OWL (RDF/XML) file format." ; schema1:url . kgr:hp.hp-simple-non-classified.json a schema1:OntologyProduct ; rdfs:label "HPO simple, manually classified, without imports in obographs JSON format" ; dcterms:description "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in obographs JSON file format." ; schema1:url . kgr:hp.hp-simple-non-classified.obo a schema1:OntologyProduct ; rdfs:label "HPO simple, manually classified, without imports in OBO format" ; dcterms:description "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in OBO file format." ; schema1:url . kgr:hp.hp-simple-non-classified.owl a schema1:OntologyProduct ; rdfs:label "HPO simple, manually classified, without imports in OWL format" ; dcterms:description "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in OWL (RDF/XML) file format." ; schema1:url . kgr:hp.json a schema1:OntologyProduct ; rdfs:label "Official HPO release in obographs JSON format" ; dcterms:description "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in obographs JSON format." ; schema1:url . kgr:hp.kg-bioportal a schema1:GraphProduct ; rdfs:label "HP KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Human Phenotype Ontology (HP), produced by KG-Bioportal from the BioPortal submission. The archive contains HP_nodes.tsv and HP_edges.tsv." ; schema1:url . kgr:hp.obo a schema1:OntologyProduct ; rdfs:label "Official HPO release in OBO format" ; dcterms:description "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in OBO file format." ; schema1:url . kgr:hp.owl a schema1:OntologyProduct ; rdfs:label "Official HPO release in OWL" ; dcterms:description "Manually classified version of the ontology without the use of a reasoner, with imported terms, in OWL format (RDF/XML)." ; schema1:url . kgr:hp.phenotype.hpoa a schema1:OntologyProduct ; rdfs:label "HPO Annotations (Phenotype to Disease)" ; dcterms:description "https://hpo.jax.org/app/data/annotations" ; schema1:url . kgr:hp.phenotype_to_genes.txt a schema1:OntologyProduct ; rdfs:label "HPO phenotype to gene annotations" ; dcterms:description "https://hpo.jax.org/app/data/annotations" ; schema1:url . kgr:hpa.api.json a schema1:ProgrammingInterface ; rdfs:label "HPA JSON API" ; dcterms:description "Programmatic access to individual protein entries in JSON format via Ensembl ID" ; schema1:url . kgr:hpa.api.rdf a schema1:ProgrammingInterface ; rdfs:label "HPA RDF API" ; dcterms:description "Programmatic access to individual protein entries in RDF format via Ensembl ID" ; schema1:url . kgr:hpa.api.tsv a schema1:ProgrammingInterface ; rdfs:label "HPA TSV API" ; dcterms:description "Programmatic access to individual protein entries in TSV format via Ensembl ID" ; schema1:url . kgr:hpa.api.xml a schema1:ProgrammingInterface ; rdfs:label "HPA XML API" ; dcterms:description "Programmatic access to individual protein entries in XML format via Ensembl ID" ; schema1:url . kgr:hpa.blood_protein a schema1:Product ; rdfs:label "HPA Blood Protein Data" ; dcterms:description "Blood atlas protein concentration data measured in blood by immunoassay and mass spectrometry" ; schema1:url . kgr:hpa.brain_rna a schema1:Product ; rdfs:label "HPA Brain RNA Expression Data" ; dcterms:description "Brain atlas transcript expression data summarized across brain regions and subregions, including HPA brain region datasets and related transcript profiles" ; schema1:url . kgr:hpa.normal_tissue a schema1:Product ; rdfs:label "HPA Normal Tissue Data" ; dcterms:description "Tissue atlas immunohistochemistry expression profiles for proteins across 45 human tissues, with annotated cell types and expression reliability data" ; schema1:url . kgr:hpa.pathology a schema1:Product ; rdfs:label "HPA Pathology Data" ; dcterms:description "Cancer atlas pathology and prognostic data, including immunohistochemistry staining profiles across tumor tissues and survival associations from TCGA-linked cohorts" ; schema1:url . kgr:hpa.portal a schema1:GraphicalInterface ; rdfs:label "Human Protein Atlas Portal" ; dcterms:description "Main web portal for exploring protein expression profiles across tissues, cells, and disease states" ; schema1:url . kgr:hpa.proteinatlas.json a schema1:Product ; rdfs:label "HPA Complete Data (JSON)" ; dcterms:description "Complete Human Protein Atlas data in JSON format, version 25.0" ; schema1:url . kgr:hpa.proteinatlas.tsv a schema1:Product ; rdfs:label "HPA Complete Data (TSV)" ; dcterms:description "Complete Human Protein Atlas data in TSV format, version 25.0" ; schema1:url . kgr:hpa.proteinatlas.xml a schema1:Product ; rdfs:label "HPA Complete Data (XML)" ; dcterms:description "Complete Human Protein Atlas data in XML format, version 25.0 with comprehensive protein expression and annotation data" ; schema1:url . kgr:hpa.rna_celline a schema1:Product ; rdfs:label "HPA RNA Cell Line Expression Data" ; dcterms:description "Cell line atlas RNA expression data summarized per gene across 1,206 human cell lines and grouped cancer cell line classes" ; schema1:url . kgr:hpa.rna_immune_cell a schema1:Product ; rdfs:label "HPA Immune Cell RNA Data" ; dcterms:description "Immune cell atlas transcript expression data summarized per gene across 18 immune cell types and total PBMC, with linked sample-level HPA datasets" ; schema1:url . kgr:hpa.rna_single_cell a schema1:Product ; rdfs:label "HPA Single Cell RNA Expression Data" ; dcterms:description "Single Cell Type atlas data covering aggregated cell type comparisons, tissue datasets, cell type groups, and cluster-level scRNA-seq summaries" ; schema1:url . kgr:hpa.rna_tissue a schema1:Product ; rdfs:label "HPA RNA Tissue Expression Data" ; dcterms:description "Tissue atlas transcript expression data for human tissues, including HPA and consensus RNA measurements summarized per gene" ; schema1:url . kgr:hpa.subcellular_location a schema1:Product ; rdfs:label "HPA Subcellular Location Data" ; dcterms:description "Subcellular atlas localization data for proteins in immunofluorescently stained cells, including enhanced, supported, approved, uncertain, and GO cellular component annotations" ; schema1:url . kgr:hpap.pancdb a schema1:GraphicalInterface ; rdfs:label "HPAP PANC-DB" ; dcterms:description "PANC-DB data portal for browsing and downloading HPAP donor-derived pancreas and islet multi-omic datasets." ; schema1:url . kgr:hpidb.portal a schema1:GraphicalInterface ; rdfs:label "HPIDB Web Portal" ; dcterms:description "Web interface for searching HPIDB by sequence, keyword, and homologous host-pathogen protein interaction." ; schema1:url . kgr:hprd.genprot.viewer a schema1:GraphicalInterface ; rdfs:label "GenProt Viewer" ; dcterms:description "GenProt Viewer for integrated genomic, transcriptomic and proteomic view of the human genome" ; schema1:url . kgr:hprd.phosphomotif.finder a schema1:GraphicalInterface ; rdfs:label "HPRD PhosphoMotif Finder" ; dcterms:description "PhosphoMotif Finder tool for identifying kinase/phosphatase substrate and binding motifs" ; schema1:url . kgr:hprd.ppi.data a schema1:Product ; rdfs:label "HPRD Protein-Protein Interactions" ; dcterms:description "HPRD protein-protein interaction data in PSI-MITAB format, now archived and available through iRefIndex" ; schema1:url . kgr:hprd.tsv.download a schema1:DocumentationProduct ; rdfs:label "HPRD Tab-Delimited Data Download" ; dcterms:description "HPRD data in tab-delimited format for programmatic access" ; schema1:url . kgr:hprd.xml.download a schema1:DocumentationProduct ; rdfs:label "HPRD XML Data Download" ; dcterms:description "HPRD data in XML format for programmatic access" ; schema1:url . kgr:hra.api a schema1:ProgrammingInterface ; rdfs:label "HRA API" ; dcterms:description "Production HRA API for programmatic access to Common Coordinate Framework data, schemas, spatial relationships, and HRA services" ; schema1:url . kgr:hra.api-spec a schema1:DocumentationProduct ; rdfs:label "HRA API OpenAPI Specification" ; dcterms:description "OpenAPI specification for the production Human Reference Atlas API" ; schema1:url . kgr:hra.portal a schema1:GraphicalInterface ; rdfs:label "Human Reference Atlas Portal" ; dcterms:description "Web portal for exploring and visualizing the Human Reference Atlas" ; schema1:url . kgr:hravs.graph.json a schema1:DataModelProduct ; rdfs:label "HRAVS graph data, JSON-LD format" ; dcterms:description "The graph representation of the HRAVS (HuBMAP Research Attributes) value set dataset, latest version, JSON-LD format." ; schema1:url . kgr:hravs.graph.ttl a schema1:DataModelProduct ; rdfs:label "HRAVS graph data, Turtle format" ; dcterms:description "The graph representation of the HRAVS (HuBMAP Research Attributes) value set dataset, latest version, Turtle format." ; schema1:url . kgr:hravs.kg-bioportal a schema1:GraphProduct ; rdfs:label "HRAVS KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of HuBMAP Research Attributes Value Set (HRAVS), produced by KG-Bioportal from the BioPortal submission. The archive contains HRAVS_nodes.tsv and HRAVS_edges.tsv." ; schema1:url . kgr:hsapdv.kg-bioportal a schema1:GraphProduct ; rdfs:label "HSAPDV KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Human Developmental Stages Ontology (HSAPDV), produced by KG-Bioportal from the BioPortal submission. The archive contains HSAPDV_nodes.tsv and HSAPDV_edges.tsv." ; schema1:url . kgr:hsapdv.obo a schema1:OntologyProduct ; rdfs:label "hsapdv.obo" ; dcterms:description "Human Developmental Stages in OBO format" ; schema1:url . kgr:hsapdv.owl a schema1:OntologyProduct ; rdfs:label "hsapdv.owl" ; dcterms:description "Human Developmental Stages in OWL format" ; schema1:url . kgr:hso.kg-bioportal a schema1:GraphProduct ; rdfs:label "HSO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Health Surveillance Ontology (HSO), produced by KG-Bioportal from the BioPortal submission. The archive contains HSO_nodes.tsv and HSO_edges.tsv." ; schema1:url . kgr:hso.owl a schema1:OntologyProduct ; rdfs:label "hso.owl" ; dcterms:description "Health Surveillance Ontology in OWL format" ; schema1:url . kgr:htn.kg-bioportal a schema1:GraphProduct ; rdfs:label "HTN KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Hypertension Ontology (HTN), produced by KG-Bioportal from the BioPortal submission. The archive contains HTN_nodes.tsv and HTN_edges.tsv." ; schema1:url . kgr:htn.owl a schema1:OntologyProduct ; rdfs:label "HTN" ; dcterms:description "HTN" ; schema1:url . kgr:hubmap.antibody_validation_reports a schema1:Product ; rdfs:label "Antibody Validation Reports" ; dcterms:description "Antibody validation reports for multiplex imaging assays" ; schema1:url . kgr:hubmap.api a schema1:ProgrammingInterface ; rdfs:label "HuBMAP APIs" ; dcterms:description "HuBMAP API documentation for RESTful web services that support data ingest, entity metadata, search, ontology/UBKG access, and provenance queries." ; schema1:url . kgr:hubmap.azimuth a schema1:GraphicalInterface ; rdfs:label "Azimuth" ; dcterms:description "Single-cell RNA-seq and ATAC-seq analysis using reference datasets" ; schema1:url . kgr:hubmap.data_ingest_portal a schema1:Product ; rdfs:label "Data Ingest Portal" ; dcterms:description "Data submission portal for registering and ingesting consortium data" ; schema1:url . kgr:hubmap.data_portal a schema1:Product ; rdfs:label "HuBMAP Data Portal" ; dcterms:description "HuBMAP Data Portal providing access to standardized single-cell and spatial tissue data from human donors" ; schema1:url . kgr:hubmap.fusion a schema1:GraphicalInterface ; rdfs:label "FUSION" ; dcterms:description "Functional Unit State Identification and Navigation with Whole Slide Imaging" ; schema1:url . kgr:hubmap.vitessce a schema1:GraphicalInterface ; rdfs:label "Vitessce" ; dcterms:description "Interactive data visualization tool for spatial and single-cell multimodal datasets" ; schema1:url . kgr:hubmap.workspaces a schema1:GraphicalInterface ; rdfs:label "HuBMAP Workspaces" ; dcterms:description "Interactive JupyterLab environments for analyzing HuBMAP data" ; schema1:url . kgr:human-proteome-map.download a schema1:Product ; rdfs:label "Human Proteome Map Data Download Request" ; dcterms:description "Request form for HPM data downloads. Academic users must declare non-commercial use and agree not to redistribute the data; commercial users must request a license." ; schema1:url . kgr:human-proteome-map.portal a schema1:GraphicalInterface ; rdfs:label "Human Proteome Map Portal" ; dcterms:description "HPM web portal for querying protein and peptide expression across adult and fetal tissues and hematopoietic cells." ; schema1:url . kgr:humannet.web a schema1:GraphicalInterface ; rdfs:label "HumanNet Web Interface" ; dcterms:description "HumanNet v3 web interface for selecting PI, FN, or XC human gene networks and running disease gene or disease annotation prediction workflows." ; schema1:url . kgr:huri.interactions a schema1:GraphProduct ; rdfs:label "HuRI Protein-Protein Interactions" ; dcterms:description "Human Reference Interactome (HuRI) binary protein-protein interaction data from Luck et al. 2020." ; schema1:url . kgr:huri.interactions.psi a schema1:GraphProduct ; rdfs:label "HuRI Protein-Protein Interactions PSI-MI" ; dcterms:description "Human Reference Interactome (HuRI) binary protein-protein interaction data in PSI-MI format from Luck et al. 2020." ; schema1:url . kgr:huri.literature_benchmark a schema1:GraphProduct ; rdfs:label "HuRI Literature Benchmark" ; dcterms:description "Literature-curated high-quality protein-protein interactions from comparable experimental approaches, provided as the HuRI Lit-BM benchmark." ; schema1:url . kgr:huri.portal a schema1:GraphicalInterface ; rdfs:label "HuRI Web Portal" ; dcterms:description "Web portal for searching and browsing human protein interactions" ; schema1:url . kgr:hydrologykg.sparql a schema1:ProgrammingInterface ; rdfs:label "SAWGraph Hydrology KG SPARQL" ; dcterms:description "SPARQL endpoint for SAWGraph Hydrology KG" ; schema1:url . kgr:hydrologykg.tpf a schema1:ProgrammingInterface ; rdfs:label "SAWGraph Hydrology KG TPF" ; dcterms:description "Triple Pattern Fragments endpoint for SAWGraph Hydrology KG" ; schema1:url . kgr:i-adopt.docs a schema1:DocumentationProduct ; rdfs:label "I-ADOPT Framework Ontology Documentation" ; dcterms:description "WIDOCO-generated HTML documentation of the I-ADOPT Framework ontology, with class and property descriptions, examples and a WebVOWL visualization." ; schema1:url . kgr:i-adopt.extended.ttl a schema1:OntologyProduct ; rdfs:label "I-ADOPT Framework Ontology Extended (Turtle)" ; dcterms:description "Extended version of the I-ADOPT Framework ontology in Turtle format, adding formal class definitions and logical restrictions." ; schema1:url . kgr:i-adopt.jsonld a schema1:OntologyProduct ; rdfs:label "I-ADOPT Framework Ontology (JSON-LD)" ; dcterms:description "I-ADOPT Framework ontology in JSON-LD format, as published at the w3id.org/iadopt/ont namespace." ; schema1:url . kgr:i-adopt.kg-bioportal a schema1:GraphProduct ; rdfs:label "I-ADOPT KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of I-ADOPT Framework Ontology (I-ADOPT), produced by KG-Bioportal from the BioPortal submission. The archive contains I-ADOPT_nodes.tsv and I-ADOPT_edges.tsv." ; schema1:url . kgr:i-adopt.owl a schema1:OntologyProduct ; rdfs:label "I-ADOPT Framework Ontology (OWL)" ; dcterms:description "I-ADOPT Framework ontology in OWL (RDF/XML) format, as published at the w3id.org/iadopt/ont namespace." ; schema1:url . kgr:i-adopt.recommendations a schema1:DocumentationProduct ; rdfs:label "I-ADOPT WG Outputs and Recommendations" ; dcterms:description "RDA-endorsed I-ADOPT WG Outputs and Recommendations document (2022), describing the I-ADOPT Framework, its components and usage guidance, released under CC BY 4.0." ; schema1:url . kgr:i-adopt.repo a schema1:ProcessProduct ; rdfs:label "I-ADOPT Ontology GitHub Repository" ; dcterms:description "GitHub repository holding the I-ADOPT ontology sources, archived versions, extension proposals and the scripts and WIDOCO configuration used to build the documentation." ; schema1:url . kgr:i-adopt.ttl a schema1:OntologyProduct ; rdfs:label "I-ADOPT Framework Ontology (Turtle)" ; dcterms:description "I-ADOPT Framework ontology in Turtle format, as published at the w3id.org/iadopt/ont namespace (version 1.1.0 when checked)." ; schema1:url . kgr:iana-mediatype.application.csv a schema1:Product ; rdfs:label "IANA Application Media Types (CSV)" ; dcterms:description "CSV of the 1807 registered `application/*` media types (name, template, reference), as of the 2026-09-24 registry update." ; schema1:url . kgr:iana-mediatype.audio.csv a schema1:Product ; rdfs:label "IANA Audio Media Types (CSV)" ; dcterms:description "CSV of the 165 registered `audio/*` media types (name, template, reference), as of the 2026-09-24 registry update." ; schema1:url . kgr:iana-mediatype.font.csv a schema1:Product ; rdfs:label "IANA Font Media Types (CSV)" ; dcterms:description "CSV of the 6 registered `font/*` media types (name, template, reference), as of the 2026-09-24 registry update." ; schema1:url . kgr:iana-mediatype.haptics.csv a schema1:Product ; rdfs:label "IANA Haptics Media Types (CSV)" ; dcterms:description "CSV of the 3 registered `haptics/*` media types (name, template, reference), as of the 2026-09-24 registry update." ; schema1:url . kgr:iana-mediatype.image.csv a schema1:Product ; rdfs:label "IANA Image Media Types (CSV)" ; dcterms:description "CSV of the 88 registered `image/*` media types (name, template, reference), as of the 2026-09-24 registry update." ; schema1:url . kgr:iana-mediatype.message.csv a schema1:Product ; rdfs:label "IANA Message Media Types (CSV)" ; dcterms:description "CSV of the 27 registered `message/*` media types (name, template, reference), as of the 2026-09-24 registry update." ; schema1:url . kgr:iana-mediatype.model.csv a schema1:Product ; rdfs:label "IANA Model Media Types (CSV)" ; dcterms:description "CSV of the 44 registered `model/*` media types (name, template, reference), as of the 2026-09-24 registry update." ; schema1:url . kgr:iana-mediatype.multipart.csv a schema1:Product ; rdfs:label "IANA Multipart Media Types (CSV)" ; dcterms:description "CSV of the 17 registered `multipart/*` media types (name, template, reference), as of the 2026-09-24 registry update." ; schema1:url . kgr:iana-mediatype.portal a schema1:GraphicalInterface ; rdfs:label "IANA Media Types Registry (HTML)" ; dcterms:description "Web page listing every registered media type by top-level type, with links to each registration template and its defining specification." ; schema1:url . kgr:iana-mediatype.text.csv a schema1:Product ; rdfs:label "IANA Text Media Types (CSV)" ; dcterms:description "CSV of the 107 registered `text/*` media types (name, template, reference), as of the 2026-09-24 registry update." ; schema1:url . kgr:iana-mediatype.txt a schema1:Product ; rdfs:label "IANA Media Types Registry (Text)" ; dcterms:description "Full media types registry as a plain text rendering." ; schema1:url . kgr:iana-mediatype.video.csv a schema1:Product ; rdfs:label "IANA Video Media Types (CSV)" ; dcterms:description "CSV of the 97 registered `video/*` media types (name, template, reference), as of the 2026-09-24 registry update." ; schema1:url . kgr:iana-mediatype.xml a schema1:Product ; rdfs:label "IANA Media Types Registry (XML)" ; dcterms:description "Full media types registry in IANA's registry XML format, with all top-level types, templates and references." ; schema1:url . kgr:iao.d-acts.owl a schema1:OntologyProduct ; rdfs:label "ontology of document acts" ; dcterms:description "An ontology based on a theory of document acts describing what people can do with documents" ; schema1:url . kgr:iao.kg-bioportal a schema1:GraphProduct ; rdfs:label "IAO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Information Artifact Ontology (IAO), produced by KG-Bioportal from the BioPortal submission. The archive contains IAO_nodes.tsv and IAO_edges.tsv." ; schema1:url . kgr:iao.ontology-metadata.owl a schema1:OntologyProduct ; rdfs:label "IAO ontology metadata" ; dcterms:description "IAO ontology metadata" ; schema1:url . kgr:iao.owl a schema1:OntologyProduct ; rdfs:label "iao.owl" ; dcterms:description "Information Artifact Ontology in OWL format" ; schema1:url . kgr:icd10.browser a schema1:GraphicalInterface ; rdfs:label "ICD-10 Browser" ; dcterms:description "Web-based browser for exploring the ICD-10 classification hierarchy and codes" ; schema1:url . kgr:icd10.downloads a schema1:Product ; rdfs:label "ICD-10 Downloads" ; dcterms:description "Official ICD-10 classification files and documentation available for download" ; schema1:url . kgr:icd10.training a schema1:DocumentationProduct ; rdfs:label "ICD-10 Training" ; dcterms:description "Training materials and courses for learning ICD-10 coding and classification" ; schema1:url . kgr:icd10cm.tool a schema1:GraphicalInterface ; rdfs:label "ICD-10-CM Browser Tool" ; dcterms:description "Interactive web-based search tool for ICD-10-CM codes" ; schema1:url . kgr:icd11.api a schema1:ProgrammingInterface ; rdfs:label "ICD API" ; dcterms:description "WHO ICD API documentation and key-management portal for programmatic access to ICD classifications." ; schema1:url . kgr:icd11.browser a schema1:GraphicalInterface ; rdfs:label "ICD-11 Browser" ; dcterms:description "Official ICD-11 browser for the latest released mortality and morbidity classification." ; schema1:url . kgr:ice.data a schema1:Product ; rdfs:label "ICE Data" ; dcterms:description "The ICE data downloads and query interface, providing access to curated chemical data, in vitro assay data, and reference toxicity datasets, together with dataset descriptions and computational tools/workflows for chemical safety evaluation." ; schema1:url . kgr:iceo.owl a schema1:OntologyProduct ; rdfs:label "iceo.owl" ; dcterms:description "Integrative and Conjugative Element Ontology in OWL format" ; schema1:url . kgr:icgc.downloads a schema1:Product ; rdfs:label "ICGC 25K Data Downloads" ; dcterms:description "Controlled-access cancer genomics data downloads, including the ICGC 25K release and PCAWG data, obtained through the ICGC DACO application process and Score download client." ; schema1:url . kgr:icgc.platform a schema1:GraphicalInterface ; rdfs:label "ICGC ARGO Data Platform" ; dcterms:description "ICGC ARGO data platform for browsing, querying, and accessing uniformly analyzed cancer genomics and clinical data aligned to GRCh38." ; schema1:url . kgr:ickg.code a schema1:ProcessProduct ; rdfs:label "ICKG code repository" ; dcterms:description "Source code and models used for constructing and using Immune Cell Knowledge Graphs." ; schema1:url . kgr:ickg.portal a schema1:GraphicalInterface ; rdfs:label "Immune Cell Knowledge Graph portal" ; dcterms:description "Web application for ICKG-based immune cell type-specific gene set annotation and pathway relationship analysis." ; schema1:url . kgr:ico.kg-bioportal a schema1:GraphProduct ; rdfs:label "ICO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Informed Consent Ontology (ICO), produced by KG-Bioportal from the BioPortal submission. The archive contains ICO_nodes.tsv and ICO_edges.tsv." ; schema1:url . kgr:ico.owl a schema1:OntologyProduct ; rdfs:label "ico.owl" ; dcterms:description "Informed Consent Ontology in OWL format" ; schema1:url . kgr:iconclass.portal a schema1:GraphicalInterface ; rdfs:label "ICONCLASS Browser" ; dcterms:description "Official ICONCLASS browser for searching and navigating the image-subject classification system and related resources." ; schema1:url . kgr:identifiers-org.code a schema1:ProcessProduct ; rdfs:label "Identifiers.org Source Code" ; dcterms:description "GitHub organization holding the source code for the Identifiers.org resolver, registry, web front ends, Java client library and SPARQL service." ; schema1:url . kgr:identifiers-org.dataset a schema1:Product ; rdfs:label "Identifiers.org Resolver Dataset" ; dcterms:description "Full export of the Identifiers.org registry as a single JSON document, with every namespace (prefix, MIRIAM id, name, description, local identifier pattern) and its provider resources and URL patterns." ; schema1:url . kgr:identifiers-org.docs a schema1:DocumentationProduct ; rdfs:label "Identifiers.org Documentation" ; dcterms:description "Identifiers.org documentation, covering the identification scheme, resolving mechanisms, REST APIs (with Swagger UI), SPARQL service, terms of use and FAQ." ; schema1:url . kgr:identifiers-org.ontology a schema1:OntologyProduct ; rdfs:label "Identifiers.org Registry Ontology" ; dcterms:description "Ontology of the terms Identifiers.org created for registry attributes not covered by VoID and DCAT, kept with the Ontop mappings used by the SPARQL endpoint." ; schema1:url . kgr:identifiers-org.registry a schema1:GraphicalInterface ; rdfs:label "Identifiers.org Registry Web Interface" ; dcterms:description "Web interface for browsing and searching the Identifiers.org registry of namespaces and providers, and for submitting prefix and resource registration requests." ; schema1:url . kgr:identifiers-org.registry-api a schema1:ProgrammingInterface ; rdfs:label "Identifiers.org Registry API" ; dcterms:description "Identifiers.org Registry REST API (Spring Data REST, HAL+JSON) for querying namespaces, resources and institutions, plus the resolution dataset service. The API root requires authentication, but the restApi and resolutionApi paths are open." ; schema1:url . kgr:identifiers-org.resolver a schema1:ProgrammingInterface ; rdfs:label "Identifiers.org Resolver" ; dcterms:description "Identifiers.org resolver. Appending a compact identifier (prefix:accession) to https://identifiers.org/ redirects to the record at the recommended provider for that namespace." ; schema1:url . kgr:identifiers-org.resolver-api a schema1:ProgrammingInterface ; rdfs:label "Identifiers.org Resolution API" ; dcterms:description "Identifiers.org Resolution API, which returns the list of providers for a compact identifier as JSON, sorted by recommended usage, and converts provider URLs back into identifiers.org URIs." ; schema1:url . kgr:identifiers-org.sparql a schema1:ProgrammingInterface ; rdfs:label "Identifiers.org SPARQL Endpoint" ; dcterms:description "SPARQL endpoint over the Identifiers.org registry, generated with Ontop from R2RML mappings; the registry is modeled as a dcat:Catalog, namespaces as dcat:Dataset and resources as dcat:DataService." ; schema1:url . kgr:ido.kg-bioportal a schema1:GraphProduct ; rdfs:label "IDO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Infectious Disease Ontology (IDO), produced by KG-Bioportal from the BioPortal submission. The archive contains IDO_nodes.tsv and IDO_edges.tsv." ; schema1:url . kgr:ido.owl a schema1:OntologyProduct ; rdfs:label "ido.owl" ; dcterms:description "Infectious Disease Ontology in OWL format" ; schema1:url . kgr:idomal.kg-bioportal a schema1:GraphProduct ; rdfs:label "IDOMAL KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Malaria Ontology (IDOMAL), produced by KG-Bioportal from the BioPortal submission. The archive contains IDOMAL_nodes.tsv and IDOMAL_edges.tsv." ; schema1:url . kgr:idomal.obo a schema1:OntologyProduct ; rdfs:label "idomal.obo" ; dcterms:description "Malaria Ontology in OBO format" ; schema1:url . kgr:idomal.owl a schema1:OntologyProduct ; rdfs:label "idomal.owl" ; dcterms:description "Malaria Ontology in OWL format" ; schema1:url . kgr:iedison.api a schema1:ProgrammingInterface ; rdfs:label "iEdison API" ; dcterms:description "RESTful JSON web services for creating, updating and querying invention, patent and utilization reports. Access is limited to registered agencies and awardee organizations with certificate-based authentication." ; schema1:url . kgr:iedison.api-docs a schema1:DocumentationProduct ; rdfs:label "iEdison API Documentation" ; dcterms:description "Documentation for the current version of the iEdison invention, patent and utilization API." ; schema1:url . kgr:iedison.portal a schema1:GraphicalInterface ; rdfs:label "iEdison Web System" ; dcterms:description "Web system, requiring an account, in which funding recipients and federal agencies create and manage invention, patent and utilization reports." ; schema1:url . kgr:iev.obo a schema1:OntologyProduct ; rdfs:label "iev.obo" ; dcterms:description "Event (INOH pathway ontology) in OBO format" ; schema1:url . kgr:iev.owl a schema1:OntologyProduct ; rdfs:label "iev.owl" ; dcterms:description "Event (INOH pathway ontology) in OWL format" ; schema1:url . kgr:iid.human_annotated_ppis.readme a schema1:DocumentationProduct ; rdfs:label "IID Human Annotated PPIs Readme" ; dcterms:description "Readme workbook for the IID annotated human protein-protein interaction download." ; schema1:url . kgr:iid.mouse_annotated_ppis.readme a schema1:DocumentationProduct ; rdfs:label "IID Mouse Annotated PPIs Readme" ; dcterms:description "Readme workbook for the IID annotated mouse protein-protein interaction download." ; schema1:url . kgr:iid.portal a schema1:Product ; rdfs:label "IID Portal" ; dcterms:description "IID portal for querying and downloading detected, predicted, and orthology-based protein-protein interactions with context annotations." ; schema1:url . kgr:iidp.portal a schema1:GraphicalInterface ; rdfs:label "IIDP Portal" ; dcterms:description "Web portal for requesting human pancreatic islets and accessing associated islet characterization data distributed by the IIDP." ; schema1:url . kgr:imgt.genedb a schema1:GraphicalInterface ; rdfs:label "IMGT/GENE-DB" ; dcterms:description "IMGT gene database providing data on the genes and alleles of the immunoglobulins, T cell receptors, and major histocompatibility complex." ; schema1:url . kgr:imgt.site a schema1:GraphicalInterface ; rdfs:label "IMGT Website" ; dcterms:description "Web portal providing access to IMGT databases, tools, and reference directories for immunogenetics." ; schema1:url . kgr:immport.api a schema1:ProgrammingInterface ; rdfs:label "ImmPort Shared Data API" ; dcterms:description "The ImmPort Shared Data API, a REST API providing programmatic access to study manifests and file downloads. Requires a free ImmPort API key." ; schema1:url . kgr:immport.databrowser a schema1:GraphicalInterface ; rdfs:label "ImmPort Shared Data Browser" ; dcterms:description "The ImmPort Shared Data browser (Updated Data Browser) for searching and browsing shared studies and downloading data as single files, download-cart ZIP archives, or complete study (ALL_DATA) packages." ; schema1:url . kgr:immport.download-client a schema1:Product ; rdfs:label "ImmPort Download Client" ; dcterms:description "The ImmPort Download Client, a cross-platform (Linux, macOS, Windows) command-line tool that batch-downloads files from a manifest using GA4GH DRS standard transfer methods. Requires a free ImmPort API key." ; schema1:url . kgr:immport.drs a schema1:ProgrammingInterface ; rdfs:label "ImmPort GA4GH DRS API" ; dcterms:description "The ImmPort GA4GH Data Repository Service (DRS) API, which resolves logical file identifiers to physical download URLs (S3 signed URLs or streaming URLs). Requires a free ImmPort API key." ; schema1:url . kgr:immport.portal a schema1:GraphicalInterface ; rdfs:label "ImmPort Portal" ; dcterms:description "Web portal for searching, browsing, and downloading immunology research datasets shared through ImmPort." ; schema1:url . kgr:imo-knowledge-graph.code_samples a schema1:Product ; rdfs:label "IMO Health API Integration Code Samples" ; dcterms:description "Public GitHub repositories from IMO Health containing implementation samples for integrating with IMO APIs, including Normalize-Samples, snowflake-normalize-integration, NLP-sample, and solution-accelerators. These are code examples rather than data products and carry no explicit license." ; schema1:url . kgr:imo-knowledge-graph.covid19_open_data a schema1:Product ; rdfs:label "IMO Open Source COVID-19 Terminology and Value Set Data Package" ; dcterms:description "Open source data package of IMO clinical terminology and related maps for COVID-19, covering problem, lab, and procedure concepts, released in 2020 under the Creative Commons Attribution 4.0 International Public License along with an integration best practice guide. This is the only openly licensed subset of IMO content identified." ; schema1:url . kgr:imo-knowledge-graph.crosswalks_api a schema1:ProgrammingInterface ; rdfs:label "IMO Health Crosswalks API" ; dcterms:description "Crosswalks API supporting creation, update, deletion, and search of mappings from multiple source codes to target codes within or across code systems, drawing on the cross-mappings maintained in the IMO Health Knowledge Graph." ; schema1:url . kgr:imo-knowledge-graph.developer_portal a schema1:DocumentationProduct ; rdfs:label "IMO Developer Portal" ; dcterms:description "IMO Developer Portal with the API catalog, MCP server documentation, authentication guidance, and reference documentation for the Knowledge Graph and related services." ; schema1:url . kgr:imo-knowledge-graph.documentation a schema1:DocumentationProduct ; rdfs:label "IMO Health Knowledge Graph Product Page" ; dcterms:description "Product page describing the IMO Health Knowledge Graph, its clinical context layer, curation model, and use in grounding clinical AI." ; schema1:url . kgr:imo-knowledge-graph.graphql_api a schema1:ProgrammingInterface ; rdfs:label "IMO Health Knowledge Graph GraphQL API" ; dcterms:description "GraphQL API providing direct query access to the IMO Health Knowledge Graph, supporting retrieval of clinical concepts, concept relationships, hierarchies, and code mappings across industry-standard code sets. Launched for external developers in April 2026." ; schema1:url . kgr:imo-knowledge-graph.mcp_server a schema1:ProgrammingInterface ; rdfs:label "IMO Health MCP Server" ; dcterms:description "Model Context Protocol server that exposes the IMO Health Knowledge Graph and terminology services as tools for AI assistants and agents. Knowledge Graph Access tools include get_relationships, get_hierarchy, and cross_map; additional tools cover normalization (normalize_problem, normalize_procedure, normalize_code, batch_normalize) and search (search_problem, search_code, get_suggestions). Authentication uses a JWT bearer token." ; schema1:url . kgr:imo-knowledge-graph.terminology_server_api a schema1:ProgrammingInterface ; rdfs:label "IMO Health Terminology Server API" ; dcterms:description "Terminology Server API providing endpoints for ingesting, searching, and managing healthcare terminology datasets backed by the IMO Health Knowledge Graph, with licensing controls on the underlying content." ; schema1:url . kgr:imo-knowledge-graph.value_sets_api a schema1:ProgrammingInterface ; rdfs:label "IMO Precision Sets Value Sets GraphQL API" ; dcterms:description "GraphQL API for searching, creating, and retrieving IMO Precision Sets, pre-built clinical value sets assembled from the IMO Health Knowledge Graph that isolate codes across ICD-10-CM, ICD-9-CM, SNOMED CT, CPT, LOINC, NDC, and RxNorm for cohort identification, clinical decision support, and reporting. A companion Precision Sets InterOp API supports FHIR and generic responses." ; schema1:url . kgr:imodulondb.pymodulon a schema1:ProgrammingInterface ; rdfs:label "PyModulon Python Package" ; dcterms:description "Python package for characterization, plotting, and analysis of iModulons. Provides functions for threshold determination, transcriptional regulatory network (TRN) enrichment analysis, explained variance calculation, and generation of dashboard files for iModulonDB." ; schema1:url . kgr:impc.portal a schema1:GraphicalInterface ; rdfs:label "IMPC Portal" ; dcterms:description "Official IMPC portal for searching genes, alleles, phenotypes, disease associations, and phenotyping results." ; schema1:url . kgr:inchikey.docs a schema1:DocumentationProduct ; rdfs:label "InChI/InChIKey Documentation" ; dcterms:description "InChI Trust documentation and supporting material for the InChI/InChIKey identifier standard." ; schema1:url . kgr:inchikey.inchi_software a schema1:Product ; rdfs:label "InChI Software Repository" ; dcterms:description "Official IUPAC-InChI source code repository for the InChI algorithm and InChIKey generation software." ; schema1:url . kgr:inchikey.web_demo a schema1:GraphicalInterface ; rdfs:label "InChI Web Demo" ; dcterms:description "Official browser-based InChI web demo for drawing or uploading a molecule and generating InChI, InChIKey, and AuxInfo values." ; schema1:url . kgr:indra.api.cogex a schema1:ProgrammingInterface ; rdfs:label "INDRA CoGEx Query API" ; dcterms:description "REST API for INDRA CoGEx queries" ; schema1:url . kgr:indra.discovery a schema1:GraphicalInterface ; rdfs:label "INDRA Biomedical Discovery Engine" ; dcterms:description "Web interface for the INDRA Biomedical Discovery Engine" ; schema1:url . kgr:indra.python a schema1:ProcessProduct ; rdfs:label "INDRA Python Library" ; dcterms:description "Python library for automated model assembly from mechanistic knowledge" ; schema1:url . kgr:inhs a "Organization" ; rdfs:label "Illinois Natural History Survey" . kgr:innatedb.downloads a schema1:Product ; rdfs:label "InnateDB Data Downloads" ; dcterms:description "Downloadable data files for interactions, pathways, and annotations" ; schema1:url . kgr:innatedb.portal a schema1:GraphicalInterface ; rdfs:label "InnateDB Web Portal" ; dcterms:description "Web interface for searching and analyzing innate immunity genes, proteins, interactions, and pathways" ; schema1:url . kgr:ino.kg-bioportal a schema1:GraphProduct ; rdfs:label "INO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Interaction Network Ontology (INO), produced by KG-Bioportal from the BioPortal submission. The archive contains INO_nodes.tsv and INO_edges.tsv." ; schema1:url . kgr:ino.owl a schema1:OntologyProduct ; rdfs:label "ino.owl" ; dcterms:description "Interaction Network Ontology in OWL format" ; schema1:url . kgr:inoh.pathways a schema1:Product ; rdfs:label "INOH Pathway Data" ; dcterms:description "Manually curated signal transduction and metabolic pathway data, distributed in INOH XML and BioPAX (Level 2 and Level 3) formats." ; schema1:url . kgr:insight.portal a schema1:GraphicalInterface ; rdfs:label "INSIGHT Project Portal" ; dcterms:description "INSIGHT project web portal for project updates, consortium information, and dissemination materials." ; schema1:url . kgr:institute-of-biophysics-chinese-academy-of-science a "Organization" ; rdfs:label "Institute of Biophysics, Chinese Academy of Sciences" . kgr:intact.docs.user-guide a schema1:DocumentationProduct ; rdfs:label "IntAct User Guide" ; dcterms:description "User guide and documentation for search, exports, data sources, and submission" ; schema1:url . kgr:intact.portal a schema1:GraphicalInterface ; rdfs:label "IntAct Portal" ; dcterms:description "Web portal for browsing, searching, and accessing IntAct molecular interaction data" ; schema1:url . kgr:intermine.documentation a schema1:DocumentationProduct ; rdfs:label "InterMine Documentation" ; dcterms:description "InterMine server documentation describing the biological data warehouse system, BlueGenes interface, data integration model, and web-service API." ; schema1:url . kgr:intermine.registry a schema1:GraphicalInterface ; rdfs:label "InterMine Registry" ; dcterms:description "Public InterMine Registry listing deployed InterMine instances across organisms and life-science research areas." ; schema1:url . kgr:intermine.registry-api a schema1:ProgrammingInterface ; rdfs:label "InterMine Registry API" ; dcterms:description "InterMine Registry Swagger API for programmatically discovering public InterMine instances." ; schema1:url . kgr:intermine.software a schema1:Product ; rdfs:label "InterMine Software" ; dcterms:description "Open-source InterMine codebase for building biological data warehouses and deploying InterMine instances." ; schema1:url . kgr:interpro.api a schema1:ProgrammingInterface ; rdfs:label "InterPro API" ; dcterms:description "RESTful API for programmatic access to InterPro data" ; schema1:url . kgr:interpro.entry_list a schema1:DataModelProduct ; rdfs:label "InterPro Entry List" ; dcterms:description "Complete list of InterPro entries with their types and short names" ; schema1:url . kgr:interpro.interproscan a schema1:ProcessProduct ; rdfs:label "InterProScan" ; dcterms:description "Software package for scanning protein sequences against InterPro's signatures" ; schema1:url . kgr:interpro.match_complete a schema1:MappingProduct ; rdfs:label "InterPro Match Complete" ; dcterms:description "Complete set of matches between protein sequences and InterPro entries/signatures" ; schema1:url . kgr:interpro.parent_child_tree a schema1:DataModelProduct ; rdfs:label "Parent-Child Tree" ; dcterms:description "Hierarchical relationships between InterPro entries" ; schema1:url . kgr:interpro.protein2ipr a schema1:MappingProduct ; rdfs:label "Protein to InterPro Mappings" ; dcterms:description "Mappings of protein sequences to InterPro entries in a tab-delimited format" ; schema1:url . kgr:interpro.uniparc_match a schema1:MappingProduct ; rdfs:label "UniParc Match" ; dcterms:description "InterPro matches for UniParc protein sequences" ; schema1:url . kgr:interpro.web a schema1:GraphicalInterface ; rdfs:label "InterPro Web Interface" ; dcterms:description "Web interface for browsing and searching the InterPro database" ; schema1:url . kgr:interpro.xml a schema1:DataModelProduct ; rdfs:label "InterPro XML" ; dcterms:description "Complete InterPro database in XML format containing entries, member database signatures, GO terms, and relationships" ; schema1:url . kgr:inxight-drugs.api a schema1:ProgrammingInterface ; rdfs:label "Inxight: Drugs REST API" ; dcterms:description "Public REST API providing programmatic access to curated drug substances, approval and development status, mechanisms, targets, and related metadata in the Inxight Drugs database." ; schema1:url . kgr:inxight-drugs.portal a schema1:GraphicalInterface ; rdfs:label "Inxight: Drugs Web Portal" ; dcterms:description "Web portal interface for browsing and searching the curated Inxight Drugs database of drug substances, including approval status, mechanisms, and targets." ; schema1:url . kgr:iproclass.pir-docs a schema1:DocumentationProduct ; rdfs:label "PIR Documentation" ; dcterms:description "Protein Information Resource site with parent documentation and context for iProClass." ; schema1:url . kgr:iproclass.portal a schema1:GraphicalInterface ; rdfs:label "iProClass Portal" ; dcterms:description "Historical iProClass web interface for integrated protein annotation lookup." ; schema1:url . kgr:iprox.api a schema1:ProgrammingInterface ; rdfs:label "iProX Web Service API" ; dcterms:description "iProX RESTful web services (JSONP) that list the data files of a project, or the projects and project XML files released on a given day, month or year. Bulk file download is then done with Aspera (ascp) against download.iprox.org using an iProX account." ; schema1:url . kgr:iprox.data-license a schema1:DocumentationProduct ; rdfs:label "iProX Data Use Agreement" ; dcterms:description "iProX Data Use Agreement, stating the CC0 and CC BY 4.0 terms for deposited datasets and the terms of use of the site." ; schema1:url . kgr:iprox.portal a schema1:GraphicalInterface ; rdfs:label "iProX Web Portal" ; dcterms:description "iProX web portal for submitting, searching and downloading proteomics datasets." ; schema1:url . kgr:iprox.projects a schema1:GraphicalInterface ; rdfs:label "iProX Project Browser" ; dcterms:description "Browser for public iProX projects, with project metadata, sample and instrument descriptions and file listings for each IPX accession." ; schema1:url . kgr:iptmnet.api a schema1:ProgrammingInterface ; rdfs:label "iPTMnet REST API" ; dcterms:description "RESTful API for retrieving iPTMnet PTM data, with Swagger documentation and companion R/Python client packages." ; schema1:url . kgr:iptmnet.download.readme a schema1:DocumentationProduct ; rdfs:label "iPTMnet Download README" ; dcterms:description "README for the current iPTMnet downloadable PTM, score, and protein tables." ; schema1:url . kgr:iptmnet.portal a schema1:GraphicalInterface ; rdfs:label "iPTMnet Web Portal" ; dcterms:description "iPTMnet web portal for searching PTM proteins, enzymes, substrates, PTM sites, PTM-dependent interactions, literature evidence, and cross-species PTM conservation." ; schema1:url . kgr:iptmnet.python_client a schema1:ProgrammingInterface ; rdfs:label "pyiPTMnet" ; dcterms:description "Python client documentation for accessing the iPTMnet REST API." ; schema1:url . kgr:iptmnet.r_client a schema1:ProgrammingInterface ; rdfs:label "iPTMnetR" ; dcterms:description "R client documentation for accessing the iPTMnet REST API." ; schema1:url . kgr:iptmnet.score a schema1:Product ; rdfs:label "iPTMnet Score Table" ; dcterms:description "Current iPTMnet confidence score table for PTM site records." ; schema1:url . kgr:irefindex.irefr a schema1:Product ; rdfs:label "iRefR Package" ; dcterms:description "R package for accessing and manipulating iRefIndex data" . kgr:irefindex.irefscape a schema1:Product ; rdfs:label "iRefScape" ; dcterms:description "Cytoscape plugin for visualization and data mining of iRefIndex protein interaction data" . kgr:irefindex.irefweb a schema1:GraphicalInterface ; rdfs:label "iRefWeb" ; dcterms:description "Web interface for navigating the global protein-protein interaction landscape" . kgr:isrctn.api a schema1:ProgrammingInterface ; rdfs:label "ISRCTN XML API" ; dcterms:description "Public, unauthenticated XML API for retrieving single trials (/api/trial//format/) or querying multiple trials (/api/query/format/?q=&limit=) with keyword and field constraints. Output formats include the ISRCTN default format and the WHO ICTRP trial format." ; schema1:url . kgr:isrctn.api-docs a schema1:DocumentationProduct ; rdfs:label "ISRCTN API Documentation" ; dcterms:description "API documentation (PDF, prepared by 67 Bricks for Springer Nature) describing the ISRCTN API endpoints, query constraints and output formats." ; schema1:url . kgr:isrctn.definitions a schema1:DocumentationProduct ; rdfs:label "ISRCTN Field Definitions" ; dcterms:description "Definitions of the fields in ISRCTN study records and the registration application form." ; schema1:url . kgr:isrctn.portal a schema1:GraphicalInterface ; rdfs:label "ISRCTN Search" ; dcterms:description "Web portal for searching, browsing and viewing ISRCTN study records, with basic and advanced search by condition, intervention, funder, recruitment country and other fields, plus the Transparency Tracker view of results reporting." ; schema1:url . kgr:itis.api a schema1:ProgrammingInterface ; rdfs:label "ITIS REST Services" ; dcterms:description "REST JSON services providing programmatic access to taxonomic records, synonyms, hierarchy, and search utilities" ; schema1:url . kgr:itis.mysql_tables a schema1:Product ; rdfs:label "ITIS MySQL Tables Download" ; dcterms:description "Full ITIS data set for MySQL by-table bulk loading." ; schema1:url . kgr:itis.portal a schema1:GraphicalInterface ; rdfs:label "ITIS Web Portal" ; dcterms:description "Web portal for browsing taxonomic records, hierarchical classification, name sources, and reports" ; schema1:url . kgr:itis.sqlite a schema1:Product ; rdfs:label "ITIS SQLite Download" ; dcterms:description "Full ITIS data set packaged as a SQLite database download." ; schema1:url . kgr:iubmb a "Organization" ; rdfs:label "International Union of Biochemistry and Molecular Biology" . kgr:iucn-red-list.api a schema1:ProgrammingInterface ; rdfs:label "IUCN Red List API" ; dcterms:description "IUCN Red List API providing programmatic access to species assessment data, conservation status categories, and related metadata." ; schema1:url . kgr:iucn-red-list.portal a schema1:GraphicalInterface ; rdfs:label "IUCN Red List Web Portal" ; dcterms:description "Web portal for searching and browsing IUCN Red List species assessments, including extinction risk category, population trend, threats, habitat, and range information." ; schema1:url . kgr:jaspar.api a schema1:ProgrammingInterface ; rdfs:label "JASPAR RESTful API" ; dcterms:description "RESTful API for programmatic retrieval of JASPAR transcription factor binding profiles and associated metadata, returning individual matrices in formats such as JASPAR, TRANSFAC, MEME, PFM, and YAML." ; schema1:url . kgr:jaspar.docs a schema1:DocumentationProduct ; rdfs:label "JASPAR Source Code Repository" ; dcterms:description "Source code for the JASPAR web portal and REST API." ; schema1:url . kgr:jaspar.matrices a schema1:Product ; rdfs:label "JASPAR Binding Profile Matrices" ; dcterms:description "Bulk downloads of the curated, non-redundant transcription factor binding profiles (position frequency matrices) for all JASPAR collections, available in JASPAR, TRANSFAC, MEME, PFM, and other standard matrix formats." ; schema1:url . kgr:jaspar.web a schema1:GraphicalInterface ; rdfs:label "JASPAR Web Interface" ; dcterms:description "Web interface for searching, browsing, and visualizing all JASPAR transcription factor binding profiles and their metadata." ; schema1:url . kgr:jpost.database a schema1:GraphicalInterface ; rdfs:label "jPOST Database (jPOSTdb)" ; dcterms:description "jPOSTdb, the jPOST database of public proteome datasets reanalyzed under unified criteria, with filtering (\"Globe\") and comparison (\"Slice\") views of peptides, proteins and modifications mapped to UniProt." ; schema1:url . kgr:jpost.help a schema1:DocumentationProduct ; rdfs:label "jPOST Help" ; dcterms:description "jPOST help pages covering jPOSTrepo submission, jPOSTdb use, the reanalysis workflow and COVID-19 data." ; schema1:url . kgr:jpost.portal a schema1:GraphicalInterface ; rdfs:label "jPOST Portal" ; dcterms:description "jPOST project portal with news, help, FAQ and links to the repository and database." ; schema1:url . kgr:jpost.psm-modification a schema1:Product ; rdfs:label "jPOSTdb PSM Peptide Modification Data" ; dcterms:description "jPOSTdb PSM peptide modification table from the NBDC LSDB Archive, with modification type, site and position for each PSM (about 17 MB, file dated 2021-07-29)." ; schema1:url . kgr:jpost.rdf-docs a schema1:DocumentationProduct ; rdfs:label "jPOST Database RDF Dataset Page" ; dcterms:description "RDF Portal dataset page for the jPOST database RDF, with dataset statistics, schema diagram and example SPARQL queries." ; schema1:url . kgr:jpost.repository a schema1:GraphicalInterface ; rdfs:label "jPOST Repository (jPOSTrepo)" ; dcterms:description "jPOSTrepo, the jPOST data repository for submitting, browsing and downloading raw and processed mass spectrometry datasets (JPST and PXD accessions)." ; schema1:url . kgr:jpost.sparql a schema1:ProgrammingInterface ; rdfs:label "jPOST Database RDF SPARQL Endpoint" ; dcterms:description "SPARQL endpoint of the RDF Portal (DBCLS) serving the jPOST database RDF (version 202509, about 578 million triples) with the jPOST ontology. The RDF Portal lists this dataset under CC BY 4.0." ; schema1:url . kgr:jws-online.api a schema1:ProgrammingInterface ; rdfs:label "JWS Online REST API" ; dcterms:description "REST API for listing and searching models and simulation experiments (by species or reaction ID), retrieving model and manuscript details as JSON, running time-course and steady-state analyses, and exporting or uploading models and simulations. Mostly usable without authentication." ; schema1:url . kgr:jws-online.docs a schema1:DocumentationProduct ; rdfs:label "JWS Online Documentation" ; dcterms:description "JWS Online 2.0 documentation covering model loading, upload, editing and building, the simulation environment, simulation experiments, the REST API, SED-ML support and the Docker image." ; schema1:url . kgr:jws-online.manuscripts a schema1:GraphicalInterface ; rdfs:label "JWS Online Manuscript Database" ; dcterms:description "Database of models submitted alongside manuscripts under review, curated by JWS Online on behalf of collaborating journals." ; schema1:url . kgr:jws-online.models a schema1:GraphicalInterface ; rdfs:label "JWS Online Model Database" ; dcterms:description "Web interface to browse the JWS Online database of curated kinetic models, filterable by organism, tissue, process and model type, with links to each model's detail page, schema and online simulator." ; schema1:url . kgr:jws-online.sbml a schema1:Product ; rdfs:label "JWS Online SBML Model Downloads" ; dcterms:description "Per-model downloads of curated JWS Online models in SBML (Level 3 Version 1), with Mathematica, JWS and PySCeS exports also offered from the model database. Files are retrieved one model at a time via /models//sbml/?download=1." ; schema1:url . kgr:jws-online.simulations a schema1:GraphicalInterface ; rdfs:label "JWS Online Simulation Database" ; dcterms:description "Database of curated simulation experiments (SED-ML) linked to JWS Online models, allowing one-click reproduction of figures from published papers, plus tools to build and upload simulations." ; schema1:url . kgr:kegg.annotation a schema1:ProcessProduct ; rdfs:label "KEGG Annotation" ; dcterms:description "Tools for KO (KEGG Orthology) assignment and validation" ; schema1:url . kgr:kegg.api a schema1:ProgrammingInterface ; rdfs:label "KEGG REST API" ; dcterms:description "REST-style Application Programming Interface to the KEGG database resource" ; schema1:url . kgr:kegg.blastkoala a schema1:ProcessProduct ; rdfs:label "BlastKOALA" ; dcterms:description "BLAST-based KO annotation and KEGG mapping tool" ; schema1:url . kgr:kegg.brite a schema1:DataModelProduct ; rdfs:label "KEGG BRITE" ; dcterms:description "BRITE hierarchies and tables for functional hierarchies of biological objects" ; schema1:url . kgr:kegg.compound a schema1:Product ; rdfs:label "KEGG COMPOUND" ; dcterms:description "Collection of small molecules and biopolymers" ; schema1:url . kgr:kegg.disease a schema1:Product ; rdfs:label "KEGG DISEASE" ; dcterms:description "Collection of human diseases" ; schema1:url . kgr:kegg.drug a schema1:Product ; rdfs:label "KEGG DRUG" ; dcterms:description "Collection of drugs" ; schema1:url . kgr:kegg.genes a schema1:Product ; rdfs:label "KEGG GENES" ; dcterms:description "Gene catalogs of completely sequenced genomes" ; schema1:url . kgr:kegg.genome a schema1:Product ; rdfs:label "KEGG GENOME" ; dcterms:description "Collection of organisms with complete genome sequences" ; schema1:url . kgr:kegg.glycan a schema1:Product ; rdfs:label "KEGG GLYCAN" ; dcterms:description "Collection of glycans" ; schema1:url . kgr:kegg.mapper a schema1:ProcessProduct ; rdfs:label "KEGG Mapper" ; dcterms:description "Collection of tools for mapping molecular datasets to KEGG pathway maps, BRITE hierarchies, and modules" ; schema1:url . kgr:kegg.medicus a schema1:GraphicalInterface ; rdfs:label "KEGG MEDICUS" ; dcterms:description "Web interface for integrated drug and disease information with a focus on drug interactions and health information" ; schema1:url . kgr:kegg.module a schema1:Product ; rdfs:label "KEGG MODULE" ; dcterms:description "KEGG modules representing tighter functional units within KEGG pathways" ; schema1:url . kgr:kegg.orthology a schema1:Product ; rdfs:label "KEGG ORTHOLOGY" ; dcterms:description "KO (KEGG Orthology) groups representing ortholog groups of genes" ; schema1:url . kgr:kegg.pathway a schema1:Product ; rdfs:label "KEGG PATHWAY" ; dcterms:description "KEGG pathway maps representing molecular interaction and reaction networks" ; schema1:url . kgr:kegg.pathway.kgml a schema1:DataModelProduct ; rdfs:label "KEGG Pathway KGML" ; dcterms:description "KEGG pathway maps in KGML (KEGG Markup Language) format, an XML representation of KEGG pathway maps" ; schema1:url . kgr:kegg.reaction a schema1:Product ; rdfs:label "KEGG REACTION" ; dcterms:description "Collection of biochemical reactions" ; schema1:url . kgr:kegg.syntax a schema1:ProcessProduct ; rdfs:label "KEGG Syntax" ; dcterms:description "Tools for analyzing conserved genes, gene sets, and gene order" ; schema1:url . kgr:kegg.web a schema1:GraphicalInterface ; rdfs:label "KEGG Web Interface" ; dcterms:description "Web interface for browsing and searching the KEGG database, including pathway maps, BRITE hierarchies, and other KEGG content" ; schema1:url . kgr:kegg.webapps a schema1:GraphicalInterface ; rdfs:label "KEGG Web Apps" ; dcterms:description "Interactive web applications for KEGG pathway viewing with coloring features and other visualization tools" ; schema1:url . kgr:kentucky-cancer-registry.cancer-rates a schema1:GraphicalInterface ; rdfs:label "Cancer-Rates.com Kentucky Statistics" ; dcterms:description "Cancer-Rates.com interactive interface providing population-based cancer incidence and mortality statistics for Kentucky derived from KCR data." ; schema1:url . kgr:kentucky-cancer-registry.research a schema1:GraphicalInterface ; rdfs:label "KCR Research Data Request Portal" ; dcterms:description "Researcher data-request and research resources portal describing how to request KCR cancer surveillance data for approved research projects." ; schema1:url . kgr:kg-bioportal.code a schema1:ProcessProduct ; rdfs:label "KG-Bioportal Transform Pipeline" ; dcterms:description "Python package and GitHub Actions workflow that download BioPortal ontologies and convert them to KGX with ROBOT and the KGX toolkit." ; schema1:url . kgr:kg-enp.graphdb a schema1:GraphicalInterface ; rdfs:label "ENPKG GraphDB" ; dcterms:description "Public GraphDB browser for exploring the Experimental Natural Products Knowledge Graph." ; schema1:url . kgr:kg-enp.portal a schema1:GraphicalInterface ; rdfs:label "ENP-KG Portal" ; dcterms:description "Landing page for the Experimental Natural Products Knowledge Graph with links to the public GraphDB instance, SPARQL interface, vocabulary documentation, and GitHub organization." ; schema1:url . kgr:kg-enp.sparql a schema1:ProgrammingInterface ; rdfs:label "ENPKG SPARQL Endpoint" ; dcterms:description "SPARQL research interface for querying the Experimental Natural Products Knowledge Graph." ; schema1:url . kgr:kg-enp.vocabulary a schema1:DocumentationProduct ; rdfs:label "ENPKG RDF Vocabulary" ; dcterms:description "ENPKG RDF vocabulary documentation describing classes and properties used in the Experimental Natural Products Knowledge Graph." ; schema1:url . kgr:kg-enp.workflow a schema1:ProcessProduct ; rdfs:label "ENPKG Full Workflow" ; dcterms:description "Full ENPKG workflow repository for generating experimental natural products knowledge graphs from metabolomics datasets." ; schema1:url . kgr:kg-fm.answer_references a schema1:Product ; rdfs:label "KG-FM Answer References" ; dcterms:description "Zipped answer-reference material for the KG-FM question-answering benchmark." ; schema1:url . kgr:kg-fm.demonstration_video a schema1:DocumentationProduct ; rdfs:label "KG-FM Demonstration Video" ; dcterms:description "Demonstration video for the KG-FM project." ; schema1:url . kgr:kg-fm.question_answer a schema1:Product ; rdfs:label "KG-FM Question and Answer Benchmark" ; dcterms:description "CSV file containing framework-material questions and reference answers used to evaluate KG-enhanced LLM question answering." ; schema1:url . kgr:kg-fm.workflow a schema1:ProcessProduct ; rdfs:label "KG-FM Construction and QA Code" ; dcterms:description "Python scripts for splitting abstract text, converting LLM-extracted JSON records into Neo4j Cypher imports, loading title metadata, and integrating KG-FM with LLM-based question answering." ; schema1:url . kgr:kg-jensenlab-diseases.docs a schema1:DocumentationProduct ; rdfs:label "JensenLab DISEASES Translator Plugin" ; dcterms:description "Translator plugin repository directory for the JensenLab DISEASES ingest, including parser code, metadata, and generated outputs." ; schema1:url . kgr:kg-monarch.associations.all a schema1:Product ; rdfs:label "All Associations" ; dcterms:description "All associations from the Monarch Knowledge Graph in TSV format" ; schema1:url . kgr:kg-monarch.associations.causal_gene_to_disease a schema1:Product ; rdfs:label "Causal Gene to Disease Associations" ; dcterms:description "Causal gene to disease associations" ; schema1:url . kgr:kg-monarch.associations.chemical_or_drug_to_disease a schema1:Product ; rdfs:label "Chemical/Drug/Treatment to Disease/Phenotypic Feature Associations" ; dcterms:description "Chemical or drug or treatment to disease or phenotypic feature associations" ; schema1:url . kgr:kg-monarch.associations.chemical_to_disease a schema1:Product ; rdfs:label "Chemical to Disease/Phenotypic Feature Associations" ; dcterms:description "Chemical to disease or phenotypic feature associations" ; schema1:url . kgr:kg-monarch.associations.chemical_to_pathway a schema1:Product ; rdfs:label "Chemical to Pathway Associations" ; dcterms:description "Chemical to pathway associations" ; schema1:url . kgr:kg-monarch.associations.correlated_gene_to_disease a schema1:Product ; rdfs:label "Correlated Gene to Disease Associations" ; dcterms:description "Correlated gene to disease associations" ; schema1:url . kgr:kg-monarch.associations.disease_to_inheritance a schema1:Product ; rdfs:label "Disease/Phenotypic Feature to Genetic Inheritance Associations" ; dcterms:description "Disease or phenotypic feature to genetic inheritance associations" ; schema1:url . kgr:kg-monarch.associations.disease_to_location a schema1:Product ; rdfs:label "Disease/Phenotypic Feature to Location Associations" ; dcterms:description "Disease or phenotypic feature to location associations" ; schema1:url . kgr:kg-monarch.associations.disease_to_phenotype a schema1:Product ; rdfs:label "Disease to Phenotypic Feature Associations" ; dcterms:description "Disease to phenotypic feature associations" ; schema1:url . kgr:kg-monarch.associations.gene_to_expression_site a schema1:Product ; rdfs:label "Gene to Expression Site Associations" ; dcterms:description "Gene to expression site associations" ; schema1:url . kgr:kg-monarch.associations.gene_to_gene_homology a schema1:Product ; rdfs:label "Gene to Gene Homology Associations" ; dcterms:description "Gene to gene homology associations" ; schema1:url . kgr:kg-monarch.associations.gene_to_pathway a schema1:Product ; rdfs:label "Gene to Pathway Associations" ; dcterms:description "Gene to pathway associations" ; schema1:url . kgr:kg-monarch.associations.gene_to_phenotype a schema1:Product ; rdfs:label "Gene to Phenotypic Feature Associations" ; dcterms:description "Gene to phenotypic feature associations" ; schema1:url . kgr:kg-monarch.associations.genotype_to_disease a schema1:Product ; rdfs:label "Genotype to Disease Associations" ; dcterms:description "Genotype to disease associations" ; schema1:url . kgr:kg-monarch.associations.genotype_to_gene a schema1:Product ; rdfs:label "Genotype to Gene Associations" ; dcterms:description "Genotype to gene associations" ; schema1:url . kgr:kg-monarch.associations.genotype_to_phenotype a schema1:Product ; rdfs:label "Genotype to Phenotypic Feature Associations" ; dcterms:description "Genotype to phenotypic feature associations" ; schema1:url . kgr:kg-monarch.associations.genotype_to_variant a schema1:Product ; rdfs:label "Genotype to Variant Associations" ; dcterms:description "Genotype to variant associations" ; schema1:url . kgr:kg-monarch.associations.macromolecular_machine_to_biological_process a schema1:Product ; rdfs:label "Macromolecular Machine to Biological Process Associations" ; dcterms:description "Macromolecular machine to biological process associations" ; schema1:url . kgr:kg-monarch.associations.macromolecular_machine_to_cellular_component a schema1:Product ; rdfs:label "Macromolecular Machine to Cellular Component Associations" ; dcterms:description "Macromolecular machine to cellular component associations" ; schema1:url . kgr:kg-monarch.associations.macromolecular_machine_to_molecular_activity a schema1:Product ; rdfs:label "Macromolecular Machine to Molecular Activity Associations" ; dcterms:description "Macromolecular machine to molecular activity associations" ; schema1:url . kgr:kg-monarch.associations.pairwise_gene_to_gene_interaction a schema1:Product ; rdfs:label "Pairwise Gene to Gene Interaction Associations" ; dcterms:description "Pairwise gene to gene interaction associations" ; schema1:url . kgr:kg-monarch.associations.variant_to_disease a schema1:Product ; rdfs:label "Variant to Disease Associations" ; dcterms:description "Variant to disease associations" ; schema1:url . kgr:kg-monarch.associations.variant_to_gene a schema1:Product ; rdfs:label "Variant to Gene Associations" ; dcterms:description "Variant to gene associations" ; schema1:url . kgr:kg-monarch.associations.variant_to_phenotype a schema1:Product ; rdfs:label "Variant to Phenotypic Feature Associations" ; dcterms:description "Variant to phenotypic feature associations" ; schema1:url . kgr:kg-monarch.solr a schema1:Product ; rdfs:label "Solr Data" ; dcterms:description "Solr index data for the Monarch Knowledge Graph search functionality" ; schema1:url . kgr:kg-predict.code a schema1:ProcessProduct ; rdfs:label "KG-Predict Code" ; dcterms:description "Python implementation of KG-Predict framework for graph embedding and drug repurposing prediction" ; schema1:url . kgr:kg-predict.raw_data a schema1:DocumentationProduct ; rdfs:label "GP-KG Raw Data Documentation" ; dcterms:description "Source data documentation for the GP-KG download" ; schema1:url . kgr:kg4sl.code a schema1:ProcessProduct ; rdfs:label "KG4SL Code" ; dcterms:description "Repository containing preprocessing, training, and evaluation code for KG4SL." ; schema1:url . kgr:kgcl.kg-bioportal a schema1:GraphProduct ; rdfs:label "KGCL KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Knowledge Graph Change Language (KGCL), produced by KG-Bioportal from the BioPortal submission. The archive contains KGCL_nodes.tsv and KGCL_edges.tsv." ; schema1:url . kgr:kgcl.model.jsonld a schema1:DataModelProduct ; rdfs:label "Knowledge Graph Change Language JSON-LD Context" ; dcterms:description "JSON-LD context for the Knowledge Graph Change Language model, enabling semantic interoperability for KGCL data." ; schema1:url . kgr:kgcl.model.owl a schema1:DataModelProduct ; rdfs:label "Knowledge Graph Change Language OWL release" ; dcterms:description "OWL release of Knowledge Graph Change Language, provides a formal semantic model for representing change operations in ontologies and knowledge graphs." ; schema1:url . kgr:kgcl.model.shacl a schema1:DataModelProduct ; rdfs:label "Knowledge Graph Change Language SHACL Shapes" ; dcterms:description "SHACL shapes for validating Knowledge Graph Change Language instances." ; schema1:url . kgr:kgcl.model.yaml a schema1:DataModelProduct ; rdfs:label "Knowledge Graph Change Language YAML Schema" ; dcterms:description "YAML schema representation of the Knowledge Graph Change Language model." ; schema1:url . kgr:kgcl.python a schema1:ProcessProduct ; rdfs:label "KGCL Python Implementation" ; dcterms:description "Python implementation of the Knowledge Graph Change Language standard, including a LinkML model and LARK grammar for parsing and generating KGCL statements." ; schema1:url . kgr:kidsfirst.cavatica a schema1:GraphicalInterface ; rdfs:label "CAVATICA Platform" ; dcterms:description "Cloud-based analysis platform for Kids First data, allowing researchers to analyze and integrate genomic and clinical data in a secure environment." ; schema1:url . kgr:kidsfirst.pedcbioportal a schema1:GraphicalInterface ; rdfs:label "PedcBioPortal" ; dcterms:description "Web-based tool for exploring and visualizing pediatric cancer genomic datasets, integrated with clinical data." ; schema1:url . kgr:kidsfirst.portal a schema1:GraphicalInterface ; rdfs:label "Kids First Data Resource Portal" ; dcterms:description "Centralized platform providing access to harmonized clinical and genomic data from childhood cancer and congenital disorder cohorts, supporting cohort discovery and analysis." ; schema1:url . kgr:kinace.code a schema1:ProcessProduct ; rdfs:label "KiNet Source Code" ; dcterms:description "GitHub repository containing the R/Shiny source code and data files for the KiNet web portal" ; schema1:url . kgr:kinace.github_archive a schema1:Product ; rdfs:label "KiNet GitHub Dataset Archive" ; dcterms:description "Zipped GitHub data archive for the KiNet/KinAce web portal and kinase-substrate interaction dataset" ; schema1:url . kgr:kinace.zenodo_archive a schema1:Product ; rdfs:label "KinAce Zenodo Archive" ; dcterms:description "Zenodo archive for the KinAce web portal and kinase-substrate interaction dataset" ; schema1:url . kgr:kinhub.kinases-list a schema1:Product ; rdfs:label "Human Protein Kinases List" ; dcterms:description "Comprehensive list of human protein kinases with unified naming scheme" ; schema1:url . kgr:kinhub.kinmap a schema1:GraphicalInterface ; rdfs:label "KinMap" ; dcterms:description "Interactive web-based tool for navigating and annotating the human kinome tree with biochemical, structural, and disease data" ; schema1:url . kgr:kinhub.portal a schema1:GraphicalInterface ; rdfs:label "KinHub Portal" ; dcterms:description "Main portal providing resources and tools for human protein kinases" ; schema1:url . kgr:kinomescan.portal a schema1:GraphicalInterface ; rdfs:label "KINOMEscan Data Portal" ; dcterms:description "Web interface providing searchable table of all small molecules profiled by KINOMEscan" ; schema1:url . kgr:kinomescan.spreadsheet a schema1:DocumentationProduct ; rdfs:label "KINOMEscan Datasets Spreadsheet" ; dcterms:description "Excel spreadsheet containing HMS LINCS KINOMEscan datasets with compound information and data links" ; schema1:url . kgr:kisao.owl a schema1:OntologyProduct ; rdfs:label "kisao.owl" ; dcterms:description "Kinetic Simulation Algorithm Ontology in OWL format" ; schema1:url . kgr:klocd.drug-repurposing a schema1:GraphicalInterface ; rdfs:label "KLOCD Drug Repurposing" ; dcterms:description "Drug repurposing tool that uses link prediction and reinforcement learning over OCKG to suggest drug candidates for diseases." ; schema1:url . kgr:klocd.ockg a schema1:GraphProduct ; rdfs:label "Organ-on-Chip Knowledge Graph (OCKG)" ; dcterms:description "Organ-on-Chip Knowledge Graph (OCKG) linking organ-on-chip models with diseases, genes, compounds and other biomedical entities. Version 1.0 has 76,540 nodes of 17 types and 2,315,561 relationships of 21 types. It is browsable through the KLOCD web interface and underlies its drug repurposing and question answering tools." ; schema1:url . kgr:klocd.qa-assistant a schema1:GraphicalInterface ; rdfs:label "KLOCD Intelligent Assistant" ; dcterms:description "Retrieval-augmented question answering assistant that combines OCKG data with large language models to answer biomedical questions in natural language." ; schema1:url . kgr:knowwheregraph.explorer a schema1:GraphicalInterface ; rdfs:label "KnowWhereGraph Knowledge Explorer" ; dcterms:description "Faceted search interface providing table and map-based views for browsing and discovering KnowWhereGraph data with automatic SPARQL query generation" ; schema1:url . kgr:knowwheregraph.ontology a schema1:DocumentationProduct ; rdfs:label "KnowWhereGraph Ontology Documentation" ; dcterms:description "Comprehensive ontology documentation and reference for the KnowWhereGraph ontology with 150 classes, 70 object properties, and 75 data properties" ; schema1:url . kgr:knowwheregraph.sparql a schema1:ProgrammingInterface ; rdfs:label "KnowWhereGraph SPARQL Endpoint" ; dcterms:description "SPARQL endpoint with GeoSPARQL support for querying KnowWhereGraph data and performing geospatial queries, served via the FRINK (Proto-OKN) platform" ; schema1:url . kgr:labeledin.publication a schema1:DocumentationProduct ; rdfs:label "LabeledIn Publication" ; dcterms:description "Publication describing the LabeledIn corpus construction workflow, including drug label selection, automatic disease recognition, and manual indication annotation." ; schema1:url . kgr:labo.kg-bioportal a schema1:GraphProduct ; rdfs:label "LABO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of clinical LABoratory Ontology (LABO), produced by KG-Bioportal from the BioPortal submission. The archive contains LABO_nodes.tsv and LABO_edges.tsv." ; schema1:url . kgr:labo.owl a schema1:OntologyProduct ; rdfs:label "labo.owl" ; dcterms:description "clinical LABoratory Ontology in OWL format" ; schema1:url . kgr:lepao.kg-bioportal a schema1:GraphProduct ; rdfs:label "LEPAO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Lepidoptera Anatomy Ontology (LEPAO), produced by KG-Bioportal from the BioPortal submission. The archive contains LEPAO_nodes.tsv and LEPAO_edges.tsv." ; schema1:url . kgr:lepao.obo a schema1:OntologyProduct ; rdfs:label "lepao.obo" ; dcterms:description "Lepidoptera Anatomy Ontology in OBO format" ; schema1:url . kgr:lepao.owl a schema1:OntologyProduct ; rdfs:label "lepao.owl" ; dcterms:description "Lepidoptera Anatomy Ontology in OWL format" ; schema1:url . kgr:lincs-l1000.clue a schema1:GraphicalInterface ; rdfs:label "CLUE Platform" ; dcterms:description "The CLUE platform provides interactive analysis tools and data access for the LINCS L1000 Connectivity Map dataset, including query tools, visualization, and APIs for programmatic access." ; schema1:url . kgr:lincs-l1000.cmap a schema1:GraphicalInterface ; rdfs:label "LINCS Connectivity Map (CMap)" ; dcterms:description "The Connectivity Map (CMap) database containing over 1.3 million L1000 gene expression profiles from chemical, genetic, and biologic perturbations. Includes web-based analysis tools for signature search and perturbagen class discovery." ; schema1:url . kgr:lincs-l1000.geo a schema1:Product ; rdfs:label "LINCS L1000 GEO Dataset" ; dcterms:description "LINCS L1000 data deposited in the Gene Expression Omnibus, including raw and processed gene expression data at multiple levels of preprocessing for all 1.3+ million profiles." ; schema1:url . kgr:lincs.api a schema1:ProgrammingInterface ; rdfs:label "LINCS API" ; dcterms:description "API for programmatic access to LINCS data and signatures." ; schema1:url . kgr:lincs.portal a schema1:GraphicalInterface ; rdfs:label "LINCS Data Portal 2.0" ; dcterms:description "Web interface that allows users to explore, analyze, and visualize LINCS signatures and datasets." ; schema1:url . kgr:lipidmaps.api a schema1:ProgrammingInterface ; rdfs:label "LIPID MAPS REST API" ; dcterms:description "REST API for programmatic access to LIPID MAPS databases, allowing lookup and retrieval of lipid records, structures, and annotations by identifier or other query parameters." ; schema1:url . kgr:lipidmaps.docs a schema1:DocumentationProduct ; rdfs:label "LIPID MAPS LMSD Documentation" ; dcterms:description "Documentation and overview pages for the LIPID MAPS Structure Database, describing its contents, annotations, classification system, and download formats." ; schema1:url . kgr:lipidmaps.gateway a schema1:GraphicalInterface ; rdfs:label "LIPID MAPS Lipidomics Gateway" ; dcterms:description "The LIPID MAPS Lipidomics Gateway web portal for browsing and searching the LMSD and other databases, exploring lipid classification and nomenclature, and accessing lipidomics tools." ; schema1:url . kgr:lipidmaps.lmsd a schema1:Product ; rdfs:label "LIPID MAPS Structure Database (LMSD)" ; dcterms:description "The LIPID MAPS Structure Database (LMSD), a curated relational database of biologically relevant lipids with structures, classification, nomenclature, masses, formulae, and cross-references. Distributed as a structure-data file (SDF)." ; schema1:url . kgr:lipro.kg-bioportal a schema1:GraphProduct ; rdfs:label "LIPRO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Lipid Ontology (LIPRO), produced by KG-Bioportal from the BioPortal submission. The archive contains LIPRO_nodes.tsv and LIPRO_edges.tsv." ; schema1:url . kgr:litvar.api_documentation a schema1:DocumentationProduct ; rdfs:label "LitVar API Documentation" ; dcterms:description "LitVar web documentation for the REST API, including endpoints for variant autocomplete, variant summaries, variant publications, sensors, and gene-level variant search" ; schema1:url . kgr:lmha.browser a schema1:GraphicalInterface ; rdfs:label "LungMAP Ontology Browser" ; dcterms:description "The LungMAP Ontology Browser, a web interface for browsing the LungMAP human lung anatomy and cell-type ontology terms." ; schema1:url . kgr:lmha.graph.ttl a schema1:OntologyProduct ; rdfs:label "LMHA ontology graph data, v1.4, Turtle format" ; dcterms:description "The LMHA (LungMAP Human Anatomy) ontology graph data, v1.4, as integrated and published by the Human Reference Atlas Knowledge Graph, in Turtle format. Licensed CC BY 4.0; publisher HuBMAP." ; schema1:url . kgr:lmha.graph.xml a schema1:OntologyProduct ; rdfs:label "LMHA ontology graph data, v1.4, RDF/XML format" ; dcterms:description "The LMHA (LungMAP Human Anatomy) ontology graph data, v1.4, as published by the Human Reference Atlas Knowledge Graph, in RDF/XML format." ; schema1:url . kgr:lmha.source.owl a schema1:OntologyProduct ; rdfs:label "LungMAP lung ontology OWL source file" ; dcterms:description "The source LungMAP lung ontology OWL file maintained by the Duke LungMAP team, the upstream artifact from which the LMHA anatomy terms are derived." ; schema1:url . kgr:lncbase.correlation-viz a schema1:Product ; rdfs:label "LncBase Correlation Visualizations" ; dcterms:description "Interactive correlation plots showing clustering of miRNA-lncRNA interactions across cell types and tissues" ; schema1:url . kgr:lncbase.expression-viz a schema1:Product ; rdfs:label "LncBase Expression Visualizations" ; dcterms:description "Interactive bar plots showing lncRNA expression profiles and subcellular localization (nucleus/cytoplasm)" ; schema1:url . kgr:lncbase.portal a schema1:GraphicalInterface ; rdfs:label "DIANA-LncBase Portal" ; dcterms:description "Main web portal for searching experimentally supported miRNA-lncRNA interactions with interactive visualizations" ; schema1:url . kgr:lncbase.ucsc-browser a schema1:Product ; rdfs:label "LncBase UCSC Browser Integration" ; dcterms:description "UCSC Genome Browser integration for visualizing miRNA binding events and variant locations on lncRNAs" ; schema1:url . kgr:lncbook.blast a schema1:GraphicalInterface ; rdfs:label "BLAST Search" ; dcterms:description "BLAST search tool for sequence similarity" ; schema1:url . kgr:lncbook.classification a schema1:GraphicalInterface ; rdfs:label "Classification Tool" ; dcterms:description "Genomic location annotation and classification tool" ; schema1:url . kgr:lncbook.conservation a schema1:GraphicalInterface ; rdfs:label "Conservation Browser" ; dcterms:description "Browse conservation features of lncRNA genes across 40 vertebrates" ; schema1:url . kgr:lncbook.conversion a schema1:GraphicalInterface ; rdfs:label "ID Conversion Tool" ; dcterms:description "ID conversion tool across 14 resources" ; schema1:url . kgr:lncbook.downloads a schema1:Product ; rdfs:label "Downloads" ; dcterms:description "Downloadable data files including gene annotations, expression profiles, and multi-omics annotations" ; schema1:url . kgr:lncbook.expression a schema1:GraphicalInterface ; rdfs:label "Expression Browser" ; dcterms:description "Browse expression profiles across 9 biological contexts (normal tissue, organ development, cell differentiation, etc.)" ; schema1:url . kgr:lncbook.interaction a schema1:GraphicalInterface ; rdfs:label "Interaction Browser" ; dcterms:description "Browse lncRNA-miRNA and lncRNA-protein interactions (146,092,274 lncRNA-miRNA and 772,745 lncRNA-protein interactions)" ; schema1:url . kgr:lncbook.lgc a schema1:GraphicalInterface ; rdfs:label "LGC Coding Potential Predictor" ; dcterms:description "LGC coding potential prediction tool" ; schema1:url . kgr:lncbook.methylation a schema1:GraphicalInterface ; rdfs:label "Methylation Browser" ; dcterms:description "Browse DNA methylation profiles in 16 diseases (14 cancers and 2 neurodevelopmental disorders)" ; schema1:url . kgr:lncbook.portal a schema1:GraphicalInterface ; rdfs:label "LncBook Portal" ; dcterms:description "Main web portal for searching and browsing human long non-coding RNAs with multi-omics annotations" ; schema1:url . kgr:lncbook.sprotein a schema1:GraphicalInterface ; rdfs:label "Small Protein Browser" ; dcterms:description "Browse 34,012 small proteins encoded by lncRNAs" ; schema1:url . kgr:lncbook.statistics a schema1:DocumentationProduct ; rdfs:label "Statistics Page" ; dcterms:description "Comprehensive database statistics and analysis results" ; schema1:url . kgr:lncbook.variation a schema1:GraphicalInterface ; rdfs:label "Variation Browser" ; dcterms:description "Browse 959,138 disease/trait-associated variants across lncRNA genes" ; schema1:url . kgr:lncrnadb.export a schema1:Product ; rdfs:label "Export Results" ; dcterms:description "Tab-delimited file download of search results" ; schema1:url . kgr:lncrnadb.nred-integration a schema1:GraphicalInterface ; rdfs:label "NRED Integration" ; dcterms:description "Integration with Noncoding RNA Expression Database (NRED) for expression information from various sources" . kgr:lncrnadb.portal a schema1:GraphicalInterface ; rdfs:label "lncRNAdb Portal" ; dcterms:description "Main web portal for searching and browsing long noncoding RNAs by name, sequence, species, or annotations" ; schema1:url . kgr:lncrnadb.search a schema1:GraphicalInterface ; rdfs:label "Search Interface" ; dcterms:description "Search interface supporting queries by lncRNA name or alias, nucleotide sequence string, species, annotation status, and full-text search" ; schema1:url . kgr:lncrnadb.submit a schema1:DocumentationProduct ; rdfs:label "User Submission System" ; dcterms:description "User submission interface for adding new entries and updating existing data with published information" . kgr:lncrnadb.ucsc-integration a schema1:GraphicalInterface ; rdfs:label "UCSC Genome Browser Integration" ; dcterms:description "Integration with UCSC Genome Browser for genomic context visualization" . kgr:lncrnadisease.site a schema1:GraphicalInterface ; rdfs:label "LncRNADisease Website" ; dcterms:description "Web interface for browsing and searching lncRNA-disease associations and lncRNA interactions." ; schema1:url . kgr:lncrnalyzr.api a schema1:ProgrammingInterface ; rdfs:label "lncRNAlyzr API" ; dcterms:description "RESTful API for programmatic access to lncRNA annotations, interactions, and functional predictions" ; schema1:url . kgr:lncrnalyzr.portal a schema1:GraphicalInterface ; rdfs:label "lncRNAlyzr Explorer" ; dcterms:description "Interactive web platform for exploring lncRNA networks with expression visualization and functional analysis tools" ; schema1:url . kgr:loinc.api.fhir a schema1:ProgrammingInterface ; rdfs:label "LOINC FHIR API" ; dcterms:description "HL7 FHIR-based API providing programmatic access to LOINC terminology content (requires free LOINC login)" ; schema1:url . kgr:loinc.archive a schema1:DataModelProduct ; rdfs:label "LOINC Release Archive" ; dcterms:description "Archive of past LOINC releases for version-specific implementations" ; schema1:url . kgr:loinc.complete a schema1:DataModelProduct ; rdfs:label "LOINC Complete Release" ; dcterms:description "Complete LOINC release archive (table and accessory files) downloadable after free registration" ; schema1:url . kgr:loinc.principles a schema1:DocumentationProduct ; rdfs:label "LOINC Principles Document" ; dcterms:description "LOINC Mission, Vision, and Guiding Principles for open terminology development (CC-BY 4.0 licensed document)" ; schema1:url . kgr:loinc.web a schema1:GraphicalInterface ; rdfs:label "LOINC Website & Browsers" ; dcterms:description "Web-based tools including SearchLOINC and Hierarchy Browser for interactive exploration of LOINC content (free login required)" ; schema1:url . kgr:lotus.dataset a schema1:Product ; rdfs:label "LOTUS Frozen Dataset" ; dcterms:description "Frozen (2021-12-20) tabular snapshot of the LOTUS structure-organism pair dataset with associated metadata, archived on Zenodo for reproducible bulk download." ; schema1:url . kgr:lotus.portal a schema1:GraphicalInterface ; rdfs:label "LOTUS Natural Products Online Portal" ; dcterms:description "LOTUS Natural Products Online (LNPN) web interface for structural search, taxonomy-oriented queries, and browsing of referenced structure-organism pairs." ; schema1:url . kgr:louisiana-tumor-registry.data-request a schema1:GraphicalInterface ; rdfs:label "Louisiana Tumor Registry Data Request" ; dcterms:description "Web page describing how researchers and other parties may request Louisiana Tumor Registry data, including data use agreement and request procedures." ; schema1:url . kgr:lsdb-archive.about a schema1:DocumentationProduct ; rdfs:label "About the LSDB Archive" ; dcterms:description "About page describing the purpose of the archive, its common metadata format and its use of Creative Commons licenses." ; schema1:url . kgr:lsdb-archive.data-list a schema1:GraphicalInterface ; rdfs:label "LSDB Archive Data List" ; dcterms:description "Searchable list of data items (individual files and tables) across all archived databases, with item-level metadata." ; schema1:url . kgr:lsdb-archive.database-catalog-csv a schema1:Product ; rdfs:label "LSDB Archive Database Catalog (CSV)" ; dcterms:description "Machine-readable catalog of archived databases in CSV, with the same fields as the JSON catalog." ; schema1:url . kgr:lsdb-archive.database-catalog-json a schema1:Product ; rdfs:label "LSDB Archive Database Catalog (JSON)" ; dcterms:description "Machine-readable catalog of archived databases in JSON, with name, Integbio Database Catalog ID, DOI, creators, categories, organisms, description, original sites and download page for each database. Some records in the file are malformed duplicates." ; schema1:url . kgr:lsdb-archive.downloads a schema1:Product ; rdfs:label "LSDB Archive Download Directory" ; dcterms:description "Open directory of archived database files, with one folder per database and dated release subfolders plus a LATEST link. File formats vary by database." ; schema1:url . kgr:lsdb-archive.metadata-dump a schema1:Product ; rdfs:label "LSDB Archive Metadata Export" ; dcterms:description "ZIP bundle of the full English metadata export, containing database-level metadata (dbmeta_en.json) and data-item-level metadata (datameta_en.json) for all archived databases." ; schema1:url . kgr:lsdb-archive.portal a schema1:GraphicalInterface ; rdfs:label "LSDB Archive Portal" ; dcterms:description "English web portal of the LSDB Archive for browsing archived databases, reading each database's description and license, and reaching its download page and TogoDB simple search." ; schema1:url . kgr:lsdb-archive.terms a schema1:DocumentationProduct ; rdfs:label "NBDC Terms of Service" ; dcterms:description "NBDC terms of service for the LSDB Archive site, in English (PDF)." ; schema1:url . kgr:m-csa.download a schema1:DocumentationProduct ; rdfs:label "M-CSA Download and API" ; dcterms:description "M-CSA download and API page describing export formats and programmatic access to the atlas." ; schema1:url . kgr:m-csa.portal a schema1:GraphicalInterface ; rdfs:label "M-CSA Portal" ; dcterms:description "Official M-CSA website for browsing curated enzyme mechanisms, catalytic sites, and related entry statistics." ; schema1:url . kgr:ma.kg-bioportal a schema1:GraphProduct ; rdfs:label "MA KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Mouse Adult Gross Anatomy Ontology (MA), produced by KG-Bioportal from the BioPortal submission. The archive contains MA_nodes.tsv and MA_edges.tsv." ; schema1:url . kgr:ma.obo a schema1:OntologyProduct ; rdfs:label "ma.obo" ; dcterms:description "Mouse adult gross anatomy in OBO format" ; schema1:url . kgr:ma.owl a schema1:OntologyProduct ; rdfs:label "ma.owl" ; dcterms:description "Mouse adult gross anatomy in OWL format" ; schema1:url . kgr:maastricht-ids a "Organization" ; rdfs:label "Maastricht University Institute of Data Science" . kgr:maine-egad.landing a schema1:GraphicalInterface ; rdfs:label "Maine EGAD landing page" ; dcterms:description "Maine DEP landing page describing the Environmental and Geographic Analysis Database (EGAD), its scope, and data content." ; schema1:url . kgr:maine-egad.samples a schema1:GraphicalInterface ; rdfs:label "Maine EGAD data request" ; dcterms:description "Maine DEP EGAD data request interface for obtaining environmental sampling data, including PFAS sample results." ; schema1:url . kgr:maizegdb.downloads a schema1:Product ; rdfs:label "MaizeGDB Download Server" ; dcterms:description "Bulk download server hosting maize and Andropogoneae genome assemblies, gene models (GFF, CDS, protein, genomic sequence), transposable element annotations, and other genomics datasets." ; schema1:url . kgr:maizegdb.gene_model_gff a schema1:Product ; rdfs:label "MaizeGDB Gene Model GFF Files" ; dcterms:description "Gene model annotation files in GFF format for maize genome assemblies hosted on the MaizeGDB download server." ; schema1:url . kgr:maizegdb.maizemine a schema1:Product ; rdfs:label "MaizeMine Downloads" ; dcterms:description "MaizeMine data warehouse downloads providing integrated and queryable maize genomics datasets." ; schema1:url . kgr:malacards.archive a schema1:DocumentationProduct ; rdfs:label "MalaCards Previous Version Archive" ; dcterms:description "Access to previous versions of the MalaCards database." ; schema1:url . kgr:malacards.categories a schema1:GraphicalInterface ; rdfs:label "MalaCards Disease Categories" ; dcterms:description "Browse diseases by global categories (cancer, genetic, rare, etc.) and anatomical categories (neuronal, cardiovascular, etc.)." ; schema1:url . kgr:malacards.portal a schema1:GraphicalInterface ; rdfs:label "MalaCards Web Portal" ; dcterms:description "Searchable web interface for exploring human diseases with integrated data on genes, symptoms, drugs, mutations, clinical trials and more." ; schema1:url . kgr:malacards.search a schema1:GraphicalInterface ; rdfs:label "MalaCards Advanced Search" ; dcterms:description "Advanced search interface for querying diseases by multiple criteria." ; schema1:url . kgr:mamo.kg-bioportal a schema1:GraphProduct ; rdfs:label "MAMO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Mathematical Modelling Ontology (MAMO), produced by KG-Bioportal from the BioPortal submission. The archive contains MAMO_nodes.tsv and MAMO_edges.tsv." ; schema1:url . kgr:mamo.owl a schema1:OntologyProduct ; rdfs:label "mamo.owl" ; dcterms:description "Mathematical modeling ontology in OWL format" ; schema1:url . kgr:markerdb.downloads a schema1:DocumentationProduct ; rdfs:label "MarkerDB Downloads Page" ; dcterms:description "MarkerDB downloads page listing public TSV and XML exports for biomarker classes and categories." ; schema1:url . kgr:markerdb.karyotypes.tsv a schema1:Product ; rdfs:label "MarkerDB Karyotype Biomarkers TSV" ; dcterms:description "TSV export of MarkerDB karyotype biomarkers with associated conditions." ; schema1:url . kgr:markerdb.web a schema1:Product ; rdfs:label "MarkerDB Web Portal" ; dcterms:description "MarkerDB website for searching and browsing biomarker records." ; schema1:url . kgr:massive.docs a schema1:DocumentationProduct ; rdfs:label "MassIVE Documentation" ; dcterms:description "MassIVE documentation covering dataset sharing, public dataset access, reanalysis workflows, APIs, and related MassIVE services." ; schema1:url . kgr:massive.portal a schema1:GraphicalInterface ; rdfs:label "MassIVE Web Portal" ; dcterms:description "MassIVE web portal for submitting, browsing, downloading, and reanalyzing public mass spectrometry datasets." ; schema1:url . kgr:mat.kg-bioportal a schema1:GraphProduct ; rdfs:label "MAT KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Minimal Anatomical Terminology (MAT), produced by KG-Bioportal from the BioPortal submission. The archive contains MAT_nodes.tsv and MAT_edges.tsv." ; schema1:url . kgr:matador.publication a schema1:DocumentationProduct ; rdfs:label "SuperTarget and Matador Publication" ; dcterms:description "Publication describing SuperTarget and MATADOR resources for exploring drug-target relationships, the primary stable reference for the MATADOR dataset." ; schema1:url . kgr:maudekg.sparql a schema1:ProgrammingInterface ; rdfs:label "FDA MAUDE Adverse Event Knowledge Graph SPARQL" ; dcterms:description "SPARQL endpoint for FDA MAUDE Adverse Event Knowledge Graph" ; schema1:url . kgr:maudekg.tpf a schema1:ProgrammingInterface ; rdfs:label "FDA MAUDE Adverse Event Knowledge Graph TPF" ; dcterms:description "Triple Pattern Fragments endpoint for FDA MAUDE Adverse Event Knowledge Graph" ; schema1:url . kgr:maven-central.website a schema1:GraphicalInterface ; rdfs:label "Maven Central website" ; dcterms:description "Web interface and public repository for browsing and retrieving Maven packages" ; schema1:url . kgr:maxo.json a schema1:OntologyProduct ; rdfs:label "maxo.json" ; dcterms:description "Medical Action Ontology in JSON format" ; schema1:url . kgr:maxo.maxo-base.json a schema1:OntologyProduct ; rdfs:label "maxo.maxo-base.json" ; dcterms:description "Medical Action Ontology in JSON format" ; schema1:url . kgr:maxo.maxo-base.obo a schema1:OntologyProduct ; rdfs:label "maxo.maxo-base.obo" ; dcterms:description "Medical Action Ontology in OBO format" ; schema1:url . kgr:maxo.maxo-base.owl a schema1:OntologyProduct ; rdfs:label "maxo.maxo-base.owl" ; dcterms:description "Medical Action Ontology in OWL format" ; schema1:url . kgr:maxo.obo a schema1:OntologyProduct ; rdfs:label "maxo.obo" ; dcterms:description "Medical Action Ontology in OBO format" ; schema1:url . kgr:maxo.owl a schema1:OntologyProduct ; rdfs:label "maxo.owl" ; dcterms:description "Medical Action Ontology in OWL format" ; schema1:url . kgr:mbodymap.site a schema1:GraphicalInterface ; rdfs:label "mBodyMap web site" ; dcterms:description "Web interface for browsing microbes by body site, by health and disease phenotype and by taxon, with curated project and run pages and graphical comparisons of abundance and prevalence" ; schema1:url . kgr:mcgill-genepi a "Organization" ; rdfs:label "Richards Lab (Genetic Epidemiology), McGill University" . kgr:mco.kg-bioportal a schema1:GraphProduct ; rdfs:label "MCO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Microbial Conditions Ontology (MCO), produced by KG-Bioportal from the BioPortal submission. The archive contains MCO_nodes.tsv and MCO_edges.tsv." ; schema1:url . kgr:mco.obo a schema1:OntologyProduct ; rdfs:label "mco.obo" ; dcterms:description "Microbial Conditions Ontology in OBO format" ; schema1:url . kgr:mco.owl a schema1:OntologyProduct ; rdfs:label "mco.owl" ; dcterms:description "Microbial Conditions Ontology in OWL format" ; schema1:url . kgr:mcro.kg-bioportal a schema1:GraphProduct ; rdfs:label "MCRO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Model Card Report Ontology (MCRO), produced by KG-Bioportal from the BioPortal submission. The archive contains MCRO_nodes.tsv and MCRO_edges.tsv." ; schema1:url . kgr:mcro.owl a schema1:OntologyProduct ; rdfs:label "mcro.owl" ; dcterms:description "Model Card Report Ontology in OWL format" ; schema1:url . kgr:mechreponet.code a schema1:ProcessProduct ; rdfs:label "MechRepoNet Code" ; dcterms:description "Python code for building and analyzing the MechRepoNet knowledge graph" ; schema1:url . kgr:med-rt.accessory_files a schema1:Product ; rdfs:label "Core MED-RT Accessory Files" ; dcterms:description "Accessory files for the current MED-RT release." ; schema1:url . kgr:med-rt.documentation a schema1:DocumentationProduct ; rdfs:label "MED-RT Documentation" ; dcterms:description "MED-RT documentation PDF distributed with the current release." ; schema1:url . kgr:med-rt.release a schema1:DocumentationProduct ; rdfs:label "MED-RT Release Files" ; dcterms:description "MED-RT distribution endpoint containing terminology releases and related files." ; schema1:url . kgr:med-rt.release_notes a schema1:DocumentationProduct ; rdfs:label "MED-RT Release Notes" ; dcterms:description "Current MED-RT release notes describing monthly changes and upstream source versions." ; schema1:url . kgr:med-rt.terms a schema1:Product ; rdfs:label "MED-RT Term List" ; dcterms:description "Tab-delimited MED-RT term list from the current NCI EVS distribution." ; schema1:url . kgr:meddra.ich-page a schema1:DocumentationProduct ; rdfs:label "ICH MedDRA Documentation" ; dcterms:description "ICH MedDRA page describing the terminology, governance, MSSO maintenance, and regulatory use cases." ; schema1:url . kgr:meddra.release-files a schema1:Product ; rdfs:label "MedDRA Terminology Release Files" ; dcterms:description "MedDRA terminology release files maintained and distributed by the MedDRA MSSO for subscribers, supporting regulatory coding and pharmacovigilance workflows." ; schema1:url . kgr:meddra.web-browser a schema1:GraphicalInterface ; rdfs:label "MedDRA Web-Based Browser" ; dcterms:description "MedDRA Web-Based Browser provided for MedDRA subscribers to search and view MedDRA terminology content." ; schema1:url . kgr:medgen.cui-history a schema1:Product ; rdfs:label "MedGen CUI History" ; dcterms:description "History file tracking changes to MedGen CUIs" ; schema1:url . kgr:medgen.faq a schema1:DocumentationProduct ; rdfs:label "FAQ" ; dcterms:description "Frequently asked questions about MedGen" ; schema1:url . kgr:medgen.help a schema1:DocumentationProduct ; rdfs:label "MedGen Documentation" ; dcterms:description "Documentation, help pages, and user guides for MedGen" ; schema1:url . kgr:medgen.portal a schema1:GraphicalInterface ; rdfs:label "MedGen Portal" ; dcterms:description "Main web portal for searching and browsing conditions, phenotypes, and findings in humans related to medical genetics" ; schema1:url . kgr:medgen.presentations a schema1:DocumentationProduct ; rdfs:label "MedGen Presentations" ; dcterms:description "Directory of MedGen presentations related to terminology and curation workflows" ; schema1:url . kgr:medgen.readme a schema1:DocumentationProduct ; rdfs:label "README" ; dcterms:description "README file with detailed information about FTP data files and formats" ; schema1:url . kgr:medgen.search a schema1:GraphicalInterface ; rdfs:label "Advanced Search" ; dcterms:description "Advanced search interface with support for queries by name, related gene, clinical feature, and other criteria" ; schema1:url . kgr:medgen.sources a schema1:Product ; rdfs:label "MedGen Sources" ; dcterms:description "Information about source databases and their contributions to MedGen" ; schema1:url . kgr:medgen.uid-cui-history a schema1:Product ; rdfs:label "MedGen UID CUI History" ; dcterms:description "History of mappings between MedGen UIDs and CUIs over time" ; schema1:url . kgr:medi.legacy_github a schema1:ProcessProduct ; rdfs:label "Archived MATRIX Indication List Repository" ; dcterms:description "Archived Every Cure MATRIX Indication List repository that now points users to the medic repository" ; schema1:url . kgr:medi.release a schema1:Product ; rdfs:label "MEDI Dataset Releases" ; dcterms:description "Latest medic release of the MeDI dataset and related regulatory source extracts" ; schema1:url . kgr:medispan-gpi.commercial_data a schema1:Product ; rdfs:label "Medi-Span GPI Commercial Data" ; dcterms:description "Commercial Medi-Span GPI terminology data maintained by Wolters Kluwer for drug concept identification and therapeutic classification" ; schema1:url . kgr:medispan-gpi.documentation a schema1:DocumentationProduct ; rdfs:label "Medi-Span GPI Documentation" ; dcterms:description "Official Wolters Kluwer product page describing the Medi-Span Generic Product Identifier and its therapeutic classification model" ; schema1:url . kgr:medispan-gpi.support a schema1:DocumentationProduct ; rdfs:label "Medi-Span Customer Support" ; dcterms:description "Customer support and access point for Medi-Span subscribers with product delivery, account, and content questions" ; schema1:url . kgr:medlineplus.connect_api a schema1:ProgrammingInterface ; rdfs:label "MedlinePlus Connect API" ; dcterms:description "MedlinePlus Connect API enabling electronic health record systems and patient portals to link patients to relevant MedlinePlus health information based on their diagnoses and medications" ; schema1:url . kgr:medlineplus.genetics_api a schema1:ProgrammingInterface ; rdfs:label "MedlinePlus Genetics API" ; dcterms:description "API and data files for retrieving genetic condition and gene information from MedlinePlus Genetics in XML or JSON format" ; schema1:url . kgr:medlineplus.kg-bioportal a schema1:GraphProduct ; rdfs:label "MEDLINEPLUS KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of MedlinePlus Health Topics (MEDLINEPLUS), produced by KG-Bioportal from the BioPortal submission. The archive contains MEDLINEPLUS_nodes.tsv and MEDLINEPLUS_edges.tsv." ; schema1:url . kgr:medlineplus.rss_feeds a schema1:Product ; rdfs:label "MedlinePlus RSS Feeds" ; dcterms:description "General-interest and health-topic RSS feed directory for current MedlinePlus content updates" ; schema1:url . kgr:medlineplus.web_service a schema1:ProgrammingInterface ; rdfs:label "MedlinePlus Web Service" ; dcterms:description "Web service providing search-based health topic data in XML format for integration with external applications" ; schema1:url . kgr:medlineplus.website a schema1:GraphicalInterface ; rdfs:label "MedlinePlus Website" ; dcterms:description "Main MedlinePlus website providing consumer-friendly health information organized into health topics, medical encyclopedia, drug information, medical tests, and genetics resources in English and Spanish" ; schema1:url . kgr:medlineplus.xml_files a schema1:Product ; rdfs:label "MedlinePlus XML Data Files" ; dcterms:description "Downloadable XML files containing complete records for all English and Spanish health topics on MedlinePlus" ; schema1:url . kgr:mesh.api.eutilities a schema1:ProgrammingInterface ; rdfs:label "MeSH E-utilities API" ; dcterms:description "E-utilities API for programmatic access to MeSH data through NCBI's Entrez system." ; schema1:url . kgr:mesh.api.rdf a schema1:ProgrammingInterface ; rdfs:label "MeSH RDF API" ; dcterms:description "SPARQL endpoint and REST API for querying MeSH RDF data with semantic web technologies." ; schema1:url . kgr:mesh.ascii a schema1:OntologyProduct ; rdfs:label "MeSH ASCII Data" ; dcterms:description "MeSH data in ASCII text format containing descriptors, qualifiers, and supplemental concept records. Updated annually with daily SCR updates." ; schema1:url . kgr:mesh.browser a schema1:GraphicalInterface ; rdfs:label "MeSH Browser" ; dcterms:description "The official MeSH Browser for searching and browsing the Medical Subject Headings vocabulary. Provides hierarchical navigation and term details." ; schema1:url . kgr:mesh.documentation a schema1:DocumentationProduct ; rdfs:label "MeSH Documentation and Tutorials" ; dcterms:description "Comprehensive documentation about MeSH including tutorials, webinars, and user guides for understanding and using the vocabulary." ; schema1:url . kgr:mesh.marc a schema1:OntologyProduct ; rdfs:label "MeSH MARC 21 Data" ; dcterms:description "MeSH data in MARC 21 bibliographic format for library systems. Posted monthly." ; schema1:url . kgr:mesh.ondemand a schema1:Product ; rdfs:label "MeSH on Demand" ; dcterms:description "MeSH on Demand service for suggesting MeSH terms for text or citations. Helps identify appropriate subject headings for indexing." ; schema1:url . kgr:mesh.rdf a schema1:OntologyProduct ; rdfs:label "MeSH RDF Data" ; dcterms:description "MeSH data in RDF (Resource Description Framework) format for semantic web applications. Updated daily Monday through Friday." ; schema1:url . kgr:mesh.sparql.editor a schema1:GraphicalInterface ; rdfs:label "MeSH SPARQL Query Editor" ; dcterms:description "SPARQL query editor interface for interactive querying of MeSH data using semantic web query language." ; schema1:url . kgr:mesh.xml a schema1:OntologyProduct ; rdfs:label "MeSH XML Data" ; dcterms:description "MeSH data in XML format containing descriptors, qualifiers, and supplemental concept records. Updated annually with daily updates for SCRs." ; schema1:url . kgr:metabokg.workflow a schema1:ProcessProduct ; rdfs:label "MetaBoKG Transformation Workflow" ; dcterms:description "Source-code workflow that fetches PubMed and PMC context, extracts GNPS and MassIVE identifiers, downloads GNPS job archives, materializes RDF with RML mappings, loads Virtuoso, and runs competency-question SPARQL queries." ; schema1:url . kgr:metabolights.api a schema1:ProgrammingInterface ; rdfs:label "MetaboLights REST API" ; dcterms:description "MetaboLights RESTful web service (MtblsWS-Py) for listing studies and retrieving study metadata, ISA-Tab files and metabolite assignments, documented with an OpenAPI specification." ; schema1:url . kgr:metabolights.code a schema1:ProcessProduct ; rdfs:label "MetaboLights Source Code" ; dcterms:description "GitHub organization holding the MetaboLights web service, submission tooling and pipelines." ; schema1:url . kgr:metabolights.docs a schema1:DocumentationProduct ; rdfs:label "MetaboLights Guides" ; dcterms:description "MetaboLights help guides covering study submission, ISA-Tab metadata, data formats and downloads." ; schema1:url . kgr:metabolights.ebeye.complete a schema1:Product ; rdfs:label "MetaboLights EB-eye Complete Export" ; dcterms:description "Complete EB-eye XML export of MetaboLights studies and metabolites, as used for EBI Search indexing, regenerated daily (about 369 MB on 2026-10-04)." ; schema1:url . kgr:metabolights.ebeye.studies a schema1:Product ; rdfs:label "MetaboLights EB-eye Studies Export" ; dcterms:description "EB-eye XML export of MetaboLights study records only, regenerated daily (about 344 MB on 2026-10-04)." ; schema1:url . kgr:metabolights.portal a schema1:GraphicalInterface ; rdfs:label "MetaboLights Web Portal" ; dcterms:description "Web interface for searching, browsing and submitting MetaboLights metabolomics studies (MTBLS accessions) and their metabolite annotations." ; schema1:url . kgr:metabolights.studies a schema1:Product ; rdfs:label "MetaboLights Public Studies Archive" ; dcterms:description "FTP/HTTPS download area holding every public MetaboLights study as a directory of ISA-Tab metadata, raw and processed data files, organized by MTBLS accession." ; schema1:url . kgr:metacyc.api a schema1:ProgrammingInterface ; rdfs:label "MetaCyc Web Services" ; dcterms:description "MetaCyc web services and APIs for programmatic access to pathway and metabolic reference data." ; schema1:url . kgr:metacyc.portal a schema1:GraphicalInterface ; rdfs:label "MetaCyc Portal" ; dcterms:description "Official MetaCyc portal for browsing curated metabolic pathways, reactions, metabolites, enzymes, and genes across all domains of life." ; schema1:url . kgr:metanetx.mnxref.metabolites a schema1:Product ; rdfs:label "MetaNetX MNXref Metabolites" ; dcterms:description "MNXref unified namespace for metabolites across databases" ; schema1:url . kgr:metanetx.mnxref.reactions a schema1:Product ; rdfs:label "MetaNetX MNXref Reactions" ; dcterms:description "MNXref unified namespace for reactions across databases" ; schema1:url . kgr:metanetx.rdf a schema1:Product ; rdfs:label "MetaNetX RDF Data" ; dcterms:description "RDF version of the MetaNetX MNXref data for semantic web applications" ; schema1:url . kgr:metanetx.site a schema1:GraphicalInterface ; rdfs:label "MetaNetX Web Interface" ; dcterms:description "Web interface for exploring and analyzing metabolic networks" ; schema1:url . kgr:metanetx.sparql a schema1:ProgrammingInterface ; rdfs:label "MetaNetX SPARQL Endpoint" ; dcterms:description "SPARQL endpoint for querying MetaNetX RDF data" ; schema1:url . kgr:metatraits.site a schema1:GraphicalInterface ; rdfs:label "metaTraits Web Portal" ; dcterms:description "Web interface to explore and query microbial trait data in metaTraits, covering over 2.2 million genomes and 140+ harmonized traits." ; schema1:url . kgr:metpo.kg-bioportal a schema1:GraphProduct ; rdfs:label "METPO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of METPO (METPO), produced by KG-Bioportal from the BioPortal submission. The archive contains METPO_nodes.tsv and METPO_edges.tsv." ; schema1:url . kgr:metpo.owl a schema1:OntologyProduct ; rdfs:label "METPO OWL" ; dcterms:description "METPO ontology in OWL format" ; schema1:url . kgr:mf.kg-bioportal a schema1:GraphProduct ; rdfs:label "MF KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Mental Functioning Ontology (MF), produced by KG-Bioportal from the BioPortal submission. The archive contains MF_nodes.tsv and MF_edges.tsv." ; schema1:url . kgr:mf.owl a schema1:OntologyProduct ; rdfs:label "mf.owl" ; dcterms:description "Mental Functioning Ontology in OWL format" ; schema1:url . kgr:mfmo.kg-bioportal a schema1:GraphProduct ; rdfs:label "MFMO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Mammalian Feeding Muscle Ontology (MFMO), produced by KG-Bioportal from the BioPortal submission. The archive contains MFMO_nodes.tsv and MFMO_edges.tsv." ; schema1:url . kgr:mfmo.owl a schema1:OntologyProduct ; rdfs:label "mfmo.owl" ; dcterms:description "Mammalian Feeding Muscle Ontology in OWL format" ; schema1:url . kgr:mfo.kg-bioportal a schema1:GraphProduct ; rdfs:label "MFO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Medaka Fish Anatomy and Development Ontology (MFO), produced by KG-Bioportal from the BioPortal submission. The archive contains MFO_nodes.tsv and MFO_edges.tsv." ; schema1:url . kgr:mfo.owl a schema1:OntologyProduct ; rdfs:label "mfo.owl" ; dcterms:description "Medaka fish anatomy and development in OWL format" ; schema1:url . kgr:mfoem.kg-bioportal a schema1:GraphProduct ; rdfs:label "MFOEM KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Emotion Ontology (MFOEM), produced by KG-Bioportal from the BioPortal submission. The archive contains MFOEM_nodes.tsv and MFOEM_edges.tsv." ; schema1:url . kgr:mfoem.owl a schema1:OntologyProduct ; rdfs:label "mfoem.owl" ; dcterms:description "Emotion Ontology in OWL format" ; schema1:url . kgr:mfomd.kg-bioportal a schema1:GraphProduct ; rdfs:label "MFOMD KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of MFO Mental Disease Ontology (MFOMD), produced by KG-Bioportal from the BioPortal submission. The archive contains MFOMD_nodes.tsv and MFOMD_edges.tsv." ; schema1:url . kgr:mfomd.owl a schema1:OntologyProduct ; rdfs:label "mfomd.owl" ; dcterms:description "Mental Disease Ontology in OWL format" ; schema1:url . kgr:mgd.downloads a schema1:Product ; rdfs:label "MGD Data Downloads" ; dcterms:description "Downloadable data reports including genes, markers, phenotypes, expression annotations, and orthology in various formats" ; schema1:url . kgr:mgd.gxd a schema1:GraphicalInterface ; rdfs:label "Gene Expression Database (GXD)" ; dcterms:description "Gene Expression Database documenting spatiotemporal gene expression patterns during mouse development and adulthood" ; schema1:url . kgr:mgd.mousemine a schema1:ProgrammingInterface ; rdfs:label "MouseMine" ; dcterms:description "MouseMine data mining platform providing programmatic access to MGD data through InterMine query interface" ; schema1:url . kgr:mgd.portal a schema1:GraphicalInterface ; rdfs:label "MGI Web Portal" ; dcterms:description "Primary web interface providing integrated access to mouse genes, phenotypes, expression data, disease models, and genome features" ; schema1:url . kgr:mgi.portal a schema1:GraphicalInterface ; rdfs:label "Mouse Genome Informatics Portal" ; dcterms:description "Main Mouse Genome Informatics portal for accessing mouse genes, alleles, phenotypes, disease models, and related reference data." ; schema1:url . kgr:mgnify.api a schema1:ProgrammingInterface ; rdfs:label "MGnify REST API" ; dcterms:description "REST API for programmatic access to MGnify data, including studies, analyses, genomes, and metadata." ; schema1:url . kgr:mgnify.docs a schema1:DocumentationProduct ; rdfs:label "MGnify Documentation" ; dcterms:description "Documentation and help resources for MGnify, including user guides and API documentation." ; schema1:url . kgr:mgnify.ftp a schema1:Product ; rdfs:label "MGnify FTP Archive" ; dcterms:description "FTP archive with current and archived release files, including sequences, annotations, and genome catalogues." ; schema1:url . kgr:mgnify.genomes a schema1:Product ; rdfs:label "MGnify Genomes Catalogue" ; dcterms:description "Biome-specific microbial genome catalogues, including marine, human gut, and other environments." ; schema1:url . kgr:mgnify.portal a schema1:GraphicalInterface ; rdfs:label "MGnify Web Portal" ; dcterms:description "Web portal for searching, browsing, and analyzing microbiome and metagenomic datasets, including studies, analyses, genomes, and biomes." ; schema1:url . kgr:mgnify.proteins a schema1:Product ; rdfs:label "MGnify Proteins Database" ; dcterms:description "Protein database derived from metagenomic analyses, including protein families and annotations." ; schema1:url . kgr:mgnify.training a schema1:DocumentationProduct ; rdfs:label "MGnify Training" ; dcterms:description "On-demand and live training resources for MGnify users, including webinars and tutorials." ; schema1:url . kgr:mi.kg-bioportal a schema1:GraphProduct ; rdfs:label "MI KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Molecular Interactions (MI), produced by KG-Bioportal from the BioPortal submission. The archive contains MI_nodes.tsv and MI_edges.tsv." ; schema1:url . kgr:mi.obo a schema1:OntologyProduct ; rdfs:label "mi.obo" ; dcterms:description "Molecular Interactions Controlled Vocabulary in OBO format" ; schema1:url . kgr:mi.owl a schema1:OntologyProduct ; rdfs:label "mi.owl" ; dcterms:description "Molecular Interactions Controlled Vocabulary in OWL format" ; schema1:url . kgr:miapa.kg-bioportal a schema1:GraphProduct ; rdfs:label "MIAPA KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of MIAPA Ontology (MIAPA), produced by KG-Bioportal from the BioPortal submission. The archive contains MIAPA_nodes.tsv and MIAPA_edges.tsv." ; schema1:url . kgr:miapa.owl a schema1:OntologyProduct ; rdfs:label "miapa.owl" ; dcterms:description "MIAPA Ontology in OWL format" ; schema1:url . kgr:micro.owl a schema1:OntologyProduct ; rdfs:label "micro.owl" ; dcterms:description "Ontology of Prokaryotic Phenotypic and Metabolic Characters in OWL format" ; schema1:url . kgr:micromap.mapforge a schema1:ProcessProduct ; rdfs:label "MicroMap MapForge" ; dcterms:description "MapForge, the reviewable ingestion pipeline for MicroMap. It profiles tabular sources (CSV, TSV, JSON, JSONL, Parquet, SQL dumps), resolves entities against the graph, emits deterministic parameterized Cypher bundles and writes them to Neo4j 5.x only after a reviewer approves the bundle. BioCypher adapters are supported through the import-kg path. Distributed as a Python package in the micromap-oss repository." ; schema1:url . kgr:micromap.schema a schema1:DataModelProduct ; rdfs:label "MicroMap Neo4j Schema" ; dcterms:description "Neo4j graph schema for MicroMap, defining the node labels (Taxon, Disease, Compound, Pathway, Gene, Drug, Protein, Paper, Study, BodySite, DrugClass), relationship types and indexes, as Cypher constraint and index statements." ; schema1:url . kgr:mint.advanced.search a schema1:GraphicalInterface ; rdfs:label "MINT Advanced Search" ; dcterms:description "Advanced search interface for querying MINT data with field-specific searches and boolean operators." ; schema1:url . kgr:mint.portal a schema1:GraphicalInterface ; rdfs:label "MINT Web Portal" ; dcterms:description "Web interface for browsing, searching, and visualizing protein-protein interaction data from MINT with advanced search capabilities." ; schema1:url . kgr:mirbase.ath-gff3 a schema1:Product ; rdfs:label "Arabidopsis (ath) Genome Coordinates" ; dcterms:description "Genome coordinates for Arabidopsis microRNAs in GFF3 format" ; schema1:url . kgr:mirbase.browse a schema1:GraphicalInterface ; rdfs:label "miRBase Browse Interface" ; dcterms:description "Browse interface for exploring microRNA entries organized by species and other criteria" ; schema1:url . kgr:mirbase.cel-gff3 a schema1:Product ; rdfs:label "C. elegans (cel) Genome Coordinates" ; dcterms:description "Genome coordinates for C. elegans microRNAs in GFF3 format" ; schema1:url . kgr:mirbase.dead a schema1:Product ; rdfs:label "miRNA.dead" ; dcterms:description "List of entries that have been removed from the database" ; schema1:url . kgr:mirbase.diff a schema1:Product ; rdfs:label "miRNA.diff" ; dcterms:description "List of changes between the last release and current release" ; schema1:url . kgr:mirbase.dme-gff3 a schema1:Product ; rdfs:label "Drosophila (dme) Genome Coordinates" ; dcterms:description "Genome coordinates for Drosophila microRNAs in GFF3 format" ; schema1:url . kgr:mirbase.dre-gff3 a schema1:Product ; rdfs:label "Zebrafish (dre) Genome Coordinates" ; dcterms:description "Genome coordinates for zebrafish microRNAs in GFF3 format" ; schema1:url . kgr:mirbase.ftp a schema1:Product ; rdfs:label "miRBase FTP Archive" ; dcterms:description "FTP archive with current release data files and previous releases" ; schema1:url . kgr:mirbase.genomic-search a schema1:GraphicalInterface ; rdfs:label "Genomic Location Search" ; dcterms:description "Search interface for finding microRNAs by genomic location coordinates" ; schema1:url . kgr:mirbase.hairpin-fa a schema1:Product ; rdfs:label "hairpin.fa" ; dcterms:description "FASTA format sequences of all microRNA hairpin precursors" ; schema1:url . kgr:mirbase.help a schema1:DocumentationProduct ; rdfs:label "miRBase Help Documentation" ; dcterms:description "Comprehensive help documentation including submission guidelines, search instructions, genome assemblies, and naming conventions" ; schema1:url . kgr:mirbase.hsa-gff3 a schema1:Product ; rdfs:label "Human (hsa) Genome Coordinates" ; dcterms:description "Genome coordinates for human microRNAs in GFF3 format" ; schema1:url . kgr:mirbase.mature-fa a schema1:Product ; rdfs:label "mature.fa" ; dcterms:description "FASTA format sequences of all mature microRNA sequences" ; schema1:url . kgr:mirbase.mirna-dat a schema1:Product ; rdfs:label "miRNA.dat" ; dcterms:description "All published microRNA data in EMBL format" ; schema1:url . kgr:mirbase.mmu-gff3 a schema1:Product ; rdfs:label "Mouse (mmu) Genome Coordinates" ; dcterms:description "Genome coordinates for mouse microRNAs in GFF3 format" ; schema1:url . kgr:mirbase.portal a schema1:GraphicalInterface ; rdfs:label "miRBase Portal" ; dcterms:description "Web portal for searching and browsing microRNA sequences by identifier, keyword, genomic location, tissue expression, or sequence" ; schema1:url . kgr:mirbase.readme a schema1:DocumentationProduct ; rdfs:label "README" ; dcterms:description "Release notes and documentation for data file formats" ; schema1:url . kgr:mirbase.rno-gff3 a schema1:Product ; rdfs:label "Rat (rno) Genome Coordinates" ; dcterms:description "Genome coordinates for rat microRNAs in GFF3 format" ; schema1:url . kgr:mirbase.tissue-search a schema1:GraphicalInterface ; rdfs:label "Tissue Expression Search" ; dcterms:description "Search interface for finding microRNAs by tissue expression patterns" ; schema1:url . kgr:mirdb.predicted-targets a schema1:Product ; rdfs:label "miRDB Predicted Targets" ; dcterms:description "Compressed plain-text file of all predicted miRNA targets generated with the MirTarget prediction tool, covering the miRNAs and genes in the current miRDB release." ; schema1:url . kgr:mirdb.search a schema1:GraphicalInterface ; rdfs:label "miRDB Search Interface" ; dcterms:description "Web interface for searching predicted miRNA targets by miRNA name or gene, performing custom target prediction on user-provided sequences, and browsing functional annotations." ; schema1:url . kgr:mirgate.api a schema1:ProgrammingInterface ; rdfs:label "miRGate API" ; dcterms:description "REST API for programmatic access to miRNA-mRNA target prediction data" ; schema1:url . kgr:mirgate.portal a schema1:GraphicalInterface ; rdfs:label "miRGate Web Portal" ; dcterms:description "Web portal for querying and browsing miRNA-mRNA target predictions for human, mouse, and rat" ; schema1:url . kgr:mirgenedb.bulk a schema1:Product ; rdfs:label "MirGeneDB Bulk Data Archive" ; dcterms:description "Bulk download ZIP archives for all microRNA gene data across species." ; schema1:url . kgr:mirgenedb.covariance a schema1:Product ; rdfs:label "MirGeneDB Covariance Models" ; dcterms:description "Downloadable covariance models for more than 700 conserved microRNA families." ; schema1:url . kgr:mirgenedb.info a schema1:DocumentationProduct ; rdfs:label "MirGeneDB Information and Help" ; dcterms:description "Documentation and information about MirGeneDB nomenclature, annotation standards, and database usage." ; schema1:url . kgr:mirgenedb.portal a schema1:GraphicalInterface ; rdfs:label "MirGeneDB Web Portal" ; dcterms:description "Web interface for browsing, searching, and exploring curated microRNA gene entries and families across 114 metazoan species." ; schema1:url . kgr:mirgenedb.reads a schema1:Product ; rdfs:label "MirGeneDB Processed Read Data" ; dcterms:description "Downloadable processed FASTA files of all read data used in MirGeneDB annotations." ; schema1:url . kgr:mirgenedb.species_downloads a schema1:Product ; rdfs:label "MirGeneDB Species-Specific Downloads" ; dcterms:description "Downloadable FASTA, GFF, BED, and tabular files for microRNA genes from individual species." ; schema1:url . kgr:mirnao.kg-bioportal a schema1:GraphProduct ; rdfs:label "MIRNAO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of MicroRNA Ontology (MIRNAO), produced by KG-Bioportal from the BioPortal submission. The archive contains MIRNAO_nodes.tsv and MIRNAO_edges.tsv." ; schema1:url . kgr:mirnao.owl a schema1:OntologyProduct ; rdfs:label "mirnao.owl" ; dcterms:description "microRNA Ontology in OWL format" ; schema1:url . kgr:miro.kg-bioportal a schema1:GraphProduct ; rdfs:label "MIRO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Mosquito Insecticide Resistance (MIRO), produced by KG-Bioportal from the BioPortal submission. The archive contains MIRO_nodes.tsv and MIRO_edges.tsv." ; schema1:url . kgr:miro.obo a schema1:OntologyProduct ; rdfs:label "miro.obo" ; dcterms:description "Mosquito insecticide resistance in OBO format" ; schema1:url . kgr:miro.owl a schema1:OntologyProduct ; rdfs:label "miro.owl" ; dcterms:description "Mosquito insecticide resistance in OWL format" ; schema1:url . kgr:mirtarbase.archive a schema1:Product ; rdfs:label "miRTarBase Previous Releases Archive" ; dcterms:description "Archive of previous miRTarBase releases for reproducibility and historical comparisons." ; schema1:url . kgr:mirtarbase.mti a schema1:Product ; rdfs:label "miRTarBase Complete MTI Dataset" ; dcterms:description "Complete dataset of microRNA-target interactions (MTI) in CSV format containing all experimentally validated interactions." ; schema1:url . kgr:mirtarbase.portal a schema1:GraphicalInterface ; rdfs:label "miRTarBase Web Portal" ; dcterms:description "Web interface for searching and browsing experimentally validated microRNA-target interactions across multiple species." ; schema1:url . kgr:mirtarbase.species_mti a schema1:Product ; rdfs:label "miRTarBase Species-Specific MTI Files" ; dcterms:description "Species-specific microRNA-target interaction datasets in CSV format for human, mouse, rat, and 25+ other species." ; schema1:url . kgr:mirtarbase.strong_evidence a schema1:Product ; rdfs:label "miRTarBase Strong Evidence Datasets" ; dcterms:description "Curated datasets filtered for strong experimental evidence including reporter assays, western blot, qPCR, and CLIP-Seq data." ; schema1:url . kgr:mirtarbase.target_sites a schema1:Product ; rdfs:label "miRTarBase Target Sites Dataset" ; dcterms:description "Dataset of microRNA target sites with detailed binding site information in CSV format." ; schema1:url . kgr:mississippi-state-university-college-of-veterinary-medicine a "Organization" ; rdfs:label "Mississippi State University College of Veterinary Medicine" . kgr:mixs.kg-bioportal a schema1:GraphProduct ; rdfs:label "MIXS KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Minimal Information about any Sequence Ontology (MIXS), produced by KG-Bioportal from the BioPortal submission. The archive contains MIXS_nodes.tsv and MIXS_edges.tsv." ; schema1:url . kgr:mixs.model a schema1:DataModelProduct ; rdfs:label "MIxS OWL release" ; dcterms:description "OWL release of mixs" ; schema1:url . kgr:mmo.kg-bioportal a schema1:GraphProduct ; rdfs:label "MMO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Measurement Method Ontology (MMO), produced by KG-Bioportal from the BioPortal submission. The archive contains MMO_nodes.tsv and MMO_edges.tsv." ; schema1:url . kgr:mmo.obo a schema1:OntologyProduct ; rdfs:label "mmo.obo" ; dcterms:description "Measurement method ontology in OBO format" ; schema1:url . kgr:mmo.owl a schema1:OntologyProduct ; rdfs:label "mmo.owl" ; dcterms:description "Measurement method ontology in OWL format" ; schema1:url . kgr:mmrrc.api a schema1:ProgrammingInterface ; rdfs:label "MMRRC API" ; dcterms:description "MMRRC API providing programmatic access to strain catalog records and associated metadata for developers." ; schema1:url . kgr:mmrrc.catalog a schema1:GraphicalInterface ; rdfs:label "MMRRC Strain Catalog" ; dcterms:description "Searchable online catalog of MMRRC mouse strains, including allele, gene, mutation type, phenotype (MPT), and associated publication information." ; schema1:url . kgr:mmrrc.data-download a schema1:Product ; rdfs:label "MMRRC Data Download" ; dcterms:description "Bulk data download of the MMRRC strain catalog, providing strain identifiers, designations, genes, mutations, phenotype (MPT) annotations, and linked PubMed identifiers." ; schema1:url . kgr:mmusdv.kg-bioportal a schema1:GraphProduct ; rdfs:label "MMUSDV KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Mouse Developmental Stages (MMUSDV), produced by KG-Bioportal from the BioPortal submission. The archive contains MMUSDV_nodes.tsv and MMUSDV_edges.tsv." ; schema1:url . kgr:mmusdv.obo a schema1:OntologyProduct ; rdfs:label "mmusdv.obo" ; dcterms:description "Mouse Developmental Stages in OBO format" ; schema1:url . kgr:mmusdv.owl a schema1:OntologyProduct ; rdfs:label "mmusdv.owl" ; dcterms:description "Mouse Developmental Stages in OWL format" ; schema1:url . kgr:mo.kg-bioportal a schema1:GraphProduct ; rdfs:label "MO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Microarray and Gene Expression Data Ontology (MO), produced by KG-Bioportal from the BioPortal submission. The archive contains MO_nodes.tsv and MO_edges.tsv." ; schema1:url . kgr:mo.owl a schema1:OntologyProduct ; rdfs:label "mo.owl" ; dcterms:description "Microarray experimental conditions in OWL format" ; schema1:url . kgr:mod.obo a schema1:OntologyProduct ; rdfs:label "PSI-MOD.obo" ; dcterms:description "PSI-MOD Ontology, OBO format" ; schema1:url . kgr:mod.owl a schema1:OntologyProduct ; rdfs:label "PSI-MOD.owl" ; dcterms:description "PSI-MOD Ontology, OWL format" ; schema1:url . kgr:modomics.annotation a schema1:DocumentationProduct ; rdfs:label "MODOMICS Data Annotation Information" ; dcterms:description "Information about data annotation methods and standards used in MODOMICS." ; schema1:url . kgr:modomics.api a schema1:ProgrammingInterface ; rdfs:label "MODOMICS API" ; dcterms:description "Programmatic interface for accessing MODOMICS data." ; schema1:url . kgr:modomics.help a schema1:DocumentationProduct ; rdfs:label "MODOMICS Help Documentation" ; dcterms:description "User guide and documentation for using the MODOMICS database." ; schema1:url . kgr:modomics.images a schema1:Product ; rdfs:label "MODOMICS Modified Base Images" ; dcterms:description "Chemical structure images of modified bases for visualization and publication." ; schema1:url . kgr:modomics.mol2 a schema1:Product ; rdfs:label "MODOMICS Modified Base Structures" ; dcterms:description "Three-dimensional structures of modified bases in MOL2 format for computational chemistry applications." ; schema1:url . kgr:modomics.n3 a schema1:OntologyProduct ; rdfs:label "MODOMICS Ontology (N3)" ; dcterms:description "Ontology of base modifications in N3 format." ; schema1:url . kgr:modomics.owl a schema1:OntologyProduct ; rdfs:label "MODOMICS Ontology (OWL)" ; dcterms:description "Ontology of base modifications in OWL Lite format for semantic web applications." ; schema1:url . kgr:modomics.pdb a schema1:Product ; rdfs:label "MODOMICS PDB Modified Positions" ; dcterms:description "Three-dimensional structures of modified bases. Although listed as PDB files, the archive served at this URL currently contains the same MOL2 files as the MOL2 download." ; schema1:url . kgr:modomics.portal a schema1:GraphicalInterface ; rdfs:label "MODOMICS Web Portal" ; dcterms:description "Web interface for browsing RNA modifications, pathways, reactions, sequences, proteins, and associated diseases." ; schema1:url . kgr:modomics.positions a schema1:Product ; rdfs:label "MODOMICS Modified Positions List" ; dcterms:description "Comprehensive list of modified positions in RNA sequences." ; schema1:url . kgr:modomics.sdf a schema1:Product ; rdfs:label "MODOMICS SDF Files" ; dcterms:description "Structure-data files for modified bases in SDF format." ; schema1:url . kgr:modomics.search a schema1:GraphicalInterface ; rdfs:label "MODOMICS Advanced Search" ; dcterms:description "Advanced search interface for querying modifications, pathways, sequences, and proteins." ; schema1:url . kgr:monarchinitiative.api a schema1:ProgrammingInterface ; rdfs:label "Monarch API" ; dcterms:description "Monarch API for programmatic access to integrated data" ; schema1:url . kgr:monarchinitiative.kg a schema1:GraphProduct ; rdfs:label "Monarch Knowledge Graph" ; dcterms:description "Monarch Knowledge Graph integrating phenotype, disease, gene data across species" ; schema1:url . kgr:monarchinitiative.portal a schema1:GraphicalInterface ; rdfs:label "Monarch Web Portal" ; dcterms:description "Web interface for browsing genes, diseases, phenotypes across species" ; schema1:url . kgr:mondo.json a schema1:OntologyProduct ; rdfs:label "Mondo JSON edition" ; dcterms:description "Obographs serialization of mondo.owl." ; schema1:url . kgr:mondo.mondo-base.owl a schema1:OntologyProduct ; rdfs:label "Mondo Base Release" ; dcterms:description "The main ontology plus axioms connecting to select external ontologies, excluding the external ontologies themselves" ; schema1:url . kgr:mondo.mondo-simple.owl a schema1:OntologyProduct ; rdfs:label "Mondo Simple Release" ; dcterms:description "The main ontology classes and their hierarchies, without references to external terms." ; schema1:url . kgr:mondo.obo a schema1:OntologyProduct ; rdfs:label "Mondo OBO Format edition" ; dcterms:description "OBO serialization of mondo.owl." ; schema1:url . kgr:mondo.owl a schema1:OntologyProduct ; rdfs:label "Mondo OWL edition" ; dcterms:description "Complete ontology with merged imports." ; schema1:url . kgr:mop.kg-bioportal a schema1:GraphProduct ; rdfs:label "MOP KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Molecular Process Ontology (MOP), produced by KG-Bioportal from the BioPortal submission. The archive contains MOP_nodes.tsv and MOP_edges.tsv." ; schema1:url . kgr:mop.owl a schema1:OntologyProduct ; rdfs:label "Molecular Process Ontology" ; dcterms:description "Molecular Process Ontology" ; schema1:url . kgr:motifmap.portal a schema1:GraphicalInterface ; rdfs:label "MotifMap Web Portal" ; dcterms:description "Historical MotifMap web portal at UC Irvine for searching and browsing genome-wide predicted transcription factor binding site maps. The portal subdomain no longer resolves in DNS and the service is offline." ; schema1:url . kgr:motrpac.atac-seq-pipeline a schema1:ProcessProduct ; rdfs:label "MoTrPAC ATAC-seq QC and Analysis Pipeline" ; dcterms:description "MoTrPAC-specific implementation of the ENCODE ATAC-seq pipeline (v1.7.0), including configuration generation, QC flagging criteria, post-processing scripts for count matrix generation, and genome databases for human hg38 and rat rn6/rn8." ; schema1:url . kgr:motrpac.bic-qc a schema1:ProcessProduct ; rdfs:label "MotrpacBicQC" ; dcterms:description "R package providing primary and secondary QC/QA analysis functions for datasets generated by the MoTrPAC Metabolomics and Targeted/Untargeted Proteomics Chemical Analysis Sites, plus shared data objects used across MoTrPAC analyses." ; schema1:url . kgr:motrpac.code-repositories a schema1:DocumentationProduct ; rdfs:label "MoTrPAC Code Repositories" ; dcterms:description "MoTrPAC source-code and analysis repository index linked from the Data Hub" ; schema1:url . kgr:motrpac.data-access a schema1:DocumentationProduct ; rdfs:label "MoTrPAC Data Access Documentation" ; dcterms:description "Data access information for using MoTrPAC public and controlled-access data" ; schema1:url . kgr:motrpac.data-browser a schema1:GraphicalInterface ; rdfs:label "MoTrPAC Data Browser" ; dcterms:description "Interactive data browser for exploring and downloading MoTrPAC multi-omics datasets by tissue, ome, or assay type" ; schema1:url . kgr:motrpac.data-hub a schema1:GraphicalInterface ; rdfs:label "MoTrPAC Data Hub Portal" ; dcterms:description "Main portal for the MoTrPAC Data Hub providing access to data downloads, documentation, and visualization tools" ; schema1:url . kgr:motrpac.epigenomics a schema1:Product ; rdfs:label "Rat Young Adult Endurance Training - Epigenomics Data" ; dcterms:description "Epigenomics data including ATAC-seq and RRBS analyses, sample-level metadata, QC, and quantitative results across tissues" ; schema1:url . kgr:motrpac.metabolomics-targeted a schema1:Product ; rdfs:label "Rat Young Adult Endurance Training - Metabolomics (Targeted)" ; dcterms:description "Targeted metabolomics analyses, sample-level metadata, QC, and quantitative results across tissues" ; schema1:url . kgr:motrpac.metabolomics-untargeted a schema1:Product ; rdfs:label "Rat Young Adult Endurance Training - Metabolomics (Untargeted)" ; dcterms:description "Untargeted metabolomics analyses, sample-level metadata, QC, and quantitative results across tissues" ; schema1:url . kgr:motrpac.phenotype a schema1:Product ; rdfs:label "Rat Young Adult Endurance Training - Phenotype Data" ; dcterms:description "Phenotypic data from young adult rats (6-month old) that performed endurance exercise training" ; schema1:url . kgr:motrpac.proteomics-pipeline a schema1:ProcessProduct ; rdfs:label "MoTrPAC Proteomics Pipeline" ; dcterms:description "Cloud-based mass spectrometry proteomics data analysis pipeline, implemented in WDL and run via Cromwell/caper. Supports MS-GF+/PlexedPiper and MaxQuant based workflows for the global, phospho, acetyl, and ubiquityl proteomics datasets." ; schema1:url . kgr:motrpac.proteomics-targeted a schema1:Product ; rdfs:label "Rat Young Adult Endurance Training - Proteomics (Targeted/Immunoassay)" ; dcterms:description "Targeted proteomics immunoassay data with analyses, sample-level metadata, QC, and quantitative results across tissues" ; schema1:url . kgr:motrpac.proteomics-untargeted a schema1:Product ; rdfs:label "Rat Young Adult Endurance Training - Proteomics (Untargeted)" ; dcterms:description "Untargeted proteomics data including Acetyl Proteomics, Global Proteomics, Phosphoproteomics, and Protein Ubiquitination analyses across tissues" ; schema1:url . kgr:motrpac.publications a schema1:DocumentationProduct ; rdfs:label "MoTrPAC Publications" ; dcterms:description "Publication index for MoTrPAC marker, data-release, and analysis papers" ; schema1:url . kgr:motrpac.rat-training-6mo a schema1:ProcessProduct ; rdfs:label "MotrpacRatTraining6mo" ; dcterms:description "R package with the analysis code and convenience functions used for the MoTrPAC endurance exercise training study in 6-month-old rats, including differential analysis, clustering, and pathway enrichment of the multi-omic results." ; schema1:url . kgr:motrpac.rat-training-6mo-data a schema1:Product ; rdfs:label "MotrpacRatTraining6moData" ; dcterms:description "R data package distributing the processed data and analysis results for the MoTrPAC endurance exercise training study in 6-month-old rats, as versioned R objects that accompany the MotrpacRatTraining6mo analysis package." ; schema1:url . kgr:motrpac.rna-seq-pipeline a schema1:ProcessProduct ; rdfs:label "MoTrPAC RNA-seq Pipeline" ; dcterms:description "Harmonized RNA-seq data processing pipeline, implemented in the Workflow Description Language (WDL) and run on Google Cloud Platform via Cromwell/caper. Produces the transcriptomics quantitative results and QC metrics released through the Data Hub." ; schema1:url . kgr:motrpac.rna-splicing-pipeline a schema1:ProcessProduct ; rdfs:label "MoTrPAC RNA Splicing Pipeline" ; dcterms:description "Cluster-ready Snakemake pipeline for analyzing alternative splicing from bulk RNA-seq data, with conda-managed environments and configurable execution on compute clusters." ; schema1:url . kgr:motrpac.rrbs-pipeline a schema1:ProcessProduct ; rdfs:label "MoTrPAC RRBS Pipeline" ; dcterms:description "Reduced Representation Bisulfite Sequencing (RRBS) data processing pipeline, implemented in WDL and run on Google Cloud Platform via Cromwell/caper. Produces the DNA methylation portion of the epigenomics data." ; schema1:url . kgr:motrpac.search a schema1:GraphicalInterface ; rdfs:label "MoTrPAC Data Search" ; dcterms:description "Data search interface for finding molecular features and study results across MoTrPAC data releases" ; schema1:url . kgr:motrpac.transcriptomics a schema1:Product ; rdfs:label "Rat Young Adult Endurance Training - Transcriptomics Data" ; dcterms:description "RNA-seq analyses, sample-level metadata, QC, and quantitative results across tissues" ; schema1:url . kgr:motrpac.video-tutorials a schema1:DocumentationProduct ; rdfs:label "MoTrPAC Data Hub Video Tutorials" ; dcterms:description "Video tutorials demonstrating how to use the MoTrPAC Data Hub and access datasets" ; schema1:url . kgr:mp.json a schema1:OntologyProduct ; rdfs:label "MP (obographs JSON edition)" ; dcterms:description "For a description of the format see https://github.com/geneontology/obographs." ; schema1:url . kgr:mp.kg-bioportal a schema1:GraphProduct ; rdfs:label "MP KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Mammalian Phenotype Ontology (MP), produced by KG-Bioportal from the BioPortal submission. The archive contains MP_nodes.tsv and MP_edges.tsv." ; schema1:url . kgr:mp.mp-base.owl a schema1:OntologyProduct ; rdfs:label "MP Base Module" ; dcterms:description "The main ontology plus axioms connecting to select external ontologies, excluding axioms from the the external ontologies themselves." ; schema1:url . kgr:mp.obo a schema1:OntologyProduct ; rdfs:label "MP (OBO edition)" ; dcterms:description "A direct translation of the MP (OWL edition) into OBO format." ; schema1:url . kgr:mp.owl a schema1:OntologyProduct ; rdfs:label "MP (OWL edition)" ; dcterms:description "The main ontology in OWL. Contains all MP terms and links to other OBO ontologies." ; schema1:url . kgr:mpath.kg-bioportal a schema1:GraphProduct ; rdfs:label "MPATH KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Mouse Pathology Ontology (MPATH), produced by KG-Bioportal from the BioPortal submission. The archive contains MPATH_nodes.tsv and MPATH_edges.tsv." ; schema1:url . kgr:mpath.owl a schema1:OntologyProduct ; rdfs:label "mpath.owl" ; dcterms:description "Mouse pathology ontology in OWL format" ; schema1:url . kgr:mpio.kg-bioportal a schema1:GraphProduct ; rdfs:label "MPIO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Minimum PDDI Information Ontology (MPIO), produced by KG-Bioportal from the BioPortal submission. The archive contains MPIO_nodes.tsv and MPIO_edges.tsv." ; schema1:url . kgr:mpio.owl a schema1:OntologyProduct ; rdfs:label "mpio.owl" ; dcterms:description "Minimum PDDI Information Ontology in OWL format" ; schema1:url . kgr:mps-db.eveanalytics a schema1:GraphicalInterface ; rdfs:label "EveAnalytics" ; dcterms:description "EveAnalytics, the commercial successor to the MPS-Db (formerly the BioSystics Analytics Platform), aggregating microphysiology system data with linked preclinical and clinical databases. Operated under license from the University of Pittsburgh." ; schema1:url . kgr:mrbase.home a schema1:GraphicalInterface ; rdfs:label "MR-Base Website" ; dcterms:description "Web home and informational landing page for MR-Base platform components and publications" ; schema1:url . kgr:mrbase.mrinstruments a schema1:ProgrammingInterface ; rdfs:label "MRInstruments R Package" ; dcterms:description "MRInstruments R package containing curated instruments (top hits) across multiple GWAS and QTL sources for instrument selection" ; schema1:url . kgr:mrbase.paper.reproducibility a schema1:DocumentationProduct ; rdfs:label "MR-Base Methods Paper Reproducibility Code" ; dcterms:description "Methods paper analysis reproduction code repository for MR-Base platform publication" ; schema1:url . kgr:mro.kg-bioportal a schema1:GraphProduct ; rdfs:label "MHCRO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of MHC Restriction Ontology (MHCRO), produced by KG-Bioportal from the BioPortal submission. The archive contains MHCRO_nodes.tsv and MHCRO_edges.tsv." ; schema1:url . kgr:mro.owl a schema1:OntologyProduct ; rdfs:label "mro.owl" ; dcterms:description "MHC Restriction Ontology in OWL format" ; schema1:url . kgr:ms.kg-bioportal a schema1:GraphProduct ; rdfs:label "MS KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Mass Spectrometry Ontology (MS), produced by KG-Bioportal from the BioPortal submission. The archive contains MS_nodes.tsv and MS_edges.tsv." ; schema1:url . kgr:ms.obo a schema1:OntologyProduct ; rdfs:label "ms.obo" ; dcterms:description "Mass spectrometry ontology in OBO format" ; schema1:url . kgr:ms.owl a schema1:OntologyProduct ; rdfs:label "ms.owl" ; dcterms:description "Mass spectrometry ontology in OWL format" ; schema1:url . kgr:msigdb.browser a schema1:GraphicalInterface ; rdfs:label "MSigDB Web Browser" ; dcterms:description "Web interface for browsing, searching, and investigating gene sets across all MSigDB collections" ; schema1:url . kgr:msigdb.collections.human a schema1:DocumentationProduct ; rdfs:label "MSigDB Human Collections Documentation" ; dcterms:description "Human MSigDB collection descriptions and release-specific links for gene-symbol, Entrez, and JSON bundle downloads" ; schema1:url . kgr:msigdb.collections.mouse a schema1:DocumentationProduct ; rdfs:label "MSigDB Mouse Collections Documentation" ; dcterms:description "Mouse MSigDB collection descriptions and release-specific links for mouse gene set downloads" ; schema1:url . kgr:msigdb.gene_families a schema1:GraphicalInterface ; rdfs:label "MSigDB Gene Families Tool" ; dcterms:description "Tool for categorizing gene set members by gene families" ; schema1:url . kgr:msigdb.investigate a schema1:GraphicalInterface ; rdfs:label "MSigDB Investigate Tool" ; dcterms:description "Interactive tool for computing overlaps between user-provided gene sets and MSigDB collections" ; schema1:url . kgr:mskcc a "Organization" ; rdfs:label "Memorial Sloan Kettering Cancer Center" . kgr:mtbs.direct-download a schema1:Product ; rdfs:label "MTBS Direct Download" ; dcterms:description "MTBS Direct Download page providing fire-level and state/national burn severity and perimeter datasets plus web map services." ; schema1:url . kgr:mtbs.viewer a schema1:GraphicalInterface ; rdfs:label "MTBS Burn Severity Viewer" ; dcterms:description "Interactive burn severity viewer for visualizing, filtering, and downloading MTBS fire perimeter and burn severity data." ; schema1:url . kgr:multiomics-kp.code a schema1:ProcessProduct ; rdfs:label "Multiomics KP Source Code" ; dcterms:description "Source repository for deployment and integration code used by the Multiomics Provider team." ; schema1:url . kgr:multiomics-kp.docs a schema1:DocumentationProduct ; rdfs:label "Multiomics KP Documentation" ; dcterms:description "Team overview and interface links for the Multiomics Provider." ; schema1:url . kgr:mw.portal a schema1:GraphicalInterface ; rdfs:label "Metabolomics Workbench Portal" ; dcterms:description "Metabolomics Workbench portal for browsing studies, compounds, protocols, training material, and repository content." ; schema1:url . kgr:myaura.portal a schema1:GraphicalInterface ; rdfs:label "myAURA web application" ; dcterms:description "Public myAURA web application for exploring personalized epilepsy health-library content powered by the myAURA knowledge graph." ; schema1:url . kgr:myaura.workflow a schema1:ProcessProduct ; rdfs:label "myAURA data processing workflow" ; dcterms:description "Open-source data processing workflow for building the myAURA knowledge graph and supporting application data." ; schema1:url . kgr:mychem.code a schema1:ProcessProduct ; rdfs:label "MyChem.info Source Code" ; dcterms:description "Source code for the MyChem.info data parsers and web service, built with the BioThings SDK." ; schema1:url . kgr:mychem.docs a schema1:DocumentationProduct ; rdfs:label "MyChem.info Documentation" ; dcterms:description "MyChem.info documentation, covering the query syntax, the chem annotation endpoint, available fields and data sources." ; schema1:url . kgr:mychem.metadata a schema1:Product ; rdfs:label "MyChem.info Build Metadata" ; dcterms:description "JSON metadata for the current MyChem.info build, listing each data source with its version, license and license URL, plus record counts." ; schema1:url . kgr:mychem.python-client a schema1:Product ; rdfs:label "biothings_client Python Package" ; dcterms:description "biothings_client, the Python client package for the BioThings APIs, including MyChem.info." ; schema1:url . kgr:mydisease.docs a schema1:DocumentationProduct ; rdfs:label "MyDisease.info Documentation" ; dcterms:description "MyDisease.info documentation, covering the query syntax, the disease annotation endpoint, available fields and data sources." ; schema1:url . kgr:mydisease.metadata a schema1:Product ; rdfs:label "MyDisease.info Build Metadata" ; dcterms:description "JSON metadata for the current MyDisease.info build, listing each data source with its version, license URL and record counts." ; schema1:url . kgr:mygene.docs a schema1:DocumentationProduct ; rdfs:label "MyGene.info Documentation" ; dcterms:description "MyGene.info documentation, covering the gene query and annotation services, the available fields, data sources and client libraries." ; schema1:url . kgr:mygene.metadata a schema1:Product ; rdfs:label "MyGene.info Build Metadata" ; dcterms:description "JSON metadata for the current MyGene.info build, with build date and version, gene and species counts, and the version, license and download URL of each integrated source." ; schema1:url . kgr:mygene.python a schema1:Product ; rdfs:label "MyGene.info Python Client" ; dcterms:description "mygene, the Python client for the MyGene.info API, distributed on PyPI (version 3.2.2 when checked on 2026-10-04)." ; schema1:url . kgr:myvariant.docs a schema1:DocumentationProduct ; rdfs:label "MyVariant.info Documentation" ; dcterms:description "MyVariant.info documentation, covering the variant query and annotation services, HGVS identifiers, the available fields, data sources and client libraries." ; schema1:url . kgr:myvariant.metadata a schema1:Product ; rdfs:label "MyVariant.info Build Metadata" ; dcterms:description "JSON metadata for the current MyVariant.info build, with build date and version, variant counts per assembly, and the version, license and URL of each integrated source." ; schema1:url . kgr:myvariant.python a schema1:Product ; rdfs:label "myvariant Python Client" ; dcterms:description "myvariant, the Python client for the MyVariant.info API (version 1.0.0 on PyPI), with helpers for querying variants and building HGVS ids from VCF files." ; schema1:url . kgr:n2t.code a schema1:ProcessProduct ; rdfs:label "N2T Resolver Code" ; dcterms:description "Source code of the next-generation N2T Python scheme resolver, including the scheme configuration, released under the MIT License." ; schema1:url . kgr:n2t.docs a schema1:DocumentationProduct ; rdfs:label "N2T Documentation" ; dcterms:description "Documentation of N2T, covering the origins of the resolver, compact identifiers and the legacy N2T API and user interface." ; schema1:url . kgr:n2t.naan-registry a schema1:Product ; rdfs:label "ARK NAAN Registry" ; dcterms:description "Registry of ARK Name Assigning Authority Numbers (NAANs) and the organizations that hold them, formerly served by N2T and now published on GitHub Pages." ; schema1:url . kgr:n2t.prefixes a schema1:Product ; rdfs:label "N2T Full Prefix List" ; dcterms:description "Full YAML list of N2T prefix records with their names, redirect rules, test identifiers and probe URLs, combining records from the ARK NAAN registry, EZID shoulders, the shared identifiers.org prefix list and Prefix Commons. The file was last modified in July 2025." ; schema1:url . kgr:n2t.resolver a schema1:ProgrammingInterface ; rdfs:label "N2T Resolver" ; dcterms:description "The N2T resolver. Identifiers appended to https://n2t.net/ (for example https://n2t.net/pdb:2gc4 or https://n2t.net/ark:/88435/hq37vq534) are matched to a registered scheme and redirected to its resolver. An OpenAPI description of the resolution and scheme information endpoints is served at https://n2t.net/api." ; schema1:url . kgr:n2t.schemes a schema1:Product ; rdfs:label "N2T Registered Schemes" ; dcterms:description "JSON list of the identifier schemes and compact identifier prefixes currently registered with the N2T resolver (1,776 schemes when checked on 2026-10-05), from the service's scheme information endpoint." ; schema1:url . kgr:naaccr.data-dictionary a schema1:GraphicalInterface ; rdfs:label "NAACCR Data Dictionary" ; dcterms:description "Interactive NAACCR Data Dictionary providing browsable access to the standardized data items, codes, and definitions used in cancer registry records." ; schema1:url . kgr:naaccr.standards a schema1:DocumentationProduct ; rdfs:label "NAACCR Data Standards and Data Dictionary" ; dcterms:description "NAACCR Standards for Cancer Registries documentation and data standards version archive describing the data dictionary releases and record specifications." ; schema1:url . kgr:naics.landing a schema1:GraphicalInterface ; rdfs:label "NAICS reference page" ; dcterms:description "US Census Bureau guidance page describing the North American Industry Classification System, its hierarchical structure, and how business establishments are classified by their type of economic activity." ; schema1:url . kgr:nalt.browser a schema1:GraphicalInterface ; rdfs:label "NAL Thesaurus Browser" ; dcterms:description "The NAL Thesaurus (NALT) web browser for searching and exploring agricultural terms, their definitions, and their hierarchical and associative relationships." ; schema1:url . kgr:nalt.lod a schema1:ProgrammingInterface ; rdfs:label "NAL Thesaurus Linked Open Data" ; dcterms:description "The NAL Thesaurus published as SKOS linked open data, providing machine-readable access to NALT concepts and relationships for semantic alignment and integration." ; schema1:url . kgr:name-resolver.code a schema1:ProcessProduct ; rdfs:label "Name Resolver Source Code" ; dcterms:description "Python source code for the Name Resolver service, including the FastAPI application, Solr data-loading scripts for Babel synonym files, Docker deployment files and tests, released under the MIT license." ; schema1:url . kgr:name-resolver.docs a schema1:DocumentationProduct ; rdfs:label "Name Resolver Documentation" ; dcterms:description "Documentation for the Name Resolver, covering the API, the scoring algorithm used to rank matches, deployment instructions and an example Jupyter notebook." ; schema1:url . kgr:namsnetwork.portal a schema1:GraphicalInterface ; rdfs:label "NAMs Network Portal" ; dcterms:description "NAMs Network web interface for exploring and searching New Approach Methodologies for chemical and material safety assessment" ; schema1:url . kgr:nanopublications.docs a schema1:DocumentationProduct ; rdfs:label "Nanopublications Documentation" ; dcterms:description "Guides, examples, and getting-started material for creating, publishing, and querying nanopublications." ; schema1:url . kgr:nanopublications.portal a schema1:GraphicalInterface ; rdfs:label "Nanopublications Browser" ; dcterms:description "Web interface for browsing and searching nanopublications" ; schema1:url . kgr:nanopublications.servers a schema1:ProgrammingInterface ; rdfs:label "Nanopublication Server Network" ; dcterms:description "Decentralized server network for storing and retrieving nanopublications" ; schema1:url . kgr:nasa-gesdisc-kg.sparql a schema1:ProgrammingInterface ; rdfs:label "NASA-GESDISC-KG SPARQL" ; dcterms:description "SPARQL endpoint for NASA-GESDISC-KG" ; schema1:url . kgr:nasa-gesdisc-kg.tpf a schema1:ProgrammingInterface ; rdfs:label "NASA-GESDISC-KG TPF" ; dcterms:description "Triple Pattern Fragments endpoint for NASA-GESDISC-KG" ; schema1:url . kgr:nasa-gesdisc.archive a schema1:Product ; rdfs:label "GES DISC Data Archive" ; dcterms:description "The GES DISC data archive, providing discovery, access, and download of NASA Earth science datasets (atmospheric composition, water and energy cycles, precipitation, and atmospheric dynamics) through the dataset catalog, OPeNDAP, and Earthdata access services and APIs." ; schema1:url . kgr:nasa-osdr.api a schema1:ProgrammingInterface ; rdfs:label "NASA OSDR Biodata API" ; dcterms:description "OSDR Biodata API providing programmatic access to NASA OSDR/GeneLab study metadata and omics data." ; schema1:url . kgr:nasa-osdr.repository a schema1:GraphicalInterface ; rdfs:label "NASA OSDR Data Repository" ; dcterms:description "Web-based data repository for browsing and downloading NASA OSDR/GeneLab spaceflight and space-relevant biological and omics study datasets and their metadata." ; schema1:url . kgr:national-directory-mental-health-facilities.samhsa-page a schema1:GraphicalInterface ; rdfs:label "SAMHSA National Directory of Mental Health Treatment Facilities page" ; dcterms:description "The SAMHSA report page for the National Directory of Mental Health Treatment Facilities, providing the directory documents and downloadable facility listings." ; schema1:url . kgr:naturalis a "Organization" ; rdfs:label "Naturalis Biodiversity Center" . kgr:nbo.kg-bioportal a schema1:GraphProduct ; rdfs:label "NBO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Neuro Behavior Ontology (NBO), produced by KG-Bioportal from the BioPortal submission. The archive contains NBO_nodes.tsv and NBO_edges.tsv." ; schema1:url . kgr:nbo.owl a schema1:OntologyProduct ; rdfs:label "nbo.owl" ; dcterms:description "Neuro Behavior Ontology in OWL format" ; schema1:url . kgr:ncats a "Organization" ; rdfs:label "NCATS" . kgr:ncats-rampdb a "Organization" ; rdfs:label "NCATS RaMP-DB Team" . kgr:ncatsgardkg.code a schema1:ProcessProduct ; rdfs:label "NCATS GARD KG Source Repository" ; dcterms:description "RD-Clust source repository implementing NCATS GARD KG clustering and analysis workflows." ; schema1:url . kgr:ncatsgardkg.raw-data a schema1:Product ; rdfs:label "NCATS GARD KG Raw Data Directory" ; dcterms:description "Repository subdirectory containing raw datasets used to construct the NCATS GARD KG workflow." ; schema1:url . kgr:ncbi.datasets-api a schema1:DocumentationProduct ; rdfs:label "NCBI Datasets API" ; dcterms:description "NCBI Datasets API documentation for genome, gene, taxonomy, virus, and BioSample programmatic access." ; schema1:url . kgr:ncbi.gc a schema1:DataModelProduct ; rdfs:label "NCBI Genetic Codes" ; dcterms:description "NCBI Genetic Codes tables summarizing translation tables used in GenBank and the NCBI taxonomy." ; schema1:url . kgr:ncbigene.gene2accession a schema1:MappingProduct ; rdfs:label "Gene to Accession Mapping" ; dcterms:description "Gene to accession mapping data providing links between gene records and nucleotide/protein sequence accessions" ; schema1:url . kgr:ncbigene.gene_group a schema1:Product ; rdfs:label "Gene Group Data" ; dcterms:description "Gene group information defining functional gene families and clusters" ; schema1:url . kgr:ncbigene.gene_history a schema1:Product ; rdfs:label "Gene History Data" ; dcterms:description "Gene history data tracking changes and updates to gene records over time" ; schema1:url . kgr:ncbigene.gene_info a schema1:Product ; rdfs:label "Gene Information" ; dcterms:description "Comprehensive gene information including symbols, names, locations, and other metadata" ; schema1:url . kgr:ncbigene.gene_neighbors a schema1:Product ; rdfs:label "Gene Neighbors Data" ; dcterms:description "Gene neighbor information showing genomic proximity relationships" ; schema1:url . kgr:ncbigene.gene_orthologs a schema1:Product ; rdfs:label "Gene Orthologs Data" ; dcterms:description "Gene ortholog information showing evolutionary relationships between genes across species" ; schema1:url . kgr:ncbigene.gene_summary a schema1:Product ; rdfs:label "Gene Summary Data" ; dcterms:description "Gene summary information providing brief descriptions of gene function" ; schema1:url . kgr:ncbigene.search a schema1:GraphicalInterface ; rdfs:label "NCBI Gene Search Interface" ; dcterms:description "Web-based search and browsing interface for the NCBI Gene database" ; schema1:url . kgr:ncbitaxon.json a schema1:OntologyProduct ; rdfs:label "OBOGraphs JSON version of Main release" ; dcterms:description "OBOGraphs JSON version of Main release" ; schema1:url . kgr:ncbitaxon.obo a schema1:OntologyProduct ; rdfs:label "OBO Format version of Main release" ; dcterms:description "OBO Format version of Main release" ; schema1:url . kgr:ncbitaxon.owl a schema1:OntologyProduct ; rdfs:label "Main release" ; dcterms:description "Main release" ; schema1:url . kgr:ncbitaxon.subsets.taxslim-disjoint-over-in-taxon.owl a schema1:OntologyProduct ; rdfs:label "taxslim disjointness axioms" ; dcterms:description "taxslim disjointness axioms" ; schema1:url . kgr:ncbitaxon.subsets.taxslim.owl a schema1:OntologyProduct ; rdfs:label "taxslim" ; dcterms:description "taxslim" ; schema1:url . kgr:nci60.doseresp a schema1:Product ; rdfs:label "NCI-60 Concentration/Response Data" ; dcterms:description "Full concentration/response (percent growth) data for public NSC compounds tested in the five-dose NCI-60 assay, per experiment (July 2026 release; about 2.37 GB uncompressed)." ; schema1:url . kgr:nci60.download-docs a schema1:DocumentationProduct ; rdfs:label "NCI-60 Growth Inhibition Data Documentation" ; dcterms:description "NCI DTP Data wiki page for the NCI-60 growth inhibition download, with background on the screen, file sizes, column definitions and links to previous releases." ; schema1:url . kgr:nci60.gi50 a schema1:Product ; rdfs:label "NCI-60 GI50 Data" ; dcterms:description "GI50 (50% growth inhibition) values for public NSC compounds across NCI-60 and other cell lines, one row per experiment, NSC, concentration range and cell line (DOWNLOAD NCI CELL LINE DATA, July 2026 release; about 401 MB uncompressed)." ; schema1:url . kgr:nci60.ic50 a schema1:Product ; rdfs:label "NCI-60 IC50 Data" ; dcterms:description "IC50 values for public NSC compounds across NCI-60 and other cell lines, per experiment (July 2026 release; about 401 MB uncompressed)." ; schema1:url . kgr:nci60.lc50 a schema1:Product ; rdfs:label "NCI-60 LC50 Data" ; dcterms:description "LC50 (50% lethal concentration) values for public NSC compounds across NCI-60 and other cell lines, per experiment (July 2026 release; about 391 MB uncompressed)." ; schema1:url . kgr:nci60.oneconc a schema1:Product ; rdfs:label "NCI-60 One-Dose Prescreen Data" ; dcterms:description "One-concentration (prescreen) percent growth data for public NSC compounds across the NCI-60 panel (July 2026 release; about 470 MB uncompressed)." ; schema1:url . kgr:nci60.portal a schema1:GraphicalInterface ; rdfs:label "NCI-60 Screen Web Pages" ; dcterms:description "DTP web pages describing the NCI-60 screen, its cell lines, screening methodology and compound submission process." ; schema1:url . kgr:nci60.public-nscs a schema1:Product ; rdfs:label "NCI-60 Public NSC List" ; dcterms:description "List of public NSC compound numbers covered by the NCI-60 data release." ; schema1:url . kgr:nci60.tgi a schema1:Product ; rdfs:label "NCI-60 TGI Data" ; dcterms:description "TGI (total growth inhibition) values for public NSC compounds across NCI-60 and other cell lines, per experiment (July 2026 release; about 396 MB uncompressed)." ; schema1:url . kgr:ncipidkg.sparql a schema1:ProgrammingInterface ; rdfs:label "NCI-PID 2.0 KG SPARQL" ; dcterms:description "SPARQL endpoint for NCI-PID 2.0 KG" ; schema1:url . kgr:ncipidkg.tpf a schema1:ProgrammingInterface ; rdfs:label "NCI-PID 2.0 KG TPF" ; dcterms:description "Triple Pattern Fragments endpoint for NCI-PID 2.0 KG" ; schema1:url . kgr:ncit.obo a schema1:OntologyProduct ; rdfs:label "NCIt OBO Edition OBO format" ; dcterms:description "NCIt OBO Edition OBO format" ; schema1:url . kgr:ncit.owl a schema1:OntologyProduct ; rdfs:label "NCIt OBO Edition OWL format" ; dcterms:description "A direct transformation of the standard NCIt content using OBO-style term and ontology IRIs and annotation properties." ; schema1:url . kgr:ncro.dev.ncro.owl a schema1:OntologyProduct ; rdfs:label "NCRO development version" ; dcterms:description "NCRO development version" ; schema1:url . kgr:ncro.kg-bioportal a schema1:GraphProduct ; rdfs:label "NCRO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Non-coding RNA Ontology (NCRO), produced by KG-Bioportal from the BioPortal submission. The archive contains NCRO_nodes.tsv and NCRO_edges.tsv." ; schema1:url . kgr:ndcd.excel a schema1:Product ; rdfs:label "NDC Database Excel File" ; dcterms:description "Downloadable NDC database files (product.xls and package.xls) containing finished drug product information. Despite the .xls extension, the files are tab-delimited text." ; schema1:url . kgr:ndcd.search a schema1:GraphicalInterface ; rdfs:label "NDC Directory Search" ; dcterms:description "Web-based search interface for the NDC Directory allowing users to search and browse National Drug Code information" ; schema1:url . kgr:ndcd.text a schema1:Product ; rdfs:label "NDC Database Text File" ; dcterms:description "Downloadable database file in text format containing finished drug product information, updated daily" ; schema1:url . kgr:nde.sparql a schema1:ProgrammingInterface ; rdfs:label "NIAID Data Ecosystem KG SPARQL" ; dcterms:description "SPARQL endpoint for NIAID Data Ecosystem KG" ; schema1:url . kgr:nde.tpf a schema1:ProgrammingInterface ; rdfs:label "NIAID Data Ecosystem KG TPF" ; dcterms:description "Triple Pattern Fragments endpoint for NIAID Data Ecosystem KG" ; schema1:url . kgr:ndfrt.kg-bioportal a schema1:GraphProduct ; rdfs:label "VANDF KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Veterans Health Administration National Drug File (VANDF), produced by KG-Bioportal from the BioPortal submission. The archive contains VANDF_nodes.tsv and VANDF_edges.tsv." ; schema1:url . kgr:netpath.pathways a schema1:Product ; rdfs:label "NetPath Pathway Data" ; dcterms:description "Manually curated human signal transduction pathway data, available in BioPAX, PSI-MI, and SBML community standard formats." ; schema1:url . kgr:ngbo.kg-bioportal a schema1:GraphProduct ; rdfs:label "NGBO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Next Generation Biobanking Ontology (NGBO), produced by KG-Bioportal from the BioPortal submission. The archive contains NGBO_nodes.tsv and NGBO_edges.tsv." ; schema1:url . kgr:ngbo.owl a schema1:OntologyProduct ; rdfs:label "ngbo.owl" ; dcterms:description "Next Generation Biobanking Ontology in OWL format" ; schema1:url . kgr:ngdc.bioproject a schema1:GraphicalInterface ; rdfs:label "NGDC BioProject" ; dcterms:description "NGDC BioProject database of descriptive metadata for research projects whose data are deposited in NGDC archives." ; schema1:url . kgr:ngdc.biosample a schema1:GraphicalInterface ; rdfs:label "NGDC BioSample" ; dcterms:description "NGDC BioSample database of descriptive metadata for biological samples whose data are deposited in NGDC archives." ; schema1:url . kgr:ngdc.databasecommons a schema1:GraphicalInterface ; rdfs:label "Database Commons" ; dcterms:description "Database Commons, a curated catalog of biological databases worldwide, with descriptions, categories, publications and citation-based rankings." ; schema1:url . kgr:ngdc.downloads a schema1:Product ; rdfs:label "NGDC Download Server" ; dcterms:description "NGDC bulk download server, a directory tree of data files from GSA, GSA-Human, GWH, GVM, OMIX and many hosted databases." ; schema1:url . kgr:ngdc.gsa a schema1:GraphicalInterface ; rdfs:label "Genome Sequence Archive (GSA)" ; dcterms:description "Genome Sequence Archive (GSA), a public archive of raw sequence reads from high-throughput sequencing, with web search, browse and submission. GSA is a Global Core Biodata Resource." ; schema1:url . kgr:ngdc.gsa-docs a schema1:DocumentationProduct ; rdfs:label "GSA Documentation" ; dcterms:description "Documentation for the Genome Sequence Archive, including submission guides, metadata standards and data access instructions." ; schema1:url . kgr:ngdc.gsa-human a schema1:GraphicalInterface ; rdfs:label "GSA for Human (GSA-Human)" ; dcterms:description "GSA-Human, the controlled-access branch of the Genome Sequence Archive for human genetic data, with data access requests reviewed by data access committees." ; schema1:url . kgr:ngdc.gvm a schema1:GraphicalInterface ; rdfs:label "Genome Variation Map (GVM)" ; dcterms:description "Genome Variation Map (GVM), a database of genomic variants across human, animal and plant species, with variant annotations and downloads." ; schema1:url . kgr:ngdc.gwh a schema1:GraphicalInterface ; rdfs:label "Genome Warehouse (GWH)" ; dcterms:description "Genome Warehouse (GWH), a repository of genome assemblies and their annotations, with search, browse and submission." ; schema1:url . kgr:ngdc.portal a schema1:GraphicalInterface ; rdfs:label "NGDC Portal" ; dcterms:description "Main NGDC web portal, linking to all NGDC databases, tools and submission services, with cross-database search." ; schema1:url . kgr:nhpn.geojson a schema1:Product ; rdfs:label "NHPN GeoJSON edition" ; dcterms:description "NHPN version 14.05 distributed as zipped GeoJSON, containing the geospatial line features for the national highway network." ; schema1:url . kgr:nhpn.shp a schema1:Product ; rdfs:label "NHPN Shapefile edition" ; dcterms:description "NHPN version 14.05 distributed as a zipped Esri Shapefile (a bundle of several files), containing the geospatial line features for the national highway network." ; schema1:url . kgr:nibrs.cde a schema1:GraphicalInterface ; rdfs:label "FBI Crime Data Explorer" ; dcterms:description "The FBI Crime Data Explorer (CDE) is the public platform for accessing, exploring, and downloading NIBRS incident-level crime data reported by law enforcement agencies across the United States." ; schema1:url . kgr:nif_cell.ttl a schema1:OntologyProduct ; rdfs:label "NIF Cell (Turtle)" ; dcterms:description "NIF Cell ontology in Turtle format (SciCrunch NIF-Ontology repository)" ; schema1:url . kgr:nif_dysfunction.ttl a schema1:OntologyProduct ; rdfs:label "NIF-Dysfunction.ttl" ; dcterms:description "NIF-Dysfunction (formerly BIRNLex-Disease) ontology in RDF Turtle format, archived in the SciCrunch NIF-Ontology repository." ; schema1:url . kgr:nif_grossanatomy.ttl a schema1:OntologyProduct ; rdfs:label "NIF Gross Anatomy ontology (Turtle)" ; dcterms:description "Turtle (TTL) release of the NIF-GrossAnatomy ontology, preserved in the SciCrunch NIF-Ontology repository. This ontology is obsolete and replaced by UBERON." ; schema1:url . kgr:nifc.fire-perimeters a schema1:Product ; rdfs:label "WFIGS Current Interagency Fire Perimeters" ; dcterms:description "WFIGS current interagency fire perimeters, providing polygon geometries for active and recent wildfire incidents across the United States, downloadable in multiple geospatial formats and available as a hosted feature service." ; schema1:url . kgr:nifc.portal a schema1:GraphicalInterface ; rdfs:label "NIFC Open Data Portal" ; dcterms:description "NIFC Open Data portal interface for searching, browsing, previewing on maps, and downloading wildfire geospatial datasets and feature layers." ; schema1:url . kgr:nih-era.assist a schema1:GraphicalInterface ; rdfs:label "eRA ASSIST" ; dcterms:description "ASSIST (Application Submission System and Interface for Submission Tracking), the login-protected eRA module for preparing and submitting grant applications to NIH and other agencies." ; schema1:url . kgr:nih-era.commons a schema1:GraphicalInterface ; rdfs:label "eRA Commons" ; dcterms:description "eRA Commons, the login-protected web interface where applicants, grant recipients, signing officials and reviewers track applications, view review outcomes and notices of award, and submit progress reports, invention reports and closeout documents." ; schema1:url . kgr:nih-era.help a schema1:DocumentationProduct ; rdfs:label "eRA Help and Tutorials" ; dcterms:description "eRA help and tutorials, including online help for eRA Commons, ASSIST and the other eRA modules, video tutorials and FAQs." ; schema1:url . kgr:nij.publications a schema1:Product ; rdfs:label "NIJ Publications and Data" ; dcterms:description "NIJ publications and data resources, including research reports and datasets on firearms violence, victimization, and community safety." ; schema1:url . kgr:nikg.sparql a schema1:ProgrammingInterface ; rdfs:label "Neighborhood Information KG SPARQL" ; dcterms:description "SPARQL endpoint for Neighborhood Information KG" ; schema1:url . kgr:nikg.tpf a schema1:ProgrammingInterface ; rdfs:label "Neighborhood Information KG TPF" ; dcterms:description "Triple Pattern Fragments endpoint for Neighborhood Information KG" ; schema1:url . kgr:nlm-ckn.etl a schema1:ProcessProduct ; rdfs:label "nlm-ckn-etl" ; dcterms:description "The NLM-CKN ETL pipeline, which produces the knowledge graph as an ArangoDB archive from single-cell genomics results and source ontologies. It combines a data processing pipeline (DataFetcher, DataTransformer, TupleWriters, ResultsGraphBuilder) with an ontology processing pipeline (OntologyDownloader, OntologyGraphBuilder), then selects a relevant induced subgraph." ; schema1:url . kgr:nlm-ckn.harvester a schema1:ProcessProduct ; rdfs:label "cellxgene-harvester" ; dcterms:description "The cellxgene-harvester package, which harvests, filters, and counts normal cells from the CELLxGENE Census using ontology-based filtering (UBERON tissue, PATO/MONDO disease, HsapDv age) to produce per-organ input datasets for the quality-control workflow." ; schema1:url . kgr:nlm-ckn.nsforest-qc a schema1:ProcessProduct ; rdfs:label "sc-nsforest-qc-nf" ; dcterms:description "The sc-nsforest-qc-nf Nextflow workflow, which runs the scsilhouette package and the JCVI NSForest method over each harvested dataset to produce marker genes, F-scores, and silhouette quality metrics consumed downstream by the ETL pipeline." ; schema1:url . kgr:nlm-ckn.schema a schema1:DataModelProduct ; rdfs:label "nlm-ckn-schema" ; dcterms:description "LinkML data model (schema) for cell phenotypes and the biological entities they relate to, defining the node and edge types used in the NLM-CKN knowledge graph." ; schema1:url . kgr:nlm-ckn.scsilhouette a schema1:ProcessProduct ; rdfs:label "scsilhouette" ; dcterms:description "The scsilhouette Python package, part of the NLM-CKN quality-control workflow. Together with NSForest F-scores it computes silhouette and summary quality metrics that characterize the single-cell clusters used in the knowledgebase." ; schema1:url . kgr:nlm-ckn.ui a schema1:GraphicalInterface ; rdfs:label "nlm-ckn-ui" ; dcterms:description "The NLM-CKN web application, a Django and React interface that loads a pre-built ArangoDB dataset produced by the ETL pipeline and lets researchers query, visualize, and explore the cell knowledge graph." ; schema1:url . kgr:nlm.portal a schema1:DocumentationProduct ; rdfs:label "NLM Web Portal" ; dcterms:description "NLM public homepage and organizational entry point for literature, terminology, clinical, and informatics resources." ; schema1:url . kgr:nmr.kg-bioportal a schema1:GraphProduct ; rdfs:label "NMR KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of NMR-Controlled Vocabulary (NMR), produced by KG-Bioportal from the BioPortal submission. The archive contains NMR_nodes.tsv and NMR_edges.tsv." ; schema1:url . kgr:nmr.owl a schema1:OntologyProduct ; rdfs:label "nmr.owl" ; dcterms:description "NMR-instrument specific component of metabolomics investigations in OWL format" ; schema1:url . kgr:noaa-hms.fire-points a schema1:Product ; rdfs:label "HMS Fire Points" ; dcterms:description "Daily HMS analyst-reviewed fire detection points over North America derived from geostationary and polar-orbiting satellite observations, provided as Shapefile and KML files via NOAA NESDIS data distribution." ; schema1:url . kgr:noaa-hms.smoke-polygons a schema1:Product ; rdfs:label "HMS Smoke Polygons" ; dcterms:description "Daily HMS smoke plume polygons over North America, classified by smoke density, provided as Shapefile and KML files via NOAA NESDIS data distribution." ; schema1:url . kgr:noaa-ncei.data-search a schema1:GraphicalInterface ; rdfs:label "NCEI Data Search" ; dcterms:description "Web portal for searching, browsing, and discovering NCEI's archived environmental datasets across climate, weather, ocean, and geophysical domains." ; schema1:url . kgr:noaa-ncei.ibtracs a schema1:Product ; rdfs:label "International Best Track Archive (IBTrACS)" ; dcterms:description "The International Best Track Archive for Climate Stewardship (IBTrACS), a unified global collection of historical tropical cyclone (hurricane) track and intensity data." ; schema1:url . kgr:noaa-ncei.storm-events a schema1:Product ; rdfs:label "NOAA Storm Events Database" ; dcterms:description "The Storm Events Database documenting the occurrence of storms and other significant weather phenomena in the United States, with downloadable records and bulk CSV files." ; schema1:url . kgr:noaa-nwm.landing a schema1:GraphicalInterface ; rdfs:label "NOAA National Water Model landing page" ; dcterms:description "NOAA National Water Center landing page describing the National Water Model, its forecast configurations, and access options." ; schema1:url . kgr:node-normalizer.code a schema1:ProcessProduct ; rdfs:label "NodeNormalization Source Repository" ; dcterms:description "Source code for the Node Normalization service, which loads Babel compendia into Redis and serves them through a FastAPI application." ; schema1:url . kgr:node-normalizer.docs a schema1:DocumentationProduct ; rdfs:label "Node Normalization API Documentation" ; dcterms:description "API documentation for Node Normalization, describing each endpoint, conflation options and response structure." ; schema1:url . kgr:node-omics.browse a schema1:GraphicalInterface ; rdfs:label "NODE Browse" ; dcterms:description "NODE browse and search interface over public and restricted projects, experiments, samples and analyses, with lookups for taxonomy, biome, disease and platform." ; schema1:url . kgr:node-omics.help a schema1:DocumentationProduct ; rdfs:label "NODE Help Documentation" ; dcterms:description "NODE help documentation covering registration, metadata and raw data submission, data security levels, HTTP and SFTP download, and how to cite NODE accessions." ; schema1:url . kgr:node-omics.portal a schema1:GraphicalInterface ; rdfs:label "NODE Web Portal" ; dcterms:description "NODE web portal for submitting, searching, viewing and downloading omics projects, experiments, samples, runs and analyses. Public data can be downloaded over HTTP from each detail page." ; schema1:url . kgr:node-omics.sftp a schema1:Product ; rdfs:label "NODE SFTP Download" ; dcterms:description "SFTP service for bulk download of NODE data files (raw reads and analysis files), at host fms.biosino.org on port 44398, using a NODE account (email and password). Upload uses port 44397." ; schema1:url . kgr:node-omics.statistics a schema1:GraphicalInterface ; rdfs:label "NODE Statistics" ; dcterms:description "NODE statistics pages summarizing data volume, data flow, popular datasets and linked publications." ; schema1:url . kgr:nomen.kg-bioportal a schema1:GraphProduct ; rdfs:label "NOMEN KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of NOMEN - A nomenclatural ontology for biological names (NOMEN), produced by KG-Bioportal from the BioPortal submission. The archive contains NOMEN_nodes.tsv and NOMEN_edges.tsv." ; schema1:url . kgr:nomen.owl a schema1:OntologyProduct ; rdfs:label "NOMEN" ; dcterms:description "core ontology" ; schema1:url . kgr:noncode.blast a schema1:GraphicalInterface ; rdfs:label "BLAST Similarity Search" ; dcterms:description "Find similar sequences using BLAST alignment" ; schema1:url . kgr:noncode.browse a schema1:GraphicalInterface ; rdfs:label "Browse NONCODE" ; dcterms:description "Browse lncRNAs by species and RNA type" ; schema1:url . kgr:noncode.conservation a schema1:GraphicalInterface ; rdfs:label "Conservation Analysis" ; dcterms:description "Cross-species conservation analysis for plant lncRNAs" ; schema1:url . kgr:noncode.disease a schema1:GraphicalInterface ; rdfs:label "Disease Information" ; dcterms:description "Browse disease-related lncRNA information, especially cancer associations" ; schema1:url . kgr:noncode.download a schema1:Product ; rdfs:label "Download Data" ; dcterms:description "Download complete lncRNA annotations and sequences" ; schema1:url . kgr:noncode.function a schema1:GraphicalInterface ; rdfs:label "Function Prediction" ; dcterms:description "Predicted functions for plant lncRNAs based on co-expression analysis" ; schema1:url . kgr:noncode.genome-browser a schema1:GraphicalInterface ; rdfs:label "Genome Browser" ; dcterms:description "View transcript locations in genomic context (human hg38)" ; schema1:url . kgr:noncode.id-conversion a schema1:GraphicalInterface ; rdfs:label "ID Conversion Tool" ; dcterms:description "Convert between NONCODE IDs and other database identifiers (Ensembl, RefSeq, etc.)" ; schema1:url . kgr:noncode.portal a schema1:GraphicalInterface ; rdfs:label "NONCODE Web Portal" ; dcterms:description "Main web interface for searching, browsing, and analyzing lncRNA annotations across 39 species" ; schema1:url . kgr:noncode.search a schema1:GraphicalInterface ; rdfs:label "Search Gene/Transcript" ; dcterms:description "Search for specific genes or transcripts by identifier or keywords" ; schema1:url . kgr:npass.portal a schema1:GraphicalInterface ; rdfs:label "NPASS Portal" ; dcterms:description "Official NPASS portal for searching and browsing natural products, source organisms, targets, activity records, and associated ADME-tox data." ; schema1:url . kgr:npm.website a schema1:GraphicalInterface ; rdfs:label "npm registry website" ; dcterms:description "Web interface and public registry for browsing and retrieving npm packages" ; schema1:url . kgr:npo.kg-bioportal a schema1:GraphProduct ; rdfs:label "NPOKB KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Neuron Phenotype Ontology (NPOKB), produced by KG-Bioportal from the BioPortal submission. The archive contains NPOKB_nodes.tsv and NPOKB_edges.tsv." ; schema1:url . kgr:nsduh.samhsa-page a schema1:GraphicalInterface ; rdfs:label "SAMHSA NSDUH data page" ; dcterms:description "The SAMHSA NSDUH landing page, providing survey documentation, methodology, questionnaires, and access to public-use data files and reports." ; schema1:url . kgr:nsides.awaredx a schema1:Product ; rdfs:label "AwareDX" ; dcterms:description "Drug safety signals with differential risk between men and women, covering 20,817 adverse drug effects with sex-specific risks" ; schema1:url . kgr:nsides.kidsides a schema1:Product ; rdfs:label "KidSIDES" ; dcterms:description "Pediatric drug safety signals across developmental phases, covering adverse events specific to children" ; schema1:url . kgr:nsides.kidsides.code a schema1:ProcessProduct ; rdfs:label "KidSIDES Code" ; dcterms:description "Code repository for KidSIDES pediatric adverse drug event database study" ; schema1:url . kgr:nsides.onsides a schema1:Product ; rdfs:label "OnSIDES" ; dcterms:description "Adverse drug events extracted from FDA drug labels using fine-tuned PubMedBERT, covering 3.6M+ drug-ADE pairs for 2,793 drug ingredients from 46,686 labels" ; schema1:url . kgr:nsides.onsides.code a schema1:ProcessProduct ; rdfs:label "OnSIDES Code" ; dcterms:description "Code repository for OnSIDES model training and data generation" ; schema1:url . kgr:nsides.pdsportal a schema1:GraphicalInterface ; rdfs:label "PDSPortal" ; dcterms:description "Interactive RShiny web portal for browsing pediatric drug safety signals" ; schema1:url . kgr:nsrr.cross-dataset-mapping a schema1:MappingProduct ; rdfs:label "NSRR Cross-Dataset Mapping" ; dcterms:description "Version-controlled NSRR canonical data dictionary and mapping files linking variables across NSRR datasets." ; schema1:url . kgr:nsrr.data-request a schema1:ProcessProduct ; rdfs:label "NSRR Data Access Request" ; dcterms:description "Online data access request process. Users sign in, complete a request describing the intended use, and agree to the dataset's Data Access and Use Agreement; the NSRR team reviews requests, which can take up to two weeks. This example URL starts a request for the Sleep Heart Health Study." ; schema1:url . kgr:nsrr.dataset-discovery a schema1:GraphicalInterface ; rdfs:label "NSRR Dataset Discovery" ; dcterms:description "NSRR Dataset Discovery tool (cohort matrix) for finding datasets by keyword or data modality, including subject type, sleep study data category and signal channel labels." ; schema1:url . kgr:nsrr.datasets a schema1:Product ; rdfs:label "NSRR Datasets" ; dcterms:description "Catalog of more than 50 sleep datasets (polysomnography, actigraphy and questionnaire data from children and adults, plus a few animal studies), each with documentation, file listings, a variable data dictionary and a data access request link. Files can be downloaded only after an access request is approved." ; schema1:url . kgr:nsrr.docs a schema1:DocumentationProduct ; rdfs:label "About the NSRR" ; dcterms:description "About page describing the NSRR mission, datasets, data harmonization, analysis tools and the collaboration with NHLBI BioData Catalyst." ; schema1:url . kgr:nsrr.edf-editor-translator a schema1:GraphicalInterface ; rdfs:label "NSRR EDF Editor and Translator" ; dcterms:description "Source code for the NSRR EDF Editor and Translator, a tool for working with European Data Format (EDF) sleep signal files and their annotations." ; schema1:url . kgr:nsrr.edf-viewer a schema1:GraphicalInterface ; rdfs:label "NSRR EDF Viewer" ; dcterms:description "MATLAB viewer for EDF polysomnography signal files and their NSRR annotations." ; schema1:url . kgr:nsrr.gem a schema1:ProgrammingInterface ; rdfs:label "NSRR Ruby Gem" ; dcterms:description "NSRR Ruby gem and command-line tool for downloading NSRR files with a user token, integrating data dictionaries, and building custom Ruby applications." ; schema1:url . kgr:nsrr.harmonization a schema1:DocumentationProduct ; rdfs:label "NSRR Data Harmonization" ; dcterms:description "Documentation and scripts for NSRR harmonized variables, covering non-sleep phenotypes, polysomnography and polygraphy, actigraphy and sleep questionnaires, with JSON definitions of harmonized variables and coded domains." ; schema1:url . kgr:nsrr.luna a schema1:ProgrammingInterface ; rdfs:label "Luna" ; dcterms:description "Luna, an open-source C/C++ library and command-line tool for analyzing large numbers of sleep studies, on which the NSRR signal processing pipeline is based." ; schema1:url . kgr:nsrr.portal a schema1:GraphicalInterface ; rdfs:label "NSRR Portal" ; dcterms:description "NSRR web portal for browsing datasets, searching variables, reading documentation and forum posts, and requesting and downloading sleep study data." ; schema1:url . kgr:nsrr.r-package a schema1:ProgrammingInterface ; rdfs:label "nsrr R Package" ; dcterms:description "R package, contributed by John Muschelli and Ciprian Crainiceanu, for listing and downloading NSRR files directly from R." ; schema1:url . kgr:nsrr.tools a schema1:DocumentationProduct ; rdfs:label "NSRR Tools" ; dcterms:description "NSRR tools page listing analysis software, the NSRR gem, Spout data dictionary tooling and other utilities for working with NSRR data." ; schema1:url . kgr:nuget.website a schema1:GraphicalInterface ; rdfs:label "NuGet Gallery website" ; dcterms:description "Web interface and public registry for browsing and retrieving .NET packages" ; schema1:url . kgr:oae.owl a schema1:OntologyProduct ; rdfs:label "oae.owl" ; dcterms:description "Ontology of Adverse Events in OWL format" ; schema1:url . kgr:oarcs.kg-bioportal a schema1:GraphProduct ; rdfs:label "OARCS KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Ontology of Arthropod Circulatory Systems (OARCS), produced by KG-Bioportal from the BioPortal submission. The archive contains OARCS_nodes.tsv and OARCS_edges.tsv." ; schema1:url . kgr:oarcs.owl a schema1:OntologyProduct ; rdfs:label "oarcs.owl" ; dcterms:description "Ontology of Arthropod Circulatory Systems in OWL format" ; schema1:url . kgr:oard.api a schema1:ProgrammingInterface ; rdfs:label "OARD Web Application and API" ; dcterms:description "OARD public web application and RESTful web API for querying data-driven associations between rare diseases and their phenotypes and co-morbidities derived from de-identified electronic health records. The public service is deployed at https://rare.cohd.io/ on NCATS AWS infrastructure; the application and API source are maintained on GitHub." ; schema1:url . kgr:oba.obo a schema1:OntologyProduct ; rdfs:label "oba.obo" ; dcterms:description "Ontology of Biological Attributes in OBO format" ; schema1:url . kgr:oba.owl a schema1:OntologyProduct ; rdfs:label "oba.owl" ; dcterms:description "Ontology of Biological Attributes in OWL format" ; schema1:url . kgr:oba.subsets.oba-basic.obo a schema1:OntologyProduct ; rdfs:label "oba.subsets.oba-basic.obo" ; dcterms:description "Ontology of Biological Attributes in OBO format" ; schema1:url . kgr:obci.owl a schema1:OntologyProduct ; rdfs:label "OBCI, OWL format" ; dcterms:description "Ontology for Biomarkers of Clinical Interest, OWL format. Defines biomarker classes and their clinical role classifications (e.g. diagnostic, prognostic, predictive, monitoring, pharmacodynamic/response, safety, susceptibility/risk biomarkers)." ; schema1:url . kgr:obcs.kg-bioportal a schema1:GraphProduct ; rdfs:label "OBCS KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Ontology of Biological and Clinical Statistics (OBCS), produced by KG-Bioportal from the BioPortal submission. The archive contains OBCS_nodes.tsv and OBCS_edges.tsv." ; schema1:url . kgr:obcs.owl a schema1:OntologyProduct ; rdfs:label "obcs.owl" ; dcterms:description "Ontology of Biological and Clinical Statistics in OWL format" ; schema1:url . kgr:obi.kg-bioportal a schema1:GraphProduct ; rdfs:label "OBI KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Ontology for Biomedical Investigations (OBI), produced by KG-Bioportal from the BioPortal submission. The archive contains OBI_nodes.tsv and OBI_edges.tsv." ; schema1:url . kgr:obi.obi-base.owl a schema1:OntologyProduct ; rdfs:label "OBI Base module" ; dcterms:description "Base module for OBI" ; schema1:url . kgr:obi.obi_core.owl a schema1:OntologyProduct ; rdfs:label "OBI Core" ; dcterms:description "A collection of important high-level terms and their relations from OBI and other ontologies" ; schema1:url . kgr:obi.obo a schema1:OntologyProduct ; rdfs:label "OBI in OBO" ; dcterms:description "The OBO-format version of OBI" ; schema1:url . kgr:obi.owl a schema1:OntologyProduct ; rdfs:label "OBI" ; dcterms:description "The full version of OBI in OWL format" ; schema1:url . kgr:obib.kg-bioportal a schema1:GraphProduct ; rdfs:label "OBIB KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Ontology for Biobanking (OBIB), produced by KG-Bioportal from the BioPortal submission. The archive contains OBIB_nodes.tsv and OBIB_edges.tsv." ; schema1:url . kgr:obib.owl a schema1:OntologyProduct ; rdfs:label "obib.owl" ; dcterms:description "Ontology for Biobanking in OWL format" ; schema1:url . kgr:obis.api a schema1:ProgrammingInterface ; rdfs:label "OBIS API" ; dcterms:description "RESTful API providing programmatic access to marine biodiversity records, species information, and occurrence data with filtering by taxonomy, location, depth, and time" ; schema1:url . kgr:obis.dca a schema1:Product ; rdfs:label "OBIS Darwin Core Archive Downloads" ; dcterms:description "Complete biodiversity record exports in Darwin Core Archive format containing occurrence data with standardized metadata and EML documentation" ; schema1:url . kgr:obis.geoparquet a schema1:Product ; rdfs:label "OBIS GeoParquet on AWS" ; dcterms:description "Cloud-native GeoParquet format biodiversity records available on AWS S3 for efficient large-scale spatial analysis without local downloads" ; schema1:url . kgr:obis.manual a schema1:DocumentationProduct ; rdfs:label "OBIS Manual" ; dcterms:description "Comprehensive OBIS manual covering data standards, quality control procedures, Darwin Core implementation, publication guidelines, and API usage documentation" ; schema1:url . kgr:obis.mapper a schema1:GraphicalInterface ; rdfs:label "OBIS Web Mapper" ; dcterms:description "Interactive web mapper for searching, filtering, and visualizing marine species distributions across geographic areas, depth ranges, and time periods with multi-parameter search capabilities" ; schema1:url . kgr:obis.robis a schema1:ProgrammingInterface ; rdfs:label "robis R Package" ; dcterms:description "R package robis for programmatic data access and querying of OBIS data from R environment" ; schema1:url . kgr:obis.seamap a schema1:Product ; rdfs:label "OBIS-SEAMAP Marine Megavertebrates Database" ; dcterms:description "OBIS-SEAMAP specialized database for marine megavertebrates containing distribution, abundance, and telemetry data for marine mammals, seabirds, and sea turtles" ; schema1:url . kgr:oboe.characteristics a schema1:OntologyProduct ; rdfs:label "OBOE Characteristics OWL" ; dcterms:description "OBOE characteristics extension in OWL, defining measurable properties (Characteristics) used in observations." ; schema1:url . kgr:oboe.core a schema1:OntologyProduct ; rdfs:label "OBOE Core OWL" ; dcterms:description "OBOE core module in OWL, defining Observation, Measurement, Entity, Characteristic, Standard, Protocol, and their relationships." ; schema1:url . kgr:oboe.kg-bioportal a schema1:GraphProduct ; rdfs:label "OBOE KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of The Extensible Observation Ontology (OBOE), produced by KG-Bioportal from the BioPortal submission. The archive contains OBOE_nodes.tsv and OBOE_edges.tsv." ; schema1:url . kgr:oboe.owl a schema1:OntologyProduct ; rdfs:label "OBOE OWL (full)" ; dcterms:description "Full OBOE 1.2 ontology in OWL (RDF/XML). This top-level file imports the core, characteristics, and standards modules." ; schema1:url . kgr:oboe.repository a schema1:Product ; rdfs:label "OBOE GitHub repository" ; dcterms:description "GitHub repository for OBOE, containing the OWL source files, design documentation, and branches for released versions 1.0 through 1.2." ; schema1:url . kgr:oboe.standards a schema1:OntologyProduct ; rdfs:label "OBOE Standards OWL" ; dcterms:description "OBOE standards extension in OWL, defining units of measurement and unit conversions used to interpret measured values." ; schema1:url . kgr:obofoundry.portal a schema1:GraphicalInterface ; rdfs:label "OBO Foundry Website" ; dcterms:description "OBO Foundry website with a browsable table of registered ontologies, a detail page per ontology, and documentation of the OBO principles and review process." ; schema1:url . kgr:obofoundry.principles a schema1:DocumentationProduct ; rdfs:label "OBO Foundry Principles" ; dcterms:description "Summary of the OBO Foundry principles that member ontologies are expected to follow, such as openness, common format, URI/identifier space, versioning and documentation." ; schema1:url . kgr:obofoundry.registry.jsonld a schema1:Product ; rdfs:label "OBO Foundry Registry Metadata (JSON-LD)" ; dcterms:description "OBO registry ontology metadata serialized as JSON-LD." ; schema1:url . kgr:obofoundry.registry.ttl a schema1:Product ; rdfs:label "OBO Foundry Registry Metadata (Turtle)" ; dcterms:description "OBO registry ontology metadata serialized as RDF Turtle." ; schema1:url . kgr:obofoundry.registry.yaml a schema1:Product ; rdfs:label "OBO Foundry Registry Metadata (YAML)" ; dcterms:description "Machine-readable metadata for every ontology in the OBO registry (ids, titles, descriptions, PURLs, products, licenses, contacts, dependencies and activity status), in YAML." ; schema1:url . kgr:obofoundry.repository a schema1:Product ; rdfs:label "OBO Foundry GitHub Repository" ; dcterms:description "GitHub repository holding the OBO registry metadata (one Markdown file with YAML front matter per ontology), the Jekyll website, and the Python tooling that builds the registry exports and runs the OBO Dashboard checks. Data are CC0 1.0 and code is BSD 3-Clause." ; schema1:url . kgr:occo.kg-bioportal a schema1:GraphProduct ; rdfs:label "OCCO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Occupation Ontology (OCCO), produced by KG-Bioportal from the BioPortal submission. The archive contains OCCO_nodes.tsv and OCCO_edges.tsv." ; schema1:url . kgr:occo.owl a schema1:OntologyProduct ; rdfs:label "occo.owl" ; dcterms:description "Occupation Ontology in OWL format" ; schema1:url . kgr:offsides.data a schema1:Product ; rdfs:label "OFFSIDES Data Export" ; dcterms:description "Gzipped OFFSIDES table of drug side effects mined from FAERS that are not listed on official FDA labels." ; schema1:url . kgr:offsides.docs a schema1:DocumentationProduct ; rdfs:label "OffSIDES Project Page" ; dcterms:description "Tatonetti Lab project page describing OffSIDES and related nSIDES resources." ; schema1:url . kgr:ogg.owl a schema1:OntologyProduct ; rdfs:label "ogg.owl" ; dcterms:description "The Ontology of Genes and Genomes in OWL format" ; schema1:url . kgr:ogi.kg-bioportal a schema1:GraphProduct ; rdfs:label "OGI KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Ontology for Genetic Interval (OGI), produced by KG-Bioportal from the BioPortal submission. The archive contains OGI_nodes.tsv and OGI_edges.tsv." ; schema1:url . kgr:ogi.owl a schema1:OntologyProduct ; rdfs:label "ogi.owl" ; dcterms:description "Ontology for genetic interval in OWL format" ; schema1:url . kgr:ogms.kg-bioportal a schema1:GraphProduct ; rdfs:label "OGMS KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Ontology for General Medical Science (OGMS), produced by KG-Bioportal from the BioPortal submission. The archive contains OGMS_nodes.tsv and OGMS_edges.tsv." ; schema1:url . kgr:ogms.owl a schema1:OntologyProduct ; rdfs:label "ogms.owl" ; dcterms:description "Ontology for General Medical Science in OWL format" ; schema1:url . kgr:ogsf.kg-bioportal a schema1:GraphProduct ; rdfs:label "OGSF KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Ontology for Genetic Susceptibility Factor (OGSF), produced by KG-Bioportal from the BioPortal submission. The archive contains OGSF_nodes.tsv and OGSF_edges.tsv." ; schema1:url . kgr:ogsf.owl a schema1:OntologyProduct ; rdfs:label "ogsf.owl" ; dcterms:description "Ontology of Genetic Susceptibility Factor in OWL format" ; schema1:url . kgr:ohd-carolina.metadata a schema1:Product ; rdfs:label "OHD@Carolina Meta Knowledge Graph" ; dcterms:description "Meta knowledge graph JSON listing the node categories, predicates and edge attributes in the OHD@Carolina Automat graph." ; schema1:url . kgr:ohd-carolina.neo4j a schema1:GraphProduct ; rdfs:label "OHD@Carolina Automat Neo4j Dump" ; dcterms:description "Neo4j database dump of the OHD@Carolina Automat graph (build f627ebbefd242454, about 1.7 GB)." ; schema1:url . kgr:ohd.kg-bioportal a schema1:GraphProduct ; rdfs:label "OHD KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of The Oral Health and Disease Ontology (OHD), produced by KG-Bioportal from the BioPortal submission. The archive contains OHD_nodes.tsv and OHD_edges.tsv." ; schema1:url . kgr:ohd.owl a schema1:OntologyProduct ; rdfs:label "Oral Health and Disease Ontology" ; dcterms:description "Oral Health and Disease Ontology" ; schema1:url . kgr:ohdsi a schema1:Aggregator, "Organization" ; rdfs:label "OHDSI" ; dcterms:created "2026-04-10T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Observational Health Data Sciences and Informatics (OHDSI) is an open, international collaborative that develops and maintains the OMOP Common Data Model, standardized clinical vocabularies, and open-source analytics tooling for observational health research. In KG-Registry, this entry represents the parent OHDSI ecosystem that publishes OMOP specifications and distributes standardized vocabulary access through Athena." ; dcterms:identifier "ohdsi" ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:about ; schema1:hasPart kgr:ohd-carolina.graph, kgr:ohd-carolina.source-edges, kgr:ohdsi.achilles, kgr:ohdsi.ares, kgr:ohdsi.athena, kgr:ohdsi.athena_vocabularies, kgr:ohdsi.atlas, kgr:ohdsi.cdm_r_package, kgr:ohdsi.cohort_diagnostics, kgr:ohdsi.data_quality_dashboard, kgr:ohdsi.feature_extraction, kgr:ohdsi.hades, kgr:ohdsi.omop_cdm, kgr:ohdsi.portal, kgr:ohdsi.rabbit_in_a_hat ; schema1:name "OHDSI" ; skos:altLabel "Observational Health Data Sciences and Informatics" ; skos:inScheme "biomedical", "clinical", "electronic health records", "information technology" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:ohdsi . kgr:ohdsi.achilles a schema1:ProcessProduct ; rdfs:label "Achilles" ; dcterms:description "Package for broad database characterization against an OMOP CDM instance" ; schema1:url . kgr:ohdsi.ares a schema1:ProcessProduct ; rdfs:label "ARES" ; dcterms:description "Application for displaying results from Achilles and Data Quality Dashboard to support data quality and characterization research" ; schema1:url . kgr:ohdsi.atlas a schema1:ProcessProduct ; rdfs:label "ATLAS" ; dcterms:description "Open-source software for conducting scientific analyses on standardized observational data" ; schema1:url . kgr:ohdsi.cdm_r_package a schema1:ProcessProduct ; rdfs:label "CDM R Package" ; dcterms:description "R package used to dynamically generate OMOP CDM documentation and DDL scripts for supported SQL dialects" ; schema1:url . kgr:ohdsi.cohort_diagnostics a schema1:ProcessProduct ; rdfs:label "Cohort Diagnostics" ; dcterms:description "Package for evaluating and diagnosing cohort phenotype definitions built on OMOP CDM data" ; schema1:url . kgr:ohdsi.data_quality_dashboard a schema1:ProcessProduct ; rdfs:label "Data Quality Dashboard" ; dcterms:description "Tool that runs more than 3,500 data quality checks against an OMOP CDM instance" ; schema1:url . kgr:ohdsi.feature_extraction a schema1:ProcessProduct ; rdfs:label "Feature Extraction" ; dcterms:description "Package for generating cohort covariates and other features from OMOP CDM data" ; schema1:url . kgr:ohdsi.hades a schema1:ProcessProduct ; rdfs:label "HADES" ; dcterms:description "OHDSI methods suite for standardized analytics on OMOP CDM data, including characterization, population-level effect estimation, and patient-level prediction" ; schema1:url . kgr:ohdsi.portal a schema1:GraphicalInterface ; rdfs:label "OHDSI Web Portal" ; dcterms:description "Main OHDSI web portal for community, documentation, working groups, and software resources" ; schema1:url . kgr:ohdsi.rabbit_in_a_hat a schema1:ProcessProduct ; rdfs:label "Rabbit-In-A-Hat" ; dcterms:description "Interactive ETL design application for mapping source data into the OMOP Common Data Model using WhiteRabbit scan results" ; schema1:url . kgr:ohmi.kg-bioportal a schema1:GraphProduct ; rdfs:label "OHMI KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Ontology of Host-Microbe Interactions (OHMI), produced by KG-Bioportal from the BioPortal submission. The archive contains OHMI_nodes.tsv and OHMI_edges.tsv." ; schema1:url . kgr:ohmi.owl a schema1:OntologyProduct ; rdfs:label "ohmi.owl" ; dcterms:description "Ontology of Host-Microbiome Interactions in OWL format" ; schema1:url . kgr:ohpi.kg-bioportal a schema1:GraphProduct ; rdfs:label "OHPI KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Ontology of Host-Pathogen Interactions (OHPI), produced by KG-Bioportal from the BioPortal submission. The archive contains OHPI_nodes.tsv and OHPI_edges.tsv." ; schema1:url . kgr:ohpi.owl a schema1:OntologyProduct ; rdfs:label "ohpi.owl" ; dcterms:description "Ontology of Host Pathogen Interactions in OWL format" ; schema1:url . kgr:oio.obo a schema1:OntologyProduct ; rdfs:label "OIO OBO" ; dcterms:description "OBO Interoperability Ontology in OBO format" ; schema1:url . kgr:oio.owl a schema1:OntologyProduct ; rdfs:label "OIO OWL" ; dcterms:description "OBO Interoperability Ontology in OWL format" ; schema1:url . kgr:okn-void.sparql a schema1:ProgrammingInterface ; rdfs:label "OKN VoID graph descriptions SPARQL" ; dcterms:description "SPARQL endpoint for OKN VoID graph descriptions" ; schema1:url . kgr:okn-void.tpf a schema1:ProgrammingInterface ; rdfs:label "OKN VoID graph descriptions TPF" ; dcterms:description "Triple Pattern Fragments endpoint for OKN VoID graph descriptions" ; schema1:url . kgr:olatdv.kg-bioportal a schema1:GraphProduct ; rdfs:label "OLATDV KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Medaka Developmental Stages (OLATDV), produced by KG-Bioportal from the BioPortal submission. The archive contains OLATDV_nodes.tsv and OLATDV_edges.tsv." ; schema1:url . kgr:olatdv.obo a schema1:OntologyProduct ; rdfs:label "olatdv.obo" ; dcterms:description "Medaka Developmental Stages in OBO format" ; schema1:url . kgr:olatdv.owl a schema1:OntologyProduct ; rdfs:label "olatdv.owl" ; dcterms:description "Medaka Developmental Stages in OWL format" ; schema1:url . kgr:ols.api a schema1:ProgrammingInterface ; rdfs:label "OLS REST API" ; dcterms:description "RESTful API for programmatic access to ontology data including terms, properties, and relationships" ; schema1:url . kgr:ols.embeddings a schema1:Product ; rdfs:label "OLS Term Embeddings" ; dcterms:description "Precomputed ontology term embeddings (full, PCA and UMAP projections) from multiple language models, used for semantic search in OLS." ; schema1:url . kgr:ols.mappings a schema1:MappingProduct ; rdfs:label "OLS SSSOM Mappings" ; dcterms:description "Ontology mappings extracted from all ontologies in SSSOM TSV format" ; schema1:url . kgr:ols.mcp a schema1:ProgrammingInterface ; rdfs:label "OLS MCP Server" ; dcterms:description "Model Context Protocol (MCP) server for querying OLS from AI assistants over Streamable HTTP." ; schema1:url . kgr:ols.portal a schema1:GraphicalInterface ; rdfs:label "OLS Web Portal" ; dcterms:description "Web interface for browsing and searching biomedical ontologies with exact match and obsolete term filtering" ; schema1:url . kgr:oma.api.rest a schema1:ProgrammingInterface ; rdfs:label "OMA REST API" ; dcterms:description "RESTful API for accessing OMA data" ; schema1:url . kgr:oma.api.sparql a schema1:ProgrammingInterface ; rdfs:label "OMA SPARQL" ; dcterms:description "SPARQL endpoint for accessing OMA data" ; schema1:url . kgr:oma.group-descriptions.txt a schema1:Product ; rdfs:label "OMA Group Descriptions" ; dcterms:description "Text descriptions for OMA groups" ; schema1:url . kgr:oma.groups.txt a schema1:Product ; rdfs:label "OMA Groups (Text)" ; dcterms:description "OMA orthology groups in plain text format" ; schema1:url . kgr:oma.hdf5 a schema1:Product ; rdfs:label "OMA Browser Database (HDF5)" ; dcterms:description "OMA Browser database in HDF5 format. The single monolithic OmaServer.h5 has been replaced by taxonomic-range HDF5 files (e.g. Primates.h5, Metazoa.h5, Viridiplantae.h5); see the current download page." ; schema1:url . kgr:oma.hogs.orthoxml a schema1:Product ; rdfs:label "OMA HOGs (OrthoXML)" ; dcterms:description "Hierarchical Orthologous Groups (HOGs) in OrthoXML format" ; schema1:url . kgr:oma.protein-annotations.txt a schema1:Product ; rdfs:label "OMA Protein Annotations" ; dcterms:description "Protein annotations in text format" ; schema1:url . kgr:oma.proteins.fasta a schema1:Product ; rdfs:label "OMA Protein Sequences" ; dcterms:description "Protein sequences from all genomes in FASTA format" ; schema1:url . kgr:oma.rdf a schema1:Product ; rdfs:label "OMA RDF Data" ; dcterms:description "OMA data in RDF format (Turtle syntax)" ; schema1:url . kgr:oma.site a schema1:GraphicalInterface ; rdfs:label "OMA Browser" ; dcterms:description "Web interface for exploring OMA data" ; schema1:url . kgr:oma.species.txt a schema1:Product ; rdfs:label "OMA Species Metadata" ; dcterms:description "Species metadata including taxonomy identifiers and genome source information" ; schema1:url . kgr:omia.browser a schema1:GraphicalInterface ; rdfs:label "OMIA web interface" ; dcterms:description "The OMIA web interface, providing browsing and search of phenes, species, genes, and likely causal variants." ; schema1:url . kgr:omia.sql-dump a schema1:Product ; rdfs:label "OMIA SQL database dump" ; dcterms:description "A full dump of the OMIA database as MySQL SQL statements. The OMIA team asks to be contacted to discuss co-authorship arrangements for publications relying on this dump or on extended data." ; schema1:url . kgr:omia.vcf-exports a schema1:Product ; rdfs:label "OMIA variant VCF exports" ; dcterms:description "VCF exports of OMIA likely causal variants, given in the coordinates of the relevant species reference assemblies." ; schema1:url . kgr:omia.xml-dump a schema1:Product ; rdfs:label "OMIA XML database dump" ; dcterms:description "A full dump of the OMIA database in XML format." ; schema1:url . kgr:omiabis.owl a schema1:OntologyProduct ; rdfs:label "omiabis.owl" ; dcterms:description "Ontologized MIABIS in OWL format" ; schema1:url . kgr:omim.api a schema1:ProgrammingInterface ; rdfs:label "OMIM API" ; dcterms:description "REST-based API for programmatic access to OMIM data (registration and API key required)" ; schema1:url . kgr:omim.web a schema1:GraphicalInterface ; rdfs:label "OMIM Website" ; dcterms:description "Web interface for browsing and searching OMIM entries" ; schema1:url . kgr:omit.kg-bioportal a schema1:GraphProduct ; rdfs:label "OMIT KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Ontology for MicroRNA Target (OMIT), produced by KG-Bioportal from the BioPortal submission. The archive contains OMIT_nodes.tsv and OMIT_edges.tsv." ; schema1:url . kgr:omit.owl a schema1:OntologyProduct ; rdfs:label "omit.owl" ; dcterms:description "Ontology for MIRNA Target in OWL format" ; schema1:url . kgr:omnipath.cytoscape_plugin a schema1:ProcessProduct ; rdfs:label "OmniPath Cytoscape Plugin" ; dcterms:description "Cytoscape plugin for importing and visualizing OmniPath network data within the Cytoscape network analysis platform" ; schema1:url . kgr:omnipath.explorer a schema1:GraphicalInterface ; rdfs:label "OmniPath Explorer" ; dcterms:description "Interactive database explorer for browsing OmniPath data integrated from 160+ resources" ; schema1:url . kgr:omnipath.pypath a schema1:ProcessProduct ; rdfs:label "PyPath Database Builder" ; dcterms:description "Python package (pypath) for building custom OmniPath databases and accessing the OmniPath infrastructure" ; schema1:url . kgr:omnipath.python_client a schema1:ProgrammingInterface ; rdfs:label "OmniPath Python Client" ; dcterms:description "Python client library providing programmatic access to OmniPath databases for Python-based analysis workflows" ; schema1:url . kgr:omnipath.r_package a schema1:ProgrammingInterface ; rdfs:label "OmnipathR Package" ; dcterms:description "R/Bioconductor package (OmnipathR) for accessing and analyzing OmniPath data within the R statistical computing environment" ; schema1:url . kgr:omnipath.webservice a schema1:ProgrammingInterface ; rdfs:label "OmniPath Web Service" ; dcterms:description "Web service API providing programmatic access to OmniPath molecular interaction networks, annotations, and intercellular communication data" ; schema1:url . kgr:omo.kg-bioportal a schema1:GraphProduct ; rdfs:label "OMO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of OBO Metadata Ontology (OMO), produced by KG-Bioportal from the BioPortal submission. The archive contains OMO_nodes.tsv and OMO_edges.tsv." ; schema1:url . kgr:omo.owl a schema1:OntologyProduct ; rdfs:label "omo.owl" ; dcterms:description "OBO Metadata Ontology in OWL format" ; schema1:url . kgr:omp.kg-bioportal a schema1:GraphProduct ; rdfs:label "OMP KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Ontology of Microbial Phenotypes (OMP), produced by KG-Bioportal from the BioPortal submission. The archive contains OMP_nodes.tsv and OMP_edges.tsv." ; schema1:url . kgr:omp.obo a schema1:OntologyProduct ; rdfs:label "omp.obo" ; dcterms:description "Ontology of Microbial Phenotypes in OBO format" ; schema1:url . kgr:omp.owl a schema1:OntologyProduct ; rdfs:label "omp.owl" ; dcterms:description "Ontology of Microbial Phenotypes in OWL format" ; schema1:url . kgr:omrse.kg-bioportal a schema1:GraphProduct ; rdfs:label "OMRSE KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Ontology for Modeling and Representation of Social Entities (OMRSE), produced by KG-Bioportal from the BioPortal submission. The archive contains OMRSE_nodes.tsv and OMRSE_edges.tsv." ; schema1:url . kgr:omrse.owl a schema1:OntologyProduct ; rdfs:label "omrse.owl" ; dcterms:description "Ontology for Modeling and Representation of Social Entities in OWL format" ; schema1:url . kgr:onco.all_ndjson a schema1:GraphProduct ; rdfs:label "OnCo full corpus (NDJSON)" ; dcterms:description "Every OnCo record as newline-delimited JSON, one record per line." ; schema1:url . kgr:onco.api a schema1:ProgrammingInterface ; rdfs:label "OnCo static API" ; dcterms:description "Static JSON API served with CORS. Provides per-kind JSON and CSV files, one JSON file per record with its neighbours, a search index, per-record Markdown context files, Atom feeds and an OpenAPI 3.1 description." ; schema1:url . kgr:onco.mcp a schema1:ProgrammingInterface ; rdfs:label "OnCo MCP server and CLI" ; dcterms:description "Model Context Protocol server (npm package onco-mcp) exposing search, entity lookup, listing by kind, question answering, context retrieval and comparison over the OnCo corpus to AI assistants. A command-line tool (npm package onco) offers the same operations from the shell." ; schema1:url . kgr:onco.ntriples a schema1:GraphProduct ; rdfs:label "OnCo RDF triples" ; dcterms:description "The OnCo corpus as RDF N-Triples. Records are typed with schema.org classes and linked through the onco.cc namespace." ; schema1:url . kgr:onco.schema a schema1:DataModelProduct ; rdfs:label "OnCo entity JSON Schema" ; dcterms:description "JSON Schema for OnCo entity records, covering every kind in the corpus and its relationship fields." ; schema1:url . kgr:onco.site a schema1:GraphicalInterface ; rdfs:label "OnCo website" ; dcterms:description "The OnCo website. One page per record with filterable tables, tooltips on technical terms, molecule and target renderings, a graph explorer, a body map, a timeline and question answering." ; schema1:url . kgr:oncokb.annotator a schema1:ProcessProduct ; rdfs:label "OncoKB Annotator" ; dcterms:description "Python-based annotation tool for annotating MAF files, copy number alterations, fusions, and structural variants with OncoKB therapeutic and biological annotations" ; schema1:url . kgr:oncokb.api a schema1:ProgrammingInterface ; rdfs:label "OncoKB Web API" ; dcterms:description "RESTful web API providing programmatic access to OncoKB data including gene annotations, variant classifications, therapeutic implications, and evidence levels" ; schema1:url . kgr:oncokb.demo a schema1:GraphicalInterface ; rdfs:label "OncoKB Demo" ; dcterms:description "Demo version of OncoKB containing full data for BRAF, TP53, and ROS1 genes for evaluation purposes before licensing" ; schema1:url . kgr:oncokb.web_interface a schema1:GraphicalInterface ; rdfs:label "OncoKB Web Interface" ; dcterms:description "Interactive web interface for exploring OncoKB precision oncology knowledge base, including gene and variant information, therapeutic implications, and evidence levels" ; schema1:url . kgr:one.kg-bioportal a schema1:GraphProduct ; rdfs:label "ONE KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Ontology for Nutritional Epidemiology (ONE), produced by KG-Bioportal from the BioPortal submission. The archive contains ONE_nodes.tsv and ONE_edges.tsv." ; schema1:url . kgr:one.owl a schema1:OntologyProduct ; rdfs:label "one.owl" ; dcterms:description "Ontology for Nutritional Epidemiology in OWL format" ; schema1:url . kgr:ons.kg-bioportal a schema1:GraphProduct ; rdfs:label "ONS KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Ontology for Nutritional Studies (ONS), produced by KG-Bioportal from the BioPortal submission. The archive contains ONS_nodes.tsv and ONS_edges.tsv." ; schema1:url . kgr:ons.owl a schema1:OntologyProduct ; rdfs:label "ONS latest release" ; dcterms:description "ONS latest release" ; schema1:url . kgr:ontoavida.kg-bioportal a schema1:GraphProduct ; rdfs:label "ONTOAVIDA KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of OntoAvida: ontology for Avida digital evolution platform (ONTOAVIDA), produced by KG-Bioportal from the BioPortal submission. The archive contains ONTOAVIDA_nodes.tsv and ONTOAVIDA_edges.tsv." ; schema1:url . kgr:ontoavida.obo a schema1:OntologyProduct ; rdfs:label "OBO" ; dcterms:description "Equivalent to ontoavida.owl, in obo format" ; schema1:url . kgr:ontoavida.owl a schema1:OntologyProduct ; rdfs:label "OWL" ; dcterms:description "The main ontology in OWL" ; schema1:url . kgr:ontology-kp.docs a schema1:DocumentationProduct ; rdfs:label "Ontology KP Documentation" ; dcterms:description "Translator wiki documentation for the SRI Ontology Service and Ontology KP usage." ; schema1:url . kgr:ontology-kp.ubergraph a schema1:ProcessProduct ; rdfs:label "Ontology KP UberGraph Source" ; dcterms:description "UberGraph source repository used to support ontology reasoning and integrated ontology queries." ; schema1:url . kgr:ontoneo.kg-bioportal a schema1:GraphProduct ; rdfs:label "ONTONEO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Obstetric and Neonatal Ontology (ONTONEO), produced by KG-Bioportal from the BioPortal submission. The archive contains ONTONEO_nodes.tsv and ONTONEO_edges.tsv." ; schema1:url . kgr:ontoneo.owl a schema1:OntologyProduct ; rdfs:label "ONTONEO" ; dcterms:description "The full version of ONTONEO in OWL format" ; schema1:url . kgr:ontotext a "Organization" ; rdfs:label "Ontotext Lab, Sirma Group" . kgr:oostt.kg-bioportal a schema1:GraphProduct ; rdfs:label "OOSTT KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Ontology of Organizational Structures of Trauma centers and Trauma systems (OOSTT), produced by KG-Bioportal from the BioPortal submission. The archive contains OOSTT_nodes.tsv and OOSTT_edges.tsv." ; schema1:url . kgr:oostt.owl a schema1:OntologyProduct ; rdfs:label "oostt.owl" ; dcterms:description "Ontology of Organizational Structures of Trauma centers and Trauma systems in OWL format" ; schema1:url . kgr:open-english-wordnet.api a schema1:ProgrammingInterface ; rdfs:label "Open English WordNet JSON API" ; dcterms:description "JSON API for programmatic lookup of lemmas, senses and synsets in Open English WordNet, documented at en-word.net." ; schema1:url . kgr:open-english-wordnet.homepage a schema1:GraphicalInterface ; rdfs:label "Open English WordNet Website" ; dcterms:description "Open English WordNet website, with a search and browsing interface for words, synsets and their relations, plus links to all releases." ; schema1:url . kgr:open-english-wordnet.repo a schema1:Product ; rdfs:label "Open English WordNet GitHub Repository" ; dcterms:description "GitHub repository holding the Open English WordNet source data (one YAML file per lexicographer file), build scripts, issue tracker and versioned releases." ; schema1:url . kgr:open-tggates.all-attributes a schema1:Product ; rdfs:label "Open TG-GATEs CEL File Attachments (All Attributes)" ; dcterms:description "Combined attribute table for all CEL files, with compound, dose, time point, sample and toxicological measurements for each array, as a single TSV file." ; schema1:url . kgr:open-tggates.archive a schema1:GraphicalInterface ; rdfs:label "Open TG-GATEs LSDB Archive Page" ; dcterms:description "NBDC LSDB Archive page for Open TG-GATEs, with the database description, license terms, update history and links to the downloadable files and TogoDB simple search tables." ; schema1:url . kgr:open-tggates.biochemistry a schema1:Product ; rdfs:label "Open TG-GATEs Biochemistry" ; dcterms:description "Blood biochemistry measurements for the rat in vivo studies, as a CSV file." ; schema1:url . kgr:open-tggates.cel-files a schema1:Product ; rdfs:label "Open TG-GATEs Gene Expression Data (CEL Files)" ; dcterms:description "Affymetrix GeneChip CEL files (Rat Genome 230 2.0 and Human Genome U133 Plus 2.0 arrays) from rat liver and kidney in vivo and rat and human hepatocytes in vitro, packaged as one zip archive per compound and study design (about 12 GB for the rat data alone)." ; schema1:url . kgr:open-tggates.compounds a schema1:Product ; rdfs:label "Open TG-GATEs Compound List" ; dcterms:description "List of the 170 Open TG-GATEs compounds with abbreviations, compound numbers and links to the CEL file archives for each study design, as a CSV file." ; schema1:url . kgr:open-tggates.download a schema1:Product ; rdfs:label "Open TG-GATEs Download Directory" ; dcterms:description "Download directory of the archived Open TG-GATEs release (2012), containing the README, zipped CSV/TSV attribute tables and per-compound zip archives of CEL files organized by species, in vivo or in vitro, organ and dosing regimen." ; schema1:url . kgr:open-tggates.hematology a schema1:Product ; rdfs:label "Open TG-GATEs Hematology" ; dcterms:description "Hematology measurements for the rat in vivo studies, as a CSV file." ; schema1:url . kgr:open-tggates.original-site a schema1:GraphicalInterface ; rdfs:label "Open TG-GATEs Original Web Site" ; dcterms:description "Original Open TG-GATEs web site of the Toxicogenomics Informatics Project, which offered search by compound name or pathological finding and CEL file download." ; schema1:url . kgr:open-tggates.pathology a schema1:Product ; rdfs:label "Open TG-GATEs Pathological Items" ; dcterms:description "Histopathological findings for liver and kidney samples from the rat in vivo studies, with finding type, topography and severity grade, as a CSV file." ; schema1:url . kgr:open-tggates.togodb a schema1:GraphicalInterface ; rdfs:label "Open TG-GATEs TogoDB Simple Search" ; dcterms:description "TogoDB table view of the Open TG-GATEs compound list, one of the simple search and download interfaces the NBDC provides for each archived Open TG-GATEs table." ; schema1:url . kgr:open-tree-of-life-collaboration a "Organization" ; rdfs:label "Open Tree of Life Collaboration" . kgr:open-tree-of-life.api a schema1:ProgrammingInterface ; rdfs:label "Open Tree of Life APIs" ; dcterms:description "RESTful APIs providing programmatic access to synthetic tree, taxonomy, and taxonomic name resolution services with support for MRCA queries and subtree extraction" ; schema1:url . kgr:open-tree-of-life.bulk-download a schema1:Product ; rdfs:label "Open Tree of Life Bulk Downloads" ; dcterms:description "Preprocessed source trees and taxonomy files available for bulk download in Newick, Nexus, and JSON formats" ; schema1:url . kgr:open-tree-of-life.documentation a schema1:DocumentationProduct ; rdfs:label "Open Tree of Life Developer Documentation" ; dcterms:description "API reference, developer guides, and integration documentation for accessing Open Tree of Life data programmatically" ; schema1:url . kgr:open-tree-of-life.phylesystem a schema1:Product ; rdfs:label "Phylesystem Data Repository" ; dcterms:description "Complete phylesystem repository containing 4,500+ curated phylogenetic studies in NexSON JSON format with full version control history" ; schema1:url . kgr:open-tree-of-life.tnrs a schema1:ProgrammingInterface ; rdfs:label "Taxonomic Name Resolution Service (TNRS)" ; dcterms:description "Taxonomic Name Resolution Service (TNRS) providing exact and fuzzy matching of taxonomic names to Open Tree Taxonomy with context-based disambiguation" ; schema1:url . kgr:open-tree-of-life.tree-browser a schema1:GraphicalInterface ; rdfs:label "Open Tree of Life Browser" ; dcterms:description "Interactive zoomable phylogenetic tree browser enabling exploration of taxonomic relationships and phylogenetic structure across 2.4 million tips" ; schema1:url . kgr:openalex.api a schema1:ProgrammingInterface ; rdfs:label "OpenAlex API" ; dcterms:description "The OpenAlex REST API provides open programmatic access to the full OpenAlex catalog of works, authors, sources, institutions, publishers, funders, and concepts/topics." ; schema1:url . kgr:openalex.snapshot a schema1:Product ; rdfs:label "OpenAlex Data Snapshot" ; dcterms:description "The OpenAlex data snapshot is a complete downloadable copy of the OpenAlex dataset, updated regularly and distributed as JSON Lines files via a public Amazon S3 bucket for bulk use." ; schema1:url . kgr:openbiodiv.ontology.guide a schema1:DocumentationProduct ; rdfs:label "OpenBioDiv-O Guide" ; dcterms:description "Guide to OpenBioDiv-O, the OpenBiodiv Ontology" ; schema1:url . kgr:opendataphilly.crime a schema1:Product ; rdfs:label "Philadelphia Crime Incidents" ; dcterms:description "Philadelphia crime incidents dataset, recording reported crimes with time, category, coordinate, and ZIP-code attributes." ; schema1:url . kgr:opendataphilly.site a schema1:GraphicalInterface ; rdfs:label "OpenDataPhilly Portal" ; dcterms:description "Open data portal cataloging public datasets, APIs, and applications for the Philadelphia region." ; schema1:url . kgr:openfda.portal a schema1:GraphicalInterface ; rdfs:label "openFDA Website" ; dcterms:description "openFDA website with API documentation, interactive query explorers and dataset overviews for each endpoint." ; schema1:url . kgr:openfema.api a schema1:ProgrammingInterface ; rdfs:label "OpenFEMA API" ; dcterms:description "Versioned RESTful API for querying OpenFEMA datasets programmatically, supporting OData-style filtering, selection, ordering, and paging with JSON, JSONA, and CSV output." ; schema1:url . kgr:openfema.datasets a schema1:Product ; rdfs:label "OpenFEMA Data Sets" ; dcterms:description "Catalog of OpenFEMA datasets covering federal disaster declarations, individual and public assistance, hazard mitigation, flood insurance, and related FEMA programs, available as downloadable CSV, JSON, and other file formats." ; schema1:url . kgr:openpredict.openapi a schema1:Product ; rdfs:label "OpenPredict OpenAPI Specification" ; dcterms:description "OpenAPI JSON specification describing OpenPredict TRAPI, prediction, similarity, model, and explanation endpoints" ; schema1:url . kgr:openpredict.ui a schema1:GraphicalInterface ; rdfs:label "OpenPredict Swagger UI" ; dcterms:description "Swagger UI documentation for interactively exploring OpenPredict API operations and examples" ; schema1:url . kgr:openstreetmap.portal a schema1:GraphicalInterface ; rdfs:label "OpenStreetMap web portal" ; dcterms:description "OpenStreetMap main web map and data portal providing access to the collaborative geospatial database of infrastructure features worldwide." ; schema1:url . kgr:opentargets.api.graphql a schema1:ProgrammingInterface ; rdfs:label "Open Targets Platform GraphQL API" ; dcterms:description "GraphQL API for accessing Open Targets Platform data programmatically." ; schema1:url . kgr:opentargets.api.rest a schema1:ProgrammingInterface ; rdfs:label "Open Targets Platform API Documentation" ; dcterms:description "API documentation for accessing Open Targets Platform data programmatically via the GraphQL API (the REST API has been retired)." ; schema1:url . kgr:opentargets.platform a schema1:GraphicalInterface ; rdfs:label "Open Targets Platform" ; dcterms:description "The Open Targets Platform integrates and visualizes public data on target-disease associations to assist in drug target identification and prioritization." ; schema1:url . kgr:opl.kg-bioportal a schema1:GraphProduct ; rdfs:label "OPL KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Ontology for Parasite LifeCycle (OPL), produced by KG-Bioportal from the BioPortal submission. The archive contains OPL_nodes.tsv and OPL_edges.tsv." ; schema1:url . kgr:opl.owl a schema1:OntologyProduct ; rdfs:label "opl.owl" ; dcterms:description "Ontology for Parasite LifeCycle in OWL format" ; schema1:url . kgr:opmi.kg-bioportal a schema1:GraphProduct ; rdfs:label "OPMI KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Ontology of Precision Medicine and Investigation (OPMI), produced by KG-Bioportal from the BioPortal submission. The archive contains OPMI_nodes.tsv and OPMI_edges.tsv." ; schema1:url . kgr:opmi.owl a schema1:OntologyProduct ; rdfs:label "opmi.owl" ; dcterms:description "Ontology of Precision Medicine and Investigation in OWL format" ; schema1:url . kgr:orcid.api a schema1:ProgrammingInterface ; rdfs:label "ORCID Public API" ; dcterms:description "Public API documentation and access information for ORCID record retrieval." ; schema1:url . kgr:orcid.docs a schema1:DocumentationProduct ; rdfs:label "ORCID Documentation" ; dcterms:description "ORCID documentation, support, and integration guidance for researcher records, API clients, and institutional workflows." ; schema1:url . kgr:orcid.portal a schema1:GraphicalInterface ; rdfs:label "ORCID Registry Portal" ; dcterms:description "Web interface for searching ORCID records and viewing researcher profiles." ; schema1:url . kgr:ordo.kg-bioportal a schema1:GraphProduct ; rdfs:label "ORDO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Orphanet Rare Disease Ontology (ORDO), produced by KG-Bioportal from the BioPortal submission. The archive contains ORDO_nodes.tsv and ORDO_edges.tsv." ; schema1:url . kgr:ordo.owl a schema1:DataModelProduct ; rdfs:label "ORDO OWL" ; dcterms:description "ORDO in OWL format in English (v4.8)" ; schema1:url . kgr:ordo.sparql a schema1:ProgrammingInterface ; rdfs:label "ORDO SPARQL Endpoint" ; dcterms:description "SPARQL endpoint for querying the ORDO ontology" ; schema1:url . kgr:oreganno.ucsc a schema1:Product ; rdfs:label "ORegAnno UCSC Track Download" ; dcterms:description "ORegAnno 3.0 regulatory annotation as a UCSC Genome Browser track and bulk download (human, hg38)." ; schema1:url . kgr:oregano.docs a schema1:DocumentationProduct ; rdfs:label "OREGANO Project Documentation" ; dcterms:description "Project repository and README describing OREGANO's scope, statistics, integration workflow, and application context." ; schema1:url . kgr:oregano.sparql a schema1:GraphProduct ; rdfs:label "OREGANO Knowledge Graph Data Download (Zenodo)" ; dcterms:description "OREGANO knowledge graph data download on Zenodo (record 10103842, v3). Provides the integrated graph as TSV triples (OREGANO_V2.1.tsv) plus per-entity TSV files and a Turtle (.ttl) metadata file with entity names and cross-references. This download replaces the former public SPARQL endpoint, which is no longer available." ; schema1:url . kgr:organoiddb.portal a schema1:GraphicalInterface ; rdfs:label "OrganoidDB web portal" ; dcterms:description "Web interface for searching gene expression across organoid types, culture sources and protocols, sample types and developmental stages, with correlation analysis and dataset pages showing culture details, differentially expressed genes, enriched pathways and single-cell clusters." ; schema1:url . kgr:orkg.api a schema1:ProgrammingInterface ; rdfs:label "ORKG REST API" ; dcterms:description "Public REST API for programmatic access to ORKG resources, comparisons, papers, and other structured scholarly content." ; schema1:url . kgr:orkg.api-docs a schema1:DocumentationProduct ; rdfs:label "ORKG API Documentation" ; dcterms:description "Static reference documentation for the ORKG REST API published via GitLab Pages." ; schema1:url . kgr:orkg.docs a schema1:DocumentationProduct ; rdfs:label "ORKG Documentation" ; dcterms:description "Official ORKG documentation covering tutorials, reference material, and REST API model documentation." ; schema1:url . kgr:orkg.portal a schema1:GraphicalInterface ; rdfs:label "ORKG Web Portal" ; dcterms:description "Web portal for browsing papers, creating structured research descriptions, and comparing research contributions in ORKG." ; schema1:url . kgr:orkg.python a schema1:ProcessProduct ; rdfs:label "ORKG Python Package" ; dcterms:description "Python package wrapping the ORKG API for programmatic access from Python workflows." ; schema1:url . kgr:orkg.sparql a schema1:GraphicalInterface ; rdfs:label "ORKG Visual SPARQL Editor" ; dcterms:description "Visual SPARQL editor for exploring ORKG data with query examples." ; schema1:url . kgr:orkg.triplestore a schema1:GraphicalInterface ; rdfs:label "ORKG Virtuoso Query Editor" ; dcterms:description "Virtuoso-based SPARQL query editor for querying ORKG RDF data." ; schema1:url . kgr:ornaseq.kg-bioportal a schema1:GraphProduct ; rdfs:label "ORNASEQ KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Ontology of RNA Sequencing (ORNASEQ), produced by KG-Bioportal from the BioPortal submission. The archive contains ORNASEQ_nodes.tsv and ORNASEQ_edges.tsv." ; schema1:url . kgr:ornaseq.owl a schema1:OntologyProduct ; rdfs:label "ornaseq.owl" ; dcterms:description "Ontology of RNA Sequencing in OWL format" ; schema1:url . kgr:orphanet.biobanks a schema1:Product ; rdfs:label "Biobanks Dataset" ; dcterms:description "XML dataset containing information on biobanks dedicated to rare diseases." ; schema1:url . kgr:orphanet.biobanksnetworks a schema1:Product ; rdfs:label "Biobanks Networks Dataset" ; dcterms:description "XML dataset containing information on biobank networks for rare diseases." ; schema1:url . kgr:orphanet.clinicaltrials a schema1:Product ; rdfs:label "National Clinical Trials Dataset" ; dcterms:description "XML dataset containing information on national clinical trials for rare diseases." ; schema1:url . kgr:orphanet.clinicaltrialsnetworks a schema1:Product ; rdfs:label "Multinational Clinical Trials Networks Dataset" ; dcterms:description "XML dataset containing information on multinational clinical trial networks for rare diseases." ; schema1:url . kgr:orphanet.diagnostictests a schema1:Product ; rdfs:label "Diagnostic Tests and Laboratories Dataset" ; dcterms:description "XML dataset containing information on diagnostic tests and clinical laboratories for rare diseases." ; schema1:url . kgr:orphanet.expertcenters a schema1:Product ; rdfs:label "Expert Centers Dataset" ; dcterms:description "XML dataset containing information on expert centers dedicated to the medical management and/or genetic counselling for rare diseases." ; schema1:url . kgr:orphanet.expertcentersnetworks a schema1:Product ; rdfs:label "Expert Centers Networks Dataset" ; dcterms:description "XML dataset containing information on expert center networks for rare diseases." ; schema1:url . kgr:orphanet.nomenclature a schema1:DataModelProduct ; rdfs:label "Orphanet Nomenclature Pack" ; dcterms:description "The Orphanet nomenclature pack provides ORPHAcodes (unique identifiers) for rare diseases, along with mappings to other terminologies, and is released annually in July." ; schema1:url . kgr:orphanet.orphacode_api a schema1:ProgrammingInterface ; rdfs:label "ORPHAcodes API" ; dcterms:description "API for accessing the Orphanet nomenclature pack data, allowing flexible implementation into various healthcare information systems." ; schema1:url . kgr:orphanet.orphadata_science a schema1:GraphicalInterface ; rdfs:label "Orphadata Science Portal" ; dcterms:description "Orphadata Science portal for Orphanet scientific knowledge files, ORDO, HOOM, and Orphapackets downloads" ; schema1:url . kgr:orphanet.orphadataapi a schema1:ProgrammingInterface ; rdfs:label "Orphadata API" ; dcterms:description "Contact point for API-mediated or request-mediated access to Orphanet scientific knowledge, ORPHAcodes, and expert resources data." ; schema1:url . kgr:orphanet.orphandrugs a schema1:Product ; rdfs:label "Orphan Drugs Dataset" ; dcterms:description "XML dataset containing information on orphan drugs for rare diseases, including substances with orphan designation and/or marketing authorization." ; schema1:url . kgr:orphanet.patientorganizations a schema1:Product ; rdfs:label "Patient Organizations Dataset" ; dcterms:description "XML dataset containing information on patient organizations dedicated to rare diseases." ; schema1:url . kgr:orphanet.patientorganizationsnetworks a schema1:Product ; rdfs:label "Patient Organizations Networks Dataset" ; dcterms:description "XML dataset containing information on patient organization networks for rare diseases." ; schema1:url . kgr:orphanet.patientregistries a schema1:Product ; rdfs:label "Patient Registries Dataset" ; dcterms:description "XML dataset containing information on patient registries for rare diseases." ; schema1:url . kgr:orphanet.patientregistriesnetworks a schema1:Product ; rdfs:label "Patient Registries Networks Dataset" ; dcterms:description "XML dataset containing information on patient registry networks for rare diseases." ; schema1:url . kgr:orphanet.portal a schema1:GraphicalInterface ; rdfs:label "Orphanet Portal" ; dcterms:description "Main Orphanet portal for rare disease and orphan drug information" ; schema1:url . kgr:orphanet.researchprojects a schema1:Product ; rdfs:label "National Research Projects Dataset" ; dcterms:description "XML dataset containing information on national research projects focused on rare diseases." ; schema1:url . kgr:orphanet.researchprojectsnetworks a schema1:Product ; rdfs:label "Multinational Research Projects Networks Dataset" ; dcterms:description "XML dataset containing information on multinational research project networks for rare diseases." ; schema1:url . kgr:orthodb.aa_fasta a schema1:Product ; rdfs:label "OrthoDB Protein Sequences" ; dcterms:description "FASTA-formatted amino acid sequences for all genes" ; schema1:url . kgr:orthodb.api.rest a schema1:ProgrammingInterface ; rdfs:label "OrthoDB API" ; dcterms:description "RESTful API for programmatic access to OrthoDB data" ; schema1:url . kgr:orthodb.api.sparql a schema1:ProgrammingInterface ; rdfs:label "OrthoDB SPARQL Endpoint" ; dcterms:description "SPARQL endpoint for querying OrthoDB data" ; schema1:url . kgr:orthodb.cds_fasta a schema1:Product ; rdfs:label "OrthoDB CDS Sequences" ; dcterms:description "FASTA-formatted coding sequences for all genes" ; schema1:url . kgr:orthodb.gene_xrefs a schema1:MappingProduct ; rdfs:label "OrthoDB Gene Cross-references" ; dcterms:description "Tab-separated file with gene cross-references to other databases" ; schema1:url . kgr:orthodb.genes a schema1:Product ; rdfs:label "OrthoDB Genes Data" ; dcterms:description "Tab-separated file with gene information and annotations" ; schema1:url . kgr:orthodb.og2genes a schema1:MappingProduct ; rdfs:label "OrthoDB OG to Genes Mapping" ; dcterms:description "Tab-separated file mapping orthologous groups to genes" ; schema1:url . kgr:orthodb.og_xrefs a schema1:Product ; rdfs:label "OrthoDB OG Functional Annotations" ; dcterms:description "Tab-separated file with orthologous group functional annotations including GO, COG, and InterPro" ; schema1:url . kgr:orthodb.ogs a schema1:Product ; rdfs:label "OrthoDB Orthologous Groups" ; dcterms:description "Tab-separated file with information about orthologous groups" ; schema1:url . kgr:orthodb.site a schema1:GraphicalInterface ; rdfs:label "OrthoDB Web Interface" ; dcterms:description "Web interface for exploring OrthoDB data" ; schema1:url . kgr:orthodb.species a schema1:Product ; rdfs:label "OrthoDB Species Data" ; dcterms:description "Tab-separated file with species information based on NCBI taxonomy" ; schema1:url . kgr:osv.website a schema1:GraphicalInterface ; rdfs:label "OSV website" ; dcterms:description "Web interface and API for the OSV open-source vulnerability database" ; schema1:url . kgr:ovae.kg-bioportal a schema1:GraphProduct ; rdfs:label "OVAE KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Ontology of Vaccine Adverse Events (OVAE), produced by KG-Bioportal from the BioPortal submission. The archive contains OVAE_nodes.tsv and OVAE_edges.tsv." ; schema1:url . kgr:ovae.owl a schema1:OntologyProduct ; rdfs:label "ovae.owl" ; dcterms:description "Ontology of Vaccine Adverse Events in OWL format" ; schema1:url . kgr:owlsim.owltools a schema1:ProcessProduct ; rdfs:label "OWLTools Source Repository" ; dcterms:description "OWLTools Java library and command-line tools historically associated with OWLSim workflows" ; schema1:url . kgr:owlsim.rest a schema1:ProgrammingInterface ; rdfs:label "OWLSim v3 REST Service" ; dcterms:description "Local Dropwizard REST service documented by OWLSim v3 for ontology profile matching and matcher discovery" ; schema1:url . kgr:owlsim.v3 a schema1:ProcessProduct ; rdfs:label "OWLSim v3 Source Repository" ; dcterms:description "Java source repository for OWLSim v3 ontology-based profile matching and semantic similarity services" ; schema1:url . kgr:oxo.portal a schema1:GraphicalInterface ; rdfs:label "OxO Web Interface" ; dcterms:description "Web-based interface for searching and browsing ontology cross-references and mappings" ; schema1:url . kgr:p3db.datasets a schema1:Product ; rdfs:label "P3DB Plant Phosphorylation Datasets" ; dcterms:description "P3DB study and organism datasets for plant protein phosphorylation, including phosphorylation sites, peptides, substrate proteins, and associated study metadata." ; schema1:url . kgr:p3db.portal a schema1:GraphicalInterface ; rdfs:label "P3DB Web Portal" ; dcterms:description "P3DB V5.0 web portal for searching plant phosphorylation peptides and sites, browsing kinases and organisms, and using PTM peptide BLAST tools." ; schema1:url . kgr:p3db.ptm-search a schema1:ProcessProduct ; rdfs:label "P3DB PTM Search and BLAST Tools" ; dcterms:description "P3DB PTM peptide BLAST and search tools for querying plant phosphopeptides and phosphorylation sites by sequence or accession." ; schema1:url . kgr:pacer.case-locator a schema1:Product ; rdfs:label "PACER Case/Docket Records Access" ; dcterms:description "The PACER Case Locator is the national index and access point for federal court case and docket records, allowing searches across U.S. district, bankruptcy, and appellate courts for dockets, case summaries, and filed documents. Access is subject to PACER per-page usage fees." ; schema1:url . kgr:pankbase.api a schema1:ProgrammingInterface ; rdfs:label "PanKBase Data Library API" ; dcterms:description "Programming interface for accessing contents of the PanKbase Data Portal" ; schema1:url . kgr:pankbase.graph a schema1:GraphProduct ; rdfs:label "PanKGraph" ; dcterms:description "Knowledge graph representation of human pancreas and diabetes data" ; schema1:url . kgr:pankbase.graph.api a schema1:ProgrammingInterface ; rdfs:label "PanKGraph API" ; dcterms:description "Programming interface for exploring the PanKGraph" ; schema1:url . kgr:pankbase.graph.site a schema1:GraphicalInterface ; rdfs:label "PanKGraph Site" ; dcterms:description "Graphical interface for exploring the PanKGraph" ; schema1:url . kgr:pankgraph.portal a schema1:GraphicalInterface ; rdfs:label "PanKgraph Explorer" ; dcterms:description "Interactive PanKgraph web application for exploring pancreas-focused relationships and QTL results." ; schema1:url . kgr:pankgraph.sparql a schema1:ProgrammingInterface ; rdfs:label "PanKgraph SPARQL" ; dcterms:description "SPARQL endpoint for PanKgraph" ; schema1:url . kgr:pankgraph.tpf a schema1:ProgrammingInterface ; rdfs:label "PanKgraph TPF" ; dcterms:description "Triple Pattern Fragments endpoint for PanKgraph" ; schema1:url . kgr:panorama-public.code a schema1:ProcessProduct ; rdfs:label "Panorama Public Source Code" ; dcterms:description "Source code of the LabKey Server modules behind Panorama Public, including the panoramapublic module (submission, ProteomeXchange announcement and data license handling) in the MacCossLabModules repository. The targetedms module that stores Skyline documents lives in LabKey/targetedms." ; schema1:url . kgr:panorama-public.docs a schema1:DocumentationProduct ; rdfs:label "Panorama Public Documentation" ; dcterms:description "PanoramaWeb documentation for Panorama Public, including how to submit Skyline datasets and how ProteomeXchange identifiers are assigned." ; schema1:url . kgr:panorama-public.download-docs a schema1:DocumentationProduct ; rdfs:label "Panorama Public Download Instructions" ; dcterms:description "Instructions for downloading Skyline documents and raw data from public datasets, in a web browser or over WebDAV." ; schema1:url . kgr:panorama-public.portal a schema1:GraphicalInterface ; rdfs:label "Panorama Public Web Portal" ; dcterms:description "Panorama Public project page on PanoramaWeb, listing public datasets by year with Skyline documents, chromatograms, peptide and small molecule results, and links to ProteomeXchange identifiers." ; schema1:url . kgr:panorama-public.webdav a schema1:Product ; rdfs:label "Panorama Public WebDAV Data" ; dcterms:description "WebDAV root of the Panorama Public project. Each dataset folder holds the Skyline documents (.sky.zip) and the raw data files uploaded with it, which can be fetched with WebDAV clients such as CyberDuck or WinSCP using the per-dataset credentials shown in the Raw Data tab." ; schema1:url . kgr:pao.obo a schema1:OntologyProduct ; rdfs:label "pao.obo" ; dcterms:description "OBO edition of the plant anatomy content. The original Plant Anatomy Ontology OBO PURL no longer resolves; product_url now points to the Plant Ontology (PO), which superseded and absorbed the plant anatomy content." ; schema1:url . kgr:pao.owl a schema1:OntologyProduct ; rdfs:label "pao.owl" ; dcterms:description "OWL edition of the plant anatomy content. The original Plant Anatomy Ontology OBO PURL no longer resolves; product_url now points to the Plant Ontology (PO), which superseded and absorbed the plant anatomy content." ; schema1:url . kgr:pathbank.biopax a schema1:GraphProduct ; rdfs:label "PathBank BioPAX Archive" ; dcterms:description "BioPAX archive of PathBank pathway data from the official downloads page." ; schema1:url . kgr:pathbank.downloads a schema1:Product ; rdfs:label "PathBank Downloads" ; dcterms:description "Download catalog for PathBank tabular pathway files, pathway exchange files, images, and sequence files." ; schema1:url . kgr:pathbank.pathways.csv a schema1:Product ; rdfs:label "PathBank Pathways CSV" ; dcterms:description "CSV download of PathBank pathway subjects and descriptions from the official downloads page." ; schema1:url . kgr:pathbank.portal a schema1:GraphicalInterface ; rdfs:label "PathBank Portal" ; dcterms:description "Interactive web portal for browsing, searching, and analyzing PathBank pathways." ; schema1:url . kgr:pathbank.sbml a schema1:GraphProduct ; rdfs:label "PathBank SBML Archive" ; dcterms:description "SBML archive of PathBank pathway models from the official downloads page." ; schema1:url . kgr:pathophenodb.data a schema1:GraphProduct ; rdfs:label "PathoPhenoDB RDF data, version 3" ; dcterms:description "PathoPhenoDB data containing pathogen-disease and pathogen-phenotype associations" ; schema1:url . kgr:pathophenodb.docs a schema1:DocumentationProduct ; rdfs:label "PathoPhenoDB Help and Downloads" ; dcterms:description "PathoPhenoDB help and download navigation for search, exploration, downloads, and SPARQL access." ; schema1:url . kgr:pathophenodb.web a schema1:GraphicalInterface ; rdfs:label "PathoPhenoDB Web Interface" ; dcterms:description "Web interface for querying and browsing PathoPhenoDB data" ; schema1:url . kgr:pathwaycommons.api a schema1:ProgrammingInterface ; rdfs:label "Pathway Commons REST API" ; dcterms:description "RESTful web service API for programmatic access to Pathway Commons PC v14 data with search, pathway retrieval, graph traversal, and network analysis operations." ; schema1:url . kgr:pathwaycommons.documentation a schema1:DocumentationProduct ; rdfs:label "Pathway Commons Documentation" ; dcterms:description "Comprehensive API documentation, data format specifications, and tutorials for using Pathway Commons data and services" ; schema1:url . kgr:pathwaycommons.web a schema1:GraphicalInterface ; rdfs:label "Pathway Commons Web Interface" ; dcterms:description "Interactive Pathway Commons web interface for browsing, searching, and visualizing integrated biological pathways and molecular interactions." ; schema1:url . kgr:pathwhiz.editor a schema1:GraphicalInterface ; rdfs:label "PathWhiz Pathway Editor" ; dcterms:description "Web interface for creating, editing, and visualizing biological pathway diagrams with automated metabolite structure generation and interactive features" ; schema1:url . kgr:pathwhiz.guest_draw a schema1:GraphicalInterface ; rdfs:label "PathWhiz Guest Draw" ; dcterms:description "Guest drawing interface for trying PathWhiz pathway creation without creating a private account" ; schema1:url . kgr:pathwhiz.guides a schema1:DocumentationProduct ; rdfs:label "PathWhiz User Guides" ; dcterms:description "User guide and help documentation for drawing pathways using PathWhiz" ; schema1:url . kgr:pathwhiz.private_draw a schema1:GraphicalInterface ; rdfs:label "PathWhiz Private Draw" ; dcterms:description "Private drawing interface for creating and managing PathWhiz pathway diagrams with an account" ; schema1:url . kgr:pato.json a schema1:OntologyProduct ; rdfs:label "pato.json" ; dcterms:description "Phenotype And Trait Ontology in JSON format" ; schema1:url . kgr:pato.kg-bioportal a schema1:GraphProduct ; rdfs:label "PATO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Phenotypic Quality Ontology (PATO), produced by KG-Bioportal from the BioPortal submission. The archive contains PATO_nodes.tsv and PATO_edges.tsv." ; schema1:url . kgr:pato.obo a schema1:OntologyProduct ; rdfs:label "pato.obo" ; dcterms:description "Phenotype And Trait Ontology in OBO format" ; schema1:url . kgr:pato.owl a schema1:OntologyProduct ; rdfs:label "pato.owl" ; dcterms:description "Phenotype And Trait Ontology in OWL format" ; schema1:url . kgr:pato.pato-base.owl a schema1:OntologyProduct ; rdfs:label "pato.pato-base.owl" ; dcterms:description "Includes axioms linking to other ontologies, but no imports of those ontologies" ; schema1:url . kgr:pavs-kg.code a schema1:ProcessProduct ; rdfs:label "PAVS Knowledge Graph Pipeline" ; dcterms:description "Pipeline code that normalizes source cohort tables to HPO, MONDO, OMIM and HGVS, annotates variants and genes, generates Phenopackets, and produces the Turtle files loaded into Virtuoso." ; schema1:url . kgr:paxdb.downloads a schema1:Product ; rdfs:label "PaxDb Downloads" ; dcterms:description "Bulk downloads of protein abundance datasets by organism." ; schema1:url . kgr:paxdb.site a schema1:GraphicalInterface ; rdfs:label "PaxDb Website" ; dcterms:description "Web interface for browsing and searching protein abundance data across organisms." ; schema1:url . kgr:pbpko.kg-bioportal a schema1:GraphProduct ; rdfs:label "PBPKO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Physiologically-Based Pharmacokinetic ontology (PBPKO), produced by KG-Bioportal from the BioPortal submission. The archive contains PBPKO_nodes.tsv and PBPKO_edges.tsv." ; schema1:url . kgr:pbpko.owl a schema1:OntologyProduct ; rdfs:label "pbpko.owl" ; dcterms:description "Physiologically-Based Pharmacokinetic Ontology in OWL format" ; schema1:url . kgr:pcl.obo a schema1:OntologyProduct ; rdfs:label "pcl.obo" ; dcterms:description "Provisional Cell Ontology in OBO format" ; schema1:url . kgr:pcl.owl a schema1:OntologyProduct ; rdfs:label "pcl.owl" ; dcterms:description "Provisional Cell Ontology in OWL format" ; schema1:url . kgr:pco.kg-bioportal a schema1:GraphProduct ; rdfs:label "PCO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Population and Community Ontology (PCO), produced by KG-Bioportal from the BioPortal submission. The archive contains PCO_nodes.tsv and PCO_edges.tsv." ; schema1:url . kgr:pco.owl a schema1:OntologyProduct ; rdfs:label "pco.owl" ; dcterms:description "Population and Community Ontology in OWL format" ; schema1:url . kgr:pdb.archive a schema1:Product ; rdfs:label "wwPDB Archive Downloads" ; dcterms:description "Bulk download site for archive files from the worldwide Protein Data Bank." ; schema1:url . kgr:pdb.data-api a schema1:ProgrammingInterface ; rdfs:label "RCSB Data API" ; dcterms:description "Programmatic API for structured retrieval of PDB entry, entity, and assembly data." ; schema1:url . kgr:pdb.portal a schema1:GraphicalInterface ; rdfs:label "RCSB PDB Portal" ; dcterms:description "Web interface for searching and exploring biomolecular 3D structure entries." ; schema1:url . kgr:pdbe.download-service a schema1:Product ; rdfs:label "PDBe Download Service" ; dcterms:description "Downloadable coordinate files, experimental data files, validation reports, FASTA sequences, and small molecule data for PDB entries" ; schema1:url . kgr:pdbe.kb-api a schema1:ProgrammingInterface ; rdfs:label "PDBe-KB Graph API" ; dcterms:description "RESTful API powered by the PDBe-KB graph database, providing programmatic access to structural data and functional annotations" ; schema1:url . kgr:pdbe.kb-ftp a schema1:Product ; rdfs:label "PDBe-KB FTP Archive" ; dcterms:description "FTP archive providing bulk download access to PDBe-KB data files and annotations" ; schema1:url . kgr:pdbe.kb-graph-database.neo4j3 a schema1:GraphProduct ; rdfs:label "PDBe-KB Graph Database for Neo4J 3.5" ; dcterms:description "Neo4j graph database containing integrated PDBe-KB data with PDB entries, chains, entities, residues, and functional annotations. This version (graph.db.tgz) is for Neo4J 3.5." ; schema1:url . kgr:pdbe.kb-graph-database.neo4j4 a schema1:GraphProduct ; rdfs:label "PDBe-KB Graph Database for Neo4J 4" ; dcterms:description "Neo4j graph database containing integrated PDBe-KB data with PDB entries, chains, entities, residues, and functional annotations. This version (neo4j.dump) is for Neo4J 4 and above." ; schema1:url . kgr:pdbe.kb-manual a schema1:DocumentationProduct ; rdfs:label "PDBe-KB User Manual" ; dcterms:description "User guides and documentation for PDBe-KB features and data access" ; schema1:url . kgr:pdbe.kb-portal a schema1:GraphicalInterface ; rdfs:label "PDBe-KB Web Portal" ; dcterms:description "PDBe-KB web portal providing access to enriched 3D structure data with functional annotations, including protein structures, ligand superpositions, and biological context" ; schema1:url . kgr:pdbe.kb-schema a schema1:DocumentationProduct ; rdfs:label "PDBe Graph Database Schema Explorer" ; dcterms:description "Interactive schema explorer for the PDBe-KB Neo4j graph database, showing nodes, relationships, and data structure" ; schema1:url . kgr:pdbe.sifts a schema1:Product ; rdfs:label "SIFTS Residue-level Mapping" ; dcterms:description "SIFTS (Structure Integration with Function, Taxonomy and Sequences) provides residue-level mapping between UniProt and PDB entries" ; schema1:url . kgr:pdro.kg-bioportal a schema1:GraphProduct ; rdfs:label "PDRO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of The Prescription of Drugs Ontology (PDRO), produced by KG-Bioportal from the BioPortal submission. The archive contains PDRO_nodes.tsv and PDRO_edges.tsv." ; schema1:url . kgr:pdro.owl a schema1:OntologyProduct ; rdfs:label "pdro.owl" ; dcterms:description "The Prescription of Drugs Ontology in OWL format" ; schema1:url . kgr:pdsp.data a schema1:Product ; rdfs:label "PDSP Binding Data" ; dcterms:description "Downloadable PDSP Ki values with SMILES codes for receptor binding affinity data on psychoactive compounds" ; schema1:url . kgr:pdsp.data_mining a schema1:GraphicalInterface ; rdfs:label "PDSP Ki Data Mining Tools" ; dcterms:description "PDSP Ki Database data-mining interface for customized searches across Ki records" ; schema1:url . kgr:pdsp.protocols a schema1:DocumentationProduct ; rdfs:label "PDSP Assay Protocols" ; dcterms:description "Screening assay protocols and methodologies" ; schema1:url . kgr:pdsp.web a schema1:GraphicalInterface ; rdfs:label "PDSP Ki Database" ; dcterms:description "Web interface for searching and browsing PDSP Ki Database" ; schema1:url . kgr:pdumdv.kg-bioportal a schema1:GraphProduct ; rdfs:label "PDUMDV KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Platynereis Developmental Stages (PDUMDV), produced by KG-Bioportal from the BioPortal submission. The archive contains PDUMDV_nodes.tsv and PDUMDV_edges.tsv." ; schema1:url . kgr:pdumdv.obo a schema1:OntologyProduct ; rdfs:label "pdumdv.obo" ; dcterms:description "Platynereis Developmental Stages in OBO format" ; schema1:url . kgr:pdumdv.owl a schema1:OntologyProduct ; rdfs:label "pdumdv.owl" ; dcterms:description "Platynereis Developmental Stages in OWL format" ; schema1:url . kgr:peco.obo a schema1:OntologyProduct ; rdfs:label "peco.obo" ; dcterms:description "Plant Experimental Conditions Ontology in OBO format" ; schema1:url . kgr:peco.owl a schema1:OntologyProduct ; rdfs:label "peco.owl" ; dcterms:description "Plant Experimental Conditions Ontology in OWL format" ; schema1:url . kgr:pensoft a "Organization" ; rdfs:label "Pensoft Publishers" . kgr:peptideatlas.builds a schema1:Product ; rdfs:label "PeptideAtlas Build Index" ; dcterms:description "Machine-readable JSON index of all PeptideAtlas builds, with build id, name, description, organism, number of distinct peptides and the URL of each build's download page." ; schema1:url . kgr:peptideatlas.human.coordinates a schema1:Product ; rdfs:label "PeptideAtlas Human Peptide Coordinates" ; dcterms:description "Genome coordinate mapping of peptides in the Human 2026-01 PeptideAtlas build (about 19 GB, uncompressed text)." ; schema1:url . kgr:peptideatlas.human.mysql a schema1:Product ; rdfs:label "PeptideAtlas Human Build MySQL Dump" ; dcterms:description "MySQL dump of the Human 2026-01 PeptideAtlas build (atlas build 607), about 5.8 GB compressed." ; schema1:url . kgr:peptideatlas.human.peptides a schema1:Product ; rdfs:label "PeptideAtlas Human Peptides FASTA" ; dcterms:description "FASTA file of all distinct peptides observed in the Human 2026-01 PeptideAtlas build (atlas build 607)." ; schema1:url . kgr:peptideatlas.human.tables a schema1:Product ; rdfs:label "PeptideAtlas Human Build Tables" ; dcterms:description "Tab-separated tables of the Human 2026-01 PeptideAtlas build (atlas build 607), including peptides, protein identifications and mappings (about 6.8 GB compressed)." ; schema1:url . kgr:peptideatlas.passel a schema1:GraphicalInterface ; rdfs:label "PASSEL" ; dcterms:description "PASSEL (PeptideAtlas SRM Experiment Library), the PeptideAtlas component for submission, browsing and querying of selected reaction monitoring (SRM) experiment results." ; schema1:url . kgr:peptideatlas.portal a schema1:GraphicalInterface ; rdfs:label "PeptideAtlas Portal" ; dcterms:description "PeptideAtlas web portal for browsing builds, searching peptides and proteins, and reaching related ISB proteomics resources." ; schema1:url . kgr:peptideatlas.repository a schema1:GraphicalInterface ; rdfs:label "PeptideAtlas Data Repository" ; dcterms:description "PeptideAtlas data repository, which holds the raw and processed datasets contributed to PeptideAtlas." ; schema1:url . kgr:peptideatlas.search a schema1:GraphicalInterface ; rdfs:label "PeptideAtlas Peptide Search" ; dcterms:description "SBEAMS search interface for querying peptides across PeptideAtlas builds." ; schema1:url . kgr:peptideatlas.srmatlas a schema1:GraphicalInterface ; rdfs:label "SRMAtlas" ; dcterms:description "SRMAtlas, a compendium of targeted proteomics (SRM) assays for the complete human proteome and other organisms, built by the PeptideAtlas team." ; schema1:url . kgr:pf1600.analysis_scripts a schema1:ProcessProduct ; rdfs:label "pf1600 Analysis Scripts" ; dcterms:description "Companion analysis scripts for the pf1600 data note, including phylogenetic coverage and spectral or structural TMAP workflows" ; schema1:url . kgr:pf1600.archive a schema1:Product ; rdfs:label "pf1600 Data Archive" ; dcterms:description "GigaDB supporting data archive for the pf1600 annotated mass spectrometry dataset of 1,600 plant extracts" ; schema1:url . kgr:pf1600.massive_raw a schema1:Product ; rdfs:label "pf1600 MassIVE Raw Data" ; dcterms:description "MassIVE raw LC-MS/MS data for the pf1600 plant extracts library dataset" ; schema1:url . kgr:pfam.a.data a schema1:Product ; rdfs:label "Pfam-A HMM data" ; dcterms:description "The Pfam HMM data for Pfam-A families, used for searching protein sequences against Pfam." ; schema1:url . kgr:pfam.a.fullalignment a schema1:Product ; rdfs:label "Pfam-A Full alignment" ; dcterms:description "Pfam-A Full alignment." ; schema1:url . kgr:pfam.a.models a schema1:Product ; rdfs:label "Pfam-A HMM Library" ; dcterms:description "The Pfam HMM library for Pfam-A families, used for searching protein sequences against Pfam." ; schema1:url . kgr:pfam.a.seedalignment a schema1:Product ; rdfs:label "Pfam-A Seed alignment" ; dcterms:description "Pfam-A Seed alignment." ; schema1:url . kgr:pfam.api a schema1:ProgrammingInterface ; rdfs:label "InterPro API" ; dcterms:description "REST API for programmatic access to Pfam data via the InterPro database." ; schema1:url . kgr:pfam.site a schema1:GraphicalInterface ; rdfs:label "Interface for the Pfam Database" ; dcterms:description "The core Pfam database containing protein families, multiple sequence alignments, and hidden Markov models." ; schema1:url . kgr:pfocr.api a schema1:ProgrammingInterface ; rdfs:label "PFOCR API" ; dcterms:description "JSON endpoints and help documentation for accessing PFOCR extracted pathway figure data programmatically" ; schema1:url . kgr:pfocr.database_repository a schema1:Product ; rdfs:label "PFOCR Database Repository" ; dcterms:description "GitHub repository containing the Jekyll site and database content for PFOCR, including figure metadata in the _figures directory" ; schema1:url . kgr:pfocr.figure_info_json a schema1:Product ; rdfs:label "PFOCR Figure Information JSON" ; dcterms:description "JSON file containing all PFOCR figure information for pathway figures extracted from literature" ; schema1:url . kgr:pfocr.gmt a schema1:Product ; rdfs:label "PFOCR GMT Gene Sets" ; dcterms:description "Current GMT release of PFOCR pathway figure gene sets distributed through WikiPathways data downloads" ; schema1:url . kgr:pfocr.search_json a schema1:Product ; rdfs:label "PFOCR Search JSON" ; dcterms:description "Search metadata JSON used by the PFOCR website for figure, gene, pathway, and keyword search" ; schema1:url . kgr:pfocr.web a schema1:GraphicalInterface ; rdfs:label "PFOCR Web Interface" ; dcterms:description "Web interface for searching and browsing extracted pathway figures" ; schema1:url . kgr:pgdso.owl a schema1:OntologyProduct ; rdfs:label "Plant Growth and Development Stage OWL edition" ; dcterms:description "Canonical OWL edition of the Plant Growth and Development Stage ontology distributed via OBO PURL." ; schema1:url . kgr:pgxmine.code a schema1:ProcessProduct ; rdfs:label "PGxMine Code" ; dcterms:description "Python codebase for extracting pharmacogenomic associations using text mining" ; schema1:url . kgr:pgxmine.collated a schema1:Product ; rdfs:label "PGxMine Collated Associations" ; dcterms:description "Collated chemical-variant associations with citation counts, normalized to PharmGKB, dbSNP, and Entrez identifiers" ; schema1:url . kgr:pgxmine.sentences a schema1:Product ; rdfs:label "PGxMine Sentences" ; dcterms:description "Supporting sentences for chemical-variant associations with publication metadata" ; schema1:url . kgr:pgxmine.viewer a schema1:GraphicalInterface ; rdfs:label "PGxMine Shiny Viewer" ; dcterms:description "Interactive Shiny web application for browsing and filtering text-mined pharmacogenomic associations" ; schema1:url . kgr:pharmacotherapydb.catalog_xlsx a schema1:Product ; rdfs:label "PharmacotherapyDB Catalog Workbook" ; dcterms:description "Excel workbook for the PharmacotherapyDB catalog release" ; schema1:url . kgr:pharmacotherapydb.figshare a schema1:Product ; rdfs:label "PharmacotherapyDB 1.0 Figshare Archive" ; dcterms:description "Figshare archive for PharmacotherapyDB 1.0, the open catalog of drug therapies for disease" ; schema1:url . kgr:pharmdb.portal a schema1:GraphicalInterface ; rdfs:label "PharmDB Portal" ; dcterms:description "Legacy web portal for browsing PharmDB-K integrated pharmacological relationships" ; schema1:url . kgr:pharmebinet.browser a schema1:GraphicalInterface ; rdfs:label "PharMeBINet Web Application" ; dcterms:description "Web application for browsing and querying PharMeBINet." ; schema1:url . kgr:pharmebinet.data-sources a schema1:DocumentationProduct ; rdfs:label "PharMeBINet Data Sources" ; dcterms:description "Data sources documentation page describing the upstream resources integrated into PharMeBINet." ; schema1:url . kgr:pharmgkb.automatedannotations a schema1:Product ; rdfs:label "PharmKB Automated Annotations" ; dcterms:description "Automatically identified possible relationships between variants and drugs from literature" ; schema1:url . kgr:pharmgkb.chemicals a schema1:Product ; rdfs:label "PharmKB Chemicals" ; dcterms:description "Summaries of chemical information annotated by PharmGKB" ; schema1:url . kgr:pharmgkb.clinicalannotations a schema1:Product ; rdfs:label "PharmKB Clinical Annotations" ; dcterms:description "Clinical annotation summaries" ; schema1:url . kgr:pharmgkb.clinicalannotations.loe a schema1:Product ; rdfs:label "PharmKB Clinical Annotations (LOE 1-2)" ; dcterms:description "Level of evidence 1-2 clinical annotation summaries" ; schema1:url . kgr:pharmgkb.clinicalvariants a schema1:Product ; rdfs:label "PharmKB Clinical Variants" ; dcterms:description "List of variant-drug pairs and level of evidence for all clinical annotations" ; schema1:url . kgr:pharmgkb.druglabels a schema1:Product ; rdfs:label "PharmKB Drug Label Annotations" ; dcterms:description "Drug label annotations" ; schema1:url . kgr:pharmgkb.drugs a schema1:Product ; rdfs:label "PharmKB Drugs" ; dcterms:description "Summaries of drug information annotated by PharmGKB" ; schema1:url . kgr:pharmgkb.genes a schema1:Product ; rdfs:label "PharmKB Genes" ; dcterms:description "Summary of gene information used by PharmGKB and annotations" ; schema1:url . kgr:pharmgkb.guidelineannotations a schema1:Product ; rdfs:label "PharmKB Clinical Guideline Annotations" ; dcterms:description "Detailed clinical guideline annotations" ; schema1:url . kgr:pharmgkb.haplotypefrequencies.allofus a schema1:Product ; rdfs:label "PharmKB AllOfUs Biobank Frequencies" ; dcterms:description "Haplotype, phenotype, and activity score frequencies from AllOfUs dataset using PharmCAT" ; schema1:url . kgr:pharmgkb.haplotypefrequencies.ukbb a schema1:Product ; rdfs:label "PharmKB UK Biobank Frequencies" ; dcterms:description "Haplotype frequencies from UK Biobank dataset using PharmCAT" ; schema1:url . kgr:pharmgkb.literatureoccurrences a schema1:Product ; rdfs:label "PharmKB Literature Occurrences" ; dcterms:description "List of objects that occur in PharmGKB literature annotations and pathways" ; schema1:url . kgr:pharmgkb.papers a schema1:Product ; rdfs:label "PharmKB Papers of Interest Archive" ; dcterms:description "Archive of papers of interest from May 2006 to April 2017" ; schema1:url . kgr:pharmgkb.pathways.biopax a schema1:Product ; rdfs:label "PharmKB Pathways (BioPax)" ; dcterms:description "Pathways data in BioPax XML format" ; schema1:url . kgr:pharmgkb.pathways.json a schema1:Product ; rdfs:label "PharmKB Pathways (JSON)" ; dcterms:description "Pathways data in JSON format" ; schema1:url . kgr:pharmgkb.pathways.tsv a schema1:Product ; rdfs:label "PharmKB Pathways (TSV)" ; dcterms:description "Pathways data in TSV format" ; schema1:url . kgr:pharmgkb.phenotypes a schema1:Product ; rdfs:label "PharmKB Phenotypes" ; dcterms:description "Summary of disease and other phenotypes annotated by PharmGKB" ; schema1:url . kgr:pharmgkb.relationships a schema1:Product ; rdfs:label "PharmKB Relationships" ; dcterms:description "Relationships summarized from PharmGKB annotations" ; schema1:url . kgr:pharmgkb.variantannotations a schema1:Product ; rdfs:label "PharmKB Variant Annotations" ; dcterms:description "Variant annotation summary" ; schema1:url . kgr:pharmgkb.variants a schema1:Product ; rdfs:label "PharmKB Variants" ; dcterms:description "Summary of variants annotated by PharmGKB that have been tracked in dbSNP" ; schema1:url . kgr:pharos.api a schema1:ProgrammingInterface ; rdfs:label "Pharos GraphQL API" ; dcterms:description "GraphQL API for programmatic access to Pharos and TCRD data enabling custom queries and integrations" ; schema1:url . kgr:pharos.api.docs a schema1:DocumentationProduct ; rdfs:label "Pharos API Documentation" ; dcterms:description "API documentation and usage examples for the Pharos GraphQL interface" ; schema1:url . kgr:pharos.docs a schema1:DocumentationProduct ; rdfs:label "Pharos Documentation" ; dcterms:description "Comprehensive documentation covering Pharos features, TCRD data structure, Target Development Levels, and data provenance" ; schema1:url . kgr:pharos.frontend_source a schema1:ProcessProduct ; rdfs:label "Pharos Frontend Source" ; dcterms:description "Source repository for the Pharos web frontend maintained by NCATS" ; schema1:url . kgr:pharos.graphql_server_source a schema1:ProcessProduct ; rdfs:label "Pharos GraphQL Server Source" ; dcterms:description "Source repository for the Pharos GraphQL server referenced by the Pharos about page" ; schema1:url . kgr:pharos.portal a schema1:GraphicalInterface ; rdfs:label "Pharos Web Portal" ; dcterms:description "Web interface for searching, browsing, and analyzing protein target information with advanced filtering, visualizations, and data export capabilities across the druggable genome" ; schema1:url . kgr:pharos.tcrd.download a schema1:Product ; rdfs:label "TCRD Database Downloads" ; dcterms:description "Target Central Resource Database (TCRD) downloadable database files containing comprehensive protein target information including druggability classifications, expression data, disease associations, and chemical probe information" ; schema1:url . kgr:phaseskg.knowledge-graph-docs a schema1:DocumentationProduct ; rdfs:label "PHASES KG Documentation" ; dcterms:description "Documentation page describing the HealthyPhases knowledge graph, technical implementation, and provenance-oriented access patterns." ; schema1:url . kgr:phaseskg.sparql a schema1:ProgrammingInterface ; rdfs:label "PHASES KG SPARQL" ; dcterms:description "SPARQL endpoint for PHASES KG" ; schema1:url . kgr:phaseskg.tpf a schema1:ProgrammingInterface ; rdfs:label "PHASES KG TPF" ; dcterms:description "Triple Pattern Fragments endpoint for PHASES KG" ; schema1:url . kgr:pheknowlator.code a schema1:ProcessProduct ; rdfs:label "PheKnowLator code" ; dcterms:description "Code for generating PheKnowLator" ; schema1:url . kgr:pheknowlator.doc a schema1:DocumentationProduct ; rdfs:label "PheKnowLator Wiki" ; dcterms:description "User and developer documentation for PheKnowLator, including build recipes and usage guides" ; schema1:url . kgr:phenio.graph a schema1:GraphProduct ; rdfs:label "KG-Phenio" ; dcterms:description "PHENIO as a KGX graph" ; schema1:url . kgr:phenio.model a schema1:Product ; rdfs:label "phenio" ; dcterms:description "OWL version of phenio" ; schema1:url . kgr:phenomebrowser.web a schema1:GraphicalInterface ; rdfs:label "PhenomeBrowser Web Portal" ; dcterms:description "PhenomeBrowser web portal for searching and browsing drug-phenotype and gene-phenotype associations integrated across species via the PhenomeNET ecosystem." ; schema1:url . kgr:phenopacket-store.release a schema1:Product ; rdfs:label "Phenopacket Store Release" ; dcterms:description "Versioned release of the Phenopacket Store collection of GA4GH phenopackets for rare and Mendelian disease cases, archived on Zenodo." ; schema1:url . kgr:phewascat.phecodes a schema1:Product ; rdfs:label "Phecode 1.2 Maps" ; dcterms:description "Phecode 1.2 definitions and ICD-9/ICD-10-CM mapping files for translating diagnosis codes to phenotypes used in PheWAS analysis" ; schema1:url . kgr:phewascat.phecodex a schema1:Product ; rdfs:label "PhecodeX Maps" ; dcterms:description "PhecodeX version 1.0 extended phenotype grouping metadata and ICD-CM mapping files" ; schema1:url . kgr:phewascat.phetk a schema1:ProcessProduct ; rdfs:label "PheTK" ; dcterms:description "PheTK Python library for PheWAS analysis using Phecode 1.2 and PhecodeX 1.0" ; schema1:url . kgr:phewascat.portal a schema1:GraphicalInterface ; rdfs:label "PheWAS Catalog Portal" ; dcterms:description "Web portal for browsing and accessing PheWAS association results and analysis tools" ; schema1:url . kgr:phewascat.rpackage a schema1:ProgrammingInterface ; rdfs:label "PheWAS R Package" ; dcterms:description "R package for performing PheWAS analysis using the catalog data and methods" ; schema1:url . kgr:phipo.kg-bioportal a schema1:GraphProduct ; rdfs:label "PHIPO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Pathogen Host Interaction Phenotype Ontology (PHIPO), produced by KG-Bioportal from the BioPortal submission. The archive contains PHIPO_nodes.tsv and PHIPO_edges.tsv." ; schema1:url . kgr:phipo.obo a schema1:OntologyProduct ; rdfs:label "phipo.obo" ; dcterms:description "Pathogen Host Interaction Phenotype Ontology in OBO format" ; schema1:url . kgr:phipo.owl a schema1:OntologyProduct ; rdfs:label "phipo.owl" ; dcterms:description "Pathogen Host Interaction Phenotype Ontology in OWL format" ; schema1:url . kgr:phosphat.experimental-sites a schema1:Product ; rdfs:label "PhosPhAt Experimental Sites CSV" ; dcterms:description "Bulk CSV dataset of experimentally identified Arabidopsis phosphorylation sites from PhosPhAt 4.0." ; schema1:url . kgr:phosphat.portal a schema1:GraphicalInterface ; rdfs:label "PhosPhAt Web Portal" ; dcterms:description "PhosPhAt 4.0 web portal for searching Arabidopsis phosphorylation sites, kinase-target relationships, phosphopeptide records, mass spectra, and plant-specific phosphorylation-site predictions." ; schema1:url . kgr:phosphat.predictor a schema1:ProcessProduct ; rdfs:label "PhosPhAt Phosphorylation Site Predictor" ; dcterms:description "PhosPhAt plant-specific phosphorylation-site predictor trained on the experimental Arabidopsis serine, threonine, and tyrosine phosphorylation dataset." ; schema1:url . kgr:phosphat.protein-motif a schema1:Product ; rdfs:label "PhosPhAt Protein with Motif CSV" ; dcterms:description "PhosPhAt protein-with-motif CSV dataset for Arabidopsis phosphoproteins and motif annotations." ; schema1:url . kgr:phosphoelm.portal a schema1:GraphicalInterface ; rdfs:label "Phospho.ELM Web Portal" ; dcterms:description "Phospho.ELM HTTP web portal for searching experimentally verified phosphorylation sites by protein, accession, kinase, phosphopeptide-binding domain, organism group, and output format." ; schema1:url . kgr:phosphoelm.webservice a schema1:ProgrammingInterface ; rdfs:label "Phospho.ELM Web Service" ; dcterms:description "Prototype Phospho.ELM SOAP web service WSDL for programmatic access to Phospho.ELM database functions." ; schema1:url . kgr:phosphositeplus.about a schema1:DocumentationProduct ; rdfs:label "PhosphoSitePlus About & Methods" ; dcterms:description "Methodology and curation overview including data sources and evidence criteria" ; schema1:url . kgr:phosphositeplus.downloads a schema1:Product ; rdfs:label "PhosphoSitePlus Downloads" ; dcterms:description "Bulk data downloads (PTM site tables, kinase–substrate data, regulatory sites, disease-associated mutations) requiring agreement to terms" ; schema1:url . kgr:phosphositeplus.portal a schema1:GraphicalInterface ; rdfs:label "PhosphoSitePlus Portal" ; dcterms:description "Web portal for browsing PTM sites, kinase–substrate relationships, motifs, mutations and protein pages" ; schema1:url . kgr:physiome-model-repository.api a schema1:ProgrammingInterface ; rdfs:label "PMR2 JSON Web Service" ; dcterms:description "JSON web service on the same URLs as the portal. Sending the header Accept application/vnd.physiome.pmr2.json.1 returns Collection+JSON hypermedia for workspaces, exposures and search; application/vnd.physiome.pmr2.json.0 returns plain JSON lists." ; schema1:url . kgr:physiome-model-repository.code a schema1:ProcessProduct ; rdfs:label "PMR2 Source Code" ; dcterms:description "Source code for PMR2, the Plone-based repository software with Git workspace storage that runs the Physiome Model Repository." ; schema1:url . kgr:physiome-model-repository.docs a schema1:DocumentationProduct ; rdfs:label "PMR User Documentation" ; dcterms:description "PMR user documentation covering workspaces, exposures, CellML curation, semantic metadata and the web service." ; schema1:url . kgr:physiome-model-repository.portal a schema1:GraphicalInterface ; rdfs:label "Physiome Model Repository Portal" ; dcterms:description "Web portal for searching, browsing and downloading physiology models, with model views, curation status and links to simulation in OpenCOR." ; schema1:url . kgr:pir.downloads a schema1:Product ; rdfs:label "PIR Downloads" ; dcterms:description "PIR download center exposing FTP-accessible releases for iProClass, PIRSF, PRO, and related PIR-maintained datasets." ; schema1:url . kgr:pir.portal a schema1:GraphicalInterface ; rdfs:label "PIR Portal" ; dcterms:description "Main PIR web interface for navigating databases, search tools, and supporting resources." ; schema1:url . kgr:pirbase.browse a schema1:GraphicalInterface ; rdfs:label "piRBase Browse Interface" ; dcterms:description "Browse interface for exploring piRNAs organized by species" ; schema1:url . kgr:pirbase.cel-sequences a schema1:Product ; rdfs:label "C. elegans piRNA Sequences" ; dcterms:description "FASTA format sequences for C. elegans piRNAs (version 3.0)" ; schema1:url . kgr:pirbase.dme-bed a schema1:Product ; rdfs:label "Drosophila piRNA Coordinates (BDGP6)" ; dcterms:description "Genome coordinates for Drosophila piRNAs on BDGP6 assembly in BED format" ; schema1:url . kgr:pirbase.dme-gold a schema1:Product ; rdfs:label "Drosophila Gold Standard piRNAs" ; dcterms:description "Gold standard Drosophila piRNA sequences with high confidence annotations" ; schema1:url . kgr:pirbase.dme-sequences a schema1:Product ; rdfs:label "Drosophila piRNA Sequences" ; dcterms:description "FASTA format sequences for Drosophila melanogaster piRNAs (version 3.0)" ; schema1:url . kgr:pirbase.dre-sequences a schema1:Product ; rdfs:label "Zebrafish piRNA Sequences" ; dcterms:description "FASTA format sequences for zebrafish piRNAs" ; schema1:url . kgr:pirbase.epigenetics a schema1:GraphicalInterface ; rdfs:label "Epigenetics Interface" ; dcterms:description "Epigenetics interface for exploring methylation and other epigenetic features" ; schema1:url . kgr:pirbase.function a schema1:GraphicalInterface ; rdfs:label "piRNA Function Interface" ; dcterms:description "Function annotation interface for piRNA functional analysis" ; schema1:url . kgr:pirbase.genome a schema1:GraphicalInterface ; rdfs:label "Genome Browser Interface" ; dcterms:description "Genome browser interface for viewing piRNA genomic locations" ; schema1:url . kgr:pirbase.hsa-bed a schema1:Product ; rdfs:label "Human piRNA Coordinates (hg19)" ; dcterms:description "Genome coordinates for human piRNAs on hg19 assembly in BED format" ; schema1:url . kgr:pirbase.hsa-gold a schema1:Product ; rdfs:label "Human Gold Standard piRNAs" ; dcterms:description "Gold standard human piRNA sequences with high confidence annotations" ; schema1:url . kgr:pirbase.hsa-grch38-bed a schema1:Product ; rdfs:label "Human piRNA Coordinates (GRCh38)" ; dcterms:description "Genome coordinates for human piRNAs on GRCh38 assembly in BED format" ; schema1:url . kgr:pirbase.hsa-sequences a schema1:Product ; rdfs:label "Human piRNA Sequences" ; dcterms:description "FASTA format sequences for human piRNAs (version 3.0)" ; schema1:url . kgr:pirbase.mmu-bed a schema1:Product ; rdfs:label "Mouse piRNA Coordinates (GRCm38)" ; dcterms:description "Genome coordinates for mouse piRNAs on GRCm38 assembly in BED format" ; schema1:url . kgr:pirbase.mmu-gold a schema1:Product ; rdfs:label "Mouse Gold Standard piRNAs" ; dcterms:description "Gold standard mouse piRNA sequences with high confidence annotations" ; schema1:url . kgr:pirbase.mmu-sequences a schema1:Product ; rdfs:label "Mouse piRNA Sequences" ; dcterms:description "FASTA format sequences for mouse piRNAs (version 3.0)" ; schema1:url . kgr:pirbase.portal a schema1:GraphicalInterface ; rdfs:label "piRBase Portal" ; dcterms:description "Web portal for searching and browsing piRNA sequences by identifier or keyword" ; schema1:url . kgr:pirbase.rno-sequences a schema1:Product ; rdfs:label "Rat piRNA Sequences" ; dcterms:description "FASTA format sequences for rat piRNAs" ; schema1:url . kgr:pirbase.tools a schema1:GraphicalInterface ; rdfs:label "piRBase Tools" ; dcterms:description "Tools interface for piRNA analysis utilities" ; schema1:url . kgr:pirbase.tutorial a schema1:DocumentationProduct ; rdfs:label "piRBase Tutorial" ; dcterms:description "Tutorial and user manual for piRBase" ; schema1:url . kgr:pirsf.downloads a schema1:Product ; rdfs:label "PIRSF Downloads" ; dcterms:description "Bulk downloads of PIRSF family classification data files." ; schema1:url . kgr:pirsf.site a schema1:GraphicalInterface ; rdfs:label "PIRSF Website" ; dcterms:description "Web interface for browsing and searching the PIRSF protein family classification." ; schema1:url . kgr:pistoia-pgo.core_concepts a schema1:DocumentationProduct ; rdfs:label "PGO Core Concepts (Version 1.0)" ; dcterms:description "List of PGO Version 1.0 core concepts defining essential entities for pharmaceutical R&D data exchange" ; schema1:url . kgr:pistoia-pgo.core_concepts_csv a schema1:Product ; rdfs:label "PGO Core Concepts CSV (Version 1.0)" ; dcterms:description "CSV release of the PGO Version 1.0 core concept list dated 2026-03-20" ; schema1:url . kgr:pistoia-pgo.documentation a schema1:DocumentationProduct ; rdfs:label "PGO Documentation Website" ; dcterms:description "Documentation website for PGO including core concepts, process descriptions, and use cases" ; schema1:url . kgr:pistoia-pgo.github a schema1:OntologyProduct ; rdfs:label "PGO GitHub Repository" ; dcterms:description "GitHub repository containing the PGO core concepts, documentation, and LinkML schemas" ; schema1:url . kgr:pistoia-pgo.use_cases a schema1:DocumentationProduct ; rdfs:label "PGO Use Cases" ; dcterms:description "High-level use cases demonstrating PGO applications in pharmaceutical data exchange" ; schema1:url . kgr:plana.kg-bioportal a schema1:GraphProduct ; rdfs:label "PLANA KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Planarian Anatomy and Developmental Stage Ontolgoy (PLANA), produced by KG-Bioportal from the BioPortal submission. The archive contains PLANA_nodes.tsv and PLANA_edges.tsv." ; schema1:url . kgr:plana.obo a schema1:OntologyProduct ; rdfs:label "plana.obo" ; dcterms:description "planaria-ontology in OBO format" ; schema1:url . kgr:plana.owl a schema1:OntologyProduct ; rdfs:label "plana.owl" ; dcterms:description "planaria-ontology in OWL format" ; schema1:url . kgr:planp.kg-bioportal a schema1:GraphProduct ; rdfs:label "PLANP KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Planarian Phenotype Ontology (PLANP), produced by KG-Bioportal from the BioPortal submission. The archive contains PLANP_nodes.tsv and PLANP_edges.tsv." ; schema1:url . kgr:planp.obo a schema1:OntologyProduct ; rdfs:label "planp.obo" ; dcterms:description "Planarian Phenotype Ontology in OBO format" ; schema1:url . kgr:planp.owl a schema1:OntologyProduct ; rdfs:label "planp.owl" ; dcterms:description "Planarian Phenotype Ontology in OWL format" ; schema1:url . kgr:plant-reactome.api a schema1:ProgrammingInterface ; rdfs:label "Plant Reactome REST API" ; dcterms:description "RESTful Content Service API for programmatic access to pathway data, entities, and structures in JSON format" ; schema1:url . kgr:plant-reactome.portal a schema1:GraphicalInterface ; rdfs:label "Plant Reactome Web Portal" ; dcterms:description "Web portal for browsing, searching, and visualizing plant pathway data with interactive pathway diagrams and comparative analysis tools" ; schema1:url . kgr:plant-reactome.sbgn a schema1:Product ; rdfs:label "Plant Reactome SBGN Diagrams" ; dcterms:description "SBGN format pathway diagrams and pathway descriptions for plant pathway visualization" ; schema1:url . kgr:planteome a schema1:Aggregator, "Organization" ; rdfs:label "Planteome", "Planteome (Oregon State University)" ; dcterms:created "2026-06-18T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "Planteome is an integrated resource that develops and hosts a suite of reference plant ontologies (including the Plant Ontology, Plant Trait Ontology, and Plant Experimental Conditions Ontology) alongside species-specific crop ontologies. It aggregates and cross-references genome and phenotype annotations from many plant species against these common ontologies, enabling comparative genomics and phenomics across taxa. The resource is maintained at Oregon State University and provides an AmiGO-based browser for searching ontology terms, bioentities, and annotations. Planteome serves as the upstream source for derived knowledge graphs such as eco-KG." ; dcterms:identifier "planteome" ; dcterms:isReferencedBy ; dcterms:license ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:eco-kg.graph, kgr:planteome.browser, kgr:planteome.po ; schema1:name "Planteome" ; skos:inScheme "agriculture", "genomics", "organisms", "phenotype", "plants" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:planteome . kgr:planteome.browser a schema1:GraphicalInterface ; rdfs:label "Planteome Ontology Browser" ; dcterms:description "AmiGO-based Planteome ontology browser for searching reference and species-specific plant ontology terms, bioentities, and aggregated genome and phenotype annotations." ; schema1:url . kgr:planteome.po a schema1:OntologyProduct ; rdfs:label "Plant Ontology (PO)" ; dcterms:description "The Plant Ontology (PO), a Planteome reference ontology describing plant anatomy, morphology, and developmental stages, available as an OWL download." ; schema1:url . kgr:plncdb.blast a schema1:GraphicalInterface ; rdfs:label "PLncDB BLAST" ; dcterms:description "BLAST search interface for sequence similarity searches against plant lncRNA database" ; schema1:url . kgr:plncdb.efp-browser a schema1:GraphicalInterface ; rdfs:label "PLncDB eFP Browser" ; dcterms:description "eFP Browser for visualizing tissue-specific expression patterns of individual lncRNAs" ; schema1:url . kgr:plncdb.epexplorer a schema1:GraphicalInterface ; rdfs:label "PLncDB EPexplorer" ; dcterms:description "EPexplorer tool for batch analysis and visualization of lncRNA expression landscapes across tissues" ; schema1:url . kgr:plncdb.ftp a schema1:Product ; rdfs:label "PLncDB FTP Download" ; dcterms:description "FTP download service providing bulk access to lncRNA sequences, annotations, expression data, and epigenetic information" ; schema1:url . kgr:plncdb.jbrowse a schema1:GraphicalInterface ; rdfs:label "PLncDB JBrowse" ; dcterms:description "JBrowse genome browser for visualizing lncRNA locations, expression patterns, and epigenetic modifications" ; schema1:url . kgr:plncdb.portal a schema1:GraphicalInterface ; rdfs:label "PLncDB Web Portal" ; dcterms:description "Web interface for browsing, searching, and accessing plant lncRNA data with multiple search engines and visualization tools" ; schema1:url . kgr:plo.owl a schema1:OntologyProduct ; rdfs:label "Plasmodium life cycle OWL edition" ; dcterms:description "Canonical OWL edition of the Plasmodium Life Cycle Ontology distributed via OBO PURL." ; schema1:url . kgr:pmc.cloud a schema1:Product ; rdfs:label "PMC Cloud Service" ; dcterms:description "PMC Cloud Service providing PMC article datasets, including the Open Access Subset, through the AWS Open Data Sponsorship Program." ; schema1:url . kgr:pmc.eutils a schema1:ProgrammingInterface ; rdfs:label "PMC E-utilities API" ; dcterms:description "NCBI Entrez E-utilities interface for searching and retrieving PMC records through the Entrez database layer." ; schema1:url . kgr:pmc.ftp a schema1:Product ; rdfs:label "PMC FTP Service" ; dcterms:description "PMC FTP service for retrieving file lists and downloadable article files from PMC article datasets, including the Open Access Subset." ; schema1:url . kgr:pmc.oa-service a schema1:ProgrammingInterface ; rdfs:label "PMC OA Web Service API" ; dcterms:description "PMC OA Web Service API for discovering downloadable resources from the PMC Open Access Subset. Retired on 25 August 2026 as part of the PMC Article Dataset Changes announced on 12 February 2026." ; schema1:url . kgr:pmc.oai-pmh a schema1:ProgrammingInterface ; rdfs:label "PMC OAI-PMH Service" ; dcterms:description "PMC OAI-PMH service for harvesting PMC metadata and eligible full-text article XML through the Open Archives Initiative Protocol for Metadata Harvesting." ; schema1:url . kgr:pmc.open-access-subset a schema1:Product ; rdfs:label "PMC Open Access Subset" ; dcterms:description "PMC Open Access Subset containing journal articles and preprints made available under licenses that permit reuse, with automated retrieval through PMC-approved services." ; schema1:url . kgr:pmc.portal a schema1:GraphicalInterface ; rdfs:label "PMC Web Portal" ; dcterms:description "PMC web portal for searching, browsing, and reading free full-text biomedical and life-sciences journal articles archived by NCBI." ; schema1:url . kgr:pmda.e-package-inserts-info a schema1:DocumentationProduct ; rdfs:label "PMDA Electronic Package Inserts Information" ; dcterms:description "PMDA documentation explaining newly introduced electronic package inserts, including electronic browsing of drug, medical device, in vitro diagnostic, and regenerative medical product information." ; schema1:url . kgr:pmda.english-search-index a schema1:GraphicalInterface ; rdfs:label "PMDA English Product Information Index" ; dcterms:description "PMDA English index linking to safety alerts, recalls, review reports, package inserts, and other information for individual products." ; schema1:url . kgr:pmda.iyaku-search a schema1:GraphicalInterface ; rdfs:label "PMDA Prescription Drug Information Search" ; dcterms:description "Japanese PMDA search interface for prescription drug package inserts and related drug safety information." ; schema1:url . kgr:pmda.portal a schema1:GraphicalInterface ; rdfs:label "PMDA English Portal" ; dcterms:description "English PMDA website for regulatory review, safety, health damage relief, and product-related information for drugs, medical devices, and regenerative medical products in Japan." ; schema1:url . kgr:po.kg-bioportal a schema1:GraphProduct ; rdfs:label "PO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Plant Ontology (PO), produced by KG-Bioportal from the BioPortal submission. The archive contains PO_nodes.tsv and PO_edges.tsv." ; schema1:url . kgr:po.obo a schema1:OntologyProduct ; rdfs:label "po.obo" ; dcterms:description "Plant Ontology in OBO format" ; schema1:url . kgr:po.owl a schema1:OntologyProduct ; rdfs:label "po.owl" ; dcterms:description "Plant Ontology in OWL format" ; schema1:url . kgr:pombase.genes a schema1:Product ; rdfs:label "PomBase gene names" ; dcterms:description "Tab-delimited file of systematic ID, primary gene name (where assigned), and all synonyms for each gene" ; schema1:url . kgr:poro.kg-bioportal a schema1:GraphProduct ; rdfs:label "PORO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Porifera Ontology (PORO), produced by KG-Bioportal from the BioPortal submission. The archive contains PORO_nodes.tsv and PORO_edges.tsv." ; schema1:url . kgr:poro.obo a schema1:OntologyProduct ; rdfs:label "poro.obo" ; dcterms:description "Porifera Ontology in OBO format" ; schema1:url . kgr:poro.owl a schema1:OntologyProduct ; rdfs:label "poro.owl" ; dcterms:description "Porifera Ontology in OWL format" ; schema1:url . kgr:ppo.kg-bioportal a schema1:GraphProduct ; rdfs:label "PPO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Plant Phenology Ontology (PPO), produced by KG-Bioportal from the BioPortal submission. The archive contains PPO_nodes.tsv and PPO_edges.tsv." ; schema1:url . kgr:ppo.owl a schema1:OntologyProduct ; rdfs:label "ppo.owl" ; dcterms:description "Plant Phenology Ontology in OWL format" ; schema1:url . kgr:pr.obo a schema1:OntologyProduct ; rdfs:label "pro_reasoned.obo" ; dcterms:description "PRO after reasoning has been applied, OBO format." ; schema1:url . kgr:pr.owl a schema1:OntologyProduct ; rdfs:label "pro_reasoned.owl" ; dcterms:description "PRO after reasoning has been applied, OWL format. Add '.gz' for compressed." ; schema1:url . kgr:predict.article a schema1:DocumentationProduct ; rdfs:label "PREDICT Article" ; dcterms:description "Open-access Molecular Systems Biology article describing the PREDICT drug-indication inference method, its drug-disease gold standard, validation, and personalized medicine application." ; schema1:url . kgr:prefer.json a schema1:OntologyProduct ; rdfs:label "PREFER OBOGraph-JSON format edition" ; dcterms:description "Complete ontology, plus inter-ontology axioms, and imports modules merged in" ; schema1:url . kgr:prefer.kg-bioportal a schema1:GraphProduct ; rdfs:label "PREFER KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Precision Fermentation Ontology (PREFER), produced by KG-Bioportal from the BioPortal submission. The archive contains PREFER_nodes.tsv and PREFER_edges.tsv." ; schema1:url . kgr:prefer.obo a schema1:OntologyProduct ; rdfs:label "prefer obo format edition" ; dcterms:description "Complete ontology, plus inter-ontology axioms, and imports modules merged in" ; schema1:url . kgr:prefer.owl a schema1:OntologyProduct ; rdfs:label "Main PREFER OWL edition" ; dcterms:description "Complete ontology, plus inter-ontology axioms, and imports modules" ; schema1:url . kgr:prefer.prefer-base.json a schema1:OntologyProduct ; rdfs:label "PREFER base module (OBOGraph-JSON version)" ; dcterms:description "complete PREFER but with no imports or external axioms" ; schema1:url . kgr:prefer.prefer-base.obo a schema1:OntologyProduct ; rdfs:label "PREFER base module (OBO version)" ; dcterms:description "complete PREFER but with no imports or external axioms" ; schema1:url . kgr:prefer.prefer-base.owl a schema1:OntologyProduct ; rdfs:label "PREFER base module" ; dcterms:description "complete PREFER but with no imports or external axioms" ; schema1:url . kgr:preppi.search a schema1:GraphicalInterface ; rdfs:label "PrePPI Search Interface" ; dcterms:description "Web search interface for querying PrePPI predicted protein-protein interactions by UniProt accession or gene name" ; schema1:url . kgr:pride-cv.ols a schema1:GraphicalInterface ; rdfs:label "PRIDE CV in OLS" ; dcterms:description "Ontology Lookup Service (OLS4) page for browsing and searching the PRIDE Controlled Vocabulary, including its imported terms." ; schema1:url . kgr:pride-cv.ols-api a schema1:ProgrammingInterface ; rdfs:label "PRIDE CV OLS API" ; dcterms:description "OLS4 REST API endpoint for the PRIDE Controlled Vocabulary, returning ontology metadata and links to its terms." ; schema1:url . kgr:pride-cv.repository a schema1:Product ; rdfs:label "PRIDE ontology GitHub repository" ; dcterms:description "GitHub repository for the PRIDE ontology, with the OBO and OWL files, validation workflows, PRIDE annotation files and contribution guidelines." ; schema1:url . kgr:pride.api a schema1:ProgrammingInterface ; rdfs:label "PRIDE Archive REST API" ; dcterms:description "PRIDE Archive REST API (version 3) for project, file, protein and peptide metadata, with Swagger documentation." ; schema1:url . kgr:pride.code a schema1:ProcessProduct ; rdfs:label "PRIDE Archive Source Code" ; dcterms:description "GitHub organization holding the source code of the PRIDE Archive web services, web interface, submission tool and supporting libraries." ; schema1:url . kgr:pride.docs a schema1:DocumentationProduct ; rdfs:label "PRIDE Documentation" ; dcterms:description "PRIDE documentation covering data submission, the submission tool, dataset access, the REST API and related PRIDE resources." ; schema1:url . kgr:pride.ftp a schema1:Product ; rdfs:label "PRIDE Archive FTP" ; dcterms:description "FTP archive of all public PRIDE datasets, organized by publication year and month and then by PXD accession, holding raw instrument files, peak lists, search engine results and other submitted files." ; schema1:url . kgr:pride.portal a schema1:GraphicalInterface ; rdfs:label "PRIDE Archive Web Portal" ; dcterms:description "PRIDE Archive web portal for searching, browsing and downloading public proteomics datasets by accession, keyword, organism, instrument and other metadata." ; schema1:url . kgr:prism.api a schema1:ProgrammingInterface ; rdfs:label "DepMap API (PRISM data)" ; dcterms:description "API access to PRISM drug screening data" ; schema1:url . kgr:prism.portal a schema1:GraphicalInterface ; rdfs:label "PRISM Repurposing Resource" ; dcterms:description "Web interface for exploring the PRISM Repurposing drug-screening resource through DepMap" ; schema1:url . kgr:probe-miner.website a schema1:GraphicalInterface ; rdfs:label "Probe Miner Web Resource" ; dcterms:description "Public web interface for searching and browsing objective, data-driven assessments of chemical probes for protein targets, with per-compound scores across six quantitative chemical probe quality criteria." ; schema1:url . kgr:proco.kg-bioportal a schema1:GraphProduct ; rdfs:label "PROCO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Process Chemistry Ontology (PROCO), produced by KG-Bioportal from the BioPortal submission. The archive contains PROCO_nodes.tsv and PROCO_edges.tsv." ; schema1:url . kgr:proco.owl a schema1:OntologyProduct ; rdfs:label "proco.owl" ; dcterms:description "Process Chemistry Ontology in OWL format" ; schema1:url . kgr:prodo.site a schema1:GraphicalInterface ; rdfs:label "Prodo Laboratories Website" ; dcterms:description "Product catalog and ordering site for Prodo Laboratories human islet and pancreatic tissue products." ; schema1:url . kgr:progenomes.pg4.ncbi-taxonomy a schema1:Product ; rdfs:label "proGenomes v4 NCBI Taxonomy Table" ; dcterms:description "NCBI taxonomy mapping table for proGenomes v4 entries." ; schema1:url . kgr:progenomes.pg4.rep-proteins a schema1:Product ; rdfs:label "proGenomes v4 Representative Proteins" ; dcterms:description "Representative protein FASTA set for proGenomes v4." ; schema1:url . kgr:progenomes.portal a schema1:GraphicalInterface ; rdfs:label "proGenomes Portal" ; dcterms:description "Main proGenomes web interface for exploring microbial genomes and clusters." ; schema1:url . kgr:progeny.docs a schema1:DocumentationProduct ; rdfs:label "PROGENy Documentation" ; dcterms:description "Documentation website for PROGENy with installation instructions, vignettes, and function reference" ; schema1:url . kgr:progeny.rpackage a schema1:ProgrammingInterface ; rdfs:label "PROGENy R Package" ; dcterms:description "R package containing pathway signatures for 14 signaling pathways in human and mouse, available through Bioconductor" ; schema1:url . kgr:prokn.api a schema1:ProgrammingInterface ; rdfs:label "Protein Knowledge Network REST API" ; dcterms:description "REST API for the Protein Knowledge Network" ; schema1:url . kgr:prokn.downloads a schema1:Product ; rdfs:label "Protein Knowledge Network Downloads" ; dcterms:description "Bulk downloads page listing current ProKN node and edge CSV exports with file sizes and update timestamps" ; schema1:url . kgr:prokn.explorer a schema1:GraphicalInterface ; rdfs:label "Protein Knowledge Network Explorer" ; dcterms:description "Web explorer for the Protein Knowledge Network with interactive graph browsing" ; schema1:url . kgr:prokn.mcp a schema1:ProgrammingInterface ; rdfs:label "ProKN MCP Interface" ; dcterms:description "Hosted Model Context Protocol endpoint for MCP-compatible clients accessing ProKN" ; schema1:url . kgr:prokn.sparql a schema1:ProgrammingInterface ; rdfs:label "Protein Knowledge Network SPARQL" ; dcterms:description "SPARQL endpoint for Protein Knowledge Network" ; schema1:url . kgr:prokn.tpf a schema1:ProgrammingInterface ; rdfs:label "Protein Knowledge Network TPF" ; dcterms:description "Triple Pattern Fragments endpoint for Protein Knowledge Network" ; schema1:url . kgr:propreo.kg-bioportal a schema1:GraphProduct ; rdfs:label "PROPREO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Proteomics Data and Process Provenance Ontology (PROPREO), produced by KG-Bioportal from the BioPortal submission. The archive contains PROPREO_nodes.tsv and PROPREO_edges.tsv." ; schema1:url . kgr:propreo.owl a schema1:OntologyProduct ; rdfs:label "Proteomics data and process provenance OWL edition" ; dcterms:description "Canonical OWL edition of the PROPREO ontology distributed via OBO PURL." ; schema1:url . kgr:prosite.downloads a schema1:Product ; rdfs:label "PROSITE Downloads" ; dcterms:description "Bulk downloads of PROSITE data files (patterns, profiles, and documentation)." ; schema1:url . kgr:prosite.scanprosite a schema1:GraphicalInterface ; rdfs:label "ScanProsite" ; dcterms:description "Tool for scanning protein sequences against PROSITE patterns and profiles." ; schema1:url . kgr:prosite.site a schema1:GraphicalInterface ; rdfs:label "PROSITE Website" ; dcterms:description "Web interface for browsing and searching PROSITE documentation entries, patterns, and profiles." ; schema1:url . kgr:protcid.database a schema1:Product ; rdfs:label "ProtCID Database" ; dcterms:description "Database containing protein-protein interfaces, domain-domain interfaces, protein-peptide interfaces, and protein-ligand interactions based on structural data from the PDB." ; schema1:url . kgr:protcid.docs a schema1:DocumentationProduct ; rdfs:label "ProtCID Help and Browse" ; dcterms:description "ProtCID help and browsing pages for common-interface searches, Pfam-based browsing, and interpretation guidance." ; schema1:url . kgr:protcid.site a schema1:GraphicalInterface ; rdfs:label "ProtCID Web Interface" ; dcterms:description "Web interface for searching and visualizing protein interaction data from ProtCID." ; schema1:url . kgr:proteomexchange.guidelines a schema1:DocumentationProduct ; rdfs:label "ProteomeXchange Guidelines" ; dcterms:description "ProteomeXchange data submission and dissemination guidelines for partner repositories and submitters." ; schema1:url . kgr:proteomexchange.portal a schema1:GraphicalInterface ; rdfs:label "ProteomeXchange Website" ; dcterms:description "ProteomeXchange consortium website describing member repositories, data submission guidelines, subscription options and consortium publications." ; schema1:url . kgr:proteomexchange.proxi-api a schema1:ProgrammingInterface ; rdfs:label "ProteomeCentral PROXI API" ; dcterms:description "ProteomeCentral implementation of the PROXI (Proteomics Expression Interface) web service, an OpenAPI endpoint for querying datasets, libraries, spectra and peptides with filtering, free-text search, facets and pagination. The URL points to the Swagger UI documentation." ; schema1:url . kgr:proteomexchange.rss a schema1:Product ; rdfs:label "ProteomeXchange Announcements RSS Feed" ; dcterms:description "RSS feed of announcements of new public ProteomeXchange datasets, published through the ProteomeXchange Google group." ; schema1:url . kgr:proteomexchange.submission-docs a schema1:DocumentationProduct ; rdfs:label "ProteomeXchange Submission Documentation" ; dcterms:description "Instructions for submitting datasets to ProteomeXchange through its member repositories." ; schema1:url . kgr:proteomicsdb.api a schema1:ProgrammingInterface ; rdfs:label "ProteomicsDB API" ; dcterms:description "REST API (with Swagger documentation) for programmatic access to ProteomicsDB data." ; schema1:url . kgr:proteomicsdb.site a schema1:GraphicalInterface ; rdfs:label "ProteomicsDB Website" ; dcterms:description "Web interface for exploring protein expression, peptides, and analysis tools across organisms." ; schema1:url . kgr:proteopedia.site a schema1:GraphicalInterface ; rdfs:label "Proteopedia Website" ; dcterms:description "Collaborative wiki with interactive 3D pages for proteins and other biomolecules." ; schema1:url . kgr:proton.browser a schema1:GraphicalInterface ; rdfs:label "PROTON Browser on TriplyDB" ; dcterms:description "Interactive browser for exploring and navigating PROTON ontology structure, classes, and relationships on TriplyDB platform" ; schema1:url . kgr:proton.documentation a schema1:DocumentationProduct ; rdfs:label "PROTON Documentation" ; dcterms:description "Comprehensive technical documentation and class reference for PROTON ontology covering all modules, properties, and usage guidelines" ; schema1:url . kgr:prov-o.owl a schema1:OntologyProduct ; rdfs:label "PROV-O OWL" ; dcterms:description "OWL serialization of the W3C PROV Ontology." ; schema1:url . kgr:prov-o.spec a schema1:DocumentationProduct ; rdfs:label "PROV-O Specification" ; dcterms:description "W3C Recommendation for PROV-O, the PROV Ontology." ; schema1:url . kgr:psdo.kg-bioportal a schema1:GraphProduct ; rdfs:label "PSDO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Performance Summary Display Ontology (PSDO), produced by KG-Bioportal from the BioPortal submission. The archive contains PSDO_nodes.tsv and PSDO_edges.tsv." ; schema1:url . kgr:psdo.owl a schema1:OntologyProduct ; rdfs:label "psdo.owl" ; dcterms:description "Performance Summary Display Ontology in OWL format" ; schema1:url . kgr:pso.kg-bioportal a schema1:GraphProduct ; rdfs:label "PLANTSO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Plant Stress Ontology (PLANTSO), produced by KG-Bioportal from the BioPortal submission. The archive contains PLANTSO_nodes.tsv and PLANTSO_edges.tsv." ; schema1:url . kgr:pso.obo a schema1:OntologyProduct ; rdfs:label "pso.obo" ; dcterms:description "Plant Stress Ontology in OBO format" ; schema1:url . kgr:pso.owl a schema1:OntologyProduct ; rdfs:label "pso.owl" ; dcterms:description "Plant Stress Ontology in OWL format" ; schema1:url . kgr:psygenet.psygenet2r a schema1:ProcessProduct ; rdfs:label "psygenet2r R Package" ; dcterms:description "R/Bioconductor package for querying PsyGeNET and performing comorbidity studies with PsyGeNET data" ; schema1:url . kgr:ptmd.downloads a schema1:Product ; rdfs:label "PTMD Download Page" ; dcterms:description "PTMD 2.0 download page with PTM-disease association files by modification type, regulation type, tissue location, and annotation source" ; schema1:url . kgr:ptmd.upregulation_pda a schema1:Product ; rdfs:label "PTMD Up-Regulation PTM-Disease Associations" ; dcterms:description "PTMD 2.0 PTM-disease association subset for up-regulated PTM events in disease" ; schema1:url . kgr:ptmd.web a schema1:GraphicalInterface ; rdfs:label "PTMD Web Resource" ; dcterms:description "PTMD 2.0 website for browsing and searching human post-translational modification disease association data." ; schema1:url . kgr:pubchem.bioassay.asn a schema1:Product ; rdfs:label "PubChem BioAssay ASN" ; dcterms:description "PubChem BioAssay data in ASN.1 format" ; schema1:url . kgr:pubchem.bioassay.xml a schema1:Product ; rdfs:label "PubChem BioAssay XML" ; dcterms:description "PubChem BioAssay data in XML format" ; schema1:url . kgr:pubchem.compounds.asn a schema1:Product ; rdfs:label "PubChem Compounds ASN" ; dcterms:description "Compound structures, properties, and other information in ASN.1 format" ; schema1:url . kgr:pubchem.compounds.sdf a schema1:Product ; rdfs:label "PubChem Compounds SDF" ; dcterms:description "Compound structures, properties, and other information in SDF format" ; schema1:url . kgr:pubchem.pug.rest a schema1:ProgrammingInterface ; rdfs:label "PubChem PUG REST API" ; dcterms:description "The PubChem Power User Gateway (PUG) REST service" ; schema1:url . kgr:pubmed.advanced.search a schema1:GraphicalInterface ; rdfs:label "PubMed Advanced Search" ; dcterms:description "Advanced search builder with field-specific queries, search history, and Boolean operators for complex literature searches" ; schema1:url . kgr:pubmed.baseline a schema1:Product ; rdfs:label "PubMed Annual Baseline Files" ; dcterms:description "Annual baseline set of PubMed citation records in XML format providing complete snapshot of the MEDLINE database" ; schema1:url . kgr:pubmed.clinical.queries a schema1:GraphicalInterface ; rdfs:label "PubMed Clinical Queries" ; dcterms:description "Specialized clinical queries interface with pre-defined search filters for clinical studies, systematic reviews, and medical genetics" ; schema1:url . kgr:pubmed.dtd a schema1:DocumentationProduct ; rdfs:label "PubMed DTD Documentation" ; dcterms:description "PubMed DTD documentation with annotations and examples for all XML elements and attributes" ; schema1:url . kgr:pubmed.eutils a schema1:ProgrammingInterface ; rdfs:label "PubMed E-utilities API" ; dcterms:description "Entrez Programming Utilities (E-utilities) API providing programmatic access to PubMed data with eight server-side programs for querying and retrieving citations" ; schema1:url . kgr:pubmed.help a schema1:DocumentationProduct ; rdfs:label "PubMed Help Documentation" ; dcterms:description "Comprehensive PubMed help documentation including user guides, FAQs, tutorials, and search tips" ; schema1:url . kgr:pubmed.portal a schema1:GraphicalInterface ; rdfs:label "PubMed Web Portal" ; dcterms:description "Web interface for searching and browsing PubMed's 39+ million biomedical literature citations with advanced search, clinical queries, and MeSH database integration" ; schema1:url . kgr:pubmed.updates a schema1:Product ; rdfs:label "PubMed Daily Update Files" ; dcterms:description "Daily update files containing new, revised, and deleted PubMed citations in XML format" ; schema1:url . kgr:pubtator.api a schema1:ProgrammingInterface ; rdfs:label "PubTator 3.0 API" ; dcterms:description "PubTator 3.0 API for programmatic access to entity annotation, relation search, and other features" ; schema1:url . kgr:pubtator.bulk a schema1:Product ; rdfs:label "PubTator 3.0 Bulk Downloads" ; dcterms:description "Bulk downloads of annotated articles and extraction summaries for entities and relations" ; schema1:url . kgr:pubtator.site a schema1:GraphicalInterface ; rdfs:label "PubTator 3.0 Web Interface" ; dcterms:description "Web interface for exploring PubTator annotations with semantic and relation search capabilities" ; schema1:url . kgr:pw.kg-bioportal a schema1:GraphProduct ; rdfs:label "PW KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Pathway Ontology (PW), produced by KG-Bioportal from the BioPortal submission. The archive contains PW_nodes.tsv and PW_edges.tsv." ; schema1:url . kgr:pw.obo a schema1:OntologyProduct ; rdfs:label "pw.obo" ; dcterms:description "Pathway ontology in OBO format" ; schema1:url . kgr:pw.owl a schema1:OntologyProduct ; rdfs:label "pw.owl" ; dcterms:description "Pathway ontology in OWL format" ; schema1:url . kgr:pypi.website a schema1:GraphicalInterface ; rdfs:label "PyPI website" ; dcterms:description "Web interface and public registry for browsing and retrieving Python packages" ; schema1:url . kgr:qptm.web a schema1:Product ; rdfs:label "qPTM Web Resource" ; dcterms:description "qPTM website for quantitative post-translational modification data." ; schema1:url . kgr:rampdb.api a schema1:ProgrammingInterface ; rdfs:label "RaMP-DB API" ; dcterms:description "Programmatic interface for accessing RaMP-DB integrated metabolomic pathway data and performing enrichment analyses." ; schema1:url . kgr:rapdb.downloads a schema1:Product ; rdfs:label "RAP-DB Downloads" ; dcterms:description "Bulk download area providing RAP-DB annotation files, including the RAP-MSU locus identifier mapping table and IRGSP-1.0-based gene annotation data." ; schema1:url . kgr:rapdb.portal a schema1:GraphicalInterface ; rdfs:label "RAP-DB Portal" ; dcterms:description "Interactive RAP-DB web portal for browsing and searching curated Oryza sativa genome annotation, gene structures, and functional information." ; schema1:url . kgr:rbo.obo a schema1:OntologyProduct ; rdfs:label "rbo.obo" ; dcterms:description "Radiation Biology Ontology in OBO format" ; schema1:url . kgr:rbo.owl a schema1:OntologyProduct ; rdfs:label "rbo.owl" ; dcterms:description "Radiation Biology Ontology in OWL format" ; schema1:url . kgr:rbo.rbo-base.json a schema1:OntologyProduct ; rdfs:label "rbo.rbo-base.json" ; dcterms:description "Radiation Biology Ontology in JSON format" ; schema1:url . kgr:rbo.rbo-base.obo a schema1:OntologyProduct ; rdfs:label "rbo.rbo-base.obo" ; dcterms:description "Radiation Biology Ontology in OBO format" ; schema1:url . kgr:rbo.rbo-base.owl a schema1:OntologyProduct ; rdfs:label "rbo.rbo-base.owl" ; dcterms:description "Radiation Biology Ontology in OWL format" ; schema1:url . kgr:rdbridge.literaturedatabase a schema1:Product ; rdfs:label "RDBridge Literature Database" ; dcterms:description "Curated collection of 235,631 scientific publications related to rare diseases" . kgr:rdbridge.webinterface a schema1:GraphicalInterface ; rdfs:label "RDBridge Web Interface" ; dcterms:description "Graphical interface for exploring the RDBridge knowledge graph of rare diseases" ; schema1:url . kgr:rdf-portal.data-submission a schema1:DocumentationProduct ; rdfs:label "RDF Portal Data Submission Guide" ; dcterms:description "Guidelines for submitting RDF datasets to RDF Portal, which DBCLS reviews against its RDF guidelines before publication." ; schema1:url . kgr:rdf-portal.datasets a schema1:GraphicalInterface ; rdfs:label "RDF Portal Dataset Catalog" ; dcterms:description "Dataset catalog listing every hosted RDF dataset with tags, data provider, license and links to per-dataset detail pages. The dataset metadata are embedded in the page as JSON; no separate machine-readable dataset list was found." ; schema1:url . kgr:rdf-portal.manual a schema1:DocumentationProduct ; rdfs:label "RDF Portal Manual" ; dcterms:description "RDF Portal user manual, covering dataset browsing, SPARQL endpoints, GraphQL, TogoMCP, statistics, downloads, tutorials and licensing questions." ; schema1:url . kgr:rdf-portal.mcp a schema1:ProgrammingInterface ; rdfs:label "TogoMCP" ; dcterms:description "TogoMCP, a Model Context Protocol server from DBCLS that gives AI agents keyword search, SPARQL querying and TogoID identifier conversion over databases hosted on RDF Portal. Source code is at https://github.com/dbcls/togomcp." ; schema1:url . kgr:rdf-portal.ntriples a schema1:GraphProduct ; rdfs:label "RDF Portal N-Triples Downloads" ; dcterms:description "Bulk downloads of hosted RDF datasets as N-Triples, one directory per dataset with dated and latest releases (files mostly gzip-compressed). Turtle copies of some datasets are under https://rdfportal.org/pub/turtle/." ; schema1:url . kgr:rdf-portal.portal a schema1:GraphicalInterface ; rdfs:label "RDF Portal Website" ; dcterms:description "RDF Portal website, with a browsable catalog of hosted RDF datasets, each with provenance, license, version, statistics and SPARQL example queries." ; schema1:url . kgr:rdf-portal.sparql.kero a schema1:ProgrammingInterface ; rdfs:label "RDF Portal KERO SPARQL Endpoint" ; dcterms:description "SPARQL endpoint for the DBKERO RDF dataset." ; schema1:url . kgr:rdp.classifier a schema1:ProcessProduct ; rdfs:label "RDP Classifier (stand-alone)" ; dcterms:description "Stand-alone version of the RDP Classifier for taxonomic assignment of rRNA sequences. Available via Sourceforge." ; schema1:url . kgr:rdp.tools a schema1:ProcessProduct ; rdfs:label "RDP Tools (command-line)" ; dcterms:description "Command-line tools for rRNA sequence analysis, installation instructions and Docker images available via community tutorials." ; schema1:url . kgr:re3data.api a schema1:ProgrammingInterface ; rdfs:label "re3data API" ; dcterms:description "Versioned REST API (with a separate OpenSearch implementation) returning re3data repository metadata as XML; for example, /api/v1/repositories lists all repositories and /api/v1/repository/{id} returns a full record in the re3data metadata schema." ; schema1:url . kgr:re3data.api-docs a schema1:DocumentationProduct ; rdfs:label "re3data API Documentation" ; dcterms:description "re3data API documentation describing the OpenSearch and RESTful interfaces, versioning and the metadata schema versions served." ; schema1:url . kgr:re3data.export a schema1:Product ; rdfs:label "re3data Repositories XML Export" ; dcterms:description "Daily export of all online re3data repository records as XML files in a single zip archive (about 7 MB), with monthly archived snapshots also listed on the data download page." ; schema1:url . kgr:re3data.portal a schema1:GraphicalInterface ; rdfs:label "re3data Web Portal" ; dcterms:description "Web portal for searching and browsing re3data repository records by subject, country, content type and other facets, and for suggesting new repositories." ; schema1:url . kgr:re3data.schema a schema1:DataModelProduct ; rdfs:label "re3data Metadata Schema 4.0 XSD" ; dcterms:description "XML Schema (XSD) for version 4.0 of the re3data Metadata Schema for the Description of Research Data Repositories, released in 2023." ; schema1:url . kgr:re3data.schema-docs a schema1:DocumentationProduct ; rdfs:label "re3data Metadata Schema 4.0 Documentation" ; dcterms:description "Documentation of version 4.0 of the re3data Metadata Schema for the Description of Research Data Repositories, describing each property and its controlled vocabularies (DOI 10.48440/re3.014)." ; schema1:url . kgr:reacto.go-lego-reacto.owl a schema1:OntologyProduct ; rdfs:label "GO LEGO REACTO Integrated Ontology" ; dcterms:description "Integrated GO-LEGO-REACTO ontology for logical inference workflows." ; schema1:url . kgr:reacto.owl a schema1:OntologyProduct ; rdfs:label "REACTO OWL Ontology" ; dcterms:description "Primary REACTO ontology file representing Reactome entities in OWL." ; schema1:url . kgr:reactome.api a schema1:ProgrammingInterface ; rdfs:label "Reactome REST API" ; dcterms:description "RESTful web service API for programmatic access to Reactome pathway data and content, supporting JSON responses for web applications and tools" ; schema1:url . kgr:reactome.api.docs a schema1:DocumentationProduct ; rdfs:label "Reactome Content Service Documentation" ; dcterms:description "Developer guide for the Reactome Content Service, including API usage, examples, and links to the interactive endpoint documentation." ; schema1:url . kgr:reactome.biopax a schema1:GraphProduct ; rdfs:label "Reactome BioPAX Format" ; dcterms:description "Complete Reactome pathway data in BioPAX (Biological Pathway Exchange) format, the standard RDF/OWL-based language for representing biological pathways at molecular and cellular levels" ; schema1:url . kgr:reactome.browser a schema1:GraphicalInterface ; rdfs:label "Reactome Pathway Browser" ; dcterms:description "Interactive pathway browser providing visual exploration of human biological pathways, reactions, and molecular interactions with integrated visualization tools" ; schema1:url . kgr:reactome.data.human a schema1:Product ; rdfs:label "Reactome Human from BioPAX, sqlite" ; dcterms:description "Conversion from BioPAX, human subset" ; schema1:url . kgr:reactome.flat a schema1:GraphProduct ; rdfs:label "Reactome Pathway Hierarchy Flat File" ; dcterms:description "Pathway hierarchy relationships in flat text format" ; schema1:url . kgr:reactome.graphdb.archive a schema1:GraphProduct ; rdfs:label "Reactome Graph Database Archive" ; dcterms:description "Reactome graph database archive package for local graph database deployment" ; schema1:url . kgr:reactome.mysql.main a schema1:Product ; rdfs:label "Reactome Main MySQL Dump" ; dcterms:description "Main MySQL database dump for the current Reactome release" ; schema1:url . kgr:reactome.mysql.stable_ids a schema1:Product ; rdfs:label "Reactome Stable IDs MySQL Dump" ; dcterms:description "Stable identifiers MySQL database dump for the current Reactome release" ; schema1:url . kgr:reactome.neo4j a schema1:GraphProduct ; rdfs:label "Reactome Neo4j Graph Database" ; dcterms:description "Complete Reactome pathway database in native Neo4j graph database format, supporting interactive exploration and complex relationship queries" ; schema1:url . kgr:reactome.pathways.txt a schema1:Product ; rdfs:label "Reactome Pathway List" ; dcterms:description "Complete list of Reactome pathways in flat text format" ; schema1:url . kgr:reactome.rdf a schema1:GraphProduct ; rdfs:label "Reactome RDF/XML Format" ; dcterms:description "Reactome data in RDF/XML format for semantic web integration and knowledge graph applications" ; schema1:url . kgr:reactome.sbml a schema1:GraphProduct ; rdfs:label "Reactome SBML Format" ; dcterms:description "Reactome pathway data in SBML (Systems Biology Markup Language) format for computational modeling and systems biology applications, including kinetic information" ; schema1:url . kgr:reconx.model a schema1:DataModelProduct ; rdfs:label "Recon Human Metabolic Reconstruction" ; dcterms:description "Genome-scale human metabolic reconstruction model (Recon) distributed as a constraint-based model, available in SBML and related systems biology formats." ; schema1:url . kgr:reconx.vmh a schema1:GraphicalInterface ; rdfs:label "Virtual Metabolic Human Portal" ; dcterms:description "Virtual Metabolic Human web portal for browsing and querying the Recon human metabolic reconstruction, including reactions, metabolites, genes, and associated microbiota and nutrition data." ; schema1:url . kgr:rediportal.portal a schema1:GraphicalInterface ; rdfs:label "REDIportal Web Portal" ; dcterms:description "Web interface for browsing A-to-I RNA editing sites; supports Search Positions, Search Sample (GTEx/TCGA), Search dsRNA, and Gene View with integrated links to Ensembl, RNAcentral, UniProt, and PRIDE." ; schema1:url . kgr:redu.docs a schema1:DocumentationProduct ; rdfs:label "ReDU Documentation" ; dcterms:description "ReDU documentation describing the ReDU file selector, sample information metadata, GNPS repository-scale molecular networking, chemical explorer, contribution process, and data/code availability." ; schema1:url . kgr:regl.docs a schema1:DocumentationProduct ; rdfs:label "REGL Documentation" ; dcterms:description "Translator wiki documentation page for the Richards Effector Gene List." ; schema1:url . kgr:reliefweb.api a schema1:ProgrammingInterface ; rdfs:label "ReliefWeb API" ; dcterms:description "The ReliefWeb API, a public REST interface exposing all ReliefWeb content (reports, disasters, jobs, training, and reference data) as JSON, with full-text search and faceted filtering. Requires a registered appname; limited to 1,000 entries per call and 1,000 calls per day at no cost." ; schema1:url . kgr:reliefweb.site a schema1:GraphicalInterface ; rdfs:label "ReliefWeb Website" ; dcterms:description "The ReliefWeb website, providing browsable and searchable access to humanitarian situation reports, disaster updates, maps, infographics, jobs, and training announcements." ; schema1:url . kgr:remap.api a schema1:ProgrammingInterface ; rdfs:label "ReMap REST API" ; dcterms:description "ReMap REST interface for programmatic access to search, annotation, and regulatory region endpoints." ; schema1:url . kgr:remap.downloads a schema1:Product ; rdfs:label "ReMap Downloads" ; dcterms:description "ReMap download page for binding region catalogs, track hubs, and associated release files." ; schema1:url . kgr:remap.portal a schema1:GraphicalInterface ; rdfs:label "ReMap Portal" ; dcterms:description "Main ReMap portal for searching transcriptional regulators, tissues, and DNA-binding datasets." ; schema1:url . kgr:renci a "Organization" ; rdfs:label "RENCI (Renaissance Computing Institute)" . kgr:repodb.web_interface a schema1:GraphicalInterface ; rdfs:label "RepoDB Web Interface" ; dcterms:description "Interactive web interface for exploring RepoDB data with drug-centric and disease-centric search capabilities" ; schema1:url . kgr:repohub.about a schema1:DocumentationProduct ; rdfs:label "About the Repurposing Hub" ; dcterms:description "About page with detailed information on the Drug Repurposing Hub history, team, and usage" ; schema1:url . kgr:repohub.case-studies a schema1:DocumentationProduct ; rdfs:label "Case Studies" ; dcterms:description "Case studies demonstrating applications of the Drug Repurposing Hub" ; schema1:url . kgr:repohub.data-portal a schema1:GraphicalInterface ; rdfs:label "Data Portal" ; dcterms:description "Interactive data portal for searching and exploring compound annotations, targets, mechanisms, and indications" ; schema1:url . kgr:repohub.drug-info a schema1:Product ; rdfs:label "Drug Information Download" ; dcterms:description "Downloadable drug information file with compound metadata including names, structures, targets, mechanisms, and indications" ; schema1:url . kgr:repohub.drug-info.tsv a schema1:Product ; rdfs:label "Drug Repurposing Hub Drug Information TSV" ; dcterms:description "Latest drug-level annotations including compound names, clinical phase, mechanism of action, and protein targets (listed as version 2025-08-19 on the site)." ; schema1:url . kgr:repohub.followup-compounds a schema1:Product ; rdfs:label "Follow-up Compound Collection" ; dcterms:description "Follow-up compound collection of approximately 2,400 compounds available for secondary studies" ; schema1:url . kgr:repohub.intake-policy a schema1:DocumentationProduct ; rdfs:label "Compound Intake Policy" ; dcterms:description "Policy document for compound intake and donation to the collection" ; schema1:url . kgr:repohub.portal a schema1:GraphicalInterface ; rdfs:label "Repurposing Hub Portal" ; dcterms:description "Web portal for exploring the Drug Repurposing Hub compound collection and annotations" ; schema1:url . kgr:repohub.repo1-library a schema1:Product ; rdfs:label "REPO1 Dilution Series Library" ; dcterms:description "REPO1 subset library available in 5-point, 10-fold dilution series as single-use assay-ready plates" ; schema1:url . kgr:repohub.sample-info a schema1:Product ; rdfs:label "Sample Information Download" ; dcterms:description "Downloadable sample information file with compound library details and annotations" ; schema1:url . kgr:repohub.screening-info a schema1:DocumentationProduct ; rdfs:label "Screening Information" ; dcterms:description "Information about conducting screens with the Drug Repurposing Hub library" ; schema1:url . kgr:repohub.screening-library a schema1:Product ; rdfs:label "Screening Library" ; dcterms:description "Physical screening library of 5,506 compounds (90% FDA-approved or in clinical trials) available as assay-ready plates" ; schema1:url . kgr:reprotox-kg.code a schema1:ProcessProduct ; rdfs:label "ReproTox-KG Source Repository" ; dcterms:description "Source repository for the ReproTox-KG website assets, schema, and ingestion notebooks." ; schema1:url . kgr:reprotox-kg.schema a schema1:Product ; rdfs:label "ReproTox-KG Schema" ; dcterms:description "Knowledge graph schema definition used by ReproTox-KG." ; schema1:url . kgr:resid.owl a schema1:OntologyProduct ; rdfs:label "Protein covalent bond OWL edition" ; dcterms:description "Canonical OWL edition of the RESID protein covalent bond ontology distributed via OBO PURL." ; schema1:url . kgr:retriever.code a schema1:ProcessProduct ; rdfs:label "Retriever Source Repository" ; dcterms:description "Retriever source code implementing query deduplication, caching, and TRAPI aggregation workflows." ; schema1:url . kgr:retriever.docs a schema1:DocumentationProduct ; rdfs:label "Retriever Documentation" ; dcterms:description "Project README with deployment and usage instructions for Retriever." ; schema1:url . kgr:rex.kg-bioportal a schema1:GraphProduct ; rdfs:label "REX KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Physico-Chemical Process (REX), produced by KG-Bioportal from the BioPortal submission. The archive contains REX_nodes.tsv and REX_edges.tsv." ; schema1:url . kgr:rex.owl a schema1:OntologyProduct ; rdfs:label "rex.owl" ; dcterms:description "Physico-chemical process in OWL format" ; schema1:url . kgr:rfam.api a schema1:ProgrammingInterface ; rdfs:label "Rfam REST API" ; dcterms:description "REST API for programmatic access to Rfam data" ; schema1:url . kgr:rfam.cm-models a schema1:Product ; rdfs:label "Rfam Covariance Models" ; dcterms:description "Covariance models for all RNA families in CM format" ; schema1:url . kgr:rfam.docs a schema1:DocumentationProduct ; rdfs:label "Rfam Documentation" ; dcterms:description "Comprehensive documentation for Rfam database and tools" ; schema1:url . kgr:rfam.fasta a schema1:Product ; rdfs:label "Rfam FASTA Sequences" ; dcterms:description "FASTA format sequences for all RNA families" ; schema1:url . kgr:rfam.ftp a schema1:Product ; rdfs:label "Rfam FTP Archive" ; dcterms:description "FTP archive with covariance models, sequence alignments, and database files" ; schema1:url . kgr:rfam.full-alignments a schema1:Product ; rdfs:label "Rfam FULL Alignments" ; dcterms:description "FULL alignments for all RNA families" ; schema1:url . kgr:rfam.pdb-mappings a schema1:MappingProduct ; rdfs:label "Rfam PDB Mappings" ; dcterms:description "PDB structure mappings showing RNA families with 3D structures" ; schema1:url . kgr:rfam.portal a schema1:GraphicalInterface ; rdfs:label "Rfam Web Portal" ; dcterms:description "Web portal for searching and browsing RNA families" ; schema1:url . kgr:rfam.public-db a schema1:DataModelProduct ; rdfs:label "Rfam Public MySQL Database" ; dcterms:description "Public MySQL database for direct SQL access to Rfam data" ; schema1:url . kgr:rfam.seed-alignments a schema1:Product ; rdfs:label "Rfam SEED Alignments" ; dcterms:description "SEED alignments for all RNA families in Stockholm format" ; schema1:url . kgr:ribocentre.portal a schema1:GraphicalInterface ; rdfs:label "Ribocentre Web Portal" ; dcterms:description "Web portal for searching and browsing ribozyme data including sequences, structures, catalytic information, and publications" ; schema1:url . kgr:ribocentre.publications a schema1:DocumentationProduct ; rdfs:label "Publications Database" ; dcterms:description "Comprehensive publication database with 293+ entries of ribozyme research articles" ; schema1:url . kgr:ribocentre.ribozymes a schema1:GraphicalInterface ; rdfs:label "Ribozyme Browser" ; dcterms:description "Browse comprehensive information about different ribozyme types with timelines, structures, and mechanisms" ; schema1:url . kgr:ribocentre.structures a schema1:GraphicalInterface ; rdfs:label "Structure Visualization" ; dcterms:description "Interactive 2D and 3D structure visualization tools for ribozymes" ; schema1:url . kgr:ribovision.2d-maps a schema1:Product ; rdfs:label "2D Structure Maps" ; dcterms:description "Pre-generated 2D layouts of ribosomal RNAs exported from PDBe API" ; schema1:url . kgr:ribovision.2d-viewer a schema1:GraphicalInterface ; rdfs:label "2D RNA Topology Viewer" ; dcterms:description "2D RNA topology viewer for visualizing ribosomal RNA secondary structures" ; schema1:url . kgr:ribovision.3d-structures a schema1:Product ; rdfs:label "3D Structure Data" ; dcterms:description "3D ribosome structures fetched from RCSB PDB with coordinate data" ; schema1:url . kgr:ribovision.3d-viewer a schema1:GraphicalInterface ; rdfs:label "3D Structure Viewer" ; dcterms:description "MolStar-based 3D structure viewer for interactive exploration of ribosome structures" ; schema1:url . kgr:ribovision.about a schema1:DocumentationProduct ; rdfs:label "About RiboVision" ; dcterms:description "About page with introduction to RiboVision 2 and contributors" ; schema1:url . kgr:ribovision.advanced-features a schema1:DocumentationProduct ; rdfs:label "Advanced Features Guide" ; dcterms:description "Documentation for advanced features and analysis capabilities" ; schema1:url . kgr:ribovision.alignments a schema1:Product ; rdfs:label "rRNA Alignments" ; dcterms:description "Multiple sequence alignments for ribosomal RNAs generated according to DESIRE methodology" ; schema1:url . kgr:ribovision.basic-navigation a schema1:DocumentationProduct ; rdfs:label "Basic Navigation Guide" ; dcterms:description "Documentation for basic navigation and interface usage" ; schema1:url . kgr:ribovision.chemical-modifications a schema1:Product ; rdfs:label "Chemical Modifications" ; dcterms:description "Chemical modification data extracted from PDB CIF files" ; schema1:url . kgr:ribovision.data-documentation a schema1:DocumentationProduct ; rdfs:label "Data Documentation" ; dcterms:description "Detailed documentation about RiboVision data sources and computational methods" ; schema1:url . kgr:ribovision.examples a schema1:DocumentationProduct ; rdfs:label "Examples Gallery" ; dcterms:description "Gallery of examples demonstrating RiboVision capabilities" ; schema1:url . kgr:ribovision.expansion-segments a schema1:Product ; rdfs:label "Expansion Segment Annotations" ; dcterms:description "Expansion segment annotations from evolutionary accretion model" ; schema1:url . kgr:ribovision.helices a schema1:Product ; rdfs:label "Helix Annotations" ; dcterms:description "Helix definitions and annotations for ribosomal RNA structures" ; schema1:url . kgr:ribovision.msa-viewer a schema1:GraphicalInterface ; rdfs:label "Alignment Viewer" ; dcterms:description "MSA viewer for exploring multiple sequence alignments of ribosomal RNA" ; schema1:url . kgr:ribovision.nucleotide-frequencies a schema1:Product ; rdfs:label "Nucleotide Frequencies" ; dcterms:description "Nucleotide frequency data from MSA columns with gap-adjusted probabilities" ; schema1:url . kgr:ribovision.phylogeny-browser a schema1:GraphicalInterface ; rdfs:label "Phylogenetic Browser" ; dcterms:description "Interactive phylogenetic browser for exploring ribosomal RNA sequences across 152 species" ; schema1:url . kgr:ribovision.portal a schema1:GraphicalInterface ; rdfs:label "RiboVision 2.0 Portal" ; dcterms:description "Main web portal for RiboVision 2.0 with advanced visualization of RNA molecules" ; schema1:url . kgr:ribovision.protein-contacts a schema1:Product ; rdfs:label "RNA-Protein Contacts" ; dcterms:description "RNA-protein contact data computed using BioPython NeighborSearch with 3.5Å cutoff" ; schema1:url . kgr:ribovision.sequences a schema1:Product ; rdfs:label "rRNA Sequence Database" ; dcterms:description "Database of 152 ribosomal RNA sequences from the DESIRE dataset organized by phylogeny" ; schema1:url . kgr:ribovision.shannon-entropy a schema1:Product ; rdfs:label "Shannon Entropy Data" ; dcterms:description "Shannon entropy calculations for sequence conservation analysis" ; schema1:url . kgr:ribovision.twincons a schema1:Product ; rdfs:label "TwinCons Comparison Data" ; dcterms:description "TwinCons scores for two-group phylogenetic comparisons" ; schema1:url . kgr:ribovision.user-upload-guide a schema1:DocumentationProduct ; rdfs:label "User Upload Mode Guide" ; dcterms:description "User guide for upload mode with custom structures and alignments" ; schema1:url . kgr:rlims-p.annotation-guidelines a schema1:DocumentationProduct ; rdfs:label "RLIMS-P Annotation Guidelines" ; dcterms:description "Annotation guidelines used with RLIMS-P protein phosphorylation literature-mining tasks." ; schema1:url . kgr:rnadisease.web a schema1:Product ; rdfs:label "RNADisease Web Resource" ; dcterms:description "RNADisease website for browsing RNA-disease association records." ; schema1:url . kgr:rnainter.web a schema1:Product ; rdfs:label "RNAInter Web Resource" ; dcterms:description "RNAInter website for exploring RNA interaction data." ; schema1:url . kgr:rnao.kg-bioportal a schema1:GraphProduct ; rdfs:label "RNAO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of RNA Ontology (RNAO), produced by KG-Bioportal from the BioPortal submission. The archive contains RNAO_nodes.tsv and RNAO_edges.tsv." ; schema1:url . kgr:rnao.obo a schema1:OntologyProduct ; rdfs:label "rnao.obo" ; dcterms:description "RNA ontology in OBO format" ; schema1:url . kgr:rnao.owl a schema1:OntologyProduct ; rdfs:label "rnao.owl" ; dcterms:description "RNA ontology in OWL format" ; schema1:url . kgr:ro.core.owl a schema1:OntologyProduct ; rdfs:label "RO Core relations" ; dcterms:description "Minimal subset intended to work with BFO-classes" ; schema1:url . kgr:ro.json a schema1:OntologyProduct ; rdfs:label "Relation Ontology in obojson format" ; dcterms:description "Relation Ontology in obojson format" ; schema1:url . kgr:ro.kg-bioportal a schema1:GraphProduct ; rdfs:label "OBOREL KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Relations Ontology (OBOREL), produced by KG-Bioportal from the BioPortal submission. The archive contains OBOREL_nodes.tsv and OBOREL_edges.tsv." ; schema1:url . kgr:ro.obo a schema1:OntologyProduct ; rdfs:label "Relation Ontology in obo format" ; dcterms:description "The obo edition is less expressive than the OWL, and has imports merged in" ; schema1:url . kgr:ro.owl a schema1:OntologyProduct ; rdfs:label "Relation Ontology" ; dcterms:description "Canonical edition" ; schema1:url . kgr:ro.ro-base.owl a schema1:OntologyProduct ; rdfs:label "RO base ontology" ; dcterms:description "Axioms defined within RO and to be used in imports for other ontologies" ; schema1:url . kgr:ro.subsets.ro-interaction.owl a schema1:OntologyProduct ; rdfs:label "Interaction relations" ; dcterms:description "For use in ecology and environmental science" ; schema1:url . kgr:ro.subsets.ro-neuro.owl a schema1:OntologyProduct ; rdfs:label "Neuroscience subset" ; dcterms:description "For use in neuroscience" ; schema1:url . kgr:robokop.graph a schema1:Product ; rdfs:label "ROBOKOP Knowledge Graph (KG)" ; dcterms:description "A biomedical knowledge graph containing ~10 million nodes and ~250 million edges from ~30 biological data sources and bio-ontologies." ; schema1:url . kgr:ror.api a schema1:ProgrammingInterface ; rdfs:label "ROR REST API Documentation" ; dcterms:description "REST API for searching and retrieving ROR organization records." ; schema1:url . kgr:ror.data-dump a schema1:Product ; rdfs:label "ROR Data Dump" ; dcterms:description "Monthly ROR registry data dump available in JSON and CSV formats." ; schema1:url . kgr:rs.kg-bioportal a schema1:GraphProduct ; rdfs:label "RS KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Rat Strain Ontology (RS), produced by KG-Bioportal from the BioPortal submission. The archive contains RS_nodes.tsv and RS_edges.tsv." ; schema1:url . kgr:rs.obo a schema1:OntologyProduct ; rdfs:label "rs.obo" ; dcterms:description "Rat Strain Ontology in OBO format" ; schema1:url . kgr:rs.owl a schema1:OntologyProduct ; rdfs:label "rs.owl" ; dcterms:description "Rat Strain Ontology in OWL format" ; schema1:url . kgr:rtx-kg2.code a schema1:ProcessProduct ; rdfs:label "Code for building RTX-KG2" ; dcterms:description "Code for building RTX-KG2, in Python" ; schema1:url . kgr:rubygems.website a schema1:GraphicalInterface ; rdfs:label "RubyGems.org website" ; dcterms:description "Web interface and public registry for browsing and retrieving Ruby gems" ; schema1:url . kgr:rural-urban-continuum-codes.ers-page a schema1:GraphicalInterface ; rdfs:label "USDA ERS Rural-Urban Continuum Codes data page" ; dcterms:description "USDA ERS Rural-Urban Continuum Codes data product page, providing documentation, methodology, and downloadable county-level RUCC datasets." ; schema1:url . kgr:ruralkg.sparql a schema1:ProgrammingInterface ; rdfs:label "Rural Resilience KG SPARQL" ; dcterms:description "SPARQL endpoint for Rural Resilience KG" ; schema1:url . kgr:ruralkg.tpf a schema1:ProgrammingInterface ; rdfs:label "Rural Resilience KG TPF" ; dcterms:description "Triple Pattern Fragments endpoint for Rural Resilience KG" ; schema1:url . kgr:rxno.kg-bioportal a schema1:GraphProduct ; rdfs:label "RXNO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Name Reaction Ontology (RXNO), produced by KG-Bioportal from the BioPortal submission. The archive contains RXNO_nodes.tsv and RXNO_edges.tsv." ; schema1:url . kgr:rxno.owl a schema1:OntologyProduct ; rdfs:label "Name Reaction Ontology" ; dcterms:description "Name Reaction Ontology" ; schema1:url . kgr:rxnorm.api a schema1:ProgrammingInterface ; rdfs:label "RxNorm API" ; dcterms:description "RESTful web services providing programmatic access to RxNorm drug terminology data including drug names, identifiers, relationships, and properties" ; schema1:url . kgr:rxnorm.data_files a schema1:Product ; rdfs:label "RxNorm Data Files" ; dcterms:description "Monthly releases of RxNorm data files in multiple formats including RRF files for the full vocabulary and relationships" ; schema1:url . kgr:rxnorm.rxclass a schema1:GraphicalInterface ; rdfs:label "RxClass" ; dcterms:description "Tool for exploring drug class hierarchies and finding RxNorm drug members associated with each class from multiple classification systems" ; schema1:url . kgr:rxnorm.rxmix a schema1:ProgrammingInterface ; rdfs:label "RxMix" ; dcterms:description "Interactive tool allowing users to combine multiple API functions to build custom drug information applications" ; schema1:url . kgr:rxnorm.rxnav a schema1:GraphicalInterface ; rdfs:label "RxNav Browser" ; dcterms:description "Interactive web browser for searching and exploring RxNorm drug concepts, relationships, and properties with multiple viewing options" ; schema1:url . kgr:rxnorm.rxnav_in_a_box a schema1:Product ; rdfs:label "RxNav-in-a-Box" ; dcterms:description "Locally installable package containing RxNav, RxClass, RxMix tools and RESTful APIs for offline use" ; schema1:url . kgr:saezlab a "Organization" ; rdfs:label "Saez-Rodriguez Lab" . kgr:sao.kg-bioportal a schema1:GraphProduct ; rdfs:label "SAO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Subcellular Anatomy Ontology (SAO), produced by KG-Bioportal from the BioPortal submission. The archive contains SAO_nodes.tsv and SAO_edges.tsv." ; schema1:url . kgr:sao.owl a schema1:OntologyProduct ; rdfs:label "Subcellular anatomy ontology OWL edition" ; dcterms:description "Canonical OWL edition of the Subcellular Anatomy Ontology distributed via OBO PURL." ; schema1:url . kgr:sawgraph.sparql a schema1:ProgrammingInterface ; rdfs:label "SAWGraph PFAS KG SPARQL" ; dcterms:description "SPARQL endpoint for SAWGraph PFAS KG" ; schema1:url . kgr:sawgraph.tpf a schema1:ProgrammingInterface ; rdfs:label "SAWGraph PFAS KG TPF" ; dcterms:description "Triple Pattern Fragments endpoint for SAWGraph PFAS KG" ; schema1:url . kgr:sbo.kg-bioportal a schema1:GraphProduct ; rdfs:label "SBO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Systems Biology Ontology (SBO), produced by KG-Bioportal from the BioPortal submission. The archive contains SBO_nodes.tsv and SBO_edges.tsv." ; schema1:url . kgr:sbo.owl a schema1:OntologyProduct ; rdfs:label "sbo.owl" ; dcterms:description "Systems Biology Ontology in OWL format" ; schema1:url . kgr:scales.sparql a schema1:ProgrammingInterface ; rdfs:label "SCALES SPARQL" ; dcterms:description "SPARQL endpoint for SCALES" ; schema1:url . kgr:scales.tpf a schema1:ProgrammingInterface ; rdfs:label "SCALES TPF" ; dcterms:description "Triple Pattern Fragments endpoint for SCALES" ; schema1:url . kgr:scdo.kg-bioportal a schema1:GraphProduct ; rdfs:label "SCDO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Sickle Cell Disease Ontology (SCDO), produced by KG-Bioportal from the BioPortal submission. The archive contains SCDO_nodes.tsv and SCDO_edges.tsv." ; schema1:url . kgr:scdo.obo a schema1:OntologyProduct ; rdfs:label "scdo.obo" ; dcterms:description "Sickle Cell Disease Ontology in OBO format" ; schema1:url . kgr:scdo.owl a schema1:OntologyProduct ; rdfs:label "scdo.owl" ; dcterms:description "Sickle Cell Disease Ontology in OWL format" ; schema1:url . kgr:sckan.apinatomy a schema1:Product ; rdfs:label "SCKAN ApiNATOMY Models" ; dcterms:description "Detailed ApiNATOMY models of neural circuits for organs including bladder, heart, colon, stomach, spleen, pancreas, and airways. Models are available in open-physiology repositories." ; schema1:url . kgr:sckan.data_release a schema1:Product ; rdfs:label "SCKAN Data Release" ; dcterms:description "Latest SCKAN data release, including curated knowledge and models, available via Zenodo." ; schema1:url . kgr:sckan.docs a schema1:DocumentationProduct ; rdfs:label "SCKAN Documentation and Tutorials" ; dcterms:description "Documentation, setup instructions, tutorials, and example queries for using and exploring SCKAN." ; schema1:url . kgr:sckan.query_interface a schema1:GraphicalInterface ; rdfs:label "SCKAN Query Interface (Docker)" ; dcterms:description "Interactive computational notebook (Org mode) for querying SCKAN via SPARQL and Cypher, supporting parameterized queries, code blocks, and graphical results. Distributed as a Docker image." ; schema1:url . kgr:scop.site a schema1:GraphicalInterface ; rdfs:label "SCOP Website" ; dcterms:description "Web interface for browsing and searching the structural classification of protein domains." ; schema1:url . kgr:scott-lab-universite-de-sherbrooke a "Organization" ; rdfs:label "Scott Lab, Department of Biochemistry and Functional Genomics, Université de Sherbrooke" . kgr:securechainkg.sparql a schema1:ProgrammingInterface ; rdfs:label "SecureChain KG SPARQL" ; dcterms:description "SPARQL endpoint for SecureChain KG" ; schema1:url . kgr:securechainkg.tpf a schema1:ProgrammingInterface ; rdfs:label "SecureChain KG TPF" ; dcterms:description "Triple Pattern Fragments endpoint for SecureChain KG" ; schema1:url . kgr:semantic-scholar.api a schema1:ProgrammingInterface ; rdfs:label "Semantic Scholar Academic Graph API" ; dcterms:description "Public API providing programmatic access to the Semantic Scholar Academic Graph (S2AG), including paper, author, and citation records." ; schema1:url . kgr:semantic-scholar.website a schema1:GraphicalInterface ; rdfs:label "Semantic Scholar Search" ; dcterms:description "Web interface for searching and browsing the Semantic Scholar corpus of papers, authors, and citations." ; schema1:url . kgr:semmeddb.semrep.tool a schema1:ProcessProduct ; rdfs:label "SemRep NLP System" ; dcterms:description "The SemRep natural language processing system that extracts semantic predications from biomedical literature to create SemMedDB" ; schema1:url . kgr:semopenalex.sparql a schema1:ProgrammingInterface ; rdfs:label "SemOpenAlex SPARQL" ; dcterms:description "SPARQL endpoint for SemOpenAlex" ; schema1:url . kgr:semopenalex.tpf a schema1:ProgrammingInterface ; rdfs:label "SemOpenAlex TPF" ; dcterms:description "Triple Pattern Fragments endpoint for SemOpenAlex" ; schema1:url . kgr:semrep.homepage a schema1:GraphicalInterface ; rdfs:label "SemRep / SemMedDB SKR Tools Page" ; dcterms:description "SemRep and SemMedDB tool homepage and documentation hub hosted by the NLM Lister Hill National Center for Biomedical Communications, with access to the Semantic Knowledge Representation (SKR) tools, distributions, and documentation." ; schema1:url . kgr:sennet.api a schema1:ProgrammingInterface ; rdfs:label "SenNet API" ; dcterms:description "API for programmatic access to SenNet data" ; schema1:url . kgr:sennet.data a schema1:Product ; rdfs:label "SenNet Multi-Omics Data" ; dcterms:description "Multi-omics datasets of senescent cells" ; schema1:url . kgr:sennet.portal a schema1:GraphicalInterface ; rdfs:label "SenNet Data Portal" ; dcterms:description "Data portal for browsing and accessing SenNet datasets" ; schema1:url . kgr:sep.owl a schema1:OntologyProduct ; rdfs:label "sep.owl" ; dcterms:description "Sample processing and separation techniques in OWL format" ; schema1:url . kgr:sepio.kg-bioportal a schema1:GraphProduct ; rdfs:label "SEPIO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Scientific Evidence and Provenance Information Ontology (SEPIO), produced by KG-Bioportal from the BioPortal submission. The archive contains SEPIO_nodes.tsv and SEPIO_edges.tsv." ; schema1:url . kgr:sepio.owl a schema1:OntologyProduct ; rdfs:label "SEPIO" ; dcterms:description "SEPIO" ; schema1:url . kgr:sequence-ontology a "Organization" ; rdfs:label "Sequence Ontology Consortium" . kgr:service-kp.docs a schema1:DocumentationProduct ; rdfs:label "Service KP Documentation" ; dcterms:description "Team documentation for the Translator Service Provider." ; schema1:url . kgr:sfld.site a schema1:GraphicalInterface ; rdfs:label "SFLD Website" ; dcterms:description "Web interface for browsing enzyme superfamilies and their sequence, structure, and function relationships." ; schema1:url . kgr:shepherd.code a schema1:ProcessProduct ; rdfs:label "Shepherd Source Repository" ; dcterms:description "Shepherd source code, with the server, broker, response store and the workers for each ARA operation, deployed as Docker containers." ; schema1:url . kgr:shepherd.docs a schema1:DocumentationProduct ; rdfs:label "Shepherd Documentation" ; dcterms:description "Project README describing Shepherd's TRAPI handling, local development with Docker Compose and the data downloads its workers need." ; schema1:url . kgr:sibils.api.rest.fetch a schema1:ProgrammingInterface ; rdfs:label "SIBiLS Fetch API" ; dcterms:description "RESTful API for fetching annotated contents from SIBiLS collections" ; schema1:url . kgr:sibils.api.rest.qa a schema1:ProgrammingInterface ; rdfs:label "SIBiLS Question Answering API" ; dcterms:description "RESTful API for question answering using natural language in SIBiLS collections" ; schema1:url . kgr:sibils.api.rest.search a schema1:ProgrammingInterface ; rdfs:label "SIBiLS Search API" ; dcterms:description "RESTful API for customizable search in SIBiLS collections" ; schema1:url . kgr:sibils.api.sparql a schema1:ProgrammingInterface ; rdfs:label "SIBiLS SPARQL Endpoint" ; dcterms:description "SPARQL endpoint for querying SIBiLS data" ; schema1:url . kgr:sibils.site a schema1:GraphicalInterface ; rdfs:label "SIBiLS Web Interface" ; dcterms:description "Web interface for exploring SIBiLS data" ; schema1:url . kgr:sibo.kg-bioportal a schema1:GraphProduct ; rdfs:label "SIBO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Social Insect Behavior Ontology (SIBO), produced by KG-Bioportal from the BioPortal submission. The archive contains SIBO_nodes.tsv and SIBO_edges.tsv." ; schema1:url . kgr:sibo.obo a schema1:OntologyProduct ; rdfs:label "sibo.obo" ; dcterms:description "Social Insect Behavior Ontology in OBO format" ; schema1:url . kgr:sibo.owl a schema1:OntologyProduct ; rdfs:label "sibo.owl" ; dcterms:description "Social Insect Behavior Ontology in OWL format" ; schema1:url . kgr:sic.manual a schema1:GraphicalInterface ; rdfs:label "OSHA SIC Manual" ; dcterms:description "The OSHA SIC Manual, a searchable reference for the Standard Industrial Classification system describing industry divisions, major groups, and four-digit SIC codes." ; schema1:url . kgr:sider.drug_atc a schema1:MappingProduct ; rdfs:label "SIDER Drug ATC Codes" ; dcterms:description "Tab-separated file mapping drugs to their ATC codes." ; schema1:url . kgr:sider.drug_names a schema1:Product ; rdfs:label "SIDER Drug Names" ; dcterms:description "Tab-separated file mapping drugs to their names and synonyms." ; schema1:url . kgr:sider.meddra a schema1:Product ; rdfs:label "SIDER MedDRA Dictionary" ; dcterms:description "Tab-separated file mapping MedDRA terms to their concept ID." ; schema1:url . kgr:sider.meddra_all_indications a schema1:Product ; rdfs:label "SIDER MedDRA All Indications" ; dcterms:description "Tab-separated file containing all drug indications extracted from drug labels using MedDRA terminology." ; schema1:url . kgr:sider.meddra_all_label_indications a schema1:Product ; rdfs:label "SIDER MedDRA All Label Indications" ; dcterms:description "Tab-separated file containing all original label indications extracted from drug labels using MedDRA terminology." ; schema1:url . kgr:sider.meddra_all_label_se a schema1:Product ; rdfs:label "SIDER MedDRA All Label Side Effects" ; dcterms:description "Tab-separated file containing all original label side effects extracted from drug labels using MedDRA terminology." ; schema1:url . kgr:sider.meddra_all_se a schema1:Product ; rdfs:label "SIDER MedDRA All Side Effects" ; dcterms:description "Tab-separated file containing all side effects extracted from drug labels using MedDRA terminology." ; schema1:url . kgr:sider.meddra_freq a schema1:Product ; rdfs:label "SIDER MedDRA Frequency" ; dcterms:description "Tab-separated file containing side effect frequency information extracted from drug labels using MedDRA terminology." ; schema1:url . kgr:sider.web a schema1:GraphicalInterface ; rdfs:label "SIDER Web Interface" ; dcterms:description "Web interface that allows searching and browsing drugs and their side effects." ; schema1:url . kgr:sifr-bioportal.api.docs a schema1:DocumentationProduct ; rdfs:label "SIFR BioPortal REST API Documentation" ; dcterms:description "Documentation of the SIFR BioPortal REST API, listing resources, parameters, and response formats." ; schema1:url . kgr:sifr-bioportal.sparql a schema1:ProgrammingInterface ; rdfs:label "SIFR BioPortal SPARQL Endpoint" ; dcterms:description "SPARQL endpoint over the ontology content stored in SIFR BioPortal, with a test query form." ; schema1:url . kgr:signor.api a schema1:ProgrammingInterface ; rdfs:label "SIGNOR REST API" ; dcterms:description "REST-style endpoints for retrieving interaction, pathway, complex, and organism-specific datasets (tab-separated)" ; schema1:url . kgr:signor.complete a schema1:GraphProduct ; rdfs:label "SIGNOR Latest Stable Release" ; dcterms:description "Latest stable SIGNOR complete dataset (signed, directed causal interactions with effects, mechanisms, PMIDs, scores)" ; schema1:url . kgr:signor.interactions.dynamic a schema1:ProgrammingInterface ; rdfs:label "SIGNOR Interaction Query Endpoint" ; dcterms:description "Programmatic interaction data query returning tab-separated causal interaction records for specified entity IDs with configurable depth and type" ; schema1:url . kgr:signor.pathways a schema1:ProgrammingInterface ; rdfs:label "SIGNOR Pathway Data" ; dcterms:description "Pathway data (entities and relations) retrievable via parameterized REST calls supporting per-pathway or global views" ; schema1:url . kgr:signor.web a schema1:GraphicalInterface ; rdfs:label "SIGNOR Website" ; dcterms:description "Web interface for browsing entities, pathways, and visualizing causal signaling graphs" ; schema1:url . kgr:silva.aligner a schema1:ProcessProduct ; rdfs:label "SILVA Alignment, Classification and Tree Service (ACT)" ; dcterms:description "SILVA Incremental Aligner (SINA) for accurate alignment of ribosomal RNA sequences against curated reference alignments" ; schema1:url . kgr:silva.arb_files a schema1:Product ; rdfs:label "SILVA ARB Files" ; dcterms:description "ARB-formatted database files for phylogenetic analysis and sequence management in the ARB software environment" ; schema1:url . kgr:silva.browser a schema1:GraphicalInterface ; rdfs:label "SILVA Browser" ; dcterms:description "Interactive browser for exploring SILVA taxonomic hierarchy and sequence data with phylogenetic context" ; schema1:url . kgr:silva.ngs_pipeline a schema1:ProcessProduct ; rdfs:label "SILVAngs" ; dcterms:description "SILVAngs pipeline for high-throughput analysis of ribosomal RNA gene amplicons from next-generation sequencing data" ; schema1:url . kgr:silva.release_files a schema1:Product ; rdfs:label "SILVA Release Files" ; dcterms:description "Comprehensive release files including FASTA sequences, alignments, taxonomies, and ARB database files for SSU and LSU rRNA" ; schema1:url . kgr:silva.search a schema1:GraphicalInterface ; rdfs:label "SILVA Search" ; dcterms:description "Web-based search interface for SILVA ribosomal RNA sequences with advanced filtering and taxonomic browsing capabilities" ; schema1:url . kgr:silva.testprime a schema1:ProcessProduct ; rdfs:label "SILVA TestPrime" ; dcterms:description "TestPrime tool for in silico evaluation of PCR primer coverage and specificity against SILVA sequences" ; schema1:url . kgr:silva.testprobe a schema1:ProcessProduct ; rdfs:label "SILVA TestProbe" ; dcterms:description "TestProbe tool for in silico evaluation of hybridization probe coverage and specificity against SILVA sequences" ; schema1:url . kgr:simap.portal a schema1:Product ; rdfs:label "SIMAP Portal" ; dcterms:description "Legacy SIMAP homepage used for sequence-similarity resource access." ; schema1:url . kgr:sio.bioportal a schema1:GraphicalInterface ; rdfs:label "SIO BioPortal Browser" ; dcterms:description "BioPortal browser page for the Semanticscience Integrated Ontology." ; schema1:url . kgr:sio.kg-bioportal a schema1:GraphProduct ; rdfs:label "SIO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Semanticscience Integrated Ontology (SIO), produced by KG-Bioportal from the BioPortal submission. The archive contains SIO_nodes.tsv and SIO_edges.tsv." ; schema1:url . kgr:sio.owl a schema1:OntologyProduct ; rdfs:label "SIO OWL" ; dcterms:description "OWL release of the Semanticscience Integrated Ontology." ; schema1:url . kgr:skm.ckn.explorer a schema1:GraphicalInterface ; rdfs:label "CKN Explorer" ; dcterms:description "Interactive search and visualization tool for the Comprehensive Knowledge Network" ; schema1:url . kgr:skm.pss.explorer a schema1:GraphicalInterface ; rdfs:label "PSS Explorer" ; dcterms:description "Interactive search and visualization tool for the mechanistic Plant Stress Signalling model" ; schema1:url . kgr:skos.core a schema1:DataModelProduct ; rdfs:label "SKOS Core" ; dcterms:description "SKOS Core Vocabulary Specification" ; schema1:url . kgr:skos.rdf a schema1:DataModelProduct ; rdfs:label "SKOS RDF/XML" ; dcterms:description "SKOS Namespace Document - RDF/XML Variant" ; schema1:url . kgr:skos.reference a schema1:DocumentationProduct ; rdfs:label "SKOS Reference" ; dcterms:description "SKOS Simple Knowledge Organization System Reference" ; schema1:url . kgr:sldb.code a schema1:ProcessProduct ; rdfs:label "SLDB Source Repository" ; dcterms:description "Source code for building the synthetic lethal interaction graph." ; schema1:url . kgr:sldb.docs a schema1:DocumentationProduct ; rdfs:label "SLDB Documentation" ; dcterms:description "Project README and documentation for SLDB graph generation and usage." ; schema1:url . kgr:sldb.releases a schema1:Product ; rdfs:label "SLDB Releases" ; dcterms:description "Release artifacts for SLDB graph builds." ; schema1:url . kgr:slso.kg-bioportal a schema1:GraphProduct ; rdfs:label "SLSO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Space Life Sciences Ontology (SLSO), produced by KG-Bioportal from the BioPortal submission. The archive contains SLSO_nodes.tsv and SLSO_edges.tsv." ; schema1:url . kgr:slso.obo a schema1:OntologyProduct ; rdfs:label "slso.obo" ; dcterms:description "Space Life Sciences Ontology in OBO format" ; schema1:url . kgr:slso.owl a schema1:OntologyProduct ; rdfs:label "slso.owl" ; dcterms:description "Space Life Sciences Ontology in OWL format" ; schema1:url . kgr:smart.list-genomes a schema1:GraphicalInterface ; rdfs:label "SMART Genome List" ; dcterms:description "Genomic SMART genome listing interface." ; schema1:url . kgr:smart.portal a schema1:GraphicalInterface ; rdfs:label "SMART Portal" ; dcterms:description "Main SMART portal for protein domain annotation and architecture analysis." ; schema1:url . kgr:smart.search a schema1:GraphicalInterface ; rdfs:label "SMART Search" ; dcterms:description "SMART search interface for querying proteins and domain annotations." ; schema1:url . kgr:smartapi.api a schema1:ProgrammingInterface ; rdfs:label "SmartAPI Registry API" ; dcterms:description "REST API returning registered SmartAPI metadata, with query, metadata retrieval and registration endpoints." ; schema1:url . kgr:smartapi.api-docs a schema1:DocumentationProduct ; rdfs:label "SmartAPI API Documentation" ; dcterms:description "Interactive OpenAPI documentation for the SmartAPI registry API itself." ; schema1:url . kgr:smartapi.code a schema1:ProcessProduct ; rdfs:label "SmartAPI Source Code" ; dcterms:description "Source code for the SmartAPI registry web application and API." ; schema1:url . kgr:smartapi.docs a schema1:DocumentationProduct ; rdfs:label "SmartAPI Guide" ; dcterms:description "SmartAPI user guide covering how to write, annotate, validate and register SmartAPI metadata, including the Translator extensions." ; schema1:url . kgr:smartapi.metadata-repository a schema1:Product ; rdfs:label "SmartAPI Metadata Repository" ; dcterms:description "GitHub repository where API providers can host the SmartAPI metadata YAML files that they register in SmartAPI." ; schema1:url . kgr:smartapi.metakg a schema1:ProgrammingInterface ; rdfs:label "SmartAPI Translator Meta Knowledge Graph API" ; dcterms:description "API endpoint returning the Translator meta knowledge graph, a set of subject-predicate-object edges (Biolink Model categories and predicates) built from the x-bte and TRAPI metadata of registered APIs, each linked to the APIs that provide it." ; schema1:url . kgr:smartapi.portal a schema1:GraphicalInterface ; rdfs:label "SmartAPI Registry Portal" ; dcterms:description "SmartAPI registry web portal for searching and browsing registered API metadata, with an interactive documentation page for each API." ; schema1:url . kgr:smartapi.translator-portal a schema1:GraphicalInterface ; rdfs:label "SmartAPI Translator Portal" ; dcterms:description "SmartAPI Translator portal for browsing APIs registered with the NCATS Translator extensions and exploring the Translator meta knowledge graph." ; schema1:url . kgr:smithsonian-nmnh a "Organization" ; rdfs:label "Smithsonian Institution's National Museum of Natural History" . kgr:sniff.browser a schema1:GraphicalInterface ; rdfs:label "Sniff web interface" ; dcterms:description "The Sniff web interface, providing browsers for breeds, genes, diseases, variants, and contributing studies, an interactive atlas view, and a natural-language query view." ; schema1:url . kgr:sniff.federation-manifest a schema1:Product ; rdfs:label "Sniff KGX federation export manifest" ; dcterms:description "A JSON manifest for the Sniff KGX federation export, providing node and edge counts, per-predicate and per-evidence-tier breakdowns, build provenance, and SHA256 checksums for verification of the bundle." ; schema1:url . kgr:sniff.mcp a schema1:ProgrammingInterface ; rdfs:label "sniff-mcp" ; dcterms:description "A Model Context Protocol server exposing Sniff data for programmatic and agent-based access." ; schema1:url . kgr:snodb.about a schema1:DocumentationProduct ; rdfs:label "About and Help Documentation" ; dcterms:description "Comprehensive documentation about data sources, methods, and curation processes" ; schema1:url . kgr:snodb.abundance a schema1:Product ; rdfs:label "Abundance Data" ; dcterms:description "snoRNA and host gene abundance data from TGIRT-Seq across tissues and cancer cell lines" ; schema1:url . kgr:snodb.abundance-viewer a schema1:GraphicalInterface ; rdfs:label "Abundance Viewer" ; dcterms:description "Interactive abundance viewer for visualizing snoRNA expression across tissues and cell lines" ; schema1:url . kgr:snodb.canonical-interactions a schema1:Product ; rdfs:label "Canonical snoRNA-RNA Interactions" ; dcterms:description "Canonical snoRNA-rRNA and snoRNA-snRNA interactions from multiple sources" ; schema1:url . kgr:snodb.conservation a schema1:Product ; rdfs:label "Conservation Data" ; dcterms:description "Conservation data including PhastCons scores for 100 vertebrates from UCSC genome browser" ; schema1:url . kgr:snodb.copies a schema1:Product ; rdfs:label "snoRNA Copy Data" ; dcterms:description "snoRNA copy information based on RFAM classification" ; schema1:url . kgr:snodb.experiment-details a schema1:DocumentationProduct ; rdfs:label "Experiment Details" ; dcterms:description "Detailed information about TGIRT-Seq data processing and experimental methods" ; schema1:url . kgr:snodb.export a schema1:Product ; rdfs:label "Data Export" ; dcterms:description "Exportable data tables with advanced search and filtering capabilities" ; schema1:url . kgr:snodb.host-genes a schema1:Product ; rdfs:label "Host Gene Data" ; dcterms:description "Host gene information with functional annotations from Gene Ontology" ; schema1:url . kgr:snodb.motifs a schema1:Product ; rdfs:label "Motif and Guide Region Data" ; dcterms:description "snoRNA motif sequences and guide regions (boxes C, D, C', D' for C/D box snoRNAs; H and ACA boxes for H/ACA snoRNAs)" ; schema1:url . kgr:snodb.noncanonical-interactions a schema1:Product ; rdfs:label "Non-canonical snoRNA-RNA Interactions" ; dcterms:description "Non-canonical snoRNA-RNA interactions from RISE database" ; schema1:url . kgr:snodb.portal a schema1:GraphicalInterface ; rdfs:label "snoDB 2.0 Portal" ; dcterms:description "Web portal for searching, browsing, and analyzing human snoRNA data with interactive tables and visualization tools" ; schema1:url . kgr:snodb.protein-interactions a schema1:Product ; rdfs:label "snoRNA-Protein Interactions" ; dcterms:description "snoRNA-protein interactions from ENCODE eCLIP data of 150 RNA binding proteins" ; schema1:url . kgr:snodb.rrna-modifications a schema1:GraphicalInterface ; rdfs:label "rRNA Chemical Modifications Browser" ; dcterms:description "Browser for exploring rRNA chemical modification sites and their guide snoRNAs" ; schema1:url . kgr:snodb.rrna-mods a schema1:Product ; rdfs:label "rRNA Modification Data" ; dcterms:description "rRNA modification positions with validation status and modification levels from multiple studies" ; schema1:url . kgr:snodb.sequence-search a schema1:GraphicalInterface ; rdfs:label "Sequence Search Tool" ; dcterms:description "Sequence similarity search tool for finding snoRNAs by sequence" ; schema1:url . kgr:snodb.sequences a schema1:Product ; rdfs:label "snoRNA Sequences" ; dcterms:description "Database of human snoRNA sequences with GRCh38 genomic coordinates" ; schema1:url . kgr:snodb.snorupdate a schema1:ProcessProduct ; rdfs:label "snoRupdate" ; dcterms:description "Tool for integrating snoDB snoRNAs into Ensembl or RefSeq GTF annotation files" ; schema1:url . kgr:snodb.statistics a schema1:GraphicalInterface ; rdfs:label "Statistics Dashboard" ; dcterms:description "Statistics dashboard showing snoRNA type distributions, length distributions, and target biotypes" ; schema1:url . kgr:snodb.tutorial a schema1:DocumentationProduct ; rdfs:label "Tutorial" ; dcterms:description "Interactive tutorial for navigating and using snoDB features" ; schema1:url . kgr:snomedct.browser a schema1:GraphicalInterface ; rdfs:label "SNOMED CT Browser" ; dcterms:description "The SNOMED International browser for exploring the SNOMED CT terminology." ; schema1:url . kgr:snomedct.international.content a schema1:OntologyProduct ; rdfs:label "SNOMED CT International Edition" ; dcterms:description "The monthly release of the International Edition of SNOMED CT, the core release from SNOMED International, as RF2 files." ; schema1:url . kgr:snomedct.nursing a schema1:OntologyProduct ; rdfs:label "SNOMED CT Nursing Problem List Subset" ; dcterms:description "A frequently used subset of SNOMED CT concepts for nursing documentation in electronic health records. August 2017 release." ; schema1:url . kgr:snomedct.us.content a schema1:OntologyProduct ; rdfs:label "SNOMED CT US Edition" ; dcterms:description "The biannual release of the US Edition of SNOMED CT, combining content from both the US Extension and International releases." ; schema1:url . kgr:snopy.about a schema1:DocumentationProduct ; rdfs:label "About snOPY" ; dcterms:description "About page with database description, methods, and citation information" ; schema1:url . kgr:snopy.blast a schema1:ProgrammingInterface ; rdfs:label "BLAST Interface" ; dcterms:description "BLAST interface for sequence similarity searches against snoRNA sequences" ; schema1:url . kgr:snopy.box-cd-snornas a schema1:Product ; rdfs:label "Box C/D snoRNAs" ; dcterms:description "Curated snoRNA sequences for box C/D class guiding 2'-O-methylation" ; schema1:url . kgr:snopy.box-haca-snornas a schema1:Product ; rdfs:label "Box H/ACA snoRNAs" ; dcterms:description "Curated snoRNA sequences for box H/ACA class guiding pseudouridylation" ; schema1:url . kgr:snopy.intronic-loci a schema1:Product ; rdfs:label "Intronic snoRNA Loci" ; dcterms:description "Information about intronic snoRNA gene loci within protein-coding host genes" ; schema1:url . kgr:snopy.monocistronic-loci a schema1:Product ; rdfs:label "Monocistronic snoRNA Loci" ; dcterms:description "Information about monocistronic snoRNA gene loci with single genes" ; schema1:url . kgr:snopy.ortholog-data a schema1:Product ; rdfs:label "snoRNA Ortholog Data" ; dcterms:description "Orthologous snoRNA relationships identified through target RNA conservation" ; schema1:url . kgr:snopy.orthologs a schema1:GraphicalInterface ; rdfs:label "Ortholog Browser" ; dcterms:description "Ortholog browser for exploring snoRNA orthologous relationships across species" ; schema1:url . kgr:snopy.polycistronic-loci a schema1:Product ; rdfs:label "Polycistronic snoRNA Loci" ; dcterms:description "Information about polycistronic snoRNA gene clusters with multiple genes" ; schema1:url . kgr:snopy.portal a schema1:GraphicalInterface ; rdfs:label "snOPY Portal" ; dcterms:description "Web portal for browsing and searching snoRNA orthological gene information" ; schema1:url . kgr:snopy.rrna-modifications a schema1:Product ; rdfs:label "rRNA Modification Sites" ; dcterms:description "Mapped modification sites on rRNA targets" ; schema1:url . kgr:snopy.search a schema1:GraphicalInterface ; rdfs:label "Search Interface" ; dcterms:description "Search interface for querying snoRNAs by species, box type, target RNA, organization, keywords, and curation status" ; schema1:url . kgr:snopy.snrna-modifications a schema1:Product ; rdfs:label "snRNA Modification Sites" ; dcterms:description "Mapped modification sites on snRNA targets" ; schema1:url . kgr:snopy.statistics a schema1:DocumentationProduct ; rdfs:label "Statistics" ; dcterms:description "Database statistics showing organism coverage and entry counts" ; schema1:url . kgr:snopy.target-rna a schema1:GraphicalInterface ; rdfs:label "Target RNA Viewer" ; dcterms:description "Target RNA viewer for exploring modification sites on rRNA and snRNA targets" ; schema1:url . kgr:snornadatabase.blast a schema1:ProgrammingInterface ; rdfs:label "snoRNABase BLAST" ; dcterms:description "BLAST search interface for sequence similarity searches against human sno/scaRNAs" ; schema1:url . kgr:snornadatabase.browse a schema1:GraphicalInterface ; rdfs:label "snoRNABase Browse" ; dcterms:description "Browse function for viewing and downloading snoRNA sequences in FASTA format" ; schema1:url . kgr:snornadatabase.find_guide a schema1:GraphicalInterface ; rdfs:label "snoRNABase Find Guide RNA" ; dcterms:description "Tool for finding snoRNAs that guide modification of specific nucleotides in rRNAs and spliceosomal RNAs" ; schema1:url . kgr:snornadatabase.portal a schema1:GraphicalInterface ; rdfs:label "snoRNABase Web Portal" ; dcterms:description "Web portal for searching and browsing human snoRNA and scaRNA sequences, targets, and modifications" ; schema1:url . kgr:snornadatabase.search a schema1:GraphicalInterface ; rdfs:label "snoRNABase Search" ; dcterms:description "Search engine for finding snoRNAs by name, length, GenBank accession, or target RNA" ; schema1:url . kgr:snpeff.databases a schema1:Product ; rdfs:label "SnpEff Genome Databases" ; dcterms:description "Over 38,000 pre-built genome databases available for automatic download and annotation" ; schema1:url . kgr:snpeff.documentation a schema1:GraphicalInterface ; rdfs:label "SnpEff Documentation" ; dcterms:description "Comprehensive documentation website for SnpEff with usage examples, tutorials, and command references" ; schema1:url . kgr:snpeff.download a schema1:ProgrammingInterface ; rdfs:label "SnpEff Download Package" ; dcterms:description "SnpEff core package with command-line interface for variant annotation and effect prediction" ; schema1:url . kgr:snpeff.github a schema1:ProgrammingInterface ; rdfs:label "SnpEff GitHub Repository" ; dcterms:description "SnpEff source code repository on GitHub" ; schema1:url . kgr:snpeff.snpsift-documentation a schema1:GraphicalInterface ; rdfs:label "SnpSift Documentation" ; dcterms:description "SnpSift documentation covering tools for filtering, annotating, and manipulating VCF files" ; schema1:url . kgr:snpeff.sourceforge a schema1:Product ; rdfs:label "SnpEff SourceForge Archive" ; dcterms:description "Historical releases and versions of SnpEff available on SourceForge" ; schema1:url . kgr:so.kg-bioportal a schema1:GraphProduct ; rdfs:label "SO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Sequence Types and Features Ontology (SO), produced by KG-Bioportal from the BioPortal submission. The archive contains SO_nodes.tsv and SO_edges.tsv." ; schema1:url . kgr:so.obo a schema1:OntologyProduct ; rdfs:label "Main SO release in OBO Format" ; dcterms:description "Main SO release in OBO Format" ; schema1:url . kgr:so.owl a schema1:OntologyProduct ; rdfs:label "Main SO OWL release" ; dcterms:description "Main SO OWL release" ; schema1:url . kgr:so.subsets.SOFA.obo a schema1:OntologyProduct ; rdfs:label "Sequence Ontology Feature Annotation (SOFA) subset (OBO Format)" ; dcterms:description "This subset includes only locatable sequence features and is designed for use in such outputs as GFF3" ; schema1:url . kgr:so.subsets.SOFA.owl a schema1:OntologyProduct ; rdfs:label "Sequence Ontology Feature Annotation (SOFA) subset (OWL)" ; dcterms:description "This subset includes only locatable sequence features and is designed for use in such outputs as GFF3" ; schema1:url . kgr:sockg.sparql a schema1:ProgrammingInterface ; rdfs:label "SOC-KG SPARQL" ; dcterms:description "SPARQL endpoint for SOC-KG" ; schema1:url . kgr:sockg.tpf a schema1:ProgrammingInterface ; rdfs:label "SOC-KG TPF" ; dcterms:description "Triple Pattern Fragments endpoint for SOC-KG" ; schema1:url . kgr:sopharm.kg-bioportal a schema1:GraphProduct ; rdfs:label "SOPHARM KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Suggested Ontology for Pharmacogenomics (SOPHARM), produced by KG-Bioportal from the BioPortal submission. The archive contains SOPHARM_nodes.tsv and SOPHARM_edges.tsv." ; schema1:url . kgr:sopharm.obo a schema1:OntologyProduct ; rdfs:label "sopharm.obo" ; dcterms:description "Suggested Ontology for Pharmacogenomics in OBO format" ; schema1:url . kgr:sopharm.owl a schema1:OntologyProduct ; rdfs:label "sopharm.owl" ; dcterms:description "Suggested Ontology for Pharmacogenomics in OWL format" ; schema1:url . kgr:spar a "Organization" ; rdfs:label "SPAR (Semantic Publishing and Referencing) Ontologies" . kgr:sparc.data a schema1:Product ; rdfs:label "SPARC Data Sets" ; dcterms:description "Curated SPARC data sets describing the structure and function of the autonomic and peripheral nervous system and its connections to internal organs" ; schema1:url . kgr:sparc.portal a schema1:GraphicalInterface ; rdfs:label "SPARC Portal" ; dcterms:description "SPARC Portal for browsing, visualizing, and downloading SPARC data sets, anatomical maps, and computational models of the peripheral nervous system" ; schema1:url . kgr:spatialkg.sparql a schema1:ProgrammingInterface ; rdfs:label "SAWGraph Spatial KG SPARQL" ; dcterms:description "SPARQL endpoint for SAWGraph Spatial KG" ; schema1:url . kgr:spatialkg.tpf a schema1:ProgrammingInterface ; rdfs:label "SAWGraph Spatial KG TPF" ; dcterms:description "Triple Pattern Fragments endpoint for SAWGraph Spatial KG" ; schema1:url . kgr:spd.kg-bioportal a schema1:GraphProduct ; rdfs:label "SPD KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Spider Anatomy Ontology (SPD), produced by KG-Bioportal from the BioPortal submission. The archive contains SPD_nodes.tsv and SPD_edges.tsv." ; schema1:url . kgr:spd.owl a schema1:OntologyProduct ; rdfs:label "spd.owl" ; dcterms:description "Spider Ontology in OWL format" ; schema1:url . kgr:spdx.license-list-data a schema1:ProcessProduct ; rdfs:label "SPDX License List Data Repository" ; dcterms:description "Machine-readable source repository for SPDX license list data files and releases." ; schema1:url . kgr:spdx.portal a schema1:DocumentationProduct ; rdfs:label "SPDX License List Portal" ; dcterms:description "Human-readable SPDX License List with canonical identifiers, exception pages, and matching guidance." ; schema1:url . kgr:spoke-okn.sparql a schema1:ProgrammingInterface ; rdfs:label "SPOKE-OKN SPARQL" ; dcterms:description "SPARQL endpoint for SPOKE-OKN" ; schema1:url . kgr:spoke-okn.tpf a schema1:ProgrammingInterface ; rdfs:label "SPOKE-OKN TPF" ; dcterms:description "Triple Pattern Fragments endpoint for SPOKE-OKN" ; schema1:url . kgr:spoke.docs a schema1:DocumentationProduct ; rdfs:label "SPOKE Data and Tools" ; dcterms:description "SPOKE data and tools page describing access paths, visualizations, and related resources." ; schema1:url . kgr:spoke.neighborhood_explorer a schema1:GraphicalInterface ; rdfs:label "SPOKE Neighborhood Explorer" ; dcterms:description "Web interface that allows searching SPOKE for a node of interest and viewing its immediate connectivity neighborhood." ; schema1:url . kgr:spoke.sparql a schema1:ProgrammingInterface ; rdfs:label "SPOKE SPARQL Endpoint" ; dcterms:description "SPARQL endpoint for querying SPOKE knowledge graph via the OKN FRINK service" ; schema1:url . kgr:sra.docs a schema1:DocumentationProduct ; rdfs:label "SRA Documentation" ; dcterms:description "Official SRA documentation covering submission, search, download, cloud usage, and archive behavior." ; schema1:url . kgr:sra.portal a schema1:GraphicalInterface ; rdfs:label "SRA Portal" ; dcterms:description "Main SRA search and browse interface for studies, experiments, runs, and associated metadata." ; schema1:url . kgr:sra.run_selector a schema1:GraphicalInterface ; rdfs:label "SRA Run Selector" ; dcterms:description "SRA Run Selector interface for exporting run-level metadata tables and filtering search results." ; schema1:url . kgr:sri-reference-kg.api a schema1:ProgrammingInterface ; rdfs:label "Monarch KG API" ; dcterms:description "Public API documentation for querying the Monarch Initiative knowledge graph that underlies the SRI reference KG distribution." ; schema1:url . kgr:sri-reference-kg.docs a schema1:DocumentationProduct ; rdfs:label "Monarch KG Documentation" ; dcterms:description "Documentation and status pages describing the Monarch knowledge graph, source inventory, downloads, and quality-control process." ; schema1:url . kgr:srpdb.2d-structures a schema1:Product ; rdfs:label "SRP RNA 2D Structures" ; dcterms:description "RNA secondary structure diagrams with base pairs proven by comparative sequence analysis" ; schema1:url . kgr:srpdb.3d-structures a schema1:Product ; rdfs:label "SRP 3D Structures" ; dcterms:description "Three-dimensional structural information for SRP components" ; schema1:url . kgr:srpdb.about a schema1:DocumentationProduct ; rdfs:label "About SRPDB" ; dcterms:description "Comprehensive information about SRPDB contents and usage" ; schema1:url . kgr:srpdb.animal-rna a schema1:Product ; rdfs:label "Animal SRP RNA Alignments" ; dcterms:description "Multiple sequence alignments of animal SRP RNAs (119 sequences)" ; schema1:url . kgr:srpdb.archaeal-rna a schema1:Product ; rdfs:label "Archaeal SRP RNA Alignments" ; dcterms:description "Multiple sequence alignments of archaeal SRP RNAs (81 sequences)" ; schema1:url . kgr:srpdb.bibliography a schema1:DocumentationProduct ; rdfs:label "Bibliography" ; dcterms:description "Bibliography of SRP-related publications" ; schema1:url . kgr:srpdb.cam-kinase a schema1:Product ; rdfs:label "CaM Kinase II Sequences" ; dcterms:description "Aligned and annotated sequences for CaM kinase II" ; schema1:url . kgr:srpdb.comparative-analysis a schema1:DocumentationProduct ; rdfs:label "Comparative Sequence Analysis Documentation" ; dcterms:description "Explanation of comparative sequence analysis methodology" ; schema1:url . kgr:srpdb.cpsrp43 a schema1:Product ; rdfs:label "cpSRP43 Protein Sequences" ; dcterms:description "Aligned and annotated sequences for cpSRP43 protein" ; schema1:url . kgr:srpdb.flhf a schema1:Product ; rdfs:label "Flhf Protein Sequences" ; dcterms:description "Aligned and annotated sequences for Flhf protein" ; schema1:url . kgr:srpdb.ftsy a schema1:Product ; rdfs:label "SRP Receptor Alpha (FtsY) Sequences" ; dcterms:description "Aligned and annotated sequences for SRP receptor alpha subunit (FtsY)" ; schema1:url . kgr:srpdb.fungal-metazoan-rna a schema1:Product ; rdfs:label "Fungal/Metazoan SRP RNA Alignments" ; dcterms:description "Multiple sequence alignments of fungal/metazoan-group SRP RNAs (80 sequences)" ; schema1:url . kgr:srpdb.links a schema1:DocumentationProduct ; rdfs:label "Useful Links" ; dcterms:description "External links to SRP-related resources" ; schema1:url . kgr:srpdb.long-bacterial-rna a schema1:Product ; rdfs:label "Long Bacterial SRP RNA Alignments" ; dcterms:description "Multiple sequence alignments of long bacterial (6S) SRP RNAs (96 sequences)" ; schema1:url . kgr:srpdb.models a schema1:GraphicalInterface ; rdfs:label "SRP Models" ; dcterms:description "Collection of SRP structural models" ; schema1:url . kgr:srpdb.more-protein-browser a schema1:GraphicalInterface ; rdfs:label "More Protein Browser" ; dcterms:description "Browser for additional proteins including SRP receptor subunits, Flhf, and CaM kinase II" ; schema1:url . kgr:srpdb.motifs a schema1:Product ; rdfs:label "SRP RNA Motifs" ; dcterms:description "Conserved sequence motifs in SRP RNAs" ; schema1:url . kgr:srpdb.overview a schema1:DocumentationProduct ; rdfs:label "SRP Overview" ; dcterms:description "Overview of signal recognition particle structure and function" ; schema1:url . kgr:srpdb.plant-rna a schema1:Product ; rdfs:label "Plant SRP RNA Alignments" ; dcterms:description "Multiple sequence alignments of plant SRP RNAs (114 sequences)" ; schema1:url . kgr:srpdb.portal a schema1:GraphicalInterface ; rdfs:label "SRPDB Portal" ; dcterms:description "Web portal for browsing SRP RNA and protein sequences with phylogenetic organization" ; schema1:url . kgr:srpdb.protozoan-rna a schema1:Product ; rdfs:label "Protozoan SRP RNA Alignments" ; dcterms:description "Multiple sequence alignments of protozoan SRP RNAs (82 sequences)" ; schema1:url . kgr:srpdb.receptor-beta a schema1:Product ; rdfs:label "SRP Receptor Beta Sequences" ; dcterms:description "Aligned and annotated sequences for SRP receptor beta subunit" ; schema1:url . kgr:srpdb.short-bacterial-rna a schema1:Product ; rdfs:label "Short Bacterial SRP RNA Alignments" ; dcterms:description "Multiple sequence alignments of short bacterial (4.5S) SRP RNAs (537 sequences)" ; schema1:url . kgr:srpdb.srp-protein-browser a schema1:GraphicalInterface ; rdfs:label "SRP Protein Browser" ; dcterms:description "Browser for SRP protein sequences including SRP9, SRP14, SRP19, SRP21, SRP54, SRP68, SRP72, and cpSRP43" ; schema1:url . kgr:srpdb.srp-rna-browser a schema1:GraphicalInterface ; rdfs:label "SRP RNA Browser" ; dcterms:description "Browser for SRP RNA sequences organized phylogenetically and alphabetically" ; schema1:url . kgr:srpdb.srp14 a schema1:Product ; rdfs:label "SRP14 Protein Sequences" ; dcterms:description "Aligned and annotated sequences for SRP14 protein" ; schema1:url . kgr:srpdb.srp19 a schema1:Product ; rdfs:label "SRP19 Protein Sequences" ; dcterms:description "Aligned and annotated sequences for SRP19 protein" ; schema1:url . kgr:srpdb.srp21 a schema1:Product ; rdfs:label "SRP21 Protein Sequences" ; dcterms:description "Aligned and annotated sequences for SRP21 protein" ; schema1:url . kgr:srpdb.srp54 a schema1:Product ; rdfs:label "SRP54 Protein Sequences" ; dcterms:description "Aligned and annotated sequences for SRP54 protein" ; schema1:url . kgr:srpdb.srp68 a schema1:Product ; rdfs:label "SRP68 Protein Sequences" ; dcterms:description "Aligned and annotated sequences for SRP68 protein" ; schema1:url . kgr:srpdb.srp72 a schema1:Product ; rdfs:label "SRP72 Protein Sequences" ; dcterms:description "Aligned and annotated sequences for SRP72 protein" ; schema1:url . kgr:srpdb.srp9 a schema1:Product ; rdfs:label "SRP9 Protein Sequences" ; dcterms:description "Aligned and annotated sequences for SRP9 protein" ; schema1:url . kgr:srpdb.structures a schema1:GraphicalInterface ; rdfs:label "SRP Structures" ; dcterms:description "Gallery of SRP structures from experimental determinations" ; schema1:url . kgr:ssurgo.download a schema1:Product ; rdfs:label "NRCS Soils Data Download Portal" ; dcterms:description "Official NRCS Box-hosted distribution portal for downloading SSURGO soil survey spatial and tabular data by survey area." ; schema1:url . kgr:ssurgo.websoilsurvey a schema1:Product ; rdfs:label "Web Soil Survey" ; dcterms:description "Web Soil Survey provides interactive access to SSURGO soil data, allowing users to define areas of interest and view, print, and download detailed soil maps and property reports." ; schema1:url . kgr:startgeo.portal a schema1:GraphicalInterface ; rdfs:label "STARGEO Web Application" ; dcterms:description "Historical STARGEO web application for searching GEO datasets by differential expression signatures" ; schema1:url . kgr:stato.kg-bioportal a schema1:GraphProduct ; rdfs:label "STATO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Statistics Ontology (STATO), produced by KG-Bioportal from the BioPortal submission. The archive contains STATO_nodes.tsv and STATO_edges.tsv." ; schema1:url . kgr:stato.owl a schema1:OntologyProduct ; rdfs:label "stato.owl" ; dcterms:description "The Statistical Methods Ontology in OWL format" ; schema1:url . kgr:stellar.code a schema1:ProcessProduct ; rdfs:label "STELLAR Code" ; dcterms:description "PyTorch implementation of the STELLAR algorithm for cell-type discovery and identification" ; schema1:url . kgr:stellar.datasets a schema1:Product ; rdfs:label "STELLAR Datasets" ; dcterms:description "CODEX multiplexed imaging datasets used in STELLAR research" ; schema1:url . kgr:stellar.demo a schema1:GraphicalInterface ; rdfs:label "STELLAR Demo Notebook" ; dcterms:description "Demo Jupyter notebook showing example usage of STELLAR on downsampled datasets" ; schema1:url . kgr:string.api a schema1:ProgrammingInterface ; rdfs:label "STRING REST API" ; dcterms:description "RESTful API for programmatic access to STRING data" ; schema1:url . kgr:string.clusters.info a schema1:Product ; rdfs:label "STRING Clusters Info" ; dcterms:description "hierarchical STRING clusters annotations" ; schema1:url . kgr:string.clusters.proteins a schema1:Product ; rdfs:label "STRING Clusters Proteins" ; dcterms:description "hierarchical STRING clusters and their proteins" ; schema1:url . kgr:string.clusters.tree a schema1:Product ; rdfs:label "STRING Clusters Tree" ; dcterms:description "hierarchical STRING clusters tree (represented as child-parent relationship)" ; schema1:url . kgr:string.cog.mappings a schema1:Product ; rdfs:label "STRING COG Mappings" ; dcterms:description "LCA orthologous groups (COGs,NOGs,KOGs,...) and their proteins" ; schema1:url . kgr:string.database.evidence a schema1:Product ; rdfs:label "STRING Database Evidence Schema" ; dcterms:description "full database, part III: interaction evidence (excluding license-restricted data)" ; schema1:url . kgr:string.database.items a schema1:Product ; rdfs:label "STRING Database Items Schema" ; dcterms:description "full database, part I: the players (proteins, species, COGs,...)" ; schema1:url . kgr:string.database.schema a schema1:DocumentationProduct ; rdfs:label "STRING Database Schema" ; dcterms:description "STRING database schema" ; schema1:url . kgr:string.protein.aliases a schema1:Product ; rdfs:label "STRING Protein Aliases" ; dcterms:description "aliases for STRING proteins: locus names, accessions, descriptions" ; schema1:url . kgr:string.protein.enrichment.terms a schema1:Product ; rdfs:label "STRING Protein Enrichment Terms" ; dcterms:description "list of terms associated with proteins used in the STRING enrichment" ; schema1:url . kgr:string.protein.homology a schema1:Product ; rdfs:label "STRING Protein Homology" ; dcterms:description "SW alignment scores between proteins within each STRING species" ; schema1:url . kgr:string.protein.info a schema1:Product ; rdfs:label "STRING Protein Info" ; dcterms:description "list of STRING proteins incl. their display names and descriptions" ; schema1:url . kgr:string.protein.network.embeddings a schema1:Product ; rdfs:label "STRING Protein Network Embeddings" ; dcterms:description "cross-species (aligned) eukaryotic protein network embeddings" ; schema1:url . kgr:string.protein.orthology a schema1:Product ; rdfs:label "STRING Protein Orthology" ; dcterms:description "hierarchical eggNOG orthologous groups and their proteins" ; schema1:url . kgr:string.protein.sequence.embeddings a schema1:Product ; rdfs:label "STRING Protein Sequence Embeddings" ; dcterms:description "ProtT5 eukaryotic protein sequence embeddings" ; schema1:url . kgr:string.protein.sequences a schema1:Product ; rdfs:label "STRING Protein Sequences" ; dcterms:description "sequences of the proteins in STRING (can be used as a BLAST db)" ; schema1:url . kgr:string.species a schema1:Product ; rdfs:label "STRING Species List" ; dcterms:description "organisms in STRING" ; schema1:url . kgr:string.species.tree a schema1:Product ; rdfs:label "STRING Species Tree" ; dcterms:description "STRING tree of species" ; schema1:url . kgr:string.web a schema1:GraphicalInterface ; rdfs:label "STRING Web Interface" ; dcterms:description "Web interface for searching, visualizing, and analyzing protein-protein interaction networks" ; schema1:url . kgr:stringdb a "Organization" ; rdfs:label "STRING/EMBL Team" . kgr:sty.docs a schema1:DocumentationProduct ; rdfs:label "UMLS Semantic Network Documentation" ; dcterms:description "NLM documentation for the UMLS Semantic Network, including semantic type definitions and semantic relations." ; schema1:url . kgr:sty.kg-bioportal a schema1:GraphProduct ; rdfs:label "STY KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Semantic Types Ontology (STY), produced by KG-Bioportal from the BioPortal submission. The archive contains STY_nodes.tsv and STY_edges.tsv." ; schema1:url . kgr:sty.semantic-groups a schema1:Product ; rdfs:label "UMLS Semantic Groups File" ; dcterms:description "Semantic Groups mapping file that aggregates semantic types into coarser-grained categories." ; schema1:url . kgr:sty.semantic-network a schema1:Product ; rdfs:label "UMLS Semantic Network Files" ; dcterms:description "Current UMLS Semantic Network release archive from NLM." ; schema1:url . kgr:sudokn.sparql a schema1:ProgrammingInterface ; rdfs:label "SUDOKN SPARQL" ; dcterms:description "SPARQL endpoint for SUDOKN" ; schema1:url . kgr:sudokn.tpf a schema1:ProgrammingInterface ; rdfs:label "SUDOKN TPF" ; dcterms:description "Triple Pattern Fragments endpoint for SUDOKN" ; schema1:url . kgr:sugi-atlas.code a schema1:ProcessProduct ; rdfs:label "Sugi Atlas Pipeline" ; dcterms:description "Python pipeline that queries BioBTree and builds, tests and releases the atlas corpus. Versions the pipeline only; the generated corpus is not attached to releases." ; schema1:url . kgr:sugi-atlas.preprint a schema1:DocumentationProduct ; rdfs:label "Sugi Atlas Preprint (HTML)" ; dcterms:description "HTML version of the Sugi Atlas preprint describing the build method, page contract, cross-entity mesh and corpus statistics." ; schema1:url . kgr:sugi-atlas.sources a schema1:DocumentationProduct ; rdfs:label "Sugi Atlas Data Sources" ; dcterms:description "List of the 87 primary databases integrated by BioBTree that underlie Sugi Atlas, each with its citing paper." ; schema1:url . kgr:surechembl.bulk-data a schema1:Product ; rdfs:label "SureChEMBL Bulk Data" ; dcterms:description "Bulk download of the entire annotated SureChEMBL database as a set of core Parquet datasets, including chemical compounds (with SMILES, InChI, and molecular weight), patent metadata, compound-to-patent mappings, and extracted biomedical entities. A new complete version is released every two weeks via the EMBL-EBI FTP server." ; schema1:url . kgr:surechembl.docs a schema1:DocumentationProduct ; rdfs:label "SureChEMBL Documentation" ; dcterms:description "Official SureChEMBL documentation describing the data sources, search capabilities, bulk data schema, and download options." ; schema1:url . kgr:surechembl.search a schema1:GraphicalInterface ; rdfs:label "SureChEMBL Web Search Interface" ; dcterms:description "Web-based search interface for SureChEMBL providing combined chemical structure and keyword search across compounds mined from the patent literature, with links from compounds to the patent documents in which they were found." ; schema1:url . kgr:swisslipid.api a schema1:ProgrammingInterface ; rdfs:label "SwissLipids API" ; dcterms:description "Public API page for programmatic SwissLipids access." ; schema1:url . kgr:swisslipid.lipids a schema1:Product ; rdfs:label "SwissLipids Lipids" ; dcterms:description "Comprehensive TSV catalogue of SwissLipids lipid entities and identifiers." ; schema1:url . kgr:swisslipid.portal a schema1:GraphicalInterface ; rdfs:label "SwissLipids Portal" ; dcterms:description "Main SwissLipids interface for browsing lipid classes and analytes." ; schema1:url . kgr:swisslipid.tissues a schema1:Product ; rdfs:label "SwissLipids Tissues" ; dcterms:description "TSV export of lipid tissue and cell annotations with taxon and evidence tags." ; schema1:url . kgr:swissmodel.api a schema1:ProgrammingInterface ; rdfs:label "SWISS-MODEL API" ; dcterms:description "Programmatic API for submitting and retrieving SWISS-MODEL tasks and model data." ; schema1:url . kgr:swissmodel.portal a schema1:GraphicalInterface ; rdfs:label "SWISS-MODEL Portal" ; dcterms:description "Main interface for automated protein structure homology modeling." ; schema1:url . kgr:swissmodel.repository a schema1:GraphicalInterface ; rdfs:label "SWISS-MODEL Repository" ; dcterms:description "Search and download interface for the SWISS-MODEL Repository of annotated homology models." ; schema1:url . kgr:swo.json a schema1:OntologyProduct ; rdfs:label "swo.json" ; dcterms:description "Software ontology in JSON format" ; schema1:url . kgr:swo.kg-bioportal a schema1:GraphProduct ; rdfs:label "SWO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Software Ontology (SWO), produced by KG-Bioportal from the BioPortal submission. The archive contains SWO_nodes.tsv and SWO_edges.tsv." ; schema1:url . kgr:swo.owl a schema1:OntologyProduct ; rdfs:label "swo.owl" ; dcterms:description "Software ontology in OWL format" ; schema1:url . kgr:symp.kg-bioportal a schema1:GraphProduct ; rdfs:label "SYMP KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Symptom Ontology (SYMP), produced by KG-Bioportal from the BioPortal submission. The archive contains SYMP_nodes.tsv and SYMP_edges.tsv." ; schema1:url . kgr:symp.obo a schema1:OntologyProduct ; rdfs:label "symp.obo" ; dcterms:description "Symptom Ontology in OBO format" ; schema1:url . kgr:symp.owl a schema1:OntologyProduct ; rdfs:label "symp.owl" ; dcterms:description "Symptom Ontology in OWL format" ; schema1:url . kgr:synlethdb.download a schema1:Product ; rdfs:label "SynLethDB Data Download" ; dcterms:description "Bulk downloads of SynLethDB synthetic lethality gene pairs, related interactions, and the SynLethKG knowledge graph, available in tabular and graph formats from the SynLethDB download page." ; schema1:url . kgr:synlethdb.portal a schema1:GraphicalInterface ; rdfs:label "SynLethDB Web Portal" ; dcterms:description "Web portal for browsing and searching synthetic lethality gene pairs, supporting evidence, and the SynLethKG knowledge graph." ; schema1:url . kgr:t3db.downloads a schema1:Product ; rdfs:label "T3DB Data Downloads" ; dcterms:description "Bulk downloads of the full T3DB dataset, including toxin records, toxin target records, and toxin-target associations in formats such as XML and SDF. Use is governed by the T3DB terms of use." ; schema1:url . kgr:t3db.portal a schema1:GraphicalInterface ; rdfs:label "T3DB Web Portal" ; dcterms:description "Web portal for browsing and searching T3DB toxins, their targets, and mechanisms of toxicity, with detailed annotation pages for each toxin record." ; schema1:url . kgr:t4fs.json a schema1:OntologyProduct ; rdfs:label "t4fs.json" ; dcterms:description "terms4FAIRskills in JSON format" ; schema1:url . kgr:t4fs.kg-bioportal a schema1:GraphProduct ; rdfs:label "T4FS KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of terms4FAIRskills (T4FS), produced by KG-Bioportal from the BioPortal submission. The archive contains T4FS_nodes.tsv and T4FS_edges.tsv." ; schema1:url . kgr:t4fs.obo a schema1:OntologyProduct ; rdfs:label "t4fs.obo" ; dcterms:description "terms4FAIRskills in OBO format" ; schema1:url . kgr:t4fs.owl a schema1:OntologyProduct ; rdfs:label "t4fs.owl" ; dcterms:description "terms4FAIRskills in OWL format" ; schema1:url . kgr:tads.kg-bioportal a schema1:GraphProduct ; rdfs:label "TADS KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Tick Gross Anatomy Ontology (TADS), produced by KG-Bioportal from the BioPortal submission. The archive contains TADS_nodes.tsv and TADS_edges.tsv." ; schema1:url . kgr:tads.obo a schema1:OntologyProduct ; rdfs:label "tads.obo" ; dcterms:description "Tick Anatomy Ontology in OBO format" ; schema1:url . kgr:tads.owl a schema1:OntologyProduct ; rdfs:label "tads.owl" ; dcterms:description "Tick Anatomy Ontology in OWL format" ; schema1:url . kgr:tahe.obo a schema1:OntologyProduct ; rdfs:label "tahe.obo" ; dcterms:description "Terminology of Anatomy of Human Embryology in OBO format" ; schema1:url . kgr:tahe.owl a schema1:OntologyProduct ; rdfs:label "tahe.owl" ; dcterms:description "Terminology of Anatomy of Human Embryology in OWL format" ; schema1:url . kgr:tahh.obo a schema1:OntologyProduct ; rdfs:label "tahh.obo" ; dcterms:description "Terminology of Anatomy of Human Histology in OBO format" ; schema1:url . kgr:tahh.owl a schema1:OntologyProduct ; rdfs:label "tahh.owl" ; dcterms:description "Terminology of Anatomy of Human Histology in OWL format" ; schema1:url . kgr:tao.kg-bioportal a schema1:GraphProduct ; rdfs:label "TAO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Teleost Anatomy Ontology (TAO), produced by KG-Bioportal from the BioPortal submission. The archive contains TAO_nodes.tsv and TAO_edges.tsv." ; schema1:url . kgr:tao.owl a schema1:OntologyProduct ; rdfs:label "tao.owl" ; dcterms:description "Teleost Anatomy Ontology in OWL format" ; schema1:url . kgr:tarbase.downloads-doc a schema1:DocumentationProduct ; rdfs:label "Downloads Documentation" ; dcterms:description "Downloads page with file format specifications and field descriptions" ; schema1:url . kgr:tarbase.help a schema1:DocumentationProduct ; rdfs:label "Help Documentation" ; dcterms:description "Comprehensive help documentation with query examples and filtering options" ; schema1:url . kgr:tarbase.homo-sapiens a schema1:Product ; rdfs:label "Homo sapiens Interactions" ; dcterms:description "Experimentally validated miRNA-gene interactions for Homo sapiens in tab-delimited format" ; schema1:url . kgr:tarbase.interactions a schema1:GraphicalInterface ; rdfs:label "Interactions Search" ; dcterms:description "Interactive search interface for querying miRNA targets and gene miRNomes with advanced filtering options" ; schema1:url . kgr:tarbase.mus-musculus a schema1:Product ; rdfs:label "Mus musculus Interactions" ; dcterms:description "Experimentally validated miRNA-gene interactions for Mus musculus in tab-delimited format" ; schema1:url . kgr:tarbase.other-species a schema1:Product ; rdfs:label "Other Species Interactions" ; dcterms:description "Experimentally validated miRNA-gene interactions for other species in tab-delimited format" ; schema1:url . kgr:tarbase.portal a schema1:GraphicalInterface ; rdfs:label "TarBase Portal" ; dcterms:description "Web portal for searching and browsing experimentally supported miRNA-gene interactions" ; schema1:url . kgr:tarbase.statistics a schema1:GraphicalInterface ; rdfs:label "Statistics" ; dcterms:description "Statistics page showing database content and coverage metrics" ; schema1:url . kgr:tarbase.textmining a schema1:GraphicalInterface ; rdfs:label "Text-Mining Interface" ; dcterms:description "Text-mining interface for literature-based interaction discovery" ; schema1:url . kgr:tarbase.viral a schema1:Product ; rdfs:label "Viral Species Interactions" ; dcterms:description "Experimentally validated viral miRNA-gene interactions in tab-delimited format" ; schema1:url . kgr:tarbase.visualizations a schema1:GraphicalInterface ; rdfs:label "Visualizations" ; dcterms:description "Network visualization tool for assessing combinatorial effects of multiple miRNAs on common gene targets" ; schema1:url . kgr:taxrank.kg-bioportal a schema1:GraphProduct ; rdfs:label "TAXRANK KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Taxonomic Rank Vocabulary (TAXRANK), produced by KG-Bioportal from the BioPortal submission. The archive contains TAXRANK_nodes.tsv and TAXRANK_edges.tsv." ; schema1:url . kgr:taxrank.obo a schema1:OntologyProduct ; rdfs:label "taxrank.obo" ; dcterms:description "Taxonomic rank vocabulary in OBO format" ; schema1:url . kgr:taxrank.owl a schema1:OntologyProduct ; rdfs:label "taxrank.owl" ; dcterms:description "Taxonomic rank vocabulary in OWL format" ; schema1:url . kgr:tcdb.blast a schema1:GraphicalInterface ; rdfs:label "TCDB BLAST" ; dcterms:description "Sequence similarity search interface against TCDB transporter sequences." ; schema1:url . kgr:tcdb.download.acc2tcid a schema1:Product ; rdfs:label "Accessions to TCIDs" ; dcterms:description "Tab-delimited table mapping protein accessions to TC identifiers. The URL ends in .py, but this endpoint serves data, not Python source code." ; schema1:url . kgr:tcdb.download.families a schema1:Product ; rdfs:label "TC Family Definitions" ; dcterms:description "Tab-delimited table with TC family definitions. The URL ends in .py, but this endpoint serves data, not Python source code." ; schema1:url . kgr:tcdb.download.fasta a schema1:Product ; rdfs:label "TCDB Protein Sequences" ; dcterms:description "Complete TCDB protein sequence export." ; schema1:url . kgr:tcdb.download.go a schema1:Product ; rdfs:label "TC Annotation Mapping Table" ; dcterms:description "Tab-delimited annotation mapping table for TC systems. The URL ends in .py, but this endpoint serves data, not Python source code." ; schema1:url . kgr:tcdb.download.pdb a schema1:Product ; rdfs:label "TC Structure Mapping Table" ; dcterms:description "Tab-delimited structure mapping table for TC systems. The URL ends in .py, but this endpoint serves data, not Python source code." ; schema1:url . kgr:tcdb.download.pfam a schema1:Product ; rdfs:label "TC Protein Family Mapping Table" ; dcterms:description "Tab-delimited protein family mapping table for TC systems. The URL ends in .py, but this endpoint serves data, not Python source code." ; schema1:url . kgr:tcdb.download.refseq a schema1:Product ; rdfs:label "Sequence Accessions to TCIDs" ; dcterms:description "Tab-delimited table mapping sequence accessions to TC identifiers. The URL ends in .py, but this endpoint serves data, not Python source code." ; schema1:url . kgr:tcdb.download.substrates a schema1:Product ; rdfs:label "TC Systems to Substrates Table" ; dcterms:description "Tab-delimited table mapping TC systems to substrate identifiers. The URL ends in .py, but this endpoint serves data, not Python source code." ; schema1:url . kgr:tcdb.download.superfamilies a schema1:Product ; rdfs:label "TC Superfamily Mapping" ; dcterms:description "Tab-delimited table mapping systems, subfamilies, and families to superfamilies. The URL ends in .py, but this endpoint serves data, not Python source code." ; schema1:url . kgr:tcdb.download.tcdoms a schema1:Product ; rdfs:label "tcDoms Archive" ; dcterms:description "Precomputed tcDoms dataset archive." ; schema1:url . kgr:tcdb.portal a schema1:GraphicalInterface ; rdfs:label "TCDB Portal" ; dcterms:description "Main web interface for browsing transporter families, proteins, and curated annotations." ; schema1:url . kgr:tcga.gdc_api a schema1:ProgrammingInterface ; rdfs:label "GDC API" ; dcterms:description "Genomic Data Commons Application Programming Interface for programmatic access to TCGA and other cancer genomic data" ; schema1:url . kgr:tcga.gdc_portal a schema1:Product ; rdfs:label "GDC Data Portal" ; dcterms:description "Genomic Data Commons Data Portal providing access to harmonized TCGA data with over 2.5 petabytes of cancer genomic data" ; schema1:url . kgr:tcga.gdc_submission a schema1:GraphicalInterface ; rdfs:label "GDC Data Submission Portal" ; dcterms:description "Data Submission Portal for uploading and managing cancer genomic data submissions to GDC" ; schema1:url . kgr:tera.chembl-to-mesh-csv a schema1:MappingProduct ; rdfs:label "ChEMBL to MeSH Mapping (CSV)" ; dcterms:description "Mapping file linking ChEMBL identifiers to MeSH identifiers" ; schema1:url . kgr:tera.cid-to-mesh-csv a schema1:MappingProduct ; rdfs:label "PubChem CID to MeSH Mapping (CSV)" ; dcterms:description "Mapping file linking PubChem compound identifiers (CID) to MeSH identifiers" ; schema1:url . kgr:tera.documentation a schema1:DocumentationProduct ; rdfs:label "TERA Documentation" ; dcterms:description "API documentation for the TERA knowledge graph package" ; schema1:url . kgr:tera.ecotox-chemical-nt a schema1:Product ; rdfs:label "ECOTOX Chemical Data (N-Triples)" ; dcterms:description "Chemical data from EPA ECOTOX in N-Triples RDF format" ; schema1:url . kgr:tera.ecotox-taxonomy-nt a schema1:Product ; rdfs:label "ECOTOX Taxonomy Data (N-Triples)" ; dcterms:description "Taxonomy data from EPA ECOTOX in N-Triples RDF format" ; schema1:url . kgr:tera.effects-nt a schema1:Product ; rdfs:label "Effects Data (N-Triples)" ; dcterms:description "Chemical effects data in N-Triples RDF format" ; schema1:url . kgr:tera.mesh-nt a schema1:Product ; rdfs:label "MeSH Data (N-Triples)" ; dcterms:description "MeSH (Medical Subject Headings) data in N-Triples RDF format" ; schema1:url . kgr:tera.ncbi-nt a schema1:Product ; rdfs:label "NCBI Taxonomy Data (N-Triples)" ; dcterms:description "NCBI Taxonomy data in N-Triples RDF format" ; schema1:url . kgr:tera.ncbi-to-eol-csv a schema1:MappingProduct ; rdfs:label "NCBI to EOL Mapping (CSV)" ; dcterms:description "Mapping file linking NCBI Taxonomy identifiers to Encyclopedia of Life identifiers" ; schema1:url . kgr:tera.python-package a schema1:ProgrammingInterface ; rdfs:label "TERA Python Package" ; dcterms:description "Python package providing APIs for data aggregation, integration, and access of TERA knowledge graph" . kgr:tera.zenodo-dataset a schema1:Product ; rdfs:label "TERA Knowledge Graph Dataset (Zenodo)" ; dcterms:description "TERA knowledge graph dataset snapshot version 1.1.0 hosted on Zenodo, including NT files and CSV mappings" ; schema1:url . kgr:tfacts.publication a schema1:DocumentationProduct ; rdfs:label "TFactS publication (Nucleic Acids Research, 2010)" ; dcterms:description "Peer-reviewed publication describing the TFactS method and the curated catalogue of signed transcription factor to target gene interactions. The original tfacts.org web server is defunct, so the paper serves as the authoritative reference for the resource." ; schema1:url . kgr:tgma.kg-bioportal a schema1:GraphProduct ; rdfs:label "TGMA KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Mosquito Gross Anatomy Ontology (TGMA), produced by KG-Bioportal from the BioPortal submission. The archive contains TGMA_nodes.tsv and TGMA_edges.tsv." ; schema1:url . kgr:tgma.obo a schema1:OntologyProduct ; rdfs:label "tgma.obo" ; dcterms:description "Mosquito gross anatomy ontology in OBO format" ; schema1:url . kgr:tgma.owl a schema1:OntologyProduct ; rdfs:label "tgma.owl" ; dcterms:description "Mosquito gross anatomy ontology in OWL format" ; schema1:url . kgr:tiga.downloads a schema1:Product ; rdfs:label "TIGA Downloads" ; dcterms:description "Download directory for TIGA data exports and releases." ; schema1:url . kgr:tiga.portal a schema1:GraphicalInterface ; rdfs:label "TIGA Web Application" ; dcterms:description "Web application for exploring TIGA evidence-ranked gene-trait associations." ; schema1:url . kgr:tissues.downloads a schema1:Product ; rdfs:label "TISSUES Data Downloads" ; dcterms:description "Downloadable datasets of tissue expression evidence including integrated scores and source-specific data" ; schema1:url . kgr:tissues.search a schema1:GraphicalInterface ; rdfs:label "TISSUES Search" ; dcterms:description "Search interface for querying genes, proteins, and tissues" ; schema1:url . kgr:tissues.web a schema1:GraphicalInterface ; rdfs:label "TISSUES Web Interface" ; dcterms:description "Web interface for searching and visualizing tissue expression data with schematic human body visualization" ; schema1:url . kgr:tmrnawebsite.alignments a schema1:Product ; rdfs:label "tmRNA and SmpB Alignments" ; dcterms:description "Multiple sequence alignments for 632 tmRNA and 2,258 distinct SmpB sequences" ; schema1:url . kgr:tmrnawebsite.blast a schema1:Product ; rdfs:label "tmRNA Website BLAST" ; dcterms:description "BLAST search interface for tmRNA and SmpB sequence similarity searches" ; schema1:url . kgr:tmrnawebsite.krona-viewer a schema1:Product ; rdfs:label "tmRNA Krona Phylogenetic Viewer" ; dcterms:description "Krona-based interactive phylogenetic visualization tool for 9,387 tmRNA instances" ; schema1:url . kgr:tmrnawebsite.portal a schema1:GraphicalInterface ; rdfs:label "tmRNA Website Portal" ; dcterms:description "Main web portal for searching and browsing tmRNA and SmpB sequences with phylogenetic navigation" ; schema1:url . kgr:tmrnawebsite.software a schema1:Product ; rdfs:label "tmRNA Identification Software" ; dcterms:description "Software tools (tFind.pl, rFind.pl) for identifying tmRNA genes in genomic sequences" ; schema1:url . kgr:to.kg-bioportal a schema1:GraphProduct ; rdfs:label "PTO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Plant Trait Ontology (PTO), produced by KG-Bioportal from the BioPortal submission. The archive contains PTO_nodes.tsv and PTO_edges.tsv." ; schema1:url . kgr:to.obo a schema1:OntologyProduct ; rdfs:label "to.obo" ; dcterms:description "Plant Trait Ontology in OBO format" ; schema1:url . kgr:to.owl a schema1:OntologyProduct ; rdfs:label "to.owl" ; dcterms:description "Plant Trait Ontology in OWL format" ; schema1:url . kgr:togows.convert a schema1:ProgrammingInterface ; rdfs:label "TogoWS Format Conversion" ; dcterms:description "REST service (HTTP POST) for converting between sequence, alignment and annotation formats such as GenBank, EMBL/ENA, DDBJ, FASTA, GFF and BLAST or HMMER output, and RDF serializations." ; schema1:url . kgr:topmed.data-access a schema1:GraphicalInterface ; rdfs:label "TOPMed Data Access" ; dcterms:description "TOPMed data access page with instructions and links for controlled-access data workflows." ; schema1:url . kgr:topmed.portal a schema1:GraphicalInterface ; rdfs:label "TOPMed Portal" ; dcterms:description "TOPMed program website for navigating cohorts, resources, and program documentation." ; schema1:url . kgr:topmed.wgs-counts a schema1:DocumentationProduct ; rdfs:label "TOPMed WGS Counts PDF" ; dcterms:description "PDF summary table of whole-genome sequencing counts available in TOPMed." ; schema1:url . kgr:tox21.data a schema1:Product ; rdfs:label "Tox21 Data and Resources" ; dcterms:description "Tox21 data and resources, including quantitative high-throughput screening results for approximately 10,000 chemicals across nuclear-receptor and stress-response pathway assays, along with associated tools and documentation published by the Tox21 consortium." ; schema1:url . kgr:toxcast.api a schema1:ProgrammingInterface ; rdfs:label "EPA CTX (Computational Toxicology and Exposure) API (ToxCast Bioactivity)" ; dcterms:description "REST API providing programmatic access to ToxCast-related assay, chemical, and bioactivity data via the EPA Computational Toxicology and Exposure (CTX) APIs. The Bioactivity domain is backed by ToxCast's invitrodb. An API key (free, via ccte_api@epa.gov) is required for data calls." ; schema1:url . kgr:toxcast.downloads a schema1:Product ; rdfs:label "ToxCast Bulk Data Downloads" ; dcterms:description "Bulk release archives (assay annotations, hit-call data, summary tables) for ToxCast phases." ; schema1:url . kgr:toxcast.portal a schema1:GraphicalInterface ; rdfs:label "EPA ToxCast Portal" ; dcterms:description "Landing page describing the ToxCast high-throughput screening program and providing links to data and documentation." ; schema1:url . kgr:toxin.web a schema1:GraphicalInterface ; rdfs:label "TOXIN Search Portal" ; dcterms:description "Web portal for searching and exploring toxic compounds, targets, and pathway relationships in the TOXIN knowledge graph." ; schema1:url . kgr:trans.kg-bioportal a schema1:GraphProduct ; rdfs:label "PTRANS KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Pathogen Transmission Ontology (PTRANS), produced by KG-Bioportal from the BioPortal submission. The archive contains PTRANS_nodes.tsv and PTRANS_edges.tsv." ; schema1:url . kgr:trans.obo a schema1:OntologyProduct ; rdfs:label "trans.obo" ; dcterms:description "Pathogen Transmission Ontology in OBO format" ; schema1:url . kgr:trans.owl a schema1:OntologyProduct ; rdfs:label "trans.owl" ; dcterms:description "Pathogen Transmission Ontology in OWL format" ; schema1:url . kgr:translator-program a "Organization" ; rdfs:label "NCATS Biomedical Translator Program" . kgr:treatkb.goldstandard a schema1:Product ; rdfs:label "TreatKB gold-standard treatment pairs" ; dcterms:description "Curated gold-standard set of drug-disease treatment pairs distributed as a plain-text file, the core reference data of TreatKB. Companion files at the same location hold treatment-pair evidence counts derived from MEDLINE, FAERS, and ClinicalTrials.gov." ; schema1:url . kgr:treatkb.publication a schema1:DocumentationProduct ; rdfs:label "TreatKB Method Publication" ; dcterms:description "Peer-reviewed publication from the Xu lab describing the large-scale text-mining method used to extract accurate drug-disease treatment pairs from biomedical literature, the approach underlying TreatKB." ; schema1:url . kgr:tred.docs a schema1:DocumentationProduct ; rdfs:label "TRED Publication" ; dcterms:description "Reference publication describing TRED's curated transcription factor binding sites, TF-promoter regulatory interactions, and promoter annotations. The original web database is no longer available, so the publication serves as the primary documentation of record." ; schema1:url . kgr:treefam.downloads a schema1:Product ; rdfs:label "TreeFam Downloads" ; dcterms:description "Bulk downloads of gene trees, alignments, and family annotations." ; schema1:url . kgr:treefam.site a schema1:GraphicalInterface ; rdfs:label "TreeFam Website" ; dcterms:description "Web interface for browsing and searching gene families and their phylogenetic trees." ; schema1:url . kgr:trrust.human.tsv a schema1:Product ; rdfs:label "TRRUST Human Interactions (TSV)" ; dcterms:description "TRRUST v2 human transcription factor-target regulatory interactions in tab-separated format, with TF, target gene, mode of regulation, and supporting PubMed identifiers." ; schema1:url . kgr:trrust.mouse.tsv a schema1:Product ; rdfs:label "TRRUST Mouse Interactions (TSV)" ; dcterms:description "TRRUST v2 mouse transcription factor-target regulatory interactions in tab-separated format, with TF, target gene, mode of regulation, and supporting PubMed identifiers." ; schema1:url . kgr:trrust.web a schema1:Product ; rdfs:label "TRRUST Web Resource" ; dcterms:description "TRRUST web resource for browsing and searching manually curated human and mouse transcription factor-target regulatory interactions." ; schema1:url . kgr:try.portal a schema1:Product ; rdfs:label "TRY Data Portal" ; dcterms:description "Trait data available through the TRY data portal (access upon request/registration)" ; schema1:url . kgr:ttd.crossmatch a schema1:Product ; rdfs:label "Cross-matching Drug IDs" ; dcterms:description "Cross-matching identifiers between TTD drugs and public databases" ; schema1:url . kgr:ttd.drug-combinations a schema1:Product ; rdfs:label "Drug Combinations" ; dcterms:description "Drug combination data including synergistic, additive, and antagonistic interactions" ; schema1:url . kgr:ttd.drugs-raw a schema1:Product ; rdfs:label "TTD Drug Information" ; dcterms:description "Raw format drug information including all TTD drug data" ; schema1:url . kgr:ttd.help a schema1:DocumentationProduct ; rdfs:label "TTD Help Documentation" ; dcterms:description "Help documentation and user guide for TTD" ; schema1:url . kgr:ttd.portal a schema1:GraphicalInterface ; rdfs:label "TTD Web Portal" ; dcterms:description "Main web portal for browsing and searching TTD targets, drugs, biomarkers, and pathways" ; schema1:url . kgr:ttd.sequences-all a schema1:Product ; rdfs:label "All Target Sequences" ; dcterms:description "Sequence data for all targets in FASTA format" ; schema1:url . kgr:ttd.smiles-inchi a schema1:Product ; rdfs:label "Drug SMILES and InChI" ; dcterms:description "SMILES and InChI representations for approved drugs" ; schema1:url . kgr:ttd.structures-all a schema1:Product ; rdfs:label "All Drug Structures" ; dcterms:description "Structure data for all drugs in SDF format" ; schema1:url . kgr:ttd.synonyms a schema1:Product ; rdfs:label "Drug Synonyms" ; dcterms:description "Synonyms of drugs and small molecules in TTD" ; schema1:url . kgr:tto.kg-bioportal a schema1:GraphProduct ; rdfs:label "TTO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Teleost Taxonomy Ontology (TTO), produced by KG-Bioportal from the BioPortal submission. The archive contains TTO_nodes.tsv and TTO_edges.tsv." ; schema1:url . kgr:tto.obo a schema1:OntologyProduct ; rdfs:label "tto.obo" ; dcterms:description "Teleost taxonomy ontology in OBO format" ; schema1:url . kgr:tto.owl a schema1:OntologyProduct ; rdfs:label "tto.owl" ; dcterms:description "Teleost taxonomy ontology in OWL format" ; schema1:url . kgr:txpo.kg-bioportal a schema1:GraphProduct ; rdfs:label "TXPO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Toxic Process Ontology (TXPO), produced by KG-Bioportal from the BioPortal submission. The archive contains TXPO_nodes.tsv and TXPO_edges.tsv." ; schema1:url . kgr:txpo.owl a schema1:OntologyProduct ; rdfs:label "txpo.owl" ; dcterms:description "Toxic Process Ontology in OWL format" ; schema1:url . kgr:ubergraph.blazegraph.jnl a schema1:Product ; rdfs:label "Ubergraph blazegraph journal" ; dcterms:description "Blazegraph journal of Ubergraph" ; schema1:url . kgr:ubergraph.nquads a schema1:Product ; rdfs:label "Ubergraph n-quads" ; dcterms:description "Ubergraph n-quads" ; schema1:url . kgr:ubergraph.rdf a schema1:Product ; rdfs:label "Ubergraph RDF" ; dcterms:description "RDF of Ubergraph" ; schema1:url . kgr:ubergraph.sparql a schema1:ProgrammingInterface ; rdfs:label "Ubergraph SPARQL" ; dcterms:description "SPARQL endpoint for Ubergraph" ; schema1:url . kgr:ubergraph.tpf a schema1:ProgrammingInterface ; rdfs:label "Ubergraph TPF" ; dcterms:description "Triple Pattern Fragments endpoint for Ubergraph" ; schema1:url . kgr:uberon.collected-metazoan.owl a schema1:OntologyProduct ; rdfs:label "Uberon collected metazoan ontology" ; dcterms:description "Uberon plus all metazoan ontologies" ; schema1:url . kgr:uberon.composite-metazoan.owl a schema1:OntologyProduct ; rdfs:label "Uberon composite metazoan ontology" ; dcterms:description "Uberon and all metazoan ontologies with redundant species-specific terms removed" ; schema1:url . kgr:uberon.composite-vertebrate.owl a schema1:OntologyProduct ; rdfs:label "Uberon composite vertebrate ontology" ; dcterms:description "Uberon composite vertebrate ontology" ; schema1:url . kgr:uberon.kg-bioportal a schema1:GraphProduct ; rdfs:label "UBERON KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Uber Anatomy Ontology (UBERON), produced by KG-Bioportal from the BioPortal submission. The archive contains UBERON_nodes.tsv and UBERON_edges.tsv." ; schema1:url . kgr:uberon.owl a schema1:OntologyProduct ; rdfs:label "Uberon" ; dcterms:description "core ontology" ; schema1:url . kgr:uberon.uberon-base.owl a schema1:OntologyProduct ; rdfs:label "Uberon base ontology" ; dcterms:description "Axioms defined within Uberon and to be used in imports for other ontologies" ; schema1:url . kgr:uberon.uberon-basic.obo a schema1:OntologyProduct ; rdfs:label "Uberon basic" ; dcterms:description "Uberon edition that excludes external ontologies and most relations" ; schema1:url . kgr:ucnebase.site a schema1:GraphicalInterface ; rdfs:label "UCNEbase Website" ; dcterms:description "Web interface for browsing ultraconserved non-coding elements and genomic regulatory blocks." ; schema1:url . kgr:ucsb-geography a "Organization" ; rdfs:label "University of California, Santa Barbara - Department of Geography" . kgr:ucsc.api a schema1:ProgrammingInterface ; rdfs:label "UCSC Genome Browser REST API" ; dcterms:description "REST API for programmatic access to genome assemblies and annotation tracks." ; schema1:url . kgr:ucsc.browser a schema1:GraphicalInterface ; rdfs:label "UCSC Genome Browser" ; dcterms:description "Interactive web browser for viewing reference genomes and annotation tracks." ; schema1:url . kgr:ucsc.downloads a schema1:Product ; rdfs:label "UCSC Genome Browser Downloads" ; dcterms:description "Bulk downloads of genome assemblies and annotation tracks." ; schema1:url . kgr:ucsc.tablebrowser a schema1:GraphicalInterface ; rdfs:label "UCSC Table Browser" ; dcterms:description "Tool for extracting and downloading subsets of annotation track data." ; schema1:url . kgr:uf-okn.code a schema1:ProcessProduct ; rdfs:label "UF-OKN Source Code" ; dcterms:description "Source repository for UF-OKN knowledge graph construction and maintenance." ; schema1:url . kgr:uf-okn.portal a schema1:GraphicalInterface ; rdfs:label "UF-OKN Portal" ; dcterms:description "Public UF-OKN web portal for project information and application context." ; schema1:url . kgr:uf-okn.sparql a schema1:ProgrammingInterface ; rdfs:label "UF-OKN SPARQL" ; dcterms:description "SPARQL endpoint for UF-OKN" ; schema1:url . kgr:uf-okn.tpf a schema1:ProgrammingInterface ; rdfs:label "UF-OKN TPF" ; dcterms:description "Triple Pattern Fragments endpoint for UF-OKN" ; schema1:url . kgr:ukbiobank.showcase a schema1:GraphicalInterface ; rdfs:label "UK Biobank Data Showcase" ; dcterms:description "The UK Biobank Data Showcase provides summary statistics of all UK Biobank data and allows researchers to identify variables for inclusion in research applications." ; schema1:url . kgr:umls.api a schema1:ProgrammingInterface ; rdfs:label "UMLS Terminology Services API" ; dcterms:description "REST API providing programmatic access to UMLS Metathesaurus, Semantic Network, and related terminology services" ; schema1:url . kgr:umls.browser a schema1:GraphicalInterface ; rdfs:label "UMLS Metathesaurus Browser" ; dcterms:description "Web interface for browsing UMLS Metathesaurus concepts, CUIs, semantic types, and synonymous terms" ; schema1:url . kgr:umls.metamorphosys a schema1:ProcessProduct ; rdfs:label "MetamorphoSys Customization Tool" ; dcterms:description "MetamorphoSys tool for customizing UMLS subsets by vocabulary, language, or semantic type and loading data into local databases" ; schema1:url . kgr:umls.release a schema1:Product ; rdfs:label "UMLS Knowledge Sources Release Files" ; dcterms:description "Full UMLS Knowledge Sources release including Metathesaurus, Semantic Network, and SPECIALIST Lexicon for local installation with MetamorphoSys customization tool" ; schema1:url . kgr:umls.semantic_network_browser a schema1:GraphicalInterface ; rdfs:label "UMLS Semantic Network Browser" ; dcterms:description "Web interface for viewing semantic types, definitions, and hierarchical structure of the UMLS Semantic Network" ; schema1:url . kgr:umls.specialist_lexicon a schema1:ProcessProduct ; rdfs:label "SPECIALIST Lexicon and Lexical Tools" ; dcterms:description "SPECIALIST Lexicon and Lexical Tools for normalizing strings, generating lexical variants, and creating indexes for biomedical text processing" ; schema1:url . kgr:unibiomap.code a schema1:ProcessProduct ; rdfs:label "UniBioMap Code" ; dcterms:description "Source code and pipelines used to build the UniBioMap knowledge graph." ; schema1:url . kgr:unibiomap.web a schema1:GraphicalInterface ; rdfs:label "UniBioMap Website" ; dcterms:description "Web interface for browsing UniBioMap resources and documentation." ; schema1:url . kgr:unicarbkb.article a schema1:DocumentationProduct ; rdfs:label "UniCarbKB Knowledge Platform Article" ; dcterms:description "Nucleic Acids Research article describing UniCarbKB as a curated knowledge platform for glycoproteomics and glycomics research." ; schema1:url . kgr:unicarbkb.portal a schema1:GraphicalInterface ; rdfs:label "UniCarbKB Web Portal" ; dcterms:description "UniCarbKB web portal for browsing curated glycoprotein glycan structures, biological source information, experimental methods, literature references, and linked protein records." ; schema1:url . kgr:unichem.api a schema1:ProgrammingInterface ; rdfs:label "UniChem REST API" ; dcterms:description "RESTful web services API for programmatic access to UniChem cross-references and connectivity searches" ; schema1:url . kgr:unichem.docs a schema1:DocumentationProduct ; rdfs:label "UniChem Documentation" ; dcterms:description "Complete documentation covering UniChem functionality, API usage, data model, and integration guidelines" ; schema1:url . kgr:unichem.docs.uci a schema1:DocumentationProduct ; rdfs:label "UCI Documentation Entry Point" ; dcterms:description "UniChem compound sources page illustrating the UCI identifier namespace." ; schema1:url . kgr:unichem.search a schema1:GraphicalInterface ; rdfs:label "UniChem Search Interface" ; dcterms:description "Web-based search interface for finding compound sources and performing connectivity searches across chemical databases" ; schema1:url . kgr:unichem.sources a schema1:Product ; rdfs:label "UniChem Source Database List" ; dcterms:description "Comprehensive list of all integrated chemistry databases and their metadata in UniChem" ; schema1:url . kgr:unii.data a schema1:Product ; rdfs:label "UNII Data Download" ; dcterms:description "Comprehensive UNII data with detailed substance attributes and mappings" ; schema1:url . kgr:unii.legacy a schema1:Product ; rdfs:label "Legacy UNIIs" ; dcterms:description "Legacy UNII identifiers for historical substances" ; schema1:url . kgr:unii.list a schema1:Product ; rdfs:label "UNII List Download" ; dcterms:description "Downloadable list of all UNIIs with basic substance information" ; schema1:url . kgr:unii.search a schema1:GraphicalInterface ; rdfs:label "UNII Search Service" ; dcterms:description "Web-based search interface for finding substances by UNII, name, or other identifiers" ; schema1:url . kgr:uniprot.kg-bioportal a schema1:GraphProduct ; rdfs:label "UNIPROT KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Uniprot Core Ontology (UNIPROT), produced by KG-Bioportal from the BioPortal submission. The archive contains UNIPROT_nodes.tsv and UNIPROT_edges.tsv." ; schema1:url . kgr:uniprot.swissprot.fasta a schema1:Product ; rdfs:label "Reviewed (Swiss-Prot) FASTA" ; dcterms:description "The Reviewed (Swiss-Prot) section of UniProt proteins" ; schema1:url . kgr:uniprot.swissprot.xml a schema1:Product ; rdfs:label "Reviewed (Swiss-Prot) XML" ; dcterms:description "The Reviewed (Swiss-Prot) section of UniProt proteins" ; schema1:url . kgr:uniprot.trembl.fasta a schema1:Product ; rdfs:label "Unreviewed (TrEMBL) FASTA" ; dcterms:description "The Unreviewed (TrEMBL) section of UniProt proteins" ; schema1:url . kgr:uniprot.trembl.xml a schema1:Product ; rdfs:label "Unreviewed (TrEMBL) XML" ; dcterms:description "The Unreviewed (TrEMBL) section of UniProt proteins" ; schema1:url . kgr:uniref.api a schema1:ProgrammingInterface ; rdfs:label "UniRef REST API" ; dcterms:description "RESTful API for programmatic access to UniRef cluster data supporting queries, downloads, and integration with bioinformatics workflows" ; schema1:url . kgr:uniref.portal a schema1:GraphicalInterface ; rdfs:label "UniRef Web Portal" ; dcterms:description "Web interface for searching, browsing, and analyzing UniRef cluster information with advanced search capabilities and visualization tools" ; schema1:url . kgr:uniref.uniref100.fasta a schema1:Product ; rdfs:label "UniRef100 FASTA" ; dcterms:description "UniRef100 database combining identical protein sequences and sub-fragments with 11-residue overlap into single representative entries, providing complete sequence coverage with 100% identity clustering" ; schema1:url . kgr:uniref.uniref100.xml a schema1:Product ; rdfs:label "UniRef100 XML" ; dcterms:description "UniRef100 database in XML format with comprehensive metadata including cluster membership, representative sequences, taxonomy, and cross-references" ; schema1:url . kgr:uniref.uniref50.fasta a schema1:Product ; rdfs:label "UniRef50 FASTA" ; dcterms:description "UniRef50 database clustering sequences with at least 50% sequence identity and 80% overlap, providing fast sequence searches with broad coverage of protein sequence space" ; schema1:url . kgr:uniref.uniref50.xml a schema1:Product ; rdfs:label "UniRef50 XML" ; dcterms:description "UniRef50 database in XML format with detailed cluster annotations and relationships" ; schema1:url . kgr:uniref.uniref90.fasta a schema1:Product ; rdfs:label "UniRef90 FASTA" ; dcterms:description "UniRef90 database clustering sequences with at least 90% sequence identity and 80% overlap, balancing speed and sensitivity for sequence searches" ; schema1:url . kgr:uniref.uniref90.xml a schema1:Product ; rdfs:label "UniRef90 XML" ; dcterms:description "UniRef90 database in XML format with complete cluster information and annotations" ; schema1:url . kgr:univ-lorraine a "Organization" ; rdfs:label "Université de Lorraine" . kgr:university-of-california-san-diego a "Organization" ; rdfs:label "University of California San Diego" . kgr:university-of-manchester a "Organization" ; rdfs:label "miRBase (University of Manchester)" . kgr:uo.json a schema1:OntologyProduct ; rdfs:label "uo.json" ; dcterms:description "Units of measurement ontology in JSON format" ; schema1:url . kgr:uo.kg-bioportal a schema1:GraphProduct ; rdfs:label "UO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Units of Measurement Ontology (UO), produced by KG-Bioportal from the BioPortal submission. The archive contains UO_nodes.tsv and UO_edges.tsv." ; schema1:url . kgr:uo.obo a schema1:OntologyProduct ; rdfs:label "uo.obo" ; dcterms:description "Units of measurement ontology in OBO format" ; schema1:url . kgr:uo.owl a schema1:OntologyProduct ; rdfs:label "uo.owl" ; dcterms:description "Units of measurement ontology in OWL format" ; schema1:url . kgr:upa.kg-bioportal a schema1:GraphProduct ; rdfs:label "UPA KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Unipathway (UPA), produced by KG-Bioportal from the BioPortal submission. The archive contains UPA_nodes.tsv and UPA_edges.tsv." ; schema1:url . kgr:upa.obo a schema1:OntologyProduct ; rdfs:label "upa.obo" ; dcterms:description "Unipathway in OBO format" ; schema1:url . kgr:upa.owl a schema1:OntologyProduct ; rdfs:label "upa.owl" ; dcterms:description "Unipathway in OWL format" ; schema1:url . kgr:upheno.mp-hp-view.owl a schema1:OntologyProduct ; rdfs:label "uPheno MP-HP equivalence axioms" ; dcterms:description "No longer actively maintained." ; schema1:url . kgr:upheno.owl a schema1:OntologyProduct ; rdfs:label "uPheno 1 (inactive)" ; dcterms:description "uPheno 1 is no longer actively maintained, please start using uPheno 2 (see below)." ; schema1:url . kgr:upheno.v2.upheno.owl a schema1:OntologyProduct ; rdfs:label "uPheno 2" ; dcterms:description "The new version of uPheno, along with species independent phenotypes and additional phenotype relations. The ontology is still in Beta status, but we recommend users to migrate their infrastructures to uPheno 2 as uPheno 1 is no longer actively maintained." ; schema1:url . kgr:us-census.api a schema1:ProgrammingInterface ; rdfs:label "Census Data API" ; dcterms:description "The Census Data API provides programmatic access to Census Bureau datasets, including the decennial Census, American Community Survey, and economic surveys, for developers building applications and data pipelines." ; schema1:url . kgr:us-census.data a schema1:GraphicalInterface ; rdfs:label "data.census.gov" ; dcterms:description "data.census.gov is the Census Bureau's primary web platform for searching, exploring, and downloading data from the decennial Census, American Community Survey, and other Census programs." ; schema1:url . kgr:usdm.data a schema1:Product ; rdfs:label "U.S. Drought Monitor GIS and Data" ; dcterms:description "GIS and data download portal providing USDM drought severity maps and tabular data for download." ; schema1:url . kgr:usdm.map a schema1:GraphicalInterface ; rdfs:label "U.S. Drought Monitor Current Map" ; dcterms:description "Interactive web portal presenting the current weekly U.S. Drought Monitor map and severity classifications." ; schema1:url . kgr:usgs-comcat.fdsnws a schema1:ProgrammingInterface ; rdfs:label "USGS FDSN Event Web Service" ; dcterms:description "FDSN-standard event web service providing programmatic query access to ComCat earthquake events, origins, and magnitudes in multiple formats" ; schema1:url . kgr:usgs-comcat.search a schema1:GraphicalInterface ; rdfs:label "USGS Earthquake Catalog Search" ; dcterms:description "Web interface for searching and downloading earthquake events from ComCat by time, location, magnitude, and other parameters" ; schema1:url . kgr:usgs-nhd.landing a schema1:GraphicalInterface ; rdfs:label "USGS National Hydrography Dataset landing page" ; dcterms:description "USGS landing page for the National Hydrography Dataset describing the surface water feature data and access options." ; schema1:url . kgr:usgs-nhd.nhdplus a schema1:GraphicalInterface ; rdfs:label "USGS NHDPlus High Resolution" ; dcterms:description "USGS landing page for NHDPlus High Resolution, providing value-added flow, network connectivity, and catchment attributes built on the NHD." ; schema1:url . kgr:usgs-nwis.landing a schema1:GraphicalInterface ; rdfs:label "USGS Water Data for the Nation (NWIS Web)" ; dcterms:description "USGS Water Data for the Nation web interface to the National Water Information System, providing access to streamgage monitoring locations, surface water, groundwater, and water quality data." ; schema1:url . kgr:usgs.data a schema1:GraphicalInterface ; rdfs:label "USGS Science Data Catalog" ; dcterms:description "USGS data catalog and products portal providing access to USGS-published scientific datasets across the biological, geological, hydrological, and geographic sciences." ; schema1:url . kgr:usgs.sciencebase a schema1:GraphicalInterface ; rdfs:label "USGS ScienceBase Catalog" ; dcterms:description "ScienceBase is the USGS data and information repository for cataloging, managing, and distributing scientific data and associated metadata." ; schema1:url . kgr:utoronto a "Organization" ; rdfs:label "University of Toronto" . kgr:vario.kg-bioportal a schema1:GraphProduct ; rdfs:label "VARIO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Variation Ontology (VARIO), produced by KG-Bioportal from the BioPortal submission. The archive contains VARIO_nodes.tsv and VARIO_edges.tsv." ; schema1:url . kgr:vario.obo a schema1:OntologyProduct ; rdfs:label "VariO in OBO format" ; dcterms:description "VariO in OBO format" ; schema1:url . kgr:vario.owl a schema1:OntologyProduct ; rdfs:label "VariO main release in OWL" ; dcterms:description "VariO main release in OWL" ; schema1:url . kgr:vbo.json a schema1:OntologyProduct ; rdfs:label "vbo.json" ; dcterms:description "Vertebrate Breed Ontology in JSON format" ; schema1:url . kgr:vbo.kg-bioportal a schema1:GraphProduct ; rdfs:label "VBO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Vertebrate Breed Ontology (VBO), produced by KG-Bioportal from the BioPortal submission. The archive contains VBO_nodes.tsv and VBO_edges.tsv." ; schema1:url . kgr:vbo.obo a schema1:OntologyProduct ; rdfs:label "vbo.obo" ; dcterms:description "Vertebrate Breed Ontology in OBO format" ; schema1:url . kgr:vbo.owl a schema1:OntologyProduct ; rdfs:label "vbo.owl" ; dcterms:description "Vertebrate Breed Ontology in OWL format" ; schema1:url . kgr:vbo.vbo-base.json a schema1:OntologyProduct ; rdfs:label "vbo.vbo-base.json" ; dcterms:description "Vertebrate Breed Ontology in JSON format" ; schema1:url . kgr:vbo.vbo-base.obo a schema1:OntologyProduct ; rdfs:label "vbo.vbo-base.obo" ; dcterms:description "Vertebrate Breed Ontology in OBO format" ; schema1:url . kgr:vbo.vbo-base.owl a schema1:OntologyProduct ; rdfs:label "vbo.vbo-base.owl" ; dcterms:description "Vertebrate Breed Ontology in OWL format" ; schema1:url . kgr:vccf.explorer a schema1:GraphicalInterface ; rdfs:label "VCCF Knowledge Graph Explorer" ; dcterms:description "Interactive HRA Knowledge Graph Explorer view of the Vasculature Common Coordinate Framework (VCCF), browsing vessels, their branching connections, associated cell types, and biomarkers." ; schema1:url . kgr:vdjserver.portal a schema1:GraphicalInterface ; rdfs:label "VDJServer Portal" ; dcterms:description "Cloud-based analysis portal and AIRR-compliant repository for searching, browsing, and downloading immune repertoire sequencing datasets." ; schema1:url . kgr:vectology.api a schema1:ProgrammingInterface ; rdfs:label "Vectology API" ; dcterms:description "Public API providing access to sentence embedding-based similarity endpoints and variable vector queries" ; schema1:url . kgr:vectology.docs a schema1:DocumentationProduct ; rdfs:label "Vectology Project Page" ; dcterms:description "Project information page including description, maintenance status, contacts, and publication reference" ; schema1:url . kgr:vhog.kg-bioportal a schema1:GraphProduct ; rdfs:label "VHOG KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Vertebrate Homologous Organ Group Ontology (VHOG), produced by KG-Bioportal from the BioPortal submission. The archive contains VHOG_nodes.tsv and VHOG_edges.tsv." ; schema1:url . kgr:vhog.owl a schema1:OntologyProduct ; rdfs:label "vhog.owl" ; dcterms:description "Vertebrate Homologous Ontology Group Ontology in OWL format" ; schema1:url . kgr:vista.data a schema1:Product ; rdfs:label "VISTA Enhancer Data" ; dcterms:description "Downloadable datasets of validated enhancer elements and their activity annotations." ; schema1:url . kgr:vista.site a schema1:GraphicalInterface ; rdfs:label "VISTA Enhancer Browser" ; dcterms:description "Web interface for browsing and searching experimentally validated tissue-specific enhancers." ; schema1:url . kgr:vliz a "Organization" ; rdfs:label "Flanders Marine Institute (VLIZ)" . kgr:vo.kg-bioportal a schema1:GraphProduct ; rdfs:label "VO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Vaccine Ontology (VO), produced by KG-Bioportal from the BioPortal submission. The archive contains VO_nodes.tsv and VO_edges.tsv." ; schema1:url . kgr:vo.owl a schema1:OntologyProduct ; rdfs:label "vo.owl" ; dcterms:description "Vaccine Ontology in OWL format" ; schema1:url . kgr:vsao.kg-bioportal a schema1:GraphProduct ; rdfs:label "VSAO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Vertebrate Skeletal Anatomy Ontology (VSAO), produced by KG-Bioportal from the BioPortal submission. The archive contains VSAO_nodes.tsv and VSAO_edges.tsv." ; schema1:url . kgr:vsao.owl a schema1:OntologyProduct ; rdfs:label "vsao.owl" ; dcterms:description "Vertebrate Skeletal Anatomy Ontology- in OWL format" ; schema1:url . kgr:vt.kg-bioportal a schema1:GraphProduct ; rdfs:label "VT KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Vertebrate Trait Ontology (VT), produced by KG-Bioportal from the BioPortal submission. The archive contains VT_nodes.tsv and VT_edges.tsv." ; schema1:url . kgr:vt.owl a schema1:OntologyProduct ; rdfs:label "vt.owl" ; dcterms:description "Vertebrate trait ontology in OWL format" ; schema1:url . kgr:vto.obo a schema1:OntologyProduct ; rdfs:label "vto.obo" ; dcterms:description "Vertebrate Taxonomy Ontology in OBO format" ; schema1:url . kgr:vto.owl a schema1:OntologyProduct ; rdfs:label "vto.owl" ; dcterms:description "Vertebrate Taxonomy Ontology in OWL format" ; schema1:url . kgr:water-quality-portal.landing a schema1:GraphicalInterface ; rdfs:label "Water Quality Portal landing page" ; dcterms:description "The Water Quality Portal web interface for discovering and downloading integrated water quality monitoring data from federal, state, tribal, and local organizations." ; schema1:url . kgr:water-quality-portal.webservices a schema1:ProgrammingInterface ; rdfs:label "Water Quality Portal Web Services" ; dcterms:description "The Water Quality Portal web services providing programmatic query access to stations, sampling activities, and characteristic results in standardized formats." ; schema1:url . kgr:wbbt.obo a schema1:OntologyProduct ; rdfs:label "wbbt.obo" ; dcterms:description "C. elegans Gross Anatomy Ontology in OBO format" ; schema1:url . kgr:wbbt.owl a schema1:OntologyProduct ; rdfs:label "wbbt.owl" ; dcterms:description "C. elegans Gross Anatomy Ontology in OWL format" ; schema1:url . kgr:wbls.obo a schema1:OntologyProduct ; rdfs:label "wbls.obo" ; dcterms:description "C. elegans development ontology in OBO format" ; schema1:url . kgr:wbls.owl a schema1:OntologyProduct ; rdfs:label "wbls.owl" ; dcterms:description "C. elegans development ontology in OWL format" ; schema1:url . kgr:wbphenotype.obo a schema1:OntologyProduct ; rdfs:label "wbphenotype.obo" ; dcterms:description "C. elegans phenotype in OBO format" ; schema1:url . kgr:wbphenotype.owl a schema1:OntologyProduct ; rdfs:label "wbphenotype.owl" ; dcterms:description "C. elegans phenotype in OWL format" ; schema1:url . kgr:wbphenotype.wbphenotype-base.owl a schema1:OntologyProduct ; rdfs:label "wbphenotype.wbphenotype-base.owl" ; dcterms:description "C. elegans phenotype in OWL format" ; schema1:url . kgr:web-of-science.core_collection_docs a schema1:DocumentationProduct ; rdfs:label "Web of Science Core Collection Documentation" ; dcterms:description "Clarivate documentation for Web of Science Core Collection content, indexes, records, and search features." ; schema1:url . kgr:web-of-science.platform a schema1:GraphicalInterface ; rdfs:label "Web of Science Platform" ; dcterms:description "Web of Science research discovery and citation-index platform." ; schema1:url . kgr:wellcome-sanger-institute a "Organization" ; rdfs:label "Wellcome Sanger Institute" . kgr:who a schema1:Aggregator, "Organization" ; rdfs:label "WHO Family of International Classifications", "World Health Organization" ; dcterms:created "2026-06-02T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The World Health Organization (WHO) is a United Nations specialized agency for international public health that publishes global health statistics, classifications, guidance, disease outbreak reports, and emergency information products." ; dcterms:identifier "who" ; dcterms:modified "2026-06-03T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:ekg.browser, kgr:ekg.csv, kgr:ekg.rdf, kgr:ekg.sparql, kgr:ekg.ttl, kgr:who.data-platform, kgr:who.disease-outbreak-news, kgr:who.disease-outbreak-news-api, kgr:who.gho, kgr:who.gho-odata-api, kgr:who.portal ; schema1:name "World Health Organization" ; skos:altLabel "WHO" ; skos:inScheme "biomedical", "clinical", "public health" ; adms:status "Active" ; foaf:homepage . kgr:who-ictrp.data-providers a schema1:DocumentationProduct ; rdfs:label "ICTRP Data Providers List" ; dcterms:description "List of the data providers that supply trial records to the ICTRP Search Portal, including the primary registries and ClinicalTrials.gov." ; schema1:url . kgr:who-ictrp.docs a schema1:DocumentationProduct ; rdfs:label "ICTRP Website" ; dcterms:description "WHO ICTRP website describing the platform, the registry network, the search portal and its services, trial registration standards, and the Universal Trial Number." ; schema1:url . kgr:who-ictrp.primary-registries a schema1:DocumentationProduct ; rdfs:label "WHO Primary Registries List" ; dcterms:description "List of the primary registries in the WHO Registry Network that meet WHO criteria for content, quality, accessibility, unique identification, technical capacity and administration, with registry profiles and website links." ; schema1:url . kgr:who-ictrp.who-data-set a schema1:DocumentationProduct ; rdfs:label "WHO Trial Registration Data Set" ; dcterms:description "Documentation of the WHO Trial Registration Data Set, the minimum set of items a trial record must contain to be included in the ICTRP, with archived earlier versions." ; schema1:url . kgr:who.data-platform a schema1:GraphicalInterface ; rdfs:label "WHO Data Platform" ; dcterms:description "WHO Data Platform landing page linking WHO data portals including the Global Health Observatory, immunization data, GLAAS, NCD data, SRHR policy data, and other health data sites." ; schema1:url . kgr:who.disease-outbreak-news a schema1:GraphicalInterface ; rdfs:label "WHO Disease Outbreak News" ; dcterms:description "WHO Disease Outbreak News page providing reports on confirmed and potential acute public health events of concern across hazards." ; schema1:url . kgr:who.disease-outbreak-news-api a schema1:ProgrammingInterface ; rdfs:label "WHO Disease Outbreak News API" ; dcterms:description "WHO Sitefinity REST API endpoint for Disease Outbreak News items, exposing DON identifiers, titles, dates, overview, assessment, advice, and related metadata as JSON." ; schema1:url . kgr:who.gho a schema1:GraphicalInterface ; rdfs:label "WHO Global Health Observatory" ; dcterms:description "WHO Global Health Observatory portal for browsing global health data by indicators, countries, themes, featured datasets, dashboards, and publications." ; schema1:url . kgr:who.gho-odata-api a schema1:ProgrammingInterface ; rdfs:label "WHO GHO OData API" ; dcterms:description "WHO Global Health Observatory OData API for querying WHO statistics and indicator data through the OData protocol." ; schema1:url . kgr:who.portal a schema1:GraphicalInterface ; rdfs:label "WHO Web Portal" ; dcterms:description "WHO public website for global health information, public health guidance, emergencies, publications, campaigns, news, and country information." ; schema1:url . kgr:wikidata.api a schema1:ProgrammingInterface ; rdfs:label "Wikidata Action API" ; dcterms:description "RESTful API providing programmatic access to Wikidata content, allowing reading and editing of items, properties, and statements" ; schema1:url . kgr:wikidata.dumps.incremental a schema1:Product ; rdfs:label "Wikidata Incremental Dumps" ; dcterms:description "Incremental add/change dumps that cover the previous 24 hours" ; schema1:url . kgr:wikidata.dumps.json a schema1:Product ; rdfs:label "Wikidata JSON Entity Dumps" ; dcterms:description "JSON dumps containing all Wikidata entities" ; schema1:url . kgr:wikidata.dumps.lexemes.json a schema1:Product ; rdfs:label "Wikidata Lexeme JSON Dump" ; dcterms:description "Lexeme namespace JSON dump" ; schema1:url . kgr:wikidata.dumps.lexemes.nt a schema1:Product ; rdfs:label "Wikidata Lexeme RDF Dump (N-Triples)" ; dcterms:description "Lexeme namespace RDF dump in N-Triples format" ; schema1:url . kgr:wikidata.dumps.lexemes.ttl a schema1:Product ; rdfs:label "Wikidata Lexeme RDF Dump (Turtle)" ; dcterms:description "Lexeme namespace RDF dump in Turtle format" ; schema1:url . kgr:wikidata.dumps.rdf.full.nt a schema1:Product ; rdfs:label "Wikidata RDF Full Dump (N-Triples)" ; dcterms:description "Canonical full-statement RDF dump in N-Triples format (the \"all\" dump)" ; schema1:url . kgr:wikidata.dumps.rdf.full.ttl a schema1:Product ; rdfs:label "Wikidata RDF Full Dump (Turtle)" ; dcterms:description "Canonical full-statement RDF dump in Turtle format (the \"all\" dump)" ; schema1:url . kgr:wikidata.dumps.rdf.truthy.nt a schema1:Product ; rdfs:label "Wikidata RDF Truthy Dump (N-Triples)" ; dcterms:description "RDF \"truthy\" dump in N-Triples format containing direct values from best-rank statements only" ; schema1:url . kgr:wikidata.dumps.xml a schema1:Product ; rdfs:label "Wikidata XML Dumps" ; dcterms:description "Full XML database dumps of Wikidata" ; schema1:url . kgr:wikidata.entity.api a schema1:ProgrammingInterface ; rdfs:label "Wikidata Entity Data API" ; dcterms:description "REST API for accessing entity data in JSON format with content negotiation support" ; schema1:url . kgr:wikidata.portal a schema1:GraphicalInterface ; rdfs:label "Wikidata Web Portal" ; dcterms:description "Main web interface for browsing, searching, and editing Wikidata items, properties, and statements with over 119 million data items" ; schema1:url . kgr:wikidata.query.editor a schema1:GraphicalInterface ; rdfs:label "Wikidata Query Service Interface" ; dcterms:description "Interactive web-based SPARQL query editor with example queries, visualization tools, and query assistance for exploring Wikidata" ; schema1:url . kgr:wikidata.sparql a schema1:ProgrammingInterface ; rdfs:label "Wikidata SPARQL" ; dcterms:description "SPARQL endpoint for Wikidata" ; schema1:url . kgr:wikidata.tpf a schema1:ProgrammingInterface ; rdfs:label "Wikidata TPF" ; dcterms:description "Triple Pattern Fragments endpoint for Wikidata" ; schema1:url . kgr:wikipathways.gmt a schema1:Product ; rdfs:label "WikiPathways GMT" ; dcterms:description "Pathways in Gene Matrix Transposed (GMT) format for Gene Set Enrichment Analysis" ; schema1:url . kgr:wikipathways.gpml a schema1:Product ; rdfs:label "WikiPathways GPML" ; dcterms:description "Pathways in Graphical Pathway Markup Language (GPML) format, which is a custom XML format for biological pathways" ; schema1:url . kgr:wikipathways.kg-bioportal a schema1:GraphProduct ; rdfs:label "WIKIPATHWAYS KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of WikiPathways (WIKIPATHWAYS), produced by KG-Bioportal from the BioPortal submission. The archive contains WIKIPATHWAYS_nodes.tsv and WIKIPATHWAYS_edges.tsv." ; schema1:url . kgr:wikipathways.rdf a schema1:Product ; rdfs:label "WikiPathways RDF" ; dcterms:description "Pathways in RDF (Resource Description Framework) format" ; schema1:url . kgr:wikipathways.sparql a schema1:ProgrammingInterface ; rdfs:label "WikiPathways SPARQL Endpoint" ; dcterms:description "SPARQL endpoint for querying WikiPathways content" ; schema1:url . kgr:wikipathways.web a schema1:GraphicalInterface ; rdfs:label "WikiPathways Web Interface" ; dcterms:description "The main web interface for browsing, viewing, and downloading pathways" ; schema1:url . kgr:wikipedia.api a schema1:ProgrammingInterface ; rdfs:label "Wikipedia MediaWiki Action API" ; dcterms:description "Public MediaWiki Action API for querying and editing Wikipedia content. The exact modules vary by wiki; this entry uses the English Wikipedia endpoint as a canonical example." ; schema1:url . kgr:wikipedia.dumps.enwiki.current a schema1:Product ; rdfs:label "English Wikipedia Current Content XML Dumps" ; dcterms:description "English Wikipedia current-content XML export directory from the Wikimedia dump service. This dump contains the latest revision of each exported page, split across multiple `.xml.bz2` files." ; schema1:url . kgr:wikipedia.dumps.enwiki.history a schema1:Product ; rdfs:label "English Wikipedia Full Revision History XML Dumps" ; dcterms:description "English Wikipedia full revision-history XML export directory from the Wikimedia dump service. This dump contains complete page revision histories, split across multiple `.xml.bz2` files." ; schema1:url . kgr:wikipedia.portal a schema1:GraphicalInterface ; rdfs:label "Wikipedia Web Portal" ; dcterms:description "Main Wikipedia web portal for browsing and searching article content across language editions." ; schema1:url . kgr:wikipedia.rest a schema1:ProgrammingInterface ; rdfs:label "Wikipedia Wikimedia REST API" ; dcterms:description "Public Wikimedia REST API for machine-readable Wikipedia content and metadata. This entry uses the English Wikipedia REST base path as a canonical example." ; schema1:url . kgr:wikispecies.api a schema1:ProgrammingInterface ; rdfs:label "Wikispecies MediaWiki Action API" ; dcterms:description "Public MediaWiki Action API endpoint for Wikispecies content." ; schema1:url . kgr:wikispecies.dumps.latest a schema1:Product ; rdfs:label "Wikispecies Latest XML Dumps" ; dcterms:description "Latest Wikispecies XML dump directory from Wikimedia Downloads." ; schema1:url . kgr:wikispecies.portal a schema1:GraphicalInterface ; rdfs:label "Wikispecies Web Portal" ; dcterms:description "Main Wikispecies web interface for browsing and editing taxonomic pages." ; schema1:url . kgr:wildlifekn.portal a schema1:GraphicalInterface ; rdfs:label "Wildlife-KN Portal" ; dcterms:description "Interactive Wildlife-KN portal for exploring wildlife observations by taxonomy, location, and time range with map and graph-based views." ; schema1:url . kgr:wildlifekn.sparql a schema1:ProgrammingInterface ; rdfs:label "Wildlife-KN SPARQL" ; dcterms:description "SPARQL endpoint for Wildlife-KN" ; schema1:url . kgr:wildlifekn.tpf a schema1:ProgrammingInterface ; rdfs:label "Wildlife-KN TPF" ; dcterms:description "Triple Pattern Fragments endpoint for Wildlife-KN" ; schema1:url . kgr:wipo-tkp.portal a schema1:GraphicalInterface ; rdfs:label "WIPO Traditional Knowledge Portal" ; dcterms:description "WIPO Traditional Knowledge web portal providing access to TK resources, policy materials, and links to traditional knowledge databases relevant to traditional and herbal medicine." ; schema1:url . kgr:wishart-lab a "Organization" ; rdfs:label "Wishart Lab (University of Alberta)" . kgr:wordnet.dict-3.1 a schema1:Product ; rdfs:label "WordNet 3.1 Database Files" ; dcterms:description "WordNet 3.1 database files only (the dict directory), without the browser or library code." ; schema1:url . kgr:wordnet.download-page a schema1:DocumentationProduct ; rdfs:label "WordNet Download Page" ; dcterms:description "WordNet download page listing the current and older versions, standoff files and related downloads." ; schema1:url . kgr:wordnet.release-3.0 a schema1:Product ; rdfs:label "WordNet 3.0 Release" ; dcterms:description "WordNet 3.0 release for Unix-like systems, with the database files, the wn command-line browser, the C library and the manual pages." ; schema1:url . kgr:wordnet.search a schema1:GraphicalInterface ; rdfs:label "WordNet Search" ; dcterms:description "WordNet Search 3.1, the online browser for looking up words and their synsets and relations." ; schema1:url . kgr:worldclim.download a schema1:Product ; rdfs:label "WorldClim 2.1 Climate Data" ; dcterms:description "WorldClim version 2.1 global climate surfaces (historical monthly and bioclimatic variables) distributed as gridded raster data for use in ecological and environmental modeling." ; schema1:url . kgr:worldclim.portal a schema1:GraphicalInterface ; rdfs:label "WorldClim Website" ; dcterms:description "WorldClim project website providing documentation and access to global historical, bioclimatic, and future climate data layers." ; schema1:url . kgr:wormbase.api a schema1:ProgrammingInterface ; rdfs:label "WormBase REST API" ; dcterms:description "REST API providing programmatic access to WormBase data including genes, proteins, variations, and annotations" ; schema1:url . kgr:wormbase.ftp a schema1:Product ; rdfs:label "WormBase FTP Downloads" ; dcterms:description "Download site providing bulk genome assemblies, annotations, gene models, and other WormBase data files over HTTPS." ; schema1:url . kgr:wormbase.gbrowse a schema1:GraphicalInterface ; rdfs:label "WormBase GBrowse" ; dcterms:description "Genome browser for visualizing genes, transcripts, and genomic features in their chromosomal context" ; schema1:url . kgr:wormbase.parasite a schema1:GraphicalInterface ; rdfs:label "WormBase ParaSite" ; dcterms:description "Sub-portal hosting approximately 100 parasitic helminth genomes with annotations and comparative genomics tools" ; schema1:url . kgr:wormbase.portal a schema1:GraphicalInterface ; rdfs:label "WormBase Web Portal" ; dcterms:description "Primary web portal for browsing and searching nematode genomic and biological data" ; schema1:url . kgr:wormbase.textpresso a schema1:GraphicalInterface ; rdfs:label "Textpresso" ; dcterms:description "Full-text search tool for querying C. elegans and nematode literature with ontology term support" ; schema1:url . kgr:wormbase.wormmine a schema1:GraphicalInterface ; rdfs:label "WormMine" ; dcterms:description "WormMine InterMine instance for complex queries and bulk data retrieval across WormBase datasets" ; schema1:url . kgr:xao.kg-bioportal a schema1:GraphProduct ; rdfs:label "XAO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Xenopus Anatomy Ontology (XAO), produced by KG-Bioportal from the BioPortal submission. The archive contains XAO_nodes.tsv and XAO_edges.tsv." ; schema1:url . kgr:xao.obo a schema1:OntologyProduct ; rdfs:label "xao.obo" ; dcterms:description "Xenopus Anatomy Ontology in OBO format" ; schema1:url . kgr:xao.owl a schema1:OntologyProduct ; rdfs:label "xao.owl" ; dcterms:description "Xenopus Anatomy Ontology in OWL format" ; schema1:url . kgr:xco.kg-bioportal a schema1:GraphProduct ; rdfs:label "XCO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Experimental Conditions Ontology (XCO), produced by KG-Bioportal from the BioPortal submission. The archive contains XCO_nodes.tsv and XCO_edges.tsv." ; schema1:url . kgr:xco.obo a schema1:OntologyProduct ; rdfs:label "xco.obo" ; dcterms:description "Experimental condition ontology in OBO format" ; schema1:url . kgr:xco.owl a schema1:OntologyProduct ; rdfs:label "xco.owl" ; dcterms:description "Experimental condition ontology in OWL format" ; schema1:url . kgr:xenbase.apis a schema1:ProgrammingInterface ; rdfs:label "Xenbase APIs and Web Services" ; dcterms:description "REST APIs and web services for programmatic access to Xenbase data" ; schema1:url . kgr:xenbase.blast a schema1:Product ; rdfs:label "Xenbase BLAST Services" ; dcterms:description "BLAST search interface for Xenopus nucleotide and protein sequences" ; schema1:url . kgr:xenbase.expression-data a schema1:Product ; rdfs:label "Gene Expression Data" ; dcterms:description "Curated gene expression data including RNA-seq, in situ hybridization, and microarray data from GEO datasets" ; schema1:url . kgr:xenbase.ftp-downloads a schema1:Product ; rdfs:label "Xenbase Data Downloads" ; dcterms:description "FTP site providing access to Xenopus genome assemblies, gene models, sequences, BLAST databases, and curated data reports" ; schema1:url . kgr:xenbase.genomes a schema1:Product ; rdfs:label "Xenopus Genome Assemblies" ; dcterms:description "Complete genome assemblies and gene models for Xenopus laevis (v10.1) and Xenopus tropicalis (v10.0)" ; schema1:url . kgr:xenbase.jbrowse-laevis a schema1:GraphicalInterface ; rdfs:label "X. laevis JBrowse Genome Browser" ; dcterms:description "Genome browser for Xenopus laevis v10.1 with integrated genomic and expression data" ; schema1:url . kgr:xenbase.jbrowse-tropicalis a schema1:GraphicalInterface ; rdfs:label "X. tropicalis JBrowse Genome Browser" ; dcterms:description "Genome browser for Xenopus tropicalis v10.0 with integrated genomic and expression data" ; schema1:url . kgr:xenbase.phenotype-data a schema1:Product ; rdfs:label "Phenotype and Mutant Data" ; dcterms:description "Comprehensive phenotype and mutant data including disease models and morphant phenotypes" ; schema1:url . kgr:xenbase.web-portal a schema1:GraphicalInterface ; rdfs:label "Xenbase Web Portal" ; dcterms:description "Web-based interface for exploring Xenopus biological data including genome browsers, gene expression searches, anatomy atlases, and phenotype databases" ; schema1:url . kgr:xenbase.wiki a schema1:DocumentationProduct ; rdfs:label "Xenbase Community Wiki" ; dcterms:description "Community wiki with protocols, methods, and resources for Xenopus research" ; schema1:url . kgr:xlmod.kg-bioportal a schema1:GraphProduct ; rdfs:label "XLMOD KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of mass spectrometry cross-linking and derivatization reagents (XLMOD), produced by KG-Bioportal from the BioPortal submission. The archive contains XLMOD_nodes.tsv and XLMOD_edges.tsv." ; schema1:url . kgr:xlmod.obo a schema1:OntologyProduct ; rdfs:label "xlmod.obo" ; dcterms:description "HUPO-PSI cross-linking and derivatization reagents controlled vocabulary in OBO format" ; schema1:url . kgr:xlmod.owl a schema1:OntologyProduct ; rdfs:label "xlmod.owl" ; dcterms:description "HUPO-PSI cross-linking and derivatization reagents controlled vocabulary in OWL format" ; schema1:url . kgr:xpo.kg-bioportal a schema1:GraphProduct ; rdfs:label "XPO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Xenopus Phenotype Ontology (XPO), produced by KG-Bioportal from the BioPortal submission. The archive contains XPO_nodes.tsv and XPO_edges.tsv." ; schema1:url . kgr:xpo.obo a schema1:OntologyProduct ; rdfs:label "xpo.obo" ; dcterms:description "Xenopus Phenotype Ontology in OBO format" ; schema1:url . kgr:xpo.owl a schema1:OntologyProduct ; rdfs:label "xpo.owl" ; dcterms:description "Xenopus Phenotype Ontology in OWL format" ; schema1:url . kgr:yoda.approved-requests a schema1:GraphicalInterface ; rdfs:label "YODA Approved Data Requests" ; dcterms:description "Listing of approved data requests, with the research proposal, requestor, trials requested and status or publications for each project." ; schema1:url . kgr:yoda.data-release-procedures a schema1:DocumentationProduct ; rdfs:label "YODA Project Data Release Policies and Procedures" ; dcterms:description "YODA Project Data Release Policies and Procedures (January 2025 version), the governing document for data request submission, review and data release." ; schema1:url . kgr:yoda.data-use-agreement a schema1:DocumentationProduct ; rdfs:label "YODA Data Use Agreements" ; dcterms:description "Data use agreements for each Data Partner (Janssen Pharmaceuticals, Johnson & Johnson Medical Device and Kenvue Brands LLC), setting terms for data access, data use, reporting of safety findings, redistribution and dissemination of results." ; schema1:url . kgr:yoda.metrics a schema1:Product ; rdfs:label "YODA Project Metrics" ; dcterms:description "Metrics on YODA Project activity, including submitted requests to use Johnson & Johnson data, details of each data request, clinical trial inquiries, clinical study report summary requests and trials determined to be unavailable." ; schema1:url . kgr:yoda.portal a schema1:GraphicalInterface ; rdfs:label "YODA Project Portal" ; dcterms:description "The YODA Project web portal, with information on Data Partners, policies, the data request process, approved requests and resulting publications." ; schema1:url . kgr:yoda.request-process a schema1:DocumentationProduct ; rdfs:label "YODA Data Request Review Process" ; dcterms:description "Description of how data requests are reviewed, covering YODA Project review, Data Partner due diligence assessment, external review, data use agreement signature and data access, with expected timelines." ; schema1:url . kgr:zea.kg-bioportal a schema1:GraphProduct ; rdfs:label "ZEA KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Maize Gross Anatomy Ontology (ZEA), produced by KG-Bioportal from the BioPortal submission. The archive contains ZEA_nodes.tsv and ZEA_edges.tsv." ; schema1:url . kgr:zeco.json a schema1:OntologyProduct ; rdfs:label "zeco.json" ; dcterms:description "Zebrafish Experimental Conditions Ontology in JSON format" ; schema1:url . kgr:zeco.kg-bioportal a schema1:GraphProduct ; rdfs:label "ZECO KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Zebrafish Experimental Conditions Ontology (ZECO), produced by KG-Bioportal from the BioPortal submission. The archive contains ZECO_nodes.tsv and ZECO_edges.tsv." ; schema1:url . kgr:zeco.obo a schema1:OntologyProduct ; rdfs:label "zeco.obo" ; dcterms:description "Zebrafish Experimental Conditions Ontology in OBO format" ; schema1:url . kgr:zeco.owl a schema1:OntologyProduct ; rdfs:label "zeco.owl" ; dcterms:description "Zebrafish Experimental Conditions Ontology in OWL format" ; schema1:url . kgr:zfa.kg-bioportal a schema1:GraphProduct ; rdfs:label "ZFA KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Zebrafish Anatomy and Development Ontology (ZFA), produced by KG-Bioportal from the BioPortal submission. The archive contains ZFA_nodes.tsv and ZFA_edges.tsv." ; schema1:url . kgr:zfa.obo a schema1:OntologyProduct ; rdfs:label "zfa.obo" ; dcterms:description "Zebrafish anatomy and development ontology in OBO format" ; schema1:url . kgr:zfa.owl a schema1:OntologyProduct ; rdfs:label "zfa.owl" ; dcterms:description "Zebrafish anatomy and development ontology in OWL format" ; schema1:url . kgr:zfin.downloads a schema1:DocumentationProduct ; rdfs:label "ZFIN Data Downloads" ; dcterms:description "ZFIN data reports and bulk download portal for zebrafish genomic, expression, phenotype, anatomy, and publication datasets." ; schema1:url . kgr:zfin.gene-to-phenotype a schema1:Product ; rdfs:label "ZFIN clean gene to phenotype" ; dcterms:description "Phenotype of Zebrafish Genes" ; schema1:url . kgr:zfin.gene-to-publication a schema1:Product ; rdfs:label "ZFIN gene to publication" ; dcterms:description "Phenotype of Zebrafish Genes" ; schema1:url . kgr:zfin.zfa a schema1:OntologyProduct ; rdfs:label "ZFA" ; dcterms:description "Zebrafish Anatomical Ontology (OWL)" ; schema1:url . kgr:zfs.kg-bioportal a schema1:GraphProduct ; rdfs:label "ZFS KGX graph (KG-Bioportal)" ; dcterms:description "KGX TSV transform of Zebrafish Developmental Stages (ZFS), produced by KG-Bioportal from the BioPortal submission. The archive contains ZFS_nodes.tsv and ZFS_edges.tsv." ; schema1:url . kgr:zfs.obo a schema1:OntologyProduct ; rdfs:label "zfs.obo" ; dcterms:description "Zebrafish developmental stages ontology in OBO format" ; schema1:url . kgr:zfs.owl a schema1:OntologyProduct ; rdfs:label "zfs.owl" ; dcterms:description "Zebrafish developmental stages ontology in OWL format" ; schema1:url . kgr:zhenglab a "Organization" ; rdfs:label "Zheng Lab, School of Information Science and Technology, ShanghaiTech University" . kgr:zirc.antibody-catalog a schema1:GraphicalInterface ; rdfs:label "ZIRC Antibodies Catalog" ; dcterms:description "Web catalog of zebrafish antibodies available from ZIRC." ; schema1:url . kgr:zirc.est-catalog a schema1:GraphicalInterface ; rdfs:label "ZIRC ESTs/cDNAs Catalog" ; dcterms:description "Web catalog of zebrafish ESTs and cDNA clones available from ZIRC." ; schema1:url . kgr:zp.obo a schema1:OntologyProduct ; rdfs:label "zp.obo" ; dcterms:description "Zebrafish Phenotype Ontology in OBO format" ; schema1:url . kgr:zp.owl a schema1:OntologyProduct ; rdfs:label "zp.owl" ; dcterms:description "Zebrafish Phenotype Ontology in OWL format" ; schema1:url . kgr:zwd.alignments a schema1:Product ; rdfs:label "Zasha Weinberg Data Repository Sequence Alignments" ; dcterms:description "Multiple sequence alignments for RNA and ssDNA sequences" ; schema1:url . kgr:aact.database a schema1:Product ; rdfs:label "AACT Cloud Database" ; dcterms:description "Cloud-based PostgreSQL database with daily refreshed clinical trial data, accessible via standard PostgreSQL clients" ; schema1:url . kgr:aact.downloads a schema1:Product ; rdfs:label "AACT Database Downloads" ; dcterms:description "Static downloadable copies of the complete AACT database" ; schema1:url . kgr:aact.pipe_delimited a schema1:Product ; rdfs:label "AACT Pipe-Delimited Downloads" ; dcterms:description "Pipe-delimited text exports of the AACT database for import into databases or analysis tools" ; schema1:url . kgr:aberowl.api a schema1:ProgrammingInterface ; rdfs:label "AberOWL REST API" ; dcterms:description "REST API (FastAPI, documented with Swagger UI) for listing ontologies, retrieving classes, full-text search and DL queries (subclass, superclass, equivalent) across the AberOWL repository." ; schema1:url . kgr:aberowl.ontology-list a schema1:Product ; rdfs:label "AberOWL Ontology Listing" ; dcterms:description "JSON listing of all ontologies in AberOWL with metadata, reasoner status, class counts and relative download URLs for the mirrored OWL files." ; schema1:url . kgr:aberowl.portal a schema1:GraphicalInterface ; rdfs:label "AberOWL Portal" ; dcterms:description "Web portal for searching and browsing the AberOWL ontology repository, viewing class hierarchies and metadata, and running DL and SPARQL-rewriting queries." ; schema1:url . kgr:achilles.downloads a schema1:Product ; rdfs:label "Project Achilles Data Releases" ; dcterms:description "DepMap all-data downloads page where current Achilles and related dependency datasets are released." ; schema1:url . kgr:afcs.intact.mitab a schema1:Product ; rdfs:label "AFCS IntAct MITAB Dataset" ; dcterms:description "IntAct-hosted AFCS protein interaction dataset in PSI-MI MITAB format." ; schema1:url . kgr:agroportal.annotator a schema1:GraphicalInterface ; rdfs:label "AgroPortal Annotator" ; dcterms:description "Annotator service that tags free text with terms from AgroPortal ontologies." ; schema1:url . kgr:agroportal.api a schema1:ProgrammingInterface ; rdfs:label "AgroPortal REST API" ; dcterms:description "REST API for ontologies, classes, search, mappings, metrics, annotation, and downloads of hosted semantic artefacts. Requests require a free API key, obtained by creating an AgroPortal account. The former address https://data.agroportal.lirmm.fr/ redirects here." ; schema1:url . kgr:agroportal.ontoportal-docs a schema1:DocumentationProduct ; rdfs:label "OntoPortal Documentation" ; dcterms:description "Documentation for the OntoPortal software that AgroPortal runs on, covering installation, administration, and use of OntoPortal-based portals." ; schema1:url . kgr:agroportal.portal a schema1:GraphicalInterface ; rdfs:label "AgroPortal Portal" ; dcterms:description "Web portal for searching, browsing, and visualizing agri-food ontologies and semantic artefacts, their metadata, FAIRness scores, and mappings. The former address https://agroportal.lirmm.fr/ redirects here." ; schema1:url . kgr:aop-db.sparql a schema1:ProgrammingInterface ; rdfs:label "AOP-DB SPARQL Endpoint" ; dcterms:description "Public Virtuoso SPARQL endpoint loaded with RDF of the EPA AOP-DB for querying integrated AOP, gene, chemical, disease, tissue, pathway, orthology, ontology, and gene interaction relationships. Originally deployed under the OpenRiskNet project and now hosted by the BiGCaT department at Maastricht University." ; schema1:url . kgr:aopwiki-rdf.converter a schema1:ProcessProduct ; rdfs:label "AOP-Wiki XML to RDF Conversion Tool" ; dcterms:description "Python conversion pipeline that transforms the AOP-Wiki XML export into RDF/Turtle, performs the three-stage gene-mapping algorithm, and runs Turtle syntax and URI-resolvability quality control. Executed weekly by GitHub Actions (Saturdays 08:00 UTC). Code is MIT licensed." ; schema1:url . kgr:aopwiki-rdf.dashboard a schema1:GraphicalInterface ; rdfs:label "AOP-Wiki RDF Dashboard" ; dcterms:description "Web dashboard visualizing the content and growth of AOP-Wiki RDF across all quarterly versions, with entity counts, key event component and ontology usage breakdowns, network statistics, completeness metrics and an interactive AOP network view. Every plot exposes the SPARQL query behind it and offers CSV export." ; schema1:url . kgr:aopwiki-rdf.grlc-api a schema1:ProgrammingInterface ; rdfs:label "AOP-Wiki RDF grlc REST API" ; dcterms:description "grlc-generated REST API that exposes the curated AOP-Wiki SPARQL example queries as parameterized HTTP endpoints with a Swagger/OpenAPI description, for users who prefer REST over writing SPARQL." ; schema1:url . kgr:aopwiki-rdf.multiversion-sparql a schema1:ProgrammingInterface ; rdfs:label "AOP-Wiki RDF Multi-Version SPARQL Endpoint" ; dcterms:description "Companion SPARQL endpoint holding every quarterly AOP-Wiki snapshot from 2018-04-01 onwards as separate named graphs (http://aopwiki.org/graph/YYYY-MM-DD), 33 versions at present, for tracking how AOP-Wiki content evolves over time." ; schema1:url . kgr:aopwiki-rdf.queries a schema1:DocumentationProduct ; rdfs:label "AOP-Wiki SPARQL Query Library" ; dcterms:description "Curated library of documented SPARQL example queries for AOP-Wiki RDF, organised by category (metadata, AOPs, key events, KERs, stressors, chemicals, data export, federated queries). Consumed by both the SNORQL interface and the grlc REST API." ; schema1:url . kgr:aopwiki-rdf.snorql a schema1:GraphicalInterface ; rdfs:label "AOP-Wiki RDF SNORQL Interface" ; dcterms:description "SNORQL web interface (\"AOP-Wiki RDF Explorer\") for interactive SPARQL querying of the AOP-Wiki RDF endpoint. Provides a CodeMirror SPARQL editor with syntax highlighting, a browsable library of curated and parameterized example queries, endpoint health indication, result browsing with dereferenceable URIs, and CSV/JSON/XML export." ; schema1:url . kgr:aopwiki-rdf.sparql a schema1:ProgrammingInterface ; rdfs:label "AOP-Wiki RDF SPARQL Endpoint" ; dcterms:description "Public SPARQL 1.1 endpoint (Virtuoso 7.2.11) serving the AOP-Wiki RDF graph, including the gene-mapping and cross-reference enrichments. Supports SELECT, CONSTRUCT, ASK and DESCRIBE over HTTP GET/POST with JSON, XML, CSV and Turtle result serializations, and federated queries via SERVICE. Reloaded weekly from the generated Turtle files." ; schema1:url . kgr:aopwiki-rdf.void a schema1:Product ; rdfs:label "AOP-Wiki RDF VoID Description" ; dcterms:description "VoID metadata describing the AOP-Wiki RDF dataset, its triple counts, licence, provenance, update frequency and SPARQL endpoint." ; schema1:url . kgr:arrayexpress.api a schema1:ProgrammingInterface ; rdfs:label "ArrayExpress Search API" ; dcterms:description "BioStudies REST API endpoint for searching ArrayExpress studies, returning JSON; per-study metadata and file listings are available from the BioStudies studies endpoints." ; schema1:url . kgr:atom.kg a schema1:GraphProduct ; rdfs:label "ATOM Knowledge Graph" ; dcterms:description "Anti-tumor biomaterial knowledge graph constructed from biomedicine literature, containing structured relationships among anti-tumor entities extracted through entity recognition, sentence simplification, triple extraction, and predicate mapping." ; schema1:url . kgr:atom.pipeline a schema1:ProcessProduct ; rdfs:label "ATOM Construction Pipeline" ; dcterms:description "Natural language processing pipeline for constructing anti-tumor biomaterial knowledge graphs from unstructured biomedicine literature, implementing entity recognition, sentence simplification, triple extraction, and predicate mapping processes." ; schema1:url . kgr:automat.ctd a schema1:GraphProduct ; rdfs:label "ctd_automat" ; dcterms:description "CTD Automat" ; schema1:url . kgr:automat.drugcentral a schema1:GraphProduct ; rdfs:label "drugcentral_automat" ; dcterms:description "DrugCentral Automat" ; schema1:url . kgr:automat.gtex a schema1:GraphProduct ; rdfs:label "gtex_automat" ; dcterms:description "GTEx Automat" ; schema1:url . kgr:automat.gtopdb a schema1:GraphProduct ; rdfs:label "gtopdb_automat" ; dcterms:description "GtoPdb Automat" ; schema1:url . kgr:automat.gwascatalog a schema1:GraphProduct ; rdfs:label "gwascatalog_automat" ; dcterms:description "GWASCatalog Automat" ; schema1:url . kgr:automat.hetio a schema1:GraphProduct ; rdfs:label "hetio_automat" ; dcterms:description "Hetio Automat" ; schema1:url . kgr:automat.hgnc a schema1:GraphProduct ; rdfs:label "hgnc_automat" ; dcterms:description "HGNC Automat" ; schema1:url . kgr:automat.hmdb a schema1:GraphProduct ; rdfs:label "hmdb_automat" ; dcterms:description "HMDB Automat" ; schema1:url . kgr:automat.humangoa a schema1:GraphProduct ; rdfs:label "humangoa_automat" ; dcterms:description "HumanGOA Automat" ; schema1:url . kgr:automat.intact a schema1:GraphProduct ; rdfs:label "intact_automat" ; dcterms:description "IntAct Automat" ; schema1:url . kgr:automat.ohd-carolina a schema1:GraphProduct ; rdfs:label "OHD_Carolina_Automat" ; dcterms:description "OHD Carolina Automat: per-source KGX knowledge graph download (Biolink 4.2.1)." ; schema1:url . kgr:automat.panther a schema1:GraphProduct ; rdfs:label "panther_automat" ; dcterms:description "PANTHER Automat" ; schema1:url . kgr:automat.pharos a schema1:GraphProduct ; rdfs:label "pharos_automat" ; dcterms:description "PHAROS Automat" ; schema1:url . kgr:automat.stringdb a schema1:GraphProduct ; rdfs:label "stringdb_automat" ; dcterms:description "STRING-DB Automat" ; schema1:url . kgr:automat.ubergraph a schema1:GraphProduct ; rdfs:label "ubergraph_automat" ; dcterms:description "UberGraph Automat" ; schema1:url . kgr:bio101.exported-kb a schema1:Product ; rdfs:label "KB Bio 101 Exported Knowledge Base" ; dcterms:description "The full KB Bio 101 knowledge base exported from SRI's AURA system. It is offered as a downloadable archive in five logic serializations (first-order predicate logic, TPTP FOF, Answer Set Programming, SILK rule language, and OWL2), available as single-file or per-concept file versions." ; schema1:url . kgr:biobricks-aopwiki.graph a schema1:GraphProduct ; rdfs:label "BioBricks AOP-Wiki Graph" ; dcterms:description "RDF knowledge graph (Turtle) repackaging AOP-Wiki data as an open knowledge graph" ; schema1:url . kgr:biobricks-ice.graph a schema1:GraphProduct ; rdfs:label "BioBricks ICE Knowledge Graph" ; dcterms:description "RDF knowledge graph repackaging ICE (Integrated Chemical Environment) cheminformatics and chemical safety data, built and published from the biobricks-okg repository." ; schema1:url . kgr:biobricks-mesh.graph a schema1:GraphProduct ; rdfs:label "BioBricks MeSH Graph" ; dcterms:description "RDF knowledge graph (Turtle) repackaging the MeSH biomedical vocabulary as an open knowledge graph" ; schema1:url . kgr:biobricks-pubchem-annotations.graph a schema1:GraphProduct ; rdfs:label "BioBricks PubChem Annotations Graph" ; dcterms:description "RDF knowledge graph (Turtle) repackaging PubChem chemical annotations as an open knowledge graph" ; schema1:url . kgr:biobricks-tox21.graph a schema1:GraphProduct ; rdfs:label "BioBricks Tox21 Knowledge Graph" ; dcterms:description "RDF knowledge graph repackaging EPA/NIH Tox21 high-throughput toxicology screening data, distributed via the biobricks-okg repository." ; schema1:url . kgr:biobricks-toxcast.graph a schema1:GraphProduct ; rdfs:label "BioBricks ToxCast Graph" ; dcterms:description "RDF knowledge graph (Turtle) repackaging EPA ToxCast high-throughput screening data as an open knowledge graph" ; schema1:url . kgr:biodata-catalyst.imputation-server a schema1:ProcessProduct ; rdfs:label "TOPMed Imputation Server" ; dcterms:description "TOPMed Imputation Server, a web service that imputes missing genotypes in user-submitted GWAS data using the TOPMed haplotype reference panel." ; schema1:url . kgr:biodata-catalyst.portal a schema1:GraphicalInterface ; rdfs:label "BioData Catalyst Portal" ; dcterms:description "BioData Catalyst portal, the entry point to the ecosystem's data catalog, data access instructions, analysis platforms and training resources." ; schema1:url . kgr:biodivportal.api a schema1:ProgrammingInterface ; rdfs:label "BiodivPortal REST API" ; dcterms:description "OntoPortal REST API for artefact metadata, concepts, search, mappings, annotation, recommendation, and downloads. Requests require a BiodivPortal API key, available with a free account." ; schema1:url . kgr:biodivportal.portal a schema1:GraphicalInterface ; rdfs:label "BiodivPortal Portal" ; dcterms:description "Web portal for searching, browsing, and visualizing biodiversity ontologies and semantic artefacts, with mappings, a recommender, and a landscape view of the catalogue." ; schema1:url . kgr:biogrid.ptms-latest a schema1:Product ; rdfs:label "BioGRID Latest PTM Download" ; dcterms:description "BioGRID latest post-translational modification download archive containing PTM and PTMREL files with BioGRID PTM records and annotation data; the current PhosphoGRID site redirects search and download activity into BioGRID." ; schema1:url . kgr:biomarker.bkg.edges.anatomy a schema1:GraphProduct ; rdfs:label "BKG Anatomy Edges" ; dcterms:description "Biomarker to Anatomy relationships (determined_using_sample_from)" ; schema1:url . kgr:biomarker.bkg.edges.compound a schema1:GraphProduct ; rdfs:label "BKG Compound Edges" ; dcterms:description "Biomarker to Compound relationships (indicated_by_above_normal_level_of, indicated_by_below_normal_level_of)" ; schema1:url . kgr:biomarker.bkg.edges.condition a schema1:GraphProduct ; rdfs:label "BKG Condition Edges" ; dcterms:description "Biomarker to Condition relationships (diagnostic_for, indicates_risk_of_developing, prognostic_for)" ; schema1:url . kgr:biomarker.bkg.edges.role a schema1:GraphProduct ; rdfs:label "BKG Role Edges" ; dcterms:description "Biomarker to Role relationships (has_best_classification)" ; schema1:url . kgr:biomarker.bkg.edges.variant a schema1:GraphProduct ; rdfs:label "BKG Variant Edges" ; dcterms:description "Biomarker to Variant relationships (indicated_by_presence_of)" ; schema1:url . kgr:biomarker.bkg.nodes.anatomy a schema1:GraphProduct ; rdfs:label "BKG Anatomy Nodes" ; dcterms:description "Nodes from Uber-Anatomy Ontology" ; schema1:url . kgr:biomarker.bkg.nodes.biomarker a schema1:GraphProduct ; rdfs:label "BKG Biomarker Nodes" ; dcterms:description "Nodes from GlyGen Biomarker Database" ; schema1:url . kgr:biomarker.bkg.nodes.compound a schema1:GraphProduct ; rdfs:label "BKG Compound Nodes" ; dcterms:description "Nodes from PubChem Database" ; schema1:url . kgr:biomarker.bkg.nodes.condition a schema1:GraphProduct ; rdfs:label "BKG Condition Nodes" ; dcterms:description "Nodes from Human Disease Ontology" ; schema1:url . kgr:biomarker.bkg.nodes.role a schema1:GraphProduct ; rdfs:label "BKG Role Nodes" ; dcterms:description "Nodes from OBCI" ; schema1:url . kgr:biomarker.bkg.nodes.variant a schema1:GraphProduct ; rdfs:label "BKG Variant Nodes" ; dcterms:description "Nodes from dbSNP" ; schema1:url . kgr:biomarker.kg a schema1:GraphProduct ; rdfs:label "BiomarkerKB Knowledge Graph" ; dcterms:description "Neo4j knowledge graph built from curated BiomarkerKB data and integrated into the CFDE Unified Biomedical Knowledge Graph (UBKG). The initial release comprises over 300,000 nodes and 1.2 million edges." ; schema1:url . kgr:biostudies.api a schema1:ProgrammingInterface ; rdfs:label "BioStudies REST API" ; dcterms:description "REST API returning JSON for searching BioStudies, with per-collection search endpoints and per-study metadata and file listings. Covers all collections, including supplementary data imported from Europe PMC." ; schema1:url . kgr:brain-cell-kg.owl-mappings a schema1:MappingProduct ; rdfs:label "Brain_Cell_KG OWL mapping files" ; dcterms:description "OWL files generated in the repository and loaded into the KG, including annotation transfer mappings between the HMBA Basal Ganglia and Whole Mouse Brain taxonomies and between the Whole Human Brain and Whole Mouse Brain taxonomies (scFAIR), Whole Mouse Brain cell type to anatomy, gene and neurotransmitter links, MERFISH-derived cell type location mappings, region adjacency axioms and Allen Mouse Brain Atlas CCF 2020 coverage files." ; schema1:url . kgr:cadd.gnomad-indels.grch38 a schema1:Product ; rdfs:label "CADD v1.7 gnomAD v4.0 InDel Scores (GRCh38)" ; dcterms:description "CADD v1.7 scores for small insertions and deletions observed in gnomAD v4.0 genomes, on GRCh38, tab-separated and bgzip-compressed with a tabix index." ; schema1:url . kgr:cam-kp.go-cams a schema1:Product ; rdfs:label "Gene Ontology CAMs" ; dcterms:description "Gene Ontology Causal Activity Model (GO-CAM) annotations manually curated by Gene Ontology biocurators linking genes, proteins, and biological processes. Distributed as the canonical noctua-models repository, where each model is stored as a Turtle (TTL) file." ; schema1:url . kgr:cam-kp.reactome-cams a schema1:Product ; rdfs:label "Reactome Pathway CAMs" ; dcterms:description "Causal Activity Model graphs automatically generated from Reactome pathways using the Pathways2GO tool, translating pathway reactions to causal relationships" . kgr:cardiokg.data a schema1:Product ; rdfs:label "CardioKG supporting data tables" ; dcterms:description "CardioKG supporting data tables for anatomy and cardiac magnetic resonance anatomy mappings. The GitHub repository is no longer available; these files are inside the archived Zenodo snapshot." ; schema1:url . kgr:cellminer.downloads a schema1:Product ; rdfs:label "CellMiner Data Downloads" ; dcterms:description "CellMiner download page listing processed NCI-60 datasets (drug activity z-scores, copy number, exome mutations, methylation, transcript expression, microRNA, proteomics and histone marks) and raw datasets, each as a ZIP archive containing Excel workbooks plus documentation." ; schema1:url . kgr:cellminer.drug-raw a schema1:Product ; rdfs:label "CellMiner DTP NCI-60 Raw Drug Activity" ; dcterms:description "Raw DTP NCI-60 compound activity data (negative log10 GI50 values for all replicate experiments) across the NCI-60 cell lines, provided as an Excel workbook with drug and cell line metadata documentation." ; schema1:url . kgr:cellminer.drug-zscore a schema1:Product ; rdfs:label "CellMiner DTP NCI-60 Drug Activity Z-Scores" ; dcterms:description "Processed DTP NCI-60 compound activity data as z-scores of negative log10 GI50 values across the NCI-60 cell lines, provided as an Excel workbook with drug and cell line metadata documentation." ; schema1:url . kgr:cellminer.portal a schema1:GraphicalInterface ; rdfs:label "CellMiner Portal" ; dcterms:description "CellMiner web portal for querying NCI-60 gene transcript, DNA, protein and drug activity patterns, comparing patterns across cell lines and browsing cell line metadata." ; schema1:url . kgr:cellmodelpassports.crispr_fitness_scores a schema1:Product ; rdfs:label "Cell Model Passports CRISPR Fitness Scores" ; dcterms:description "Project Score CRISPR knockout gene fitness scores for Sanger and Broad DepMap (21Q2) cell line screens." ; schema1:url . kgr:cellmodelpassports.gdsc2_dose_response a schema1:Product ; rdfs:label "GDSC2 Fitted Dose Response" ; dcterms:description "GDSC2 fitted drug dose response values (IC50, AUC) for cancer cell lines, distributed through the Cell Model Passports downloads." ; schema1:url . kgr:cellmodelpassports.rnaseq_merged a schema1:Product ; rdfs:label "Cell Model Passports Merged RNA-seq Expression" ; dcterms:description "Processed RNA-seq gene expression for Sanger and Broad DepMap models, merged into a single dataset." ; schema1:url . kgr:chea-kg.api a schema1:ProgrammingInterface ; rdfs:label "ChEA-KG API" ; dcterms:description "ChEA3 API endpoint for submitting gene sets and retrieving transcription factor enrichment results as JSON" ; schema1:url . kgr:chea-kg.portal a schema1:GraphicalInterface ; rdfs:label "ChEA-KG Explorer" ; dcterms:description "Interactive ChEA3 web interface for transcription factor enrichment analysis, result tables, and network visualizations" ; schema1:url . kgr:chembl.map_to_uniprot a schema1:MappingProduct ; rdfs:label "ChEMBL map to UniProt" ; dcterms:description "Mapping between chembl_35 target chembl_ids and UniProt accessions" ; schema1:url . kgr:chemid.pubchem-guide a schema1:DocumentationProduct ; rdfs:label "Accessing ChemIDplus Content from PubChem" ; dcterms:description "NLM guide for locating migrated ChemIDplus content within PubChem." ; schema1:url . kgr:chemid.pubchem-source a schema1:GraphicalInterface ; rdfs:label "ChemIDplus in PubChem" ; dcterms:description "PubChem source page for ChemIDplus, providing the current access point for ChemIDplus substance records and annotations after the standalone NLM service was retired." ; schema1:url . kgr:chip-atlas.colocalization a schema1:Product ; rdfs:label "ChIP-Atlas Colocalization" ; dcterms:description "Colocalization scores between pairs of transcription factors or other DNA-binding proteins within each cell type class, as TSV tables per protein and cell type class. Files follow the pattern [Genome]/colo/[Protein].[Cell_type_class].tsv; the URL given is one example file." ; schema1:url . kgr:chip-atlas.experimentlist a schema1:Product ; rdfs:label "ChIP-Atlas experimentList.tab" ; dcterms:description "Metadata table describing every ChIP-seq, ATAC-seq, DNase-seq and Bisulfite-seq experiment (SRX, DRX or ERX accession) in ChIP-Atlas, including genome assembly, curated antigen and cell type classes, and processing statistics." ; schema1:url . kgr:chip-atlas.peaks.assembled a schema1:Product ; rdfs:label "ChIP-Atlas Assembled Peak-call Data" ; dcterms:description "Assembled BED9 peak-call files used in the Peak Browser, concatenating peaks across experiments by antigen or track type and cell type class, with sample metadata in GFF3-style attributes for display in IGV. Files are named as listed in fileList.tab; the URL given is one example file." ; schema1:url . kgr:chip-atlas.peaks.each a schema1:Product ; rdfs:label "ChIP-Atlas Per-Experiment Peak Calls and Coverage" ; dcterms:description "Peak calls (MACS2, BED4 and BigBed) and coverage tracks (BigWig) for each individual experiment, at MACS2 Q-value thresholds of 1e-05, 1e-10 and 1e-20, plus methylation rate, coverage and hypo-, partially and hyper-methylated region files for Bisulfite-seq. Files are addressed by genome assembly and experiment accession under the data directory." ; schema1:url . kgr:chip-atlas.peaks.light a schema1:Product ; rdfs:label "ChIP-Atlas All Peaks (Light)" ; dcterms:description "Lighter version of all peak-call data for each genome assembly and significance threshold, as gzipped BED files with experiment accessions in place of full metadata." ; schema1:url . kgr:chip-atlas.portal a schema1:GraphicalInterface ; rdfs:label "ChIP-Atlas Web Portal" ; dcterms:description "ChIP-Atlas web portal with the Peak Browser, Target Genes, Colocalization, Enrichment Analysis, Diff Analysis and experiment search tools for exploring reprocessed public ChIP-seq, ATAC-seq, DNase-seq and Bisulfite-seq data." ; schema1:url . kgr:chip-atlas.targetgenes a schema1:Product ; rdfs:label "ChIP-Atlas Target Genes" ; dcterms:description "Predicted target genes of each transcription factor or other DNA-binding protein, as TSV tables of binding scores near transcription start sites within 1, 5 or 10 kb, across all experiments for that protein. Files follow the pattern [Genome]/target/[Protein].[Distance].tsv; the URL given is one example file." ; schema1:url . kgr:clinicaltrialsgov.aact a schema1:Product ; rdfs:label "AACT Database" ; dcterms:description "Aggregate Analysis of ClinicalTrials.gov (AACT) - A relational PostgreSQL database containing all clinical trial data, updated daily" ; schema1:url . kgr:clinpgx.downloads a schema1:DocumentationProduct ; rdfs:label "ClinPGx Downloads" ; dcterms:description "Downloads page listing the bulk data files (formerly the PharmGKB downloads), with data usage policy and file descriptions" ; schema1:url . kgr:cmap.clue a schema1:GraphicalInterface ; rdfs:label "CLUE Platform" ; dcterms:description "Cloud-based user interface providing suite of apps for querying gene expression signatures, browsing perturbagen data, searching metadata, and visualizing connectivity results" ; schema1:url . kgr:cmap.connectopedia a schema1:DocumentationProduct ; rdfs:label "Connectopedia" ; dcterms:description "Comprehensive knowledge base containing glossary, tutorials, analytical methods, experimental protocols, and detailed documentation" ; schema1:url . kgr:cmap.data_downloads a schema1:Product ; rdfs:label "CMap Data Downloads" ; dcterms:description "Data releases containing replicate-collapsed signatures and gene expression profiles in GCTx matrix format available for download" ; schema1:url . kgr:cmap.python_api a schema1:ProgrammingInterface ; rdfs:label "cmapBQ Python Library" ; dcterms:description "Python library cmapBQ for programmatic access to CMap data through Google BigQuery with query capabilities for signatures and metadata" ; schema1:url . kgr:cmap.query_app a schema1:GraphicalInterface ; rdfs:label "CLUE Query App" ; dcterms:description "Query app enabling users to search CMap database with custom gene expression signatures to find perturbagens with similar or opposing transcriptional effects" ; schema1:url . kgr:connections-hypothesis-kp.smartapi a schema1:DocumentationProduct ; rdfs:label "Connections Hypothesis KP SmartAPI Entry" ; dcterms:description "SmartAPI registry listing for CHP service metadata and interface documentation." ; schema1:url . kgr:ctd.chem_go_enriched a schema1:Product ; rdfs:label "CTD Chemical-GO Enriched Associations" ; dcterms:description "Gene Ontology terms statistically enriched among the genes and proteins that interact with each chemical or its descendants, with p-values and match counts. Also available as CSV and XML." ; schema1:url . kgr:ctd.chemicals a schema1:Product ; rdfs:label "CTD Chemical Vocabulary" ; dcterms:description "CTD's hierarchical chemical vocabulary, a modified subset of the MeSH Chemicals and Drugs branch, with CAS Registry Numbers, definitions, parent terms, tree numbers, and synonyms. Also available as CSV and XML." ; schema1:url . kgr:ctd.exposure_ontology a schema1:OntologyProduct ; rdfs:label "CTD Exposure Ontology (ExO)" ; dcterms:description "The draft Exposure Ontology (ExO) as distributed by CTD, which provides exposure context for CTD's exposure data." ; schema1:url . kgr:ctd.genes a schema1:Product ; rdfs:label "CTD Gene Vocabulary" ; dcterms:description "CTD's gene vocabulary, keyed by NCBI Gene identifier, with symbols, names, synonyms, and cross-references to BioGRID, PharmGKB, and UniProt. Also available as CSV and XML." ; schema1:url . kgr:ctd.pheno_term_ixns a schema1:Product ; rdfs:label "CTD Chemical-Phenotype Interactions" ; dcterms:description "Curated chemical-phenotype interactions, where phenotypes are Gene Ontology terms, with co-mentioned terms, anatomy terms, organism, interaction actions, and PubMed evidence. Also available as CSV and XML." ; schema1:url . kgr:ctd.phenotype_disease_bp a schema1:Product ; rdfs:label "CTD Phenotype-Disease Inference Network (Biological Process)" ; dcterms:description "Inferred associations between Gene Ontology biological process terms and diseases, with the chemicals and genes through which each association is inferred. Also available as CSV and XML." ; schema1:url . kgr:ctd.phenotype_disease_cc a schema1:Product ; rdfs:label "CTD Phenotype-Disease Inference Network (Cellular Component)" ; dcterms:description "Inferred associations between Gene Ontology cellular component terms and diseases, with the chemicals and genes through which each association is inferred. Also available as CSV and XML." ; schema1:url . kgr:ctd.phenotype_disease_mf a schema1:Product ; rdfs:label "CTD Phenotype-Disease Inference Network (Molecular Function)" ; dcterms:description "Inferred associations between Gene Ontology molecular function terms and diseases, with the chemicals and genes through which each association is inferred. Also available as CSV and XML." ; schema1:url . kgr:ctkp.docs a schema1:DocumentationProduct ; rdfs:label "Clinical Trials KP Documentation" ; dcterms:description "Translator wiki documentation for Clinical Trials KP, including source and access details." ; schema1:url . kgr:ddbj.bioproject a schema1:Product ; rdfs:label "DDBJ BioProject" ; dcterms:description "BioProject XML records (all INSDC projects and the DDBJ-registered subset) with a summary file and XML schema." ; schema1:url . kgr:ddbj.biosample a schema1:Product ; rdfs:label "DDBJ BioSample" ; dcterms:description "BioSample XML records (all INSDC samples and the DDBJ-registered subset) with a summary file and XML schema." ; schema1:url . kgr:drug-approvals-kp.code a schema1:ProcessProduct ; rdfs:label "Drug Approvals KP code" ; dcterms:description "Code for the Drug Approvals KP" ; schema1:url . kgr:earthportal.api a schema1:ProgrammingInterface ; rdfs:label "EarthPortal REST API" ; dcterms:description "OntoPortal REST API for artefact metadata, concepts, search, mappings, annotation, and downloads. Requests require an EarthPortal API key, available with a free account." ; schema1:url . kgr:earthportal.portal a schema1:GraphicalInterface ; rdfs:label "EarthPortal Portal" ; dcterms:description "Web portal for searching, browsing, and visualizing Earth and environmental science ontologies and semantic artefacts, with mappings, a recommender, and a landscape view of the catalogue." ; schema1:url . kgr:ecoportal.api a schema1:ProgrammingInterface ; rdfs:label "EcoPortal REST API" ; dcterms:description "OntoPortal REST API for EcoPortal ontologies, classes, search, mappings, metrics, annotation and downloads. Requests require an API key, available free with an EcoPortal account." ; schema1:url . kgr:ecoportal.portal a schema1:GraphicalInterface ; rdfs:label "EcoPortal Portal" ; dcterms:description "Web portal for searching, browsing and visualizing ecological ontologies, thesauri and their mappings, with ontology recommender, text annotator and submission of new semantic artefacts." ; schema1:url . kgr:ecso.bioportal a schema1:GraphicalInterface ; rdfs:label "ECSO BioPortal Entry" ; dcterms:description "NCBO BioPortal entry for browsing and searching ECSO" ; schema1:url . kgr:efip.text-mining-system a schema1:ProcessProduct ; rdfs:label "eFIP Text-Mining System" ; dcterms:description "eFIP text-mining workflow for retrieving protein literature, extracting phosphorylation mentions, detecting protein-protein interaction mentions, and identifying temporal or causal relationships between phosphorylation and interaction events." ; schema1:url . kgr:ehrlink.pharmacotherapydb-processing a schema1:Product ; rdfs:label "EHRLink PharmacotherapyDB Processing Files" ; dcterms:description "PharmacotherapyDB processing workspace for EHRLink medication-problem association data, including notebooks for converting, mapping, and preparing EHRLink-derived indications." ; schema1:url . kgr:ekg.csv a schema1:Product ; rdfs:label "eKG Raw Extractions CSV" ; dcterms:description "CSV file containing the raw epidemiological information extractions used to derive eKG" ; schema1:url . kgr:emind.json a schema1:Product ; rdfs:label "eMIND JSON Export" ; dcterms:description "Gzipped JSON export of the eMIND text-mined literature annotations for variant impacts in Alzheimer's disease and related dementias" ; schema1:url . kgr:emind.site a schema1:GraphicalInterface ; rdfs:label "eMIND Web Interface" ; dcterms:description "Web interface for browsing eMIND text-mined variant-impact annotations in Alzheimer's disease and related dementia literature" ; schema1:url . kgr:enrichr-kg.api a schema1:ProgrammingInterface ; rdfs:label "Enrichr-KG API" ; dcterms:description "API surface for programmatic access to Enrichr-KG enrichment analysis and graph-backed query results" ; schema1:url . kgr:enrichr-kg.nodes-csv a schema1:Product ; rdfs:label "Enrichr-KG Node CSV Snapshot" ; dcterms:description "Node-table CSV snapshot from the Enrichr-KG downloads page containing node metadata for a current release" ; schema1:url . kgr:enrichr-kg.portal a schema1:GraphicalInterface ; rdfs:label "Enrichr-KG Explorer" ; dcterms:description "Interactive web interface for gene set enrichment analysis, Enrichr term expansion, and graph exploration across integrated Enrichr-KG libraries" ; schema1:url . kgr:envthes.ttl a schema1:OntologyProduct ; rdfs:label "EnvThes Turtle" ; dcterms:description "Full EnvThes SKOS thesaurus in Turtle, generated from the source spreadsheet by the sheet2rdf workflow in the EnvThes GitHub repository." ; schema1:url . kgr:european-molecular-biology-laboratory-embl a "Organization" ; rdfs:label "EMBL" . kgr:europepmc.oa-fulltext a schema1:Product ; rdfs:label "Europe PMC Open Access Full Text" ; dcterms:description "Bulk download of the Europe PMC open access full-text subset as gzipped JATS XML files grouped by PMCID range." ; schema1:url . kgr:eva.rs-releases a schema1:Product ; rdfs:label "EVA RefSNP Releases" ; dcterms:description "EVA RefSNP (RS) releases, one directory per release, browsable by species and by assembly accession. Each assembly folder holds current, merged, deprecated and merged-deprecated RS ID files (VCF and text, gzip), and each species folder an unmapped IDs file. Release 9 (May 2026) covers 315 species. RS IDs for non-human species include variants imported from dbSNP." ; schema1:url . kgr:expressionatlas.baseline-summary a schema1:Product ; rdfs:label "Expression Atlas Baseline Summary" ; dcterms:description "Baseline expression summary data across human tissues and cell types from GTEx, Human Protein Atlas and other major studies" ; schema1:url . kgr:expressionatlas.differential-results a schema1:Product ; rdfs:label "Expression Atlas Differential Results" ; dcterms:description "Differential gene expression results across diseases, perturbations, and comparative studies with statistical significance metrics" ; schema1:url . kgr:expressionatlas.experiment-downloads a schema1:Product ; rdfs:label "Expression Atlas Experiment Downloads" ; dcterms:description "Individual experiment data downloads in TSV format containing expression matrices and statistical results" ; schema1:url . kgr:expressionatlas.ftp-bulk a schema1:Product ; rdfs:label "Expression Atlas FTP (Bulk Data)" ; dcterms:description "FTP archive containing processed expression data files, experiment metadata, and analysis results for bulk RNA-seq experiments" ; schema1:url . kgr:expressionatlas.r-objects a schema1:Product ; rdfs:label "Expression Atlas R Data Objects" ; dcterms:description "Normalized gene expression data and raw count matrices delivered as R SummarizedExperiment objects via the ExpressionAtlas Bioconductor package, which downloads and imports Expression Atlas experiment data into R for computational analysis" ; schema1:url . kgr:faers.quarterly_data_ascii a schema1:Product ; rdfs:label "FAERS Quarterly Data Files (ASCII)" ; dcterms:description "Quarterly data extracts in ASCII format containing demographic, drug, reaction, outcome, and source information for reported adverse events" ; schema1:url . kgr:faers.quarterly_data_xml a schema1:Product ; rdfs:label "FAERS Quarterly Data Files (XML)" ; dcterms:description "Quarterly data extracts in XML format adhering to ICH E2B standards for international safety reporting" ; schema1:url . kgr:fda a "Organization" ; rdfs:label "FDA Center for Drug Evaluation and Research", "FDA Substance Registration System Team" . kgr:foodkg.sparql a schema1:ProgrammingInterface ; rdfs:label "FoodKG SPARQL Endpoint" ; dcterms:description "Public Blazegraph SPARQL endpoint for querying FoodKG recipes, ingredients and nutrition data (namespace kb)." ; schema1:url . kgr:foodkg.whattomake-foodon a schema1:OntologyProduct ; rdfs:label "WhatToMake FoodOn Module" ; dcterms:description "FoodOn component of the WhatToMake ontology, containing the classes imported from FoodOn." ; schema1:url . kgr:freebase.wikidata-mappings a schema1:MappingProduct ; rdfs:label "Freebase/Wikidata Mappings" ; dcterms:description "About 2.1 million owl sameAs links between Freebase MIDs and Wikidata items, built from the Wikidata dump of 2013-10-28 using shared Wikipedia links, released under CC0." ; schema1:url . kgr:gemscript.bulletin a schema1:DocumentationProduct ; rdfs:label "Gemscript Monthly Bulletin" ; dcterms:description "Monthly Gemscript bulletin summarizing additions, deletions, name changes, and drug class changes in the active dictionary" ; schema1:url . kgr:gemscript.documentation a schema1:DocumentationProduct ; rdfs:label "Gemscript Vision Help Documentation" ; dcterms:description "Vision help documentation describing Gemscript as the integrated drug dictionary used in Vision 3 prescribing workflows" ; schema1:url . kgr:gendr.expression-signatures a schema1:Product ; rdfs:label "GenDR Dietary Restriction Expression Signatures" ; dcterms:description "Excel spreadsheet of dietary-restriction gene expression signatures from the HAGR meta-analysis of dietary restriction in mammals" ; schema1:url . kgr:gene-expression-atlas-okn.graph a schema1:GraphProduct ; rdfs:label "Gene Expression Atlas OKN Graph" ; dcterms:description "RDF graph of the Gene Expression Atlas OKN knowledge graph, served via the FRINK federated knowledge network." ; schema1:url . kgr:genecards.clinical.trials a schema1:Product ; rdfs:label "GeneCards Clinical Trials" ; dcterms:description "Clinical trial information from ClinicalTrials.gov" ; schema1:url . kgr:genecards.gene.ontology a schema1:Product ; rdfs:label "GeneCards Gene Ontology Annotations" ; dcterms:description "Gene ontology annotations from the Gene Ontology Consortium" ; schema1:url . kgr:genecards.literature a schema1:Product ; rdfs:label "GeneCards Literature References" ; dcterms:description "Literature references from PubMed automatically associated with genes" ; schema1:url . kgr:genecards.protein.structures a schema1:Product ; rdfs:label "GeneCards Protein Structure Data" ; dcterms:description "Protein structure data from PDB Europe and other structural databases" ; schema1:url . kgr:genemania.cytoscape-app a schema1:Product ; rdfs:label "GeneMANIA Cytoscape App" ; dcterms:description "Open-source Cytoscape app that brings GeneMANIA gene function prediction, downloadable data sets, command-line tools, and Cytoscape Automation support to desktop network analysis workflows" ; schema1:url . kgr:genereviews.genes a schema1:MappingProduct ; rdfs:label "GeneReviews to Gene Symbol Mapping" ; dcterms:description "Tab-delimited mapping of GeneReviews chapters (NBK id and short name) to HGNC gene symbols, updated weekly." ; schema1:url . kgr:genereviews.genes-diseases a schema1:MappingProduct ; rdfs:label "GeneReviews Gene and Disease Name Mapping" ; dcterms:description "Pipe-delimited mapping of GeneReviews short names and NBK ids to gene symbols and disease names, without a header row, updated weekly." ; schema1:url . kgr:genereviews.omim a schema1:MappingProduct ; rdfs:label "GeneReviews to OMIM Mapping" ; dcterms:description "Tab-delimited mapping of GeneReviews chapters (NBK id and short name) to OMIM numbers, updated weekly." ; schema1:url . kgr:genereviews.titles a schema1:Product ; rdfs:label "GeneReviews Titles" ; dcterms:description "Tab-delimited list of GeneReviews chapters with short name, chapter title, NCBI Bookshelf (NBK) id and PubMed id, updated weekly." ; schema1:url . kgr:genetics-kp.trapi a schema1:ProgrammingInterface ; rdfs:label "Genetics KP TRAPI Endpoint" ; dcterms:description "Translator Reasoner API endpoint for Genetics KP." ; schema1:url . kgr:gff.specification a schema1:DocumentationProduct ; rdfs:label "GFF3 Specification" ; dcterms:description "GFF3 specification (version 1.26, 18 August 2020, by Lincoln Stein), maintained in the Sequence Ontology Specifications repository. Column 3 feature types must be Sequence Ontology terms or accessions." ; schema1:url . kgr:glkb.site a schema1:GraphicalInterface ; rdfs:label "GLKB Site" ; dcterms:description "Graphical interface for GLKB" ; schema1:url . kgr:glycocoo.bioportal a schema1:GraphicalInterface ; rdfs:label "GlycoCoO BioPortal Entry" ; dcterms:description "NCBO BioPortal entry for browsing and exploring the GlycoCoO ontology" ; schema1:url . kgr:glycocoo.ontology a schema1:OntologyProduct ; rdfs:label "GlycoCoO OWL Ontology" ; dcterms:description "The GlycoCoO OWL ontology file defining classes and predicates for glycoconjugate structures and their metadata" ; schema1:url . kgr:glycocoo.sparql-examples a schema1:Product ; rdfs:label "GlycoCoO SPARQL Query Examples" ; dcterms:description "Example SPARQL queries for querying glycoconjugate data across federated endpoints" ; schema1:url . kgr:glycocoo.wiki a schema1:DocumentationProduct ; rdfs:label "GlycoCoO Wiki Documentation" ; dcterms:description "GitHub Wiki with developer information, database providers, and prefix documentation" ; schema1:url . kgr:glyconavi.glycans a schema1:Product ; rdfs:label "GlycoNAVI Glycans" ; dcterms:description "GlycoNAVI glycan structure table with GlyTouCan identifiers and WURCS strings, available through browser views and JSON, CSV, and TSV downloads." ; schema1:url . kgr:glycordf.bioportal a schema1:GraphicalInterface ; rdfs:label "GlycoRDF BioPortal Entry" ; dcterms:description "NCBO BioPortal entry for browsing and exploring the GlycoRDF ontology" ; schema1:url . kgr:goa.proteomes a schema1:Product ; rdfs:label "Proteomes GOA Annotations" ; dcterms:description "GO annotations organized by proteomes" ; schema1:url . kgr:goa.quickgo a schema1:GraphicalInterface ; rdfs:label "QuickGO Browser" ; dcterms:description "Browser for searching and viewing Gene Ontology terms and GOA annotations" ; schema1:url . kgr:gpmdb.api a schema1:ProgrammingInterface ; rdfs:label "GPMDB REST API" ; dcterms:description "GPMDB REST API (version 2015.02.19) returning JSON for protein and peptide observation counts, best expectation values, peptide sequences, charge states, modifications, single amino acid variants and protein sequences, keyed by protein accession (mainly Ensembl ENSP identifiers) or peptide sequence." ; schema1:url . kgr:gtex.dbgap-data a schema1:Product ; rdfs:label "GTEx dbGaP Data" ; dcterms:description "Individual-level genotype and phenotype data available through dbGaP" ; schema1:url . kgr:gtrx.api a schema1:ProgrammingInterface ; rdfs:label "gTRx API" ; dcterms:description "BioThings API for querying Genome-to-Treatment association records through `/query`, `/metadata`, and related BioThings endpoints" ; schema1:url . kgr:hald.aging-biomarkers.json a schema1:Product ; rdfs:label "HALD Aging Biomarkers" ; dcterms:description "Version 6 JSON file containing aging biomarker records from HALD." ; schema1:url . kgr:hald.browser a schema1:GraphicalInterface ; rdfs:label "HALD Web Interface" ; dcterms:description "Interactive web interface for searching, browsing, and exploring HALD." ; schema1:url . kgr:hald.entities.csv a schema1:Product ; rdfs:label "HALD Neo4j Entities" ; dcterms:description "Version 6 CSV file containing entity rows for loading HALD into Neo4j." ; schema1:url . kgr:hald.entity-info.json a schema1:Product ; rdfs:label "HALD Entity Info" ; dcterms:description "Version 6 JSON file containing entity-level metadata extracted for HALD." ; schema1:url . kgr:hald.literature-info.json a schema1:Product ; rdfs:label "HALD Literature Info" ; dcterms:description "Version 6 JSON file containing literature metadata for the HALD corpus." ; schema1:url . kgr:hald.longevity-biomarkers.json a schema1:Product ; rdfs:label "HALD Longevity Biomarkers" ; dcterms:description "Version 6 JSON file containing longevity biomarker records from HALD." ; schema1:url . kgr:hald.relation-info.json a schema1:GraphProduct ; rdfs:label "HALD Relation Info" ; dcterms:description "Version 6 JSON file containing relation triples extracted for HALD." ; schema1:url . kgr:hald.roles.csv a schema1:Product ; rdfs:label "HALD Neo4j Roles" ; dcterms:description "Version 6 CSV file containing relationship rows for loading HALD into Neo4j." ; schema1:url . kgr:hrpimp.web a schema1:GraphicalInterface ; rdfs:label "Interactome Atlas Web Portal" ; dcterms:description "Web interface for browsing and exploring the Human Reference Interactome" ; schema1:url . kgr:hubmap.human_reference_atlas a schema1:Product ; rdfs:label "Human Reference Atlas" ; dcterms:description "Human Reference Atlas providing atlas data and reference functionality" ; schema1:url . kgr:human-proteome-map.raw-data a schema1:Product ; rdfs:label "Human Proteome Map Raw Data (PXD000561)" ; dcterms:description "Raw LC-MS/MS data for the draft map of the human proteome, deposited in the PRIDE Archive as PXD000561 (about 2,200 Thermo RAW files from LTQ Orbitrap Elite and Velos instruments, with Proteome Discoverer MSF result files, SDRF sample metadata and a README)." ; schema1:url . kgr:humancyc.downloads a schema1:Product ; rdfs:label "HumanCyc Data Downloads" ; dcterms:description "Downloadable HumanCyc Pathway/Genome Database (PGDB) data, including pathways, reactions, enzymes, and compounds, available through the BioCyc download services." ; schema1:url . kgr:humancyc.portal a schema1:GraphicalInterface ; rdfs:label "HumanCyc Web Portal" ; dcterms:description "Web interface for browsing and searching human metabolic pathways, genes, enzymes, reactions, and compounds within the BioCyc Pathway Tools environment." ; schema1:url . kgr:ickg.graph-data a schema1:GraphProduct ; rdfs:label "ICKG graph data" ; dcterms:description "Immune cell type-specific node and relationship CSV files for ICKG, including T cell, NK cell, and B cell graph exports." ; schema1:url . kgr:identifier-mappings.graph a schema1:GraphProduct ; rdfs:label "ID Mappings Graph" ; dcterms:description "Mappings between Wikidata entities and external identifiers, extracted and represented as RDF using standard RDF predicates" ; schema1:url . kgr:identifier-mappings.sparql a schema1:ProgrammingInterface ; rdfs:label "ID Mappings SPARQL" ; dcterms:description "SPARQL endpoint for ID Mappings" ; schema1:url . kgr:identifier-mappings.tpf a schema1:ProgrammingInterface ; rdfs:label "ID Mappings TPF" ; dcterms:description "Triple Pattern Fragments endpoint for ID Mappings" ; schema1:url . kgr:ikraph.code a schema1:ProcessProduct ; rdfs:label "iKraph Code" ; dcterms:description "Code for named entity recognition, relation extraction, and drug repurposing in assembly and analysis of iKraph" ; schema1:url . kgr:ikraph.graph a schema1:GraphProduct ; rdfs:label "iKraph graph metadata" ; dcterms:description "Graph metadata for iKraph, including a list of relations, entity type-specific metadata, data sources, and drug repurposing predictions." ; schema1:url . kgr:ikraph.graphdata a schema1:GraphProduct ; rdfs:label "iKraph graph data" ; dcterms:description "Complete graph data for iKraph with all entities and relations extracted from PubMed abstracts" ; schema1:url . kgr:ikraph.site a schema1:GraphicalInterface ; rdfs:label "BioKDE" ; dcterms:description "Biomedical Knowledge Discovery Engine. Interface for iKraph with search, visualization, and exploration capabilities." ; schema1:url . kgr:imex.downloads a schema1:Product ; rdfs:label "IMEx Downloads" ; dcterms:description "IMEx interaction downloads distributed through IntAct in PSI-MI XML and MITAB formats." ; schema1:url . kgr:imex.portal a schema1:GraphicalInterface ; rdfs:label "IMEx Portal" ; dcterms:description "Search interface for the shared IMEx molecular interaction dataset." ; schema1:url . kgr:imodulondb.imodulonminer a schema1:Product ; rdfs:label "iModulonMiner Pipeline" ; dcterms:description "Computational pipeline for gathering publicly available RNA-seq data, aligning reads, performing quality control, computing iModulons using independent component analysis, and formatting dashboard files. Enables users to generate their own iModulon decompositions from transcriptomic datasets." ; schema1:url . kgr:imodulondb.modulome_workflow a schema1:Product ; rdfs:label "Modulome Workflow" ; dcterms:description "Modulome workflow for scraping publicly available data for an organism, aligning reads, quality control, and computing iModulons. Used to expand iModulonDB across the prokaryotic evolutionary tree by processing data from the Sequence Read Archive." ; schema1:url . kgr:interpro.interpro2go a schema1:MappingProduct ; rdfs:label "InterPro to GO Mappings" ; dcterms:description "Mappings between InterPro entries and Gene Ontology (GO) terms" ; schema1:url . kgr:iptmnet.protein a schema1:Product ; rdfs:label "iPTMnet Protein Table" ; dcterms:description "Current iPTMnet protein table with UniProt accessions, names, organism labels, and reviewed/unreviewed status." ; schema1:url . kgr:jpost.protein a schema1:Product ; rdfs:label "jPOSTdb Identified Protein Data" ; dcterms:description "jPOSTdb identified protein table from the NBDC LSDB Archive, with UniProt accession, symbol, name, protein type and peptide and PSM counts for reanalyzed datasets (about 12 MB, file dated 2021-07-29)." ; schema1:url . kgr:jpost.psm a schema1:Product ; rdfs:label "jPOSTdb PSM Peptide Data" ; dcterms:description "jPOSTdb peptide spectrum match (PSM) table from the NBDC LSDB Archive, with peptide sequence, UniProt accession, experimental and calculated m/z, charge and jPOST score (about 68 MB, file dated 2021-07-29)." ; schema1:url . kgr:kg-bioportal.browser a schema1:GraphicalInterface ; rdfs:label "KG-Bioportal Graph Browser" ; dcterms:description "Browsable listing of every KG-Bioportal graph, with node and edge counts, transform status, and a download link for each. This is the canonical index of the transforms; KG-Registry does not mirror the full inventory." ; schema1:url . kgr:kg-bioportal.graphs a schema1:GraphProduct ; rdfs:label "KG-Bioportal KGX Graphs" ; dcterms:description "KGX TSV graphs for all successfully transformed BioPortal ontologies, published as one gzipped tar archive per ontology on the latest release. Individual archives are at https://github.com/ncbo/kg-bioportal/releases/latest/download/.tar.gz and contain _nodes.tsv and _edges.tsv." ; schema1:url . kgr:kg-bioportal.manifest a schema1:Product ; rdfs:label "KG-Bioportal Transform Manifest" ; dcterms:description "Manifest of every transform attempt, giving the BioPortal acronym, status, node and edge counts, source submission, and release download URL for each ontology. Refreshed with each monthly transform run." ; schema1:url . kgr:kg-fm.abstract_text a schema1:Product ; rdfs:label "KG-FM Abstract Text Files" ; dcterms:description "Zipped abstract-text corpora for COF, HOF, and MOF literature used as input to KG-FM extraction and graph construction." ; schema1:url . kgr:kg-fm.graph a schema1:GraphProduct ; rdfs:label "KG-FM Neo4j Knowledge Graph" ; dcterms:description "Neo4j framework-materials knowledge graph constructed from Web of Science abstracts and publication metadata with LLM-assisted information extraction. The paper reports 2.53 million nodes and 4.01 million relationships covering materials, properties, structures, applications, and related literature." ; schema1:url . kgr:kg-fm.json_extractions a schema1:Product ; rdfs:label "KG-FM JSON Extraction Files" ; dcterms:description "Zipped JSON extraction files for COF, HOF, and MOF literature, produced from framework-material abstracts and used to import KG-FM nodes and relationships." ; schema1:url . kgr:kg-microbe.graph.uniprot a schema1:GraphProduct ; rdfs:label "KG-Microbe UniProt microbe transform" ; dcterms:description "UniProt proteins from microbes, as graph nodes and edges" ; schema1:url . kgr:kg-monarch.phenio.semsql a schema1:Product ; rdfs:label "Phenio SQLite (SemSQL)" ; dcterms:description "Phenio SQLite database in SemSQL format for ontology queries" ; schema1:url . kgr:kg-predict.ad_nct_evidence a schema1:Product ; rdfs:label "AD National Clinical Trial Evidence" ; dcterms:description "Alzheimer's disease National Clinical Trial evidence file used with the KG-Predict case study" ; schema1:url . kgr:kg-predict.ad_predictions a schema1:Product ; rdfs:label "AD Drug Predictions" ; dcterms:description "Alzheimer's disease case study drug repurposing predictions" ; schema1:url . kgr:lipro.owl a schema1:OntologyProduct ; rdfs:label "Lipid Ontology OWL product" ; dcterms:description "OWL-DL edition of the Lipid Ontology (LiPrO), representing the LIPIDMAPS nomenclature classification. Served as an archived mirror via AberOWL; the original OBO PURL no longer resolves." ; schema1:url . kgr:lsdb-archive.fantom5 a schema1:Product ; rdfs:label "FANTOM5 (LSDB Archive)" ; dcterms:description "LSDB Archive copy of FANTOM5 data files, in dated releases (2015 to 2019), licensed CC BY 4.0." ; schema1:url . kgr:lsdb-archive.inoh a schema1:Product ; rdfs:label "INOH (LSDB Archive)" ; dcterms:description "LSDB Archive copy of the INOH pathway database, in dated releases (2011 to 2017), licensed CC BY-SA 2.1 Japan." ; schema1:url . kgr:lsdb-archive.kegg-medicus a schema1:Product ; rdfs:label "KEGG MEDICUS (LSDB Archive)" ; dcterms:description "LSDB Archive copy of KEGG MEDICUS, the KEGG resource for drugs, diseases and drug labels, in dated releases (2014 to 2023), licensed CC BY-SA 4.0." ; schema1:url . kgr:markerdb.proteins.tsv a schema1:Product ; rdfs:label "MarkerDB Protein Biomarkers TSV" ; dcterms:description "TSV export of MarkerDB protein biomarkers with associated conditions and concentration data." ; schema1:url . kgr:maude.data a schema1:Product ; rdfs:label "MAUDE Database and Downloadable Data Files" ; dcterms:description "The MAUDE medical device adverse event reports, accessible through the searchable web database and as downloadable data files, including via the openFDA device adverse event API endpoint." ; schema1:url . kgr:maudekg.graph a schema1:GraphProduct ; rdfs:label "FDA MAUDE Adverse Event Knowledge Graph" ; dcterms:description "RDF knowledge graph constructed from FDA MAUDE medical-device adverse event reports using standardized FDA product codes." ; schema1:url . kgr:medgen.hpo-history a schema1:Product ; rdfs:label "HPO CUI History" ; dcterms:description "History file tracking changes to HPO term mappings to CUIs" ; schema1:url . kgr:medgen.hpo-mapping a schema1:MappingProduct ; rdfs:label "MedGen HPO Mapping" ; dcterms:description "Mappings between MedGen and Human Phenotype Ontology terms with gzip compression" ; schema1:url . kgr:medgen.merged a schema1:Product ; rdfs:label "MERGED (Merged CUIs)" ; dcterms:description "Merged CUI mappings showing concept consolidations with gzip compression" ; schema1:url . kgr:medgen.mondo-history a schema1:Product ; rdfs:label "Mondo CUI History" ; dcterms:description "History file tracking changes to Mondo term mappings to CUIs" ; schema1:url . kgr:medgen.pubmed-links a schema1:Product ; rdfs:label "MedGen PubMed Links" ; dcterms:description "Links between MedGen concepts and PubMed articles with gzip compression" ; schema1:url . kgr:medi.ema a schema1:Product ; rdfs:label "MeDI EMA Extract" ; dcterms:description "EMA regulatory source extract from the medic v1.0.1 release" ; schema1:url . kgr:medi.orangebook a schema1:Product ; rdfs:label "MeDI Orange Book Extract" ; dcterms:description "FDA Orange Book regulatory source extract from the medic v1.0.1 release" ; schema1:url . kgr:medi.pmda a schema1:Product ; rdfs:label "MeDI PMDA Extract" ; dcterms:description "PMDA regulatory source extract from the medic v1.0.1 release" ; schema1:url . kgr:metabolights.metabolites a schema1:Product ; rdfs:label "MetaboLights Reference Metabolite List" ; dcterms:description "JSON list of the ChEBI identifiers of metabolites in the MetaboLights reference layer, last updated in October 2020." ; schema1:url . kgr:metabolights.study-metabolites a schema1:MappingProduct ; rdfs:label "MetaboLights Study to Metabolite Mapping" ; dcterms:description "JSON mapping from MetaboLights studies to the metabolites (ChEBI identifiers) reported in them, last updated in October 2020." ; schema1:url . kgr:mrbase.api a schema1:ProgrammingInterface ; rdfs:label "MR-Base REST API" ; dcterms:description "RESTful API providing programmatic access to harmonized GWAS summary statistics, LD proxy lookup, instruments, and MR result generation, now served by the OpenGWAS API (successor to the retired api.mrbase.org endpoint)" ; schema1:url . kgr:mrbase.phewas a schema1:ProgrammingInterface ; rdfs:label "MR-Base PheWAS Application" ; dcterms:description "Phenome-wide association study (PheWAS) functionality enabling exploration of SNP-trait associations across the OpenGWAS database, now delivered through the OpenGWAS API PheWAS endpoint (successor to the retired MR-Base PheWAS web interface)" ; schema1:url . kgr:mrbase.twosamplemr a schema1:ProgrammingInterface ; rdfs:label "TwoSampleMR R Package" ; dcterms:description "TwoSampleMR R package supporting data extraction, harmonization, instrument selection, MR analysis methods, diagnostics, and reproducible code generation" ; schema1:url . kgr:mrbase.twosamplemr.docs a schema1:DocumentationProduct ; rdfs:label "TwoSampleMR Documentation" ; dcterms:description "TwoSampleMR package documentation with function reference, usage guides, and methodological notes" ; schema1:url . kgr:mrbase.webapp a schema1:GraphicalInterface ; rdfs:label "MR-Base Web Application" ; dcterms:description "Two-sample Mendelian randomization analysis tooling for curated GWAS summary datasets, provided through the TwoSampleMR R package and its documentation site (successor to the retired MR-Base Shiny web application)" ; schema1:url . kgr:mydisease.code a schema1:ProcessProduct ; rdfs:label "MyDisease.info Source Code" ; dcterms:description "Source code for the MyDisease.info data parsers and web service, built with the BioThings SDK." ; schema1:url . kgr:mygene.code a schema1:ProcessProduct ; rdfs:label "MyGene.info Source Code" ; dcterms:description "Source code of the MyGene.info web service and its data plugins, built with the BioThings SDK." ; schema1:url . kgr:myvariant.code a schema1:ProcessProduct ; rdfs:label "MyVariant.info Source Code" ; dcterms:description "Source code for the MyVariant.info service, including the BioThings data plugins and parsers that build the variant index." ; schema1:url . kgr:name-resolver.api a schema1:ProgrammingInterface ; rdfs:label "Name Resolver API (RENCI)" ; dcterms:description "RENCI-hosted Name Resolver REST API (version 1.7.0 when checked) with lookup, autocomplete, bulk-lookup, synonyms and reverse_lookup endpoints for mapping biomedical concept names to normalized CURIEs, documented with an OpenAPI/Swagger page." ; schema1:url . kgr:name-resolver.translator-api a schema1:ProgrammingInterface ; rdfs:label "Name Resolver API (Translator production)" ; dcterms:description "NCATS Translator production deployment of the Name Resolver REST API (version 1.4.5 when checked), offering the same lookup, synonyms and reverse lookup endpoints for Translator tools and user interfaces." ; schema1:url . kgr:nasa-gesdisc-kg.graph a schema1:GraphProduct ; rdfs:label "NASA-GESDISC-KG Graph" ; dcterms:description "The NASA Knowledge Graph Dataset (NASA-GESDISC-KG), an RDF knowledge graph integrating NASA satellite datasets, scientific publications, instruments, platforms, projects, data centers, and science keywords, derived from NASA GES DISC data holdings." ; schema1:url . kgr:ncbigene.gene2ensembl a schema1:MappingProduct ; rdfs:label "Gene to Ensembl Mapping" ; dcterms:description "Gene to Ensembl mapping data providing cross-references between NCBI Gene and Ensembl gene identifiers" ; schema1:url . kgr:ncbigene.gene2go a schema1:MappingProduct ; rdfs:label "Gene to GO Mapping" ; dcterms:description "Gene to Gene Ontology mapping data providing functional annotations for genes" ; schema1:url . kgr:ncbigene.gene2pubmed a schema1:MappingProduct ; rdfs:label "Gene to PubMed Mapping" ; dcterms:description "Gene to PubMed mapping data providing literature references associated with genes" ; schema1:url . kgr:ncbigene.gene2refseq a schema1:MappingProduct ; rdfs:label "Gene to RefSeq Mapping" ; dcterms:description "Gene to RefSeq mapping data providing links between gene records and RefSeq sequence identifiers" ; schema1:url . kgr:ndcd.api a schema1:ProgrammingInterface ; rdfs:label "NDC API" ; dcterms:description "REST API providing programmatic access to National Drug Code data through the openFDA platform" ; schema1:url . kgr:ndfrt.rxnorm a schema1:Product ; rdfs:label "VANDF in RxNorm" ; dcterms:description "VANDF data integrated into RxNorm" ; schema1:url . kgr:ndfrt.umls a schema1:Product ; rdfs:label "VANDF in UMLS" ; dcterms:description "VANDF drug terminology data distributed through UMLS Metathesaurus" ; schema1:url . kgr:nextprot.api a schema1:ProgrammingInterface ; rdfs:label "neXtProt API" ; dcterms:description "neXtProt REST API for programmatic access to human protein annotations and entry data." ; schema1:url . kgr:nextprot.downloads a schema1:Product ; rdfs:label "neXtProt Downloads" ; dcterms:description "neXtProt downloadable human protein data, including flat files and RDF data products for local reuse." ; schema1:url . kgr:nextprot.portal a schema1:GraphicalInterface ; rdfs:label "neXtProt Web Platform" ; dcterms:description "neXtProt web platform for searching and browsing curated human protein entries, proteomics evidence, variants, expression, interactions, localization, and functional annotations." ; schema1:url . kgr:nextprot.sparql a schema1:ProgrammingInterface ; rdfs:label "neXtProt SPARQL Endpoint" ; dcterms:description "neXtProt SPARQL endpoint for querying RDF representations of human protein knowledge." ; schema1:url . kgr:nih-era.reporting-docs a schema1:DocumentationProduct ; rdfs:label "eRA Reporting and Analytics Modules" ; dcterms:description "Description of the eRA reporting and analytics modules, including the public RePORT and RePORTER tools and the internal QVR, SPIRES and iRePORT modules built on IMPAC II data." ; schema1:url . kgr:nihreporter.abstracts a schema1:Product ; rdfs:label "NIH-Funded Project Abstracts" ; dcterms:description "Database of abstracts linked to NIH-funded research projects" ; schema1:url . kgr:nihreporter.api a schema1:ProgrammingInterface ; rdfs:label "NIH Reporter API" ; dcterms:description "Public REST API (no key required) returning JSON for searching projects (v2 projects endpoint) and project-linked publications" ; schema1:url . kgr:nihreporter.crisp a schema1:Product ; rdfs:label "NIH Reporter Legacy CRISP Data" ; dcterms:description "Legacy CRISP (Computer Retrieval of Information on Scientific Projects) project and abstract data for fiscal years 1970 to 2009, in CSV and XML." ; schema1:url . kgr:nihreporter.portal a schema1:GraphicalInterface ; rdfs:label "NIH Reporter Web Portal" ; dcterms:description "Web-based search interface for exploring NIH-funded research projects with advanced search capabilities" ; schema1:url . kgr:nihreporter.projects a schema1:Product ; rdfs:label "NIH Reporter Exporter Projects" ; dcterms:description "Bulk download of NIH research project data in structured format" ; schema1:url . kgr:node-normalizer.api a schema1:ProgrammingInterface ; rdfs:label "Node Normalization API (RENCI)" ; dcterms:description "Node Normalization REST API hosted by RENCI (OpenAPI version 2.5.1, TRAPI 1.5 annotate_nodes operation). Endpoints include /get_normalized_nodes, /get_semantic_types, /get_curie_prefixes, /get_allowed_conflations, /get_setid and TRAPI /query and /asyncquery. The OpenAPI servers block labels this deployment development maturity." ; schema1:url . kgr:node-normalizer.api.translator a schema1:ProgrammingInterface ; rdfs:label "Node Normalization API (Translator)" ; dcterms:description "Node Normalization REST API deployed on NCATS Translator infrastructure." ; schema1:url . kgr:obo-db-ingest.bigg.compartment.json a schema1:Product ; rdfs:label "bigg.compartment OBO Graph JSON" ; dcterms:description "bigg.compartment OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.bigg.compartment.obo a schema1:Product ; rdfs:label "bigg.compartment OBO" ; dcterms:description "bigg.compartment OBO" ; schema1:url . kgr:obo-db-ingest.bigg.compartment.owl a schema1:Product ; rdfs:label "bigg.compartment OWL" ; dcterms:description "bigg.compartment OWL" ; schema1:url . kgr:obo-db-ingest.bigg.compartment.tsv a schema1:Product ; rdfs:label "bigg.compartment Nodes TSV" ; dcterms:description "bigg.compartment Nodes TSV" ; schema1:url . kgr:obo-db-ingest.bigg.metabolite.json a schema1:Product ; rdfs:label "bigg.metabolite OBO Graph JSON" ; dcterms:description "bigg.metabolite OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.bigg.metabolite.obo a schema1:Product ; rdfs:label "bigg.metabolite OBO" ; dcterms:description "bigg.metabolite OBO" ; schema1:url . kgr:obo-db-ingest.bigg.metabolite.owl a schema1:Product ; rdfs:label "bigg.metabolite OWL" ; dcterms:description "bigg.metabolite OWL" ; schema1:url . kgr:obo-db-ingest.bigg.metabolite.tsv a schema1:Product ; rdfs:label "bigg.metabolite Nodes TSV" ; dcterms:description "bigg.metabolite Nodes TSV" ; schema1:url . kgr:obo-db-ingest.bigg.model.json a schema1:Product ; rdfs:label "bigg.model OBO Graph JSON" ; dcterms:description "bigg.model OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.bigg.model.obo a schema1:Product ; rdfs:label "bigg.model OBO" ; dcterms:description "bigg.model OBO" ; schema1:url . kgr:obo-db-ingest.bigg.model.owl a schema1:Product ; rdfs:label "bigg.model OWL" ; dcterms:description "bigg.model OWL" ; schema1:url . kgr:obo-db-ingest.bigg.model.tsv a schema1:Product ; rdfs:label "bigg.model Nodes TSV" ; dcterms:description "bigg.model Nodes TSV" ; schema1:url . kgr:obo-db-ingest.bigg.reaction.json a schema1:Product ; rdfs:label "bigg.reaction OBO Graph JSON" ; dcterms:description "bigg.reaction OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.bigg.reaction.obo a schema1:Product ; rdfs:label "bigg.reaction OBO" ; dcterms:description "bigg.reaction OBO" ; schema1:url . kgr:obo-db-ingest.bigg.reaction.owl a schema1:Product ; rdfs:label "bigg.reaction OWL" ; dcterms:description "bigg.reaction OWL" ; schema1:url . kgr:obo-db-ingest.bigg.reaction.sssom.tsv a schema1:MappingProduct ; rdfs:label "bigg.reaction SSSOM" ; dcterms:description "bigg.reaction SSSOM" ; schema1:url . kgr:obo-db-ingest.bigg.reaction.tsv a schema1:Product ; rdfs:label "bigg.reaction Nodes TSV" ; dcterms:description "bigg.reaction Nodes TSV" ; schema1:url . kgr:obo-db-ingest.ccle.json a schema1:Product ; rdfs:label "ccle OBO Graph JSON" ; dcterms:description "ccle OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.ccle.obo a schema1:Product ; rdfs:label "ccle OBO" ; dcterms:description "ccle OBO" ; schema1:url . kgr:obo-db-ingest.ccle.owl a schema1:Product ; rdfs:label "ccle OWL" ; dcterms:description "ccle OWL" ; schema1:url . kgr:obo-db-ingest.ccle.sssom.tsv a schema1:MappingProduct ; rdfs:label "ccle SSSOM" ; dcterms:description "ccle SSSOM" ; schema1:url . kgr:obo-db-ingest.ccle.tsv a schema1:Product ; rdfs:label "ccle Nodes TSV" ; dcterms:description "ccle Nodes TSV" ; schema1:url . kgr:obo-db-ingest.cgnc.json a schema1:Product ; rdfs:label "cgnc OBO Graph JSON" ; dcterms:description "cgnc OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.cgnc.obo a schema1:Product ; rdfs:label "cgnc OBO" ; dcterms:description "cgnc OBO" ; schema1:url . kgr:obo-db-ingest.cgnc.owl a schema1:Product ; rdfs:label "cgnc OWL" ; dcterms:description "cgnc OWL" ; schema1:url . kgr:obo-db-ingest.cgnc.sssom.tsv a schema1:MappingProduct ; rdfs:label "cgnc SSSOM" ; dcterms:description "cgnc SSSOM" ; schema1:url . kgr:obo-db-ingest.cgnc.tsv a schema1:Product ; rdfs:label "cgnc Nodes TSV" ; dcterms:description "cgnc Nodes TSV" ; schema1:url . kgr:obo-db-ingest.chembl.compound.json a schema1:Product ; rdfs:label "chembl.compound OBO Graph JSON" ; dcterms:description "chembl.compound OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.chembl.compound.obo a schema1:Product ; rdfs:label "chembl.compound OBO" ; dcterms:description "chembl.compound OBO" ; schema1:url . kgr:obo-db-ingest.chembl.compound.owl a schema1:Product ; rdfs:label "chembl.compound OWL" ; dcterms:description "chembl.compound OWL" ; schema1:url . kgr:obo-db-ingest.chembl.compound.sssom.tsv a schema1:MappingProduct ; rdfs:label "chembl.compound SSSOM" ; dcterms:description "chembl.compound SSSOM" ; schema1:url . kgr:obo-db-ingest.chembl.compound.tsv a schema1:Product ; rdfs:label "chembl.compound Nodes TSV" ; dcterms:description "chembl.compound Nodes TSV" ; schema1:url . kgr:obo-db-ingest.chembl.target.json a schema1:Product ; rdfs:label "chembl.target OBO Graph JSON" ; dcterms:description "chembl.target OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.chembl.target.obo a schema1:Product ; rdfs:label "chembl.target OBO" ; dcterms:description "chembl.target OBO" ; schema1:url . kgr:obo-db-ingest.chembl.target.owl a schema1:Product ; rdfs:label "chembl.target OWL" ; dcterms:description "chembl.target OWL" ; schema1:url . kgr:obo-db-ingest.chembl.target.sssom.tsv a schema1:MappingProduct ; rdfs:label "chembl.target SSSOM" ; dcterms:description "chembl.target SSSOM" ; schema1:url . kgr:obo-db-ingest.chembl.target.tsv a schema1:Product ; rdfs:label "chembl.target Nodes TSV" ; dcterms:description "chembl.target Nodes TSV" ; schema1:url . kgr:obo-db-ingest.civic.gid.json a schema1:Product ; rdfs:label "civic.gid OBO Graph JSON" ; dcterms:description "civic.gid OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.civic.gid.obo a schema1:Product ; rdfs:label "civic.gid OBO" ; dcterms:description "civic.gid OBO" ; schema1:url . kgr:obo-db-ingest.civic.gid.owl a schema1:Product ; rdfs:label "civic.gid OWL" ; dcterms:description "civic.gid OWL" ; schema1:url . kgr:obo-db-ingest.civic.gid.sssom.tsv a schema1:MappingProduct ; rdfs:label "civic.gid SSSOM" ; dcterms:description "civic.gid SSSOM" ; schema1:url . kgr:obo-db-ingest.civic.gid.tsv a schema1:Product ; rdfs:label "civic.gid Nodes TSV" ; dcterms:description "civic.gid Nodes TSV" ; schema1:url . kgr:obo-db-ingest.clinicaltrialsgov.json a schema1:Product ; rdfs:label "clinicaltrials OBO Graph JSON" ; dcterms:description "clinicaltrials OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.clinicaltrialsgov.obo a schema1:Product ; rdfs:label "clinicaltrials OBO" ; dcterms:description "clinicaltrials OBO" ; schema1:url . kgr:obo-db-ingest.clinicaltrialsgov.owl a schema1:Product ; rdfs:label "clinicaltrials OWL" ; dcterms:description "clinicaltrials OWL" ; schema1:url . kgr:obo-db-ingest.clinicaltrialsgov.sssom.tsv a schema1:MappingProduct ; rdfs:label "clinicaltrials SSSOM" ; dcterms:description "clinicaltrials SSSOM" ; schema1:url . kgr:obo-db-ingest.clinicaltrialsgov.tsv a schema1:Product ; rdfs:label "clinicaltrials Nodes TSV" ; dcterms:description "clinicaltrials Nodes TSV" ; schema1:url . kgr:obo-db-ingest.complexportal.json a schema1:Product ; rdfs:label "complexportal OBO Graph JSON" ; dcterms:description "complexportal OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.complexportal.obo a schema1:Product ; rdfs:label "complexportal OBO" ; dcterms:description "complexportal OBO" ; schema1:url . kgr:obo-db-ingest.complexportal.owl a schema1:Product ; rdfs:label "complexportal OWL" ; dcterms:description "complexportal OWL" ; schema1:url . kgr:obo-db-ingest.complexportal.sssom.tsv a schema1:MappingProduct ; rdfs:label "complexportal SSSOM" ; dcterms:description "complexportal SSSOM" ; schema1:url . kgr:obo-db-ingest.complexportal.tsv a schema1:Product ; rdfs:label "complexportal Nodes TSV" ; dcterms:description "complexportal Nodes TSV" ; schema1:url . kgr:obo-db-ingest.cpt.json a schema1:Product ; rdfs:label "cpt OBO Graph JSON" ; dcterms:description "cpt OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.cpt.obo a schema1:Product ; rdfs:label "cpt OBO" ; dcterms:description "cpt OBO" ; schema1:url . kgr:obo-db-ingest.cpt.owl a schema1:Product ; rdfs:label "cpt OWL" ; dcterms:description "cpt OWL" ; schema1:url . kgr:obo-db-ingest.cpt.sssom.tsv a schema1:MappingProduct ; rdfs:label "cpt SSSOM" ; dcterms:description "cpt SSSOM" ; schema1:url . kgr:obo-db-ingest.cpt.tsv a schema1:Product ; rdfs:label "cpt Nodes TSV" ; dcterms:description "cpt Nodes TSV" ; schema1:url . kgr:obo-db-ingest.credit.json a schema1:Product ; rdfs:label "credit OBO Graph JSON" ; dcterms:description "credit OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.credit.obo a schema1:Product ; rdfs:label "credit OBO" ; dcterms:description "credit OBO" ; schema1:url . kgr:obo-db-ingest.credit.owl a schema1:Product ; rdfs:label "credit OWL" ; dcterms:description "credit OWL" ; schema1:url . kgr:obo-db-ingest.credit.sssom.tsv a schema1:MappingProduct ; rdfs:label "credit SSSOM" ; dcterms:description "credit SSSOM" ; schema1:url . kgr:obo-db-ingest.credit.tsv a schema1:Product ; rdfs:label "credit Nodes TSV" ; dcterms:description "credit Nodes TSV" ; schema1:url . kgr:obo-db-ingest.cvx.json a schema1:Product ; rdfs:label "cvx OBO Graph JSON" ; dcterms:description "cvx OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.cvx.obo a schema1:Product ; rdfs:label "cvx OBO" ; dcterms:description "cvx OBO" ; schema1:url . kgr:obo-db-ingest.cvx.owl a schema1:Product ; rdfs:label "cvx OWL" ; dcterms:description "cvx OWL" ; schema1:url . kgr:obo-db-ingest.cvx.sssom.tsv a schema1:MappingProduct ; rdfs:label "cvx SSSOM" ; dcterms:description "cvx SSSOM" ; schema1:url . kgr:obo-db-ingest.cvx.tsv a schema1:Product ; rdfs:label "cvx Nodes TSV" ; dcterms:description "cvx Nodes TSV" ; schema1:url . kgr:obo-db-ingest.depmap.json a schema1:Product ; rdfs:label "depmap OBO Graph JSON" ; dcterms:description "depmap OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.depmap.obo a schema1:Product ; rdfs:label "depmap OBO" ; dcterms:description "depmap OBO" ; schema1:url . kgr:obo-db-ingest.depmap.owl a schema1:Product ; rdfs:label "depmap OWL" ; dcterms:description "depmap OWL" ; schema1:url . kgr:obo-db-ingest.depmap.sssom.tsv a schema1:MappingProduct ; rdfs:label "depmap SSSOM" ; dcterms:description "depmap SSSOM" ; schema1:url . kgr:obo-db-ingest.depmap.tsv a schema1:Product ; rdfs:label "depmap Nodes TSV" ; dcterms:description "depmap Nodes TSV" ; schema1:url . kgr:obo-db-ingest.dictybase.gene.json a schema1:Product ; rdfs:label "dictybase.gene OBO Graph JSON" ; dcterms:description "dictybase.gene OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.dictybase.gene.obo a schema1:Product ; rdfs:label "dictybase.gene OBO" ; dcterms:description "dictybase.gene OBO" ; schema1:url . kgr:obo-db-ingest.dictybase.gene.owl a schema1:Product ; rdfs:label "dictybase.gene OWL" ; dcterms:description "dictybase.gene OWL" ; schema1:url . kgr:obo-db-ingest.dictybase.gene.tsv a schema1:Product ; rdfs:label "dictybase.gene Nodes TSV" ; dcterms:description "dictybase.gene Nodes TSV" ; schema1:url . kgr:obo-db-ingest.drugcentral.json a schema1:Product ; rdfs:label "drugcentral OBO Graph JSON" ; dcterms:description "drugcentral OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.drugcentral.obo a schema1:Product ; rdfs:label "drugcentral OBO" ; dcterms:description "drugcentral OBO" ; schema1:url . kgr:obo-db-ingest.drugcentral.owl a schema1:Product ; rdfs:label "drugcentral OWL" ; dcterms:description "drugcentral OWL" ; schema1:url . kgr:obo-db-ingest.drugcentral.sssom.tsv a schema1:MappingProduct ; rdfs:label "drugcentral SSSOM" ; dcterms:description "drugcentral SSSOM" ; schema1:url . kgr:obo-db-ingest.drugcentral.tsv a schema1:Product ; rdfs:label "drugcentral Nodes TSV" ; dcterms:description "drugcentral Nodes TSV" ; schema1:url . kgr:obo-db-ingest.ec.json a schema1:Product ; rdfs:label "ec OBO Graph JSON" ; dcterms:description "ec OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.ec.obo a schema1:Product ; rdfs:label "ec OBO" ; dcterms:description "ec OBO" ; schema1:url . kgr:obo-db-ingest.ec.owl a schema1:Product ; rdfs:label "ec OWL" ; dcterms:description "ec OWL" ; schema1:url . kgr:obo-db-ingest.ec.sssom.tsv a schema1:MappingProduct ; rdfs:label "ec SSSOM" ; dcterms:description "ec SSSOM" ; schema1:url . kgr:obo-db-ingest.ec.tsv a schema1:Product ; rdfs:label "ec Nodes TSV" ; dcterms:description "ec Nodes TSV" ; schema1:url . kgr:obo-db-ingest.flybase.json a schema1:Product ; rdfs:label "flybase OBO Graph JSON" ; dcterms:description "flybase OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.flybase.obo a schema1:Product ; rdfs:label "flybase OBO" ; dcterms:description "flybase OBO" ; schema1:url . kgr:obo-db-ingest.flybase.owl a schema1:Product ; rdfs:label "flybase OWL" ; dcterms:description "flybase OWL" ; schema1:url . kgr:obo-db-ingest.flybase.tsv a schema1:Product ; rdfs:label "flybase Nodes TSV" ; dcterms:description "flybase Nodes TSV" ; schema1:url . kgr:obo-db-ingest.gard.json a schema1:Product ; rdfs:label "gard OBO Graph JSON" ; dcterms:description "gard OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.gard.obo a schema1:Product ; rdfs:label "gard OBO" ; dcterms:description "gard OBO" ; schema1:url . kgr:obo-db-ingest.gard.owl a schema1:Product ; rdfs:label "gard OWL" ; dcterms:description "gard OWL" ; schema1:url . kgr:obo-db-ingest.gard.tsv a schema1:Product ; rdfs:label "gard Nodes TSV" ; dcterms:description "gard Nodes TSV" ; schema1:url . kgr:obo-db-ingest.geonames.feature.json a schema1:Product ; rdfs:label "geonames.feature OBO Graph JSON" ; dcterms:description "geonames.feature OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.geonames.feature.obo a schema1:Product ; rdfs:label "geonames.feature OBO" ; dcterms:description "geonames.feature OBO" ; schema1:url . kgr:obo-db-ingest.geonames.feature.owl a schema1:Product ; rdfs:label "geonames.feature OWL" ; dcterms:description "geonames.feature OWL" ; schema1:url . kgr:obo-db-ingest.geonames.feature.tsv a schema1:Product ; rdfs:label "geonames.feature Nodes TSV" ; dcterms:description "geonames.feature Nodes TSV" ; schema1:url . kgr:obo-db-ingest.geonames.json a schema1:Product ; rdfs:label "geonames OBO Graph JSON" ; dcterms:description "geonames OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.geonames.obo a schema1:Product ; rdfs:label "geonames OBO" ; dcterms:description "geonames OBO" ; schema1:url . kgr:obo-db-ingest.geonames.owl a schema1:Product ; rdfs:label "geonames OWL" ; dcterms:description "geonames OWL" ; schema1:url . kgr:obo-db-ingest.geonames.tsv a schema1:Product ; rdfs:label "geonames Nodes TSV" ; dcterms:description "geonames Nodes TSV" ; schema1:url . kgr:obo-db-ingest.goldbook.json a schema1:Product ; rdfs:label "goldbook OBO Graph JSON" ; dcterms:description "IUPAC Gold Book (Compendium of Chemical Terminology) OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.goldbook.obo a schema1:Product ; rdfs:label "goldbook OBO" ; dcterms:description "IUPAC Gold Book (Compendium of Chemical Terminology) OBO" ; schema1:url . kgr:obo-db-ingest.goldbook.owl a schema1:Product ; rdfs:label "goldbook OWL" ; dcterms:description "IUPAC Gold Book (Compendium of Chemical Terminology) OWL" ; schema1:url . kgr:obo-db-ingest.goldbook.sssom.tsv a schema1:MappingProduct ; rdfs:label "goldbook SSSOM" ; dcterms:description "IUPAC Gold Book (Compendium of Chemical Terminology) SSSOM" ; schema1:url . kgr:obo-db-ingest.goldbook.tsv a schema1:Product ; rdfs:label "goldbook Nodes TSV" ; dcterms:description "IUPAC Gold Book (Compendium of Chemical Terminology) Nodes TSV" ; schema1:url . kgr:obo-db-ingest.gtdb.json a schema1:Product ; rdfs:label "gtdb OBO Graph JSON" ; dcterms:description "gtdb OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.gtdb.obo a schema1:Product ; rdfs:label "gtdb OBO" ; dcterms:description "gtdb OBO" ; schema1:url . kgr:obo-db-ingest.gtdb.owl a schema1:Product ; rdfs:label "gtdb OWL" ; dcterms:description "gtdb OWL" ; schema1:url . kgr:obo-db-ingest.gtdb.sssom.tsv a schema1:MappingProduct ; rdfs:label "gtdb SSSOM" ; dcterms:description "gtdb SSSOM" ; schema1:url . kgr:obo-db-ingest.gtdb.tsv a schema1:Product ; rdfs:label "gtdb Nodes TSV" ; dcterms:description "gtdb Nodes TSV" ; schema1:url . kgr:obo-db-ingest.hgnc.genegroup.json a schema1:Product ; rdfs:label "hgnc.genegroup OBO Graph JSON" ; dcterms:description "hgnc.genegroup OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.hgnc.genegroup.obo a schema1:Product ; rdfs:label "hgnc.genegroup OBO" ; dcterms:description "hgnc.genegroup OBO" ; schema1:url . kgr:obo-db-ingest.hgnc.genegroup.owl a schema1:Product ; rdfs:label "hgnc.genegroup OWL" ; dcterms:description "hgnc.genegroup OWL" ; schema1:url . kgr:obo-db-ingest.hgnc.genegroup.tsv a schema1:Product ; rdfs:label "hgnc.genegroup Nodes TSV" ; dcterms:description "hgnc.genegroup Nodes TSV" ; schema1:url . kgr:obo-db-ingest.hgnc.json a schema1:Product ; rdfs:label "hgnc OBO Graph JSON" ; dcterms:description "hgnc OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.hgnc.obo a schema1:Product ; rdfs:label "hgnc OBO" ; dcterms:description "hgnc OBO" ; schema1:url . kgr:obo-db-ingest.hgnc.owl a schema1:Product ; rdfs:label "hgnc OWL" ; dcterms:description "hgnc OWL" ; schema1:url . kgr:obo-db-ingest.hgnc.sssom.tsv a schema1:MappingProduct ; rdfs:label "hgnc SSSOM" ; dcterms:description "hgnc SSSOM" ; schema1:url . kgr:obo-db-ingest.hgnc.tsv a schema1:Product ; rdfs:label "hgnc Nodes TSV" ; dcterms:description "hgnc Nodes TSV" ; schema1:url . kgr:obo-db-ingest.iana.mediatype.json a schema1:Product ; rdfs:label "iana.mediatype OBO Graph JSON" ; dcterms:description "IANA Media Types OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.iana.mediatype.obo a schema1:Product ; rdfs:label "iana.mediatype OBO" ; dcterms:description "IANA Media Types OBO" ; schema1:url . kgr:obo-db-ingest.iana.mediatype.owl a schema1:Product ; rdfs:label "iana.mediatype OWL" ; dcterms:description "IANA Media Types OWL" ; schema1:url . kgr:obo-db-ingest.iana.mediatype.sssom.tsv a schema1:MappingProduct ; rdfs:label "iana.mediatype SSSOM" ; dcterms:description "IANA Media Types SSSOM" ; schema1:url . kgr:obo-db-ingest.iana.mediatype.tsv a schema1:Product ; rdfs:label "iana.mediatype Nodes TSV" ; dcterms:description "IANA Media Types Nodes TSV" ; schema1:url . kgr:obo-db-ingest.icd10.json a schema1:Product ; rdfs:label "icd10 OBO Graph JSON" ; dcterms:description "icd10 OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.icd10.obo a schema1:Product ; rdfs:label "icd10 OBO" ; dcterms:description "icd10 OBO" ; schema1:url . kgr:obo-db-ingest.icd10.owl a schema1:Product ; rdfs:label "icd10 OWL" ; dcterms:description "icd10 OWL" ; schema1:url . kgr:obo-db-ingest.icd10.tsv a schema1:Product ; rdfs:label "icd10 Nodes TSV" ; dcterms:description "icd10 Nodes TSV" ; schema1:url . kgr:obo-db-ingest.icd11.json a schema1:Product ; rdfs:label "icd11 OBO Graph JSON" ; dcterms:description "icd11 OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.icd11.obo a schema1:Product ; rdfs:label "icd11 OBO" ; dcterms:description "icd11 OBO" ; schema1:url . kgr:obo-db-ingest.icd11.owl a schema1:Product ; rdfs:label "icd11 OWL" ; dcterms:description "icd11 OWL" ; schema1:url . kgr:obo-db-ingest.icd11.sssom.tsv a schema1:MappingProduct ; rdfs:label "icd11 SSSOM" ; dcterms:description "icd11 SSSOM" ; schema1:url . kgr:obo-db-ingest.icd11.tsv a schema1:Product ; rdfs:label "icd11 Nodes TSV" ; dcterms:description "icd11 Nodes TSV" ; schema1:url . kgr:obo-db-ingest.iconclass.json a schema1:Product ; rdfs:label "iconclass OBO Graph JSON" ; dcterms:description "iconclass OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.iconclass.obo a schema1:Product ; rdfs:label "iconclass OBO" ; dcterms:description "iconclass OBO" ; schema1:url . kgr:obo-db-ingest.iconclass.owl a schema1:Product ; rdfs:label "iconclass OWL" ; dcterms:description "iconclass OWL" ; schema1:url . kgr:obo-db-ingest.iconclass.tsv a schema1:Product ; rdfs:label "iconclass Nodes TSV" ; dcterms:description "iconclass Nodes TSV" ; schema1:url . kgr:obo-db-ingest.interpro.json a schema1:Product ; rdfs:label "interpro OBO Graph JSON" ; dcterms:description "interpro OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.interpro.obo a schema1:Product ; rdfs:label "interpro OBO" ; dcterms:description "interpro OBO" ; schema1:url . kgr:obo-db-ingest.interpro.owl a schema1:Product ; rdfs:label "interpro OWL" ; dcterms:description "interpro OWL" ; schema1:url . kgr:obo-db-ingest.interpro.tsv a schema1:Product ; rdfs:label "interpro Nodes TSV" ; dcterms:description "interpro Nodes TSV" ; schema1:url . kgr:obo-db-ingest.itis.json a schema1:Product ; rdfs:label "itis OBO Graph JSON" ; dcterms:description "itis OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.itis.obo a schema1:Product ; rdfs:label "itis OBO" ; dcterms:description "itis OBO" ; schema1:url . kgr:obo-db-ingest.itis.owl a schema1:Product ; rdfs:label "itis OWL" ; dcterms:description "itis OWL" ; schema1:url . kgr:obo-db-ingest.itis.tsv a schema1:Product ; rdfs:label "itis Nodes TSV" ; dcterms:description "itis Nodes TSV" ; schema1:url . kgr:obo-db-ingest.kegg.genome.json a schema1:Product ; rdfs:label "kegg.genome OBO Graph JSON" ; dcterms:description "kegg.genome OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.kegg.genome.obo a schema1:Product ; rdfs:label "kegg.genome OBO" ; dcterms:description "kegg.genome OBO" ; schema1:url . kgr:obo-db-ingest.kegg.genome.owl a schema1:Product ; rdfs:label "kegg.genome OWL" ; dcterms:description "kegg.genome OWL" ; schema1:url . kgr:obo-db-ingest.kegg.genome.tsv a schema1:Product ; rdfs:label "kegg.genome Nodes TSV" ; dcterms:description "kegg.genome Nodes TSV" ; schema1:url . kgr:obo-db-ingest.mesh.json a schema1:Product ; rdfs:label "mesh OBO Graph JSON" ; dcterms:description "mesh OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.mesh.obo a schema1:Product ; rdfs:label "mesh OBO" ; dcterms:description "mesh OBO" ; schema1:url . kgr:obo-db-ingest.mesh.owl a schema1:Product ; rdfs:label "mesh OWL" ; dcterms:description "mesh OWL" ; schema1:url . kgr:obo-db-ingest.mesh.tsv a schema1:Product ; rdfs:label "mesh Nodes TSV" ; dcterms:description "mesh Nodes TSV" ; schema1:url . kgr:obo-db-ingest.mgi.json a schema1:Product ; rdfs:label "mgi OBO Graph JSON" ; dcterms:description "mgi OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.mgi.obo a schema1:Product ; rdfs:label "mgi OBO" ; dcterms:description "mgi OBO" ; schema1:url . kgr:obo-db-ingest.mgi.owl a schema1:Product ; rdfs:label "mgi OWL" ; dcterms:description "mgi OWL" ; schema1:url . kgr:obo-db-ingest.mgi.sssom.tsv a schema1:MappingProduct ; rdfs:label "mgi SSSOM" ; dcterms:description "mgi SSSOM" ; schema1:url . kgr:obo-db-ingest.mgi.tsv a schema1:Product ; rdfs:label "mgi Nodes TSV" ; dcterms:description "mgi Nodes TSV" ; schema1:url . kgr:obo-db-ingest.mirbase.family.json a schema1:Product ; rdfs:label "mirbase.family OBO Graph JSON" ; dcterms:description "mirbase.family OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.mirbase.family.obo a schema1:Product ; rdfs:label "mirbase.family OBO" ; dcterms:description "mirbase.family OBO" ; schema1:url . kgr:obo-db-ingest.mirbase.family.owl a schema1:Product ; rdfs:label "mirbase.family OWL" ; dcterms:description "mirbase.family OWL" ; schema1:url . kgr:obo-db-ingest.mirbase.family.tsv a schema1:Product ; rdfs:label "mirbase.family Nodes TSV" ; dcterms:description "mirbase.family Nodes TSV" ; schema1:url . kgr:obo-db-ingest.mirbase.json a schema1:Product ; rdfs:label "mirbase OBO Graph JSON" ; dcterms:description "mirbase OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.mirbase.mature.json a schema1:Product ; rdfs:label "mirbase.mature OBO Graph JSON" ; dcterms:description "mirbase.mature OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.mirbase.mature.obo a schema1:Product ; rdfs:label "mirbase.mature OBO" ; dcterms:description "mirbase.mature OBO" ; schema1:url . kgr:obo-db-ingest.mirbase.mature.owl a schema1:Product ; rdfs:label "mirbase.mature OWL" ; dcterms:description "mirbase.mature OWL" ; schema1:url . kgr:obo-db-ingest.mirbase.mature.tsv a schema1:Product ; rdfs:label "mirbase.mature Nodes TSV" ; dcterms:description "mirbase.mature Nodes TSV" ; schema1:url . kgr:obo-db-ingest.mirbase.obo a schema1:Product ; rdfs:label "mirbase OBO" ; dcterms:description "mirbase OBO" ; schema1:url . kgr:obo-db-ingest.mirbase.owl a schema1:Product ; rdfs:label "mirbase OWL" ; dcterms:description "mirbase OWL" ; schema1:url . kgr:obo-db-ingest.mirbase.sssom.tsv a schema1:MappingProduct ; rdfs:label "mirbase SSSOM" ; dcterms:description "mirbase SSSOM" ; schema1:url . kgr:obo-db-ingest.mirbase.tsv a schema1:Product ; rdfs:label "mirbase Nodes TSV" ; dcterms:description "mirbase Nodes TSV" ; schema1:url . kgr:obo-db-ingest.msigdb.json a schema1:Product ; rdfs:label "msigdb OBO Graph JSON" ; dcterms:description "msigdb OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.msigdb.obo a schema1:Product ; rdfs:label "msigdb OBO" ; dcterms:description "msigdb OBO" ; schema1:url . kgr:obo-db-ingest.msigdb.owl a schema1:Product ; rdfs:label "msigdb OWL" ; dcterms:description "msigdb OWL" ; schema1:url . kgr:obo-db-ingest.msigdb.sssom.tsv a schema1:MappingProduct ; rdfs:label "msigdb SSSOM" ; dcterms:description "msigdb SSSOM" ; schema1:url . kgr:obo-db-ingest.msigdb.tsv a schema1:Product ; rdfs:label "msigdb Nodes TSV" ; dcterms:description "msigdb Nodes TSV" ; schema1:url . kgr:obo-db-ingest.ncbi.gc.json a schema1:Product ; rdfs:label "ncbi.gc OBO Graph JSON" ; dcterms:description "ncbi.gc OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.ncbi.gc.obo a schema1:Product ; rdfs:label "ncbi.gc OBO" ; dcterms:description "ncbi.gc OBO" ; schema1:url . kgr:obo-db-ingest.ncbi.gc.owl a schema1:Product ; rdfs:label "ncbi.gc OWL" ; dcterms:description "ncbi.gc OWL" ; schema1:url . kgr:obo-db-ingest.ncbi.gc.sssom.tsv a schema1:MappingProduct ; rdfs:label "ncbi.gc SSSOM" ; dcterms:description "ncbi.gc SSSOM" ; schema1:url . kgr:obo-db-ingest.ncbi.gc.tsv a schema1:Product ; rdfs:label "ncbi.gc Nodes TSV" ; dcterms:description "ncbi.gc Nodes TSV" ; schema1:url . kgr:obo-db-ingest.nihreporter.project.json a schema1:Product ; rdfs:label "nihreporter.project OBO Graph JSON" ; dcterms:description "nihreporter.project OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.nihreporter.project.obo a schema1:Product ; rdfs:label "nihreporter.project OBO" ; dcterms:description "nihreporter.project OBO" ; schema1:url . kgr:obo-db-ingest.nihreporter.project.owl a schema1:Product ; rdfs:label "nihreporter.project OWL" ; dcterms:description "nihreporter.project OWL" ; schema1:url . kgr:obo-db-ingest.nihreporter.project.tsv a schema1:Product ; rdfs:label "nihreporter.project Nodes TSV" ; dcterms:description "nihreporter.project Nodes TSV" ; schema1:url . kgr:obo-db-ingest.nlm.json a schema1:Product ; rdfs:label "nlm OBO Graph JSON" ; dcterms:description "nlm OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.nlm.obo a schema1:Product ; rdfs:label "nlm OBO" ; dcterms:description "nlm OBO" ; schema1:url . kgr:obo-db-ingest.nlm.owl a schema1:Product ; rdfs:label "nlm OWL" ; dcterms:description "nlm OWL" ; schema1:url . kgr:obo-db-ingest.nlm.publisher.json a schema1:Product ; rdfs:label "nlm.publisher OBO Graph JSON" ; dcterms:description "nlm.publisher OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.nlm.publisher.obo a schema1:Product ; rdfs:label "nlm.publisher OBO" ; dcterms:description "nlm.publisher OBO" ; schema1:url . kgr:obo-db-ingest.nlm.publisher.owl a schema1:Product ; rdfs:label "nlm.publisher OWL" ; dcterms:description "nlm.publisher OWL" ; schema1:url . kgr:obo-db-ingest.nlm.publisher.sssom.tsv a schema1:MappingProduct ; rdfs:label "nlm.publisher SSSOM" ; dcterms:description "nlm.publisher SSSOM" ; schema1:url . kgr:obo-db-ingest.nlm.publisher.tsv a schema1:Product ; rdfs:label "nlm.publisher Nodes TSV" ; dcterms:description "nlm.publisher Nodes TSV" ; schema1:url . kgr:obo-db-ingest.nlm.sssom.tsv a schema1:MappingProduct ; rdfs:label "nlm SSSOM" ; dcterms:description "nlm SSSOM" ; schema1:url . kgr:obo-db-ingest.nlm.tsv a schema1:Product ; rdfs:label "nlm Nodes TSV" ; dcterms:description "nlm Nodes TSV" ; schema1:url . kgr:obo-db-ingest.npass.json a schema1:Product ; rdfs:label "npass OBO Graph JSON" ; dcterms:description "npass OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.npass.obo a schema1:Product ; rdfs:label "npass OBO" ; dcterms:description "npass OBO" ; schema1:url . kgr:obo-db-ingest.npass.owl a schema1:Product ; rdfs:label "npass OWL" ; dcterms:description "npass OWL" ; schema1:url . kgr:obo-db-ingest.npass.sssom.tsv a schema1:MappingProduct ; rdfs:label "npass SSSOM" ; dcterms:description "npass SSSOM" ; schema1:url . kgr:obo-db-ingest.npass.tsv a schema1:Product ; rdfs:label "npass Nodes TSV" ; dcterms:description "npass Nodes TSV" ; schema1:url . kgr:obo-db-ingest.omim.ps.json a schema1:Product ; rdfs:label "omim.ps OBO Graph JSON" ; dcterms:description "omim.ps OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.omim.ps.obo a schema1:Product ; rdfs:label "omim.ps OBO" ; dcterms:description "omim.ps OBO" ; schema1:url . kgr:obo-db-ingest.omim.ps.owl a schema1:Product ; rdfs:label "omim.ps OWL" ; dcterms:description "omim.ps OWL" ; schema1:url . kgr:obo-db-ingest.omim.ps.tsv a schema1:Product ; rdfs:label "omim.ps Nodes TSV" ; dcterms:description "omim.ps Nodes TSV" ; schema1:url . kgr:obo-db-ingest.pathbank.json a schema1:Product ; rdfs:label "pathbank OBO Graph JSON" ; dcterms:description "pathbank OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.pathbank.obo a schema1:Product ; rdfs:label "pathbank OBO" ; dcterms:description "pathbank OBO" ; schema1:url . kgr:obo-db-ingest.pathbank.owl a schema1:Product ; rdfs:label "pathbank OWL" ; dcterms:description "pathbank OWL" ; schema1:url . kgr:obo-db-ingest.pathbank.sssom.tsv a schema1:MappingProduct ; rdfs:label "pathbank SSSOM" ; dcterms:description "pathbank SSSOM" ; schema1:url . kgr:obo-db-ingest.pathbank.tsv a schema1:Product ; rdfs:label "pathbank Nodes TSV" ; dcterms:description "pathbank Nodes TSV" ; schema1:url . kgr:obo-db-ingest.pfam.clan.json a schema1:Product ; rdfs:label "pfam.clan OBO Graph JSON" ; dcterms:description "pfam.clan OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.pfam.clan.obo a schema1:Product ; rdfs:label "pfam.clan OBO" ; dcterms:description "pfam.clan OBO" ; schema1:url . kgr:obo-db-ingest.pfam.clan.owl a schema1:Product ; rdfs:label "pfam.clan OWL" ; dcterms:description "pfam.clan OWL" ; schema1:url . kgr:obo-db-ingest.pfam.clan.tsv a schema1:Product ; rdfs:label "pfam.clan Nodes TSV" ; dcterms:description "pfam.clan Nodes TSV" ; schema1:url . kgr:obo-db-ingest.pfam.json a schema1:Product ; rdfs:label "pfam OBO Graph JSON" ; dcterms:description "pfam OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.pfam.obo a schema1:Product ; rdfs:label "pfam OBO" ; dcterms:description "pfam OBO" ; schema1:url . kgr:obo-db-ingest.pfam.owl a schema1:Product ; rdfs:label "pfam OWL" ; dcterms:description "pfam OWL" ; schema1:url . kgr:obo-db-ingest.pfam.tsv a schema1:Product ; rdfs:label "pfam Nodes TSV" ; dcterms:description "pfam Nodes TSV" ; schema1:url . kgr:obo-db-ingest.pharmgkb.disease.json a schema1:Product ; rdfs:label "pharmgkb.disease OBO Graph JSON" ; dcterms:description "pharmgkb.disease OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.pharmgkb.disease.obo a schema1:Product ; rdfs:label "pharmgkb.disease OBO" ; dcterms:description "pharmgkb.disease OBO" ; schema1:url . kgr:obo-db-ingest.pharmgkb.disease.owl a schema1:Product ; rdfs:label "pharmgkb.disease OWL" ; dcterms:description "pharmgkb.disease OWL" ; schema1:url . kgr:obo-db-ingest.pharmgkb.disease.sssom.tsv a schema1:MappingProduct ; rdfs:label "pharmgkb.disease SSSOM" ; dcterms:description "pharmgkb.disease SSSOM" ; schema1:url . kgr:obo-db-ingest.pharmgkb.disease.tsv a schema1:Product ; rdfs:label "pharmgkb.disease Nodes TSV" ; dcterms:description "pharmgkb.disease Nodes TSV" ; schema1:url . kgr:obo-db-ingest.pharmgkb.drug.json a schema1:Product ; rdfs:label "pharmgkb.drug OBO Graph JSON" ; dcterms:description "pharmgkb.drug OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.pharmgkb.drug.obo a schema1:Product ; rdfs:label "pharmgkb.drug OBO" ; dcterms:description "pharmgkb.drug OBO" ; schema1:url . kgr:obo-db-ingest.pharmgkb.drug.owl a schema1:Product ; rdfs:label "pharmgkb.drug OWL" ; dcterms:description "pharmgkb.drug OWL" ; schema1:url . kgr:obo-db-ingest.pharmgkb.drug.sssom.tsv a schema1:MappingProduct ; rdfs:label "pharmgkb.drug SSSOM" ; dcterms:description "pharmgkb.drug SSSOM" ; schema1:url . kgr:obo-db-ingest.pharmgkb.drug.tsv a schema1:Product ; rdfs:label "pharmgkb.drug Nodes TSV" ; dcterms:description "pharmgkb.drug Nodes TSV" ; schema1:url . kgr:obo-db-ingest.pharmgkb.gene.json a schema1:Product ; rdfs:label "pharmgkb.gene OBO Graph JSON" ; dcterms:description "pharmgkb.gene OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.pharmgkb.gene.obo a schema1:Product ; rdfs:label "pharmgkb.gene OBO" ; dcterms:description "pharmgkb.gene OBO" ; schema1:url . kgr:obo-db-ingest.pharmgkb.gene.owl a schema1:Product ; rdfs:label "pharmgkb.gene OWL" ; dcterms:description "pharmgkb.gene OWL" ; schema1:url . kgr:obo-db-ingest.pharmgkb.gene.sssom.tsv a schema1:MappingProduct ; rdfs:label "pharmgkb.gene SSSOM" ; dcterms:description "pharmgkb.gene SSSOM" ; schema1:url . kgr:obo-db-ingest.pharmgkb.gene.tsv a schema1:Product ; rdfs:label "pharmgkb.gene Nodes TSV" ; dcterms:description "pharmgkb.gene Nodes TSV" ; schema1:url . kgr:obo-db-ingest.pharmgkb.pathways.json a schema1:Product ; rdfs:label "pharmgkb.pathways OBO Graph JSON" ; dcterms:description "pharmgkb.pathways OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.pharmgkb.pathways.obo a schema1:Product ; rdfs:label "pharmgkb.pathways OBO" ; dcterms:description "pharmgkb.pathways OBO" ; schema1:url . kgr:obo-db-ingest.pharmgkb.pathways.owl a schema1:Product ; rdfs:label "pharmgkb.pathways OWL" ; dcterms:description "pharmgkb.pathways OWL" ; schema1:url . kgr:obo-db-ingest.pharmgkb.pathways.tsv a schema1:Product ; rdfs:label "pharmgkb.pathways Nodes TSV" ; dcterms:description "pharmgkb.pathways Nodes TSV" ; schema1:url . kgr:obo-db-ingest.pharmgkb.variant.json a schema1:Product ; rdfs:label "pharmgkb.variant OBO Graph JSON" ; dcterms:description "pharmgkb.variant OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.pharmgkb.variant.obo a schema1:Product ; rdfs:label "pharmgkb.variant OBO" ; dcterms:description "pharmgkb.variant OBO" ; schema1:url . kgr:obo-db-ingest.pharmgkb.variant.owl a schema1:Product ; rdfs:label "pharmgkb.variant OWL" ; dcterms:description "pharmgkb.variant OWL" ; schema1:url . kgr:obo-db-ingest.pharmgkb.variant.sssom.tsv a schema1:MappingProduct ; rdfs:label "pharmgkb.variant SSSOM" ; dcterms:description "pharmgkb.variant SSSOM" ; schema1:url . kgr:obo-db-ingest.pharmgkb.variant.tsv a schema1:Product ; rdfs:label "pharmgkb.variant Nodes TSV" ; dcterms:description "pharmgkb.variant Nodes TSV" ; schema1:url . kgr:obo-db-ingest.pid.pathway.json a schema1:Product ; rdfs:label "pid.pathway OBO Graph JSON" ; dcterms:description "pid.pathway OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.pid.pathway.obo a schema1:Product ; rdfs:label "pid.pathway OBO" ; dcterms:description "pid.pathway OBO" ; schema1:url . kgr:obo-db-ingest.pid.pathway.owl a schema1:Product ; rdfs:label "pid.pathway OWL" ; dcterms:description "pid.pathway OWL" ; schema1:url . kgr:obo-db-ingest.pid.pathway.tsv a schema1:Product ; rdfs:label "pid.pathway Nodes TSV" ; dcterms:description "pid.pathway Nodes TSV" ; schema1:url . kgr:obo-db-ingest.pombase.json a schema1:Product ; rdfs:label "pombase OBO Graph JSON" ; dcterms:description "pombase OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.pombase.obo a schema1:Product ; rdfs:label "pombase OBO" ; dcterms:description "pombase OBO" ; schema1:url . kgr:obo-db-ingest.pombase.owl a schema1:Product ; rdfs:label "pombase OWL" ; dcterms:description "pombase OWL" ; schema1:url . kgr:obo-db-ingest.pombase.tsv a schema1:Product ; rdfs:label "pombase Nodes TSV" ; dcterms:description "pombase Nodes TSV" ; schema1:url . kgr:obo-db-ingest.reactome.json a schema1:Product ; rdfs:label "reactome OBO Graph JSON" ; dcterms:description "reactome OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.reactome.obo a schema1:Product ; rdfs:label "reactome OBO" ; dcterms:description "reactome OBO" ; schema1:url . kgr:obo-db-ingest.reactome.owl a schema1:Product ; rdfs:label "reactome OWL" ; dcterms:description "reactome OWL" ; schema1:url . kgr:obo-db-ingest.reactome.tsv a schema1:Product ; rdfs:label "reactome Nodes TSV" ; dcterms:description "reactome Nodes TSV" ; schema1:url . kgr:obo-db-ingest.rgd.json a schema1:Product ; rdfs:label "rgd OBO Graph JSON" ; dcterms:description "rgd OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.rgd.obo a schema1:Product ; rdfs:label "rgd OBO" ; dcterms:description "rgd OBO" ; schema1:url . kgr:obo-db-ingest.rgd.owl a schema1:Product ; rdfs:label "rgd OWL" ; dcterms:description "rgd OWL" ; schema1:url . kgr:obo-db-ingest.rgd.sssom.tsv a schema1:MappingProduct ; rdfs:label "rgd SSSOM" ; dcterms:description "rgd SSSOM" ; schema1:url . kgr:obo-db-ingest.rgd.tsv a schema1:Product ; rdfs:label "rgd Nodes TSV" ; dcterms:description "rgd Nodes TSV" ; schema1:url . kgr:obo-db-ingest.rhea.json a schema1:Product ; rdfs:label "rhea OBO Graph JSON" ; dcterms:description "rhea OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.rhea.obo a schema1:Product ; rdfs:label "rhea OBO" ; dcterms:description "rhea OBO" ; schema1:url . kgr:obo-db-ingest.rhea.owl a schema1:Product ; rdfs:label "rhea OWL" ; dcterms:description "rhea OWL" ; schema1:url . kgr:obo-db-ingest.rhea.tsv a schema1:Product ; rdfs:label "rhea Nodes TSV" ; dcterms:description "rhea Nodes TSV" ; schema1:url . kgr:obo-db-ingest.ror.json a schema1:Product ; rdfs:label "ror OBO Graph JSON" ; dcterms:description "ror OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.ror.obo a schema1:Product ; rdfs:label "ror OBO" ; dcterms:description "ror OBO" ; schema1:url . kgr:obo-db-ingest.ror.owl a schema1:Product ; rdfs:label "ror OWL" ; dcterms:description "ror OWL" ; schema1:url . kgr:obo-db-ingest.ror.sssom.tsv a schema1:MappingProduct ; rdfs:label "ror SSSOM" ; dcterms:description "ror SSSOM" ; schema1:url . kgr:obo-db-ingest.ror.tsv a schema1:Product ; rdfs:label "ror Nodes TSV" ; dcterms:description "ror Nodes TSV" ; schema1:url . kgr:obo-db-ingest.sgd.json a schema1:Product ; rdfs:label "sgd OBO Graph JSON" ; dcterms:description "sgd OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.sgd.obo a schema1:Product ; rdfs:label "sgd OBO" ; dcterms:description "sgd OBO" ; schema1:url . kgr:obo-db-ingest.sgd.owl a schema1:Product ; rdfs:label "sgd OWL" ; dcterms:description "sgd OWL" ; schema1:url . kgr:obo-db-ingest.sgd.tsv a schema1:Product ; rdfs:label "sgd Nodes TSV" ; dcterms:description "sgd Nodes TSV" ; schema1:url . kgr:obo-db-ingest.signor.json a schema1:Product ; rdfs:label "signor OBO Graph JSON" ; dcterms:description "signor OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.signor.obo a schema1:Product ; rdfs:label "signor OBO" ; dcterms:description "signor OBO" ; schema1:url . kgr:obo-db-ingest.signor.owl a schema1:Product ; rdfs:label "signor OWL" ; dcterms:description "signor OWL" ; schema1:url . kgr:obo-db-ingest.signor.tsv a schema1:Product ; rdfs:label "signor Nodes TSV" ; dcterms:description "signor Nodes TSV" ; schema1:url . kgr:obo-db-ingest.spdx.json a schema1:Product ; rdfs:label "spdx OBO Graph JSON" ; dcterms:description "spdx OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.spdx.obo a schema1:Product ; rdfs:label "spdx OBO" ; dcterms:description "spdx OBO" ; schema1:url . kgr:obo-db-ingest.spdx.owl a schema1:Product ; rdfs:label "spdx OWL" ; dcterms:description "spdx OWL" ; schema1:url . kgr:obo-db-ingest.spdx.tsv a schema1:Product ; rdfs:label "spdx Nodes TSV" ; dcterms:description "spdx Nodes TSV" ; schema1:url . kgr:obo-db-ingest.sty.json a schema1:Product ; rdfs:label "sty OBO Graph JSON" ; dcterms:description "sty OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.sty.obo a schema1:Product ; rdfs:label "sty OBO" ; dcterms:description "sty OBO" ; schema1:url . kgr:obo-db-ingest.sty.owl a schema1:Product ; rdfs:label "sty OWL" ; dcterms:description "sty OWL" ; schema1:url . kgr:obo-db-ingest.sty.tsv a schema1:Product ; rdfs:label "sty Nodes TSV" ; dcterms:description "sty Nodes TSV" ; schema1:url . kgr:obo-db-ingest.swisslipid.json a schema1:Product ; rdfs:label "swisslipid OBO Graph JSON" ; dcterms:description "swisslipid OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.swisslipid.obo a schema1:Product ; rdfs:label "swisslipid OBO" ; dcterms:description "swisslipid OBO" ; schema1:url . kgr:obo-db-ingest.swisslipid.owl a schema1:Product ; rdfs:label "swisslipid OWL" ; dcterms:description "swisslipid OWL" ; schema1:url . kgr:obo-db-ingest.swisslipid.sssom.tsv a schema1:MappingProduct ; rdfs:label "swisslipid SSSOM" ; dcterms:description "swisslipid SSSOM" ; schema1:url . kgr:obo-db-ingest.swisslipid.tsv a schema1:Product ; rdfs:label "swisslipid Nodes TSV" ; dcterms:description "swisslipid Nodes TSV" ; schema1:url . kgr:obo-db-ingest.uniprot.json a schema1:Product ; rdfs:label "uniprot OBO Graph JSON" ; dcterms:description "uniprot OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.uniprot.obo a schema1:Product ; rdfs:label "uniprot OBO" ; dcterms:description "uniprot OBO" ; schema1:url . kgr:obo-db-ingest.uniprot.owl a schema1:Product ; rdfs:label "uniprot OWL" ; dcterms:description "uniprot OWL" ; schema1:url . kgr:obo-db-ingest.uniprot.ptm.json a schema1:Product ; rdfs:label "uniprot.ptm OBO Graph JSON" ; dcterms:description "uniprot.ptm OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.uniprot.ptm.obo a schema1:Product ; rdfs:label "uniprot.ptm OBO" ; dcterms:description "uniprot.ptm OBO" ; schema1:url . kgr:obo-db-ingest.uniprot.ptm.owl a schema1:Product ; rdfs:label "uniprot.ptm OWL" ; dcterms:description "uniprot.ptm OWL" ; schema1:url . kgr:obo-db-ingest.uniprot.ptm.sssom.tsv a schema1:MappingProduct ; rdfs:label "uniprot.ptm SSSOM" ; dcterms:description "uniprot.ptm SSSOM" ; schema1:url . kgr:obo-db-ingest.uniprot.ptm.tsv a schema1:Product ; rdfs:label "uniprot.ptm Nodes TSV" ; dcterms:description "uniprot.ptm Nodes TSV" ; schema1:url . kgr:obo-db-ingest.uniprot.sssom.tsv a schema1:MappingProduct ; rdfs:label "uniprot SSSOM" ; dcterms:description "uniprot SSSOM" ; schema1:url . kgr:obo-db-ingest.uniprot.tsv a schema1:Product ; rdfs:label "uniprot Nodes TSV" ; dcterms:description "uniprot Nodes TSV" ; schema1:url . kgr:obo-db-ingest.wikipathways.json a schema1:Product ; rdfs:label "wikipathways OBO Graph JSON" ; dcterms:description "wikipathways OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.wikipathways.obo a schema1:Product ; rdfs:label "wikipathways OBO" ; dcterms:description "wikipathways OBO" ; schema1:url . kgr:obo-db-ingest.wikipathways.owl a schema1:Product ; rdfs:label "wikipathways OWL" ; dcterms:description "wikipathways OWL" ; schema1:url . kgr:obo-db-ingest.wikipathways.tsv a schema1:Product ; rdfs:label "wikipathways Nodes TSV" ; dcterms:description "wikipathways Nodes TSV" ; schema1:url . kgr:obo-db-ingest.zfin.json a schema1:Product ; rdfs:label "zfin OBO Graph JSON" ; dcterms:description "zfin OBO Graph JSON" ; schema1:url . kgr:obo-db-ingest.zfin.obo a schema1:Product ; rdfs:label "zfin OBO" ; dcterms:description "zfin OBO" ; schema1:url . kgr:obo-db-ingest.zfin.owl a schema1:Product ; rdfs:label "zfin OWL" ; dcterms:description "zfin OWL" ; schema1:url . kgr:obo-db-ingest.zfin.sssom.tsv a schema1:MappingProduct ; rdfs:label "zfin SSSOM" ; dcterms:description "zfin SSSOM" ; schema1:url . kgr:obo-db-ingest.zfin.tsv a schema1:Product ; rdfs:label "zfin Nodes TSV" ; dcterms:description "zfin Nodes TSV" ; schema1:url . kgr:oboe.bioportal a schema1:GraphicalInterface ; rdfs:label "OBOE on BioPortal" ; dcterms:description "BioPortal page for OBOE (acronym OBOE), providing browsing, search, and download of the ontology. The latest submission is version 1.2, released 2019-09-17." ; schema1:url . kgr:ohd-carolina.graph a schema1:GraphProduct ; rdfs:label "OHD@Carolina Automat KGX Graph" ; dcterms:description "KGX JSONL nodes and edges files for the OHD@Carolina Automat graph (build f627ebbefd242454, source version 2024-11-18, published 2025-10-06), with 27,356 nodes and 22,732,570 edges. Edges use biolink:positively_correlated_with (22,352,823) and biolink:negatively_correlated_with (379,747)." ; schema1:url . kgr:ohd-carolina.source-edges a schema1:Product ; rdfs:label "OHD@Carolina Source Edge Table" ; dcterms:description "Source edge table (unc_omop_2018_2022_kg.csv, about 2 GB zipped) of concept pair associations from the UNC Health OMOP cohort, with chi-squared p-values, log odds ratios, scores and sample sizes, as ingested by the ORION OHD parser (build 2024-11-18)." ; schema1:url . kgr:ohdsi.athena a schema1:GraphicalInterface ; rdfs:label "OHDSI Athena Vocabulary Browser" ; dcterms:description "Athena web application for searching OHDSI standardized vocabularies and preparing OMOP vocabulary downloads" ; schema1:url . kgr:ohdsi.athena_vocabularies a schema1:Product ; rdfs:label "OHDSI Standardized Vocabulary Downloads" ; dcterms:description "Standardized vocabulary bundles for OMOP CDM assembled through the Athena authenticated web application" ; schema1:url . kgr:ohdsi.omop_cdm a schema1:DataModelProduct ; rdfs:label "OMOP Common Data Model" ; dcterms:description "OMOP Common Data Model specification and downloadable DDL artifacts maintained by the OHDSI community" ; schema1:url . kgr:ols.json a schema1:Product ; rdfs:label "OLS Ontologies JSON" ; dcterms:description "Gzipped tar archive (ontology_jsons.tgz, about 2 GB) of all ontologies loaded into OLS, in OLS JSON format." ; schema1:url . kgr:ols.json-linked a schema1:Product ; rdfs:label "OLS Linked Ontology JSON" ; dcterms:description "Gzipped tar archive (ontology_jsons_linked.tgz) of OLS ontology JSON with added cross-ontology and external database links." ; schema1:url . kgr:oma.mapping.ensembl a schema1:MappingProduct ; rdfs:label "OMA to Ensembl Mapping" ; dcterms:description "Mapping of OMA identifiers to Ensembl identifiers" ; schema1:url . kgr:oma.mapping.entrez a schema1:MappingProduct ; rdfs:label "OMA to Entrez Gene Mapping" ; dcterms:description "Mapping of OMA identifiers to Entrez Gene identifiers" ; schema1:url . kgr:oma.mapping.go a schema1:MappingProduct ; rdfs:label "OMA to GO Mapping" ; dcterms:description "Mapping of OMA identifiers to Gene Ontology terms" ; schema1:url . kgr:oma.mapping.refseq a schema1:MappingProduct ; rdfs:label "OMA to RefSeq Mapping" ; dcterms:description "Mapping of OMA identifiers to RefSeq accessions" ; schema1:url . kgr:oma.mapping.uniprot a schema1:MappingProduct ; rdfs:label "OMA to UniProt Mapping" ; dcterms:description "Mapping of OMA identifiers to UniProt accession numbers" ; schema1:url . kgr:omia.gene-mappings a schema1:MappingProduct ; rdfs:label "OMIA to NCBI Gene mappings" ; dcterms:description "A CSV mapping OMIA internal gene identifiers to NCBI Gene identifiers." ; schema1:url . kgr:ontology-kp.graph a schema1:GraphProduct ; rdfs:label "Ontology KP Graph" ; dcterms:description "Ontology KP graph served over Ubergraph, a precomputed OWL-reasoned RDF merge of OBO ontologies queried via SPARQL for ontology-based Translator services." ; schema1:url . kgr:open-english-wordnet.json a schema1:Product ; rdfs:label "Open English WordNet 2025 JSON" ; dcterms:description "2025 edition of Open English WordNet (common nouns, verbs, adjectives and adverbs only) as a set of JSON files." ; schema1:url . kgr:open-english-wordnet.lmf a schema1:Product ; rdfs:label "Open English WordNet 2025 WN-LMF XML" ; dcterms:description "2025 edition of Open English WordNet (common nouns, verbs, adjectives and adverbs only) in Global WordNet Association WN-LMF XML format." ; schema1:url . kgr:open-english-wordnet.rdf a schema1:GraphProduct ; rdfs:label "Open English WordNet 2025 RDF" ; dcterms:description "2025 edition of Open English WordNet (common nouns, verbs, adjectives and adverbs only) as RDF in Turtle syntax, using the Lemon/OntoLex model." ; schema1:url . kgr:open-english-wordnet.wndb a schema1:Product ; rdfs:label "Open English WordNet 2025 WNDB" ; dcterms:description "2025 edition of Open English WordNet (common nouns, verbs, adjectives and adverbs only) in the legacy Princeton WordNet database (WNDB) text file format, for older applications." ; schema1:url . kgr:open-tggates.arrayexpress-human-in-vitro a schema1:Product ; rdfs:label "Open TG-GATEs in ArrayExpress (Human In Vitro)" ; dcterms:description "ArrayExpress record E-MTAB-798, Open TG-GATEs gene expression data from human primary hepatocytes treated in vitro (Affymetrix Human Genome U133 Plus 2.0)." ; schema1:url . kgr:open-tggates.arrayexpress-rat-in-vitro a schema1:Product ; rdfs:label "Open TG-GATEs in ArrayExpress (Rat In Vitro)" ; dcterms:description "ArrayExpress record E-MTAB-797, Open TG-GATEs gene expression data from rat primary hepatocytes treated in vitro (Affymetrix Rat Genome 230 2.0)." ; schema1:url . kgr:open-tggates.arrayexpress-rat-repeat-dose a schema1:Product ; rdfs:label "Open TG-GATEs in ArrayExpress (Rat In Vivo Repeated Dose)" ; dcterms:description "ArrayExpress record E-MTAB-800, Open TG-GATEs gene expression data from rat liver and kidney after repeated-dose in vivo exposure (Affymetrix Rat Genome 230 2.0)." ; schema1:url . kgr:open-tggates.arrayexpress-rat-single-dose a schema1:Product ; rdfs:label "Open TG-GATEs in ArrayExpress (Rat In Vivo Single Dose)" ; dcterms:description "ArrayExpress record E-MTAB-799, Open TG-GATEs gene expression data from rat liver and kidney after single-dose in vivo exposure (Affymetrix Rat Genome 230 2.0)." ; schema1:url . kgr:openbiodiv.api a schema1:ProgrammingInterface ; rdfs:label "OpenBiodiv REST API" ; dcterms:description "RESTful API for programmatic access to OpenBiodiv biodiversity data with Swagger API documentation for easy integration" ; schema1:url . kgr:openbiodiv.portal a schema1:GraphicalInterface ; rdfs:label "OpenBiodiv Web Portal" ; dcterms:description "Interactive web portal for searching, exploring, and discovering biodiversity knowledge graph data including taxonomic treatments, species descriptions, and literature-extracted information" ; schema1:url . kgr:openbiodiv.sparql a schema1:ProgrammingInterface ; rdfs:label "OpenBiodiv SPARQL Endpoint" ; dcterms:description "SPARQL endpoint for complex semantic queries across the biodiversity knowledge graph, enabling advanced queries combining taxonomic, literature, specimen, and ecological data" ; schema1:url . kgr:opengwas.api a schema1:ProgrammingInterface ; rdfs:label "IEU OpenGWAS API" ; dcterms:description "REST API for programmatic access to IEU OpenGWAS study information, top hits, association records, LD proxies, and related MR-Base analysis inputs" ; schema1:url . kgr:opengwas.datasets a schema1:Product ; rdfs:label "IEU OpenGWAS Dataset Catalog" ; dcterms:description "OpenGWAS GWAS summary dataset catalog and downloadable files for curated genome-wide association studies." ; schema1:url . kgr:opengwas.portal a schema1:GraphicalInterface ; rdfs:label "IEU OpenGWAS Portal" ; dcterms:description "IEU OpenGWAS browser for exploring the harmonized GWAS dataset catalog now used by MR-Base-related tooling" ; schema1:url . kgr:orphanet.ordo_release a schema1:DocumentationProduct ; rdfs:label "ORDO Release Page" ; dcterms:description "Current Orphadata Science page for the Orphanet Rare Disease Ontology release, including ORDO 4.8 OWL downloads and release notes" ; schema1:url . kgr:patric.api a schema1:ProgrammingInterface ; rdfs:label "BV-BRC API" ; dcterms:description "BV-BRC REST Data API for querying and retrieving public data, including data inherited from PATRIC" ; schema1:url . kgr:patric.bv_brc_overview a schema1:DocumentationProduct ; rdfs:label "BV-BRC Overview for PATRIC Users" ; dcterms:description "BV-BRC quick-start overview for PATRIC users, describing how legacy PATRIC data, tools, services, website, and infrastructure were incorporated into BV-BRC" ; schema1:url . kgr:patric.genomes a schema1:Product ; rdfs:label "PATRIC Genome Data" ; dcterms:description "Legacy PATRIC bacterial genome data and annotations now available through BV-BRC genome data views and services" ; schema1:url . kgr:patric.web a schema1:GraphicalInterface ; rdfs:label "PATRIC/BV-BRC Web Portal" ; dcterms:description "BV-BRC web portal that hosts legacy PATRIC bacterial genomics data and tools alongside expanded viral resources" ; schema1:url . kgr:peptideatlas.human.ensembl-mapping a schema1:MappingProduct ; rdfs:label "PeptideAtlas Human Peptide to Ensembl Mapping" ; dcterms:description "Mapping of Human 2026-01 PeptideAtlas peptides to Ensembl proteins." ; schema1:url . kgr:pharmacotherapydb.diseases a schema1:Product ; rdfs:label "PharmacotherapyDB Diseases TSV" ; dcterms:description "Disease table for the PharmacotherapyDB catalog using Disease Ontology identifiers" ; schema1:url . kgr:pharmacotherapydb.drugs a schema1:Product ; rdfs:label "PharmacotherapyDB Drugs TSV" ; dcterms:description "Drug table for the PharmacotherapyDB catalog using DrugBank identifiers" ; schema1:url . kgr:phosphoelm.phosphoblast a schema1:ProcessProduct ; rdfs:label "Phospho.ELM PhosphoBLAST" ; dcterms:description "Phospho.ELM PhosphoBLAST search tool for comparing protein queries against the curated phosphorylated-peptide dataset." ; schema1:url . kgr:physiome-model-repository.exposures a schema1:GraphicalInterface ; rdfs:label "PMR Exposures" ; dcterms:description "Listing of exposures, the published and annotated views of CellML, FieldML and SED-ML models, each tied to a specific workspace revision, with model documentation, metadata and downloads." ; schema1:url . kgr:physiome-model-repository.workspaces a schema1:Product ; rdfs:label "PMR Workspaces" ; dcterms:description "Listing of version-controlled model workspaces. Each workspace is a Git repository holding model files (CellML, FieldML, SED-ML, documentation) that can be cloned with git clone using the workspace URI." ; schema1:url . kgr:plant-reactome.biopax a schema1:Product ; rdfs:label "Plant Reactome BioPAX3 Data" ; dcterms:description "BioPAX3 format pathway data downloads organized by plant species" ; schema1:url . kgr:plant-reactome.png a schema1:Product ; rdfs:label "Plant Reactome PNG Diagrams" ; dcterms:description "PNG raster image format pathway diagrams for static pathway visualization" ; schema1:url . kgr:plant-reactome.svg a schema1:Product ; rdfs:label "Plant Reactome SVG Diagrams" ; dcterms:description "Scalable Vector Graphics (SVG) format pathway diagrams for interactive and high-quality pathway visualization" ; schema1:url . kgr:pombase.genes-products a schema1:Product ; rdfs:label "PomBase gene names and products" ; dcterms:description "Tab-delimited file of systematic ID, primary gene name (where assigned), chromosome, product description, UniProtKB accession, all synonyms, and product type (protein coding, ncRNA, etc.) for each gene" ; schema1:url . kgr:pombase.to-uniprot a schema1:MappingProduct ; rdfs:label "PomBase to UniProt map" ; dcterms:description "Tab-delimited file with the PomBase systematic identifier for each protein-coding gene mapped to the corresponding UniProt accession number" ; schema1:url . kgr:prism.datasets a schema1:Product ; rdfs:label "PRISM Drug Sensitivity Dataset Downloads" ; dcterms:description "DepMap downloads page for PRISM Repurposing primary and secondary screen data" ; schema1:url . kgr:prism.primary_screen_lfc a schema1:Product ; rdfs:label "PRISM Repurposing Primary Screen Log-Fold Change" ; dcterms:description "Replicate-collapsed log-fold-change matrix from the primary PRISM Repurposing screen of pooled-cell line chemical-perturbation viability measurements" ; schema1:url . kgr:prism.secondary_screen_dose_response a schema1:Product ; rdfs:label "PRISM Repurposing Secondary Screen Dose Response" ; dcterms:description "Dose-response curve parameter matrix from the secondary PRISM Repurposing screen of 1,448 compounds across cancer cell lines" ; schema1:url . kgr:prokn.clinvar.gene.associated_with.diseaseorphenotype.edges a schema1:GraphProduct ; rdfs:label "ProKN ClinVar Association Edges" ; dcterms:description "ClinVar gene associated with disease/phenotype edges" ; schema1:url . kgr:prokn.emind.protein.has_variant.variant.edges a schema1:GraphProduct ; rdfs:label "ProKN eMIND Variant Edges" ; dcterms:description "eMIND protein variant edges" ; schema1:url . kgr:prokn.emind.variant.associated_with.disease.edges a schema1:GraphProduct ; rdfs:label "ProKN eMIND Variant Disease Edges" ; dcterms:description "eMIND variant associated with disease edges" ; schema1:url . kgr:prokn.emind.variant.impact.disease.edges a schema1:GraphProduct ; rdfs:label "ProKN eMIND Variant Impact Disease Edges" ; dcterms:description "eMIND variant impact on disease edges" ; schema1:url . kgr:prokn.emind.variant.impact.protein.edges a schema1:GraphProduct ; rdfs:label "ProKN eMIND Variant Impact Protein Edges" ; dcterms:description "eMIND variant impact on protein edges" ; schema1:url . kgr:prokn.glygen.aminoacid.nodes a schema1:GraphProduct ; rdfs:label "ProKN GlyGen AminoAcid Nodes" ; dcterms:description "GlyGen amino acid nodes used in ProKN" ; schema1:url . kgr:prokn.glygen.glycoprotein.glycosylated_at.glycosylationsite.edges a schema1:GraphProduct ; rdfs:label "ProKN GlyGen Glycosylated Site Edges" ; dcterms:description "GlyGen glycoprotein glycosylated site edges" ; schema1:url . kgr:prokn.glygen.glycoprotein.has_evidence.glycoproteinevidence.edges a schema1:GraphProduct ; rdfs:label "ProKN GlyGen Evidence Edges" ; dcterms:description "GlyGen glycoprotein evidence edges" ; schema1:url . kgr:prokn.glygen.glycoprotein.has_pro_entry.gpid2pro.edges a schema1:GraphProduct ; rdfs:label "ProKN GlyGen PRO Entry Edges" ; dcterms:description "GlyGen glycoprotein PRO entry edges" ; schema1:url . kgr:prokn.glygen.glycoprotein.sequence.isoform.edges a schema1:GraphProduct ; rdfs:label "ProKN GlyGen Isoform Sequence Edges" ; dcterms:description "GlyGen glycoprotein isoform sequence edges" ; schema1:url . kgr:prokn.glygen.glycoprotein.sequence.protein.edges a schema1:GraphProduct ; rdfs:label "ProKN GlyGen Protein Sequence Edges" ; dcterms:description "GlyGen glycoprotein protein sequence edges" ; schema1:url . kgr:prokn.glygen.glycoproteinevidence.citation.glycoproteincitation.edges a schema1:GraphProduct ; rdfs:label "ProKN GlyGen Evidence Citation Edges" ; dcterms:description "GlyGen glycoprotein evidence citation edges" ; schema1:url . kgr:prokn.glygen.glycosylation.has_enzyme_protein.protein.edges a schema1:GraphProduct ; rdfs:label "ProKN GlyGen Enzyme Protein Edges" ; dcterms:description "GlyGen glycosylation enzyme protein edges" ; schema1:url . kgr:prokn.glygen.glycosylationsite.has_saccharide.glytoucan.edges a schema1:GraphProduct ; rdfs:label "ProKN GlyGen Saccharide Edges" ; dcterms:description "GlyGen glycosylation site saccharide edges" ; schema1:url . kgr:prokn.glygen.glycosylationsite.location.glygenlocation.edges a schema1:GraphProduct ; rdfs:label "ProKN GlyGen Site Location Edges" ; dcterms:description "GlyGen glycosylation site location edges" ; schema1:url . kgr:prokn.glygen.glycosyltransferasereaction.has_enzyme_protein_gr.protein.edges a schema1:GraphProduct ; rdfs:label "ProKN GlyGen Reaction Enzyme Edges" ; dcterms:description "GlyGen glycosyltransferase reaction enzyme edges" ; schema1:url . kgr:prokn.glygen.glygenlocation.has_amino_acid.aminoacid.edges a schema1:GraphProduct ; rdfs:label "ProKN GlyGen Location Amino Acid Edges" ; dcterms:description "GlyGen location amino acid edges" ; schema1:url . kgr:prokn.glygen.glygenresidue.attached_by.glycosylation.edges a schema1:GraphProduct ; rdfs:label "ProKN GlyGen Residue Attachment Edges" ; dcterms:description "GlyGen residue attached by glycosylation edges" ; schema1:url . kgr:prokn.glygen.glygenresidue.has_parent.glygenresidue.edges a schema1:GraphProduct ; rdfs:label "ProKN GlyGen Residue Parent Edges" ; dcterms:description "GlyGen residue parent edges" ; schema1:url . kgr:prokn.glygen.glytoucan.has_canonical_residue.glygenresidue.edges a schema1:GraphProduct ; rdfs:label "ProKN GlyGen Canonical Residue Edges" ; dcterms:description "GlyGen glytoucan canonical residue edges" ; schema1:url . kgr:prokn.glygen.glytoucan.has_glycosequence.gyglycosequence.edges a schema1:GraphProduct ; rdfs:label "ProKN GlyGen Glycosequence Edges" ; dcterms:description "GlyGen glytoucan glyco-sequence edges" ; schema1:url . kgr:prokn.glygen.glytoucan.has_motif.glycanmotif.edges a schema1:GraphProduct ; rdfs:label "ProKN GlyGen Motif Edges" ; dcterms:description "GlyGen glytoucan motif edges" ; schema1:url . kgr:prokn.glygen.glytoucan.is_from_source.glygensrc.edges a schema1:GraphProduct ; rdfs:label "ProKN GlyGen Source Edges" ; dcterms:description "GlyGen glytoucan source edges" ; schema1:url . kgr:prokn.glygen.glytoucan.synthesized_by.glycosyltransferasereaction.edges a schema1:GraphProduct ; rdfs:label "ProKN GlyGen Synthesized By Edges" ; dcterms:description "GlyGen glytoucan synthesized by reaction edges" ; schema1:url . kgr:prokn.glygen.protein.has_isoform.isoform.edges a schema1:GraphProduct ; rdfs:label "ProKN GlyGen Protein Isoform Edges" ; dcterms:description "GlyGen protein isoform edges" ; schema1:url . kgr:prokn.glygen.protein.has_isoform.protein.edges a schema1:GraphProduct ; rdfs:label "ProKN GlyGen Protein Isoform Protein Edges" ; dcterms:description "GlyGen protein isoform protein edges" ; schema1:url . kgr:prokn.go.goterm.is_a.goterm.edges a schema1:GraphProduct ; rdfs:label "ProKN GO Term Hierarchy Edges" ; dcterms:description "GO term hierarchy edges" ; schema1:url . kgr:prokn.go.protein.acts_upstream_of.goterm.edges a schema1:GraphProduct ; rdfs:label "ProKN GO Acts Upstream Of Edges" ; dcterms:description "GO protein acts upstream of GO term edges" ; schema1:url . kgr:prokn.go.protein.acts_upstream_of_negative_effect.goterm.edges a schema1:GraphProduct ; rdfs:label "ProKN GO Acts Upstream Negative Edges" ; dcterms:description "GO protein acts upstream of negative effect edges" ; schema1:url . kgr:prokn.go.protein.acts_upstream_of_or_within.goterm.edges a schema1:GraphProduct ; rdfs:label "ProKN GO Acts Upstream Or Within Edges" ; dcterms:description "GO protein acts upstream of or within edges" ; schema1:url . kgr:prokn.go.protein.acts_upstream_of_or_within_negative_effect.goterm.edges a schema1:GraphProduct ; rdfs:label "ProKN GO Acts Upstream Or Within Negative Edges" ; dcterms:description "GO protein acts upstream of or within negative effect edges" ; schema1:url . kgr:prokn.go.protein.acts_upstream_of_or_within_positive_effect.goterm.edges a schema1:GraphProduct ; rdfs:label "ProKN GO Acts Upstream Or Within Positive Edges" ; dcterms:description "GO protein acts upstream of or within positive effect edges" ; schema1:url . kgr:prokn.go.protein.acts_upstream_of_positive_effect.goterm.edges a schema1:GraphProduct ; rdfs:label "ProKN GO Acts Upstream Positive Edges" ; dcterms:description "GO protein acts upstream of positive effect edges" ; schema1:url . kgr:prokn.go.protein.colocalizes_with.goterm.edges a schema1:GraphProduct ; rdfs:label "ProKN GO Colocalizes Edges" ; dcterms:description "GO protein colocalizes with GO term edges" ; schema1:url . kgr:prokn.go.protein.contributes_to.goterm.edges a schema1:GraphProduct ; rdfs:label "ProKN GO Contributes To Edges" ; dcterms:description "GO protein contributes to GO term edges" ; schema1:url . kgr:prokn.go.protein.enables.goterm.edges a schema1:GraphProduct ; rdfs:label "ProKN GO Enables Edges" ; dcterms:description "GO protein enables GO term edges" ; schema1:url . kgr:prokn.go.protein.involved_in.goterm.edges a schema1:GraphProduct ; rdfs:label "ProKN GO Involved In Edges" ; dcterms:description "GO protein involved in GO term edges" ; schema1:url . kgr:prokn.go.protein.is_active_in.goterm.edges a schema1:GraphProduct ; rdfs:label "ProKN GO Active In Edges" ; dcterms:description "GO protein active in GO term edges" ; schema1:url . kgr:prokn.go.protein.located_in.goterm.edges a schema1:GraphProduct ; rdfs:label "ProKN GO Located In Edges" ; dcterms:description "GO protein located in GO term edges" ; schema1:url . kgr:prokn.go.protein.not_acts_upstream_of_or_within.goterm.edges a schema1:GraphProduct ; rdfs:label "ProKN GO Not Acts Upstream Or Within Edges" ; dcterms:description "GO protein not acts upstream of or within edges" ; schema1:url . kgr:prokn.go.protein.not_acts_upstream_of_or_within_negative_effect.goterm.edges a schema1:GraphProduct ; rdfs:label "ProKN GO Not Acts Upstream Negative Edges" ; dcterms:description "GO protein not acts upstream of or within negative effect edges" ; schema1:url . kgr:prokn.go.protein.not_colocalizes_with.goterm.edges a schema1:GraphProduct ; rdfs:label "ProKN GO Not Colocalizes Edges" ; dcterms:description "GO protein not colocalizes with GO term edges" ; schema1:url . kgr:prokn.go.protein.not_contributes_to.goterm.edges a schema1:GraphProduct ; rdfs:label "ProKN GO Not Contributes Edges" ; dcterms:description "GO protein not contributes to GO term edges" ; schema1:url . kgr:prokn.go.protein.not_enables.goterm.edges a schema1:GraphProduct ; rdfs:label "ProKN GO Not Enables Edges" ; dcterms:description "GO protein not enables GO term edges" ; schema1:url . kgr:prokn.go.protein.not_involved_in.goterm.edges a schema1:GraphProduct ; rdfs:label "ProKN GO Not Involved In Edges" ; dcterms:description "GO protein not involved in GO term edges" ; schema1:url . kgr:prokn.go.protein.not_is_active_in.goterm.edges a schema1:GraphProduct ; rdfs:label "ProKN GO Not Active In Edges" ; dcterms:description "GO protein not active in GO term edges" ; schema1:url . kgr:prokn.go.protein.not_located_in.goterm.edges a schema1:GraphProduct ; rdfs:label "ProKN GO Not Located In Edges" ; dcterms:description "GO protein not located in GO term edges" ; schema1:url . kgr:prokn.go.protein.not_part_of.goterm.edges a schema1:GraphProduct ; rdfs:label "ProKN GO Not Part Of Edges" ; dcterms:description "GO protein not part of GO term edges" ; schema1:url . kgr:prokn.go.protein.part_of.goterm.edges a schema1:GraphProduct ; rdfs:label "ProKN GO Part Of Edges" ; dcterms:description "GO protein part of GO term edges" ; schema1:url . kgr:prokn.gtexexp.anatomy.nodes a schema1:GraphProduct ; rdfs:label "ProKN GTEx Anatomy Nodes" ; dcterms:description "GTEx expression anatomy nodes (GTEXEXP) used in ProKN" ; schema1:url . kgr:prokn.gtexexp.gene.expressed_in.anatomy.edges a schema1:GraphProduct ; rdfs:label "ProKN GTEx Gene Expression Edges" ; dcterms:description "GTEx gene expressed in anatomy edges" ; schema1:url . kgr:prokn.gtexexp.gtexexp.expressed_in.anatomy.edges a schema1:GraphProduct ; rdfs:label "ProKN GTExEXP Anatomy Expression Edges" ; dcterms:description "GTEx expression to anatomy edges (GTExEXP node type)" ; schema1:url . kgr:prokn.gtexexp.gtexexp.expressed_in.gene.edges a schema1:GraphProduct ; rdfs:label "ProKN GTExEXP Gene Expression Edges" ; dcterms:description "GTEx expression to gene edges (GTExEXP node type)" ; schema1:url . kgr:prokn.gtexexp.gtexexp.has_expression.expbins.edges a schema1:GraphProduct ; rdfs:label "ProKN GTExEXP Expression Bin Edges" ; dcterms:description "GTEx expression to expression bins edges" ; schema1:url . kgr:prokn.hgnchpo.gene.associated_with.diseaseorphenotype.edges a schema1:GraphProduct ; rdfs:label "ProKN HPO Gene-to-Phenotype Association Edges" ; dcterms:description "HPO gene-to-phenotype association edges" ; schema1:url . kgr:prokn.hmaz.anatomy.has_marker_gene_in_heart.gene.edges a schema1:GraphProduct ; rdfs:label "ProKN HuBMAP Azimuth Heart Marker Edges" ; dcterms:description "HuBMAP Azimuth anatomy to heart marker gene edges" ; schema1:url . kgr:prokn.hmaz.anatomy.has_marker_gene_in_kidney.gene.edges a schema1:GraphProduct ; rdfs:label "ProKN HuBMAP Azimuth Kidney Marker Edges" ; dcterms:description "HuBMAP Azimuth anatomy to kidney marker gene edges" ; schema1:url . kgr:prokn.hmaz.anatomy.has_marker_gene_in_liver.gene.edges a schema1:GraphProduct ; rdfs:label "ProKN HuBMAP Azimuth Liver Marker Edges" ; dcterms:description "HuBMAP Azimuth anatomy to liver marker gene edges" ; schema1:url . kgr:prokn.hmaz.anatomy.nodes a schema1:GraphProduct ; rdfs:label "ProKN HuBMAP Azimuth Anatomy Nodes" ; dcterms:description "HuBMAP Azimuth anatomy nodes used in ProKN" ; schema1:url . kgr:prokn.idgd.compound.indication.diseaseorphenotype.edges a schema1:GraphProduct ; rdfs:label "ProKN TCRD Compound-Disease Indication Edges" ; dcterms:description "TCRD compound indication edges to disease and phenotype terms" ; schema1:url . kgr:prokn.idgd.compound.nodes a schema1:GraphProduct ; rdfs:label "ProKN TCRD Compound-Disease Compound Nodes" ; dcterms:description "IDG/TCRD compound-disease nodes used in ProKN" ; schema1:url . kgr:prokn.idgp.compound.bioactivity.protein.edges a schema1:GraphProduct ; rdfs:label "ProKN TCRD Compound-Protein Bioactivity Edges" ; dcterms:description "TCRD compound bioactivity to protein edges" ; schema1:url . kgr:prokn.idgp.compound.nodes a schema1:GraphProduct ; rdfs:label "ProKN TCRD Compound-Protein Compound Nodes" ; dcterms:description "IDG/TCRD compound-protein nodes used in ProKN" ; schema1:url . kgr:prokn.imex.complex.nodes a schema1:GraphProduct ; rdfs:label "ProKN IMEx Complex Nodes" ; dcterms:description "IMEx complex nodes used in ProKN" ; schema1:url . kgr:prokn.imex.protein.interacts_with.protein.edges a schema1:GraphProduct ; rdfs:label "ProKN IMEx Protein Interaction Edges" ; dcterms:description "IMEx protein interacts with protein edges" ; schema1:url . kgr:prokn.imex.protein.participates_in.complex.edges a schema1:GraphProduct ; rdfs:label "ProKN IMEx Protein Participates In Complex Edges" ; dcterms:description "IMEx protein participates in complex edges" ; schema1:url . kgr:prokn.impc.impcallele.impc_ensembl_id.impcmousegene.edges a schema1:GraphProduct ; rdfs:label "ProKN IMPC Allele to Mouse Gene Edges" ; dcterms:description "IMPC allele to mouse gene edges" ; schema1:url . kgr:prokn.impc.impchumangene.interacts_with.impchumangene.edges a schema1:GraphProduct ; rdfs:label "ProKN IMPC Human-Human Interaction Edges" ; dcterms:description "IMPC human gene interacts with human gene edges" ; schema1:url . kgr:prokn.impc.impchumangene.interacts_with.impcmousegene.edges a schema1:GraphProduct ; rdfs:label "ProKN IMPC Human-Mouse Interaction Edges" ; dcterms:description "IMPC human gene interacts with mouse gene edges" ; schema1:url . kgr:prokn.impc.impchumangene.orthologous_to.impcmousegene.edges a schema1:GraphProduct ; rdfs:label "ProKN IMPC Ortholog Edges" ; dcterms:description "IMPC human gene orthologous to mouse gene edges" ; schema1:url . kgr:prokn.impc.impcmousegene.impc_mouse_allele_id.impcallele.edges a schema1:GraphProduct ; rdfs:label "ProKN IMPC Mouse Allele ID Edges" ; dcterms:description "IMPC mouse gene allele ID edges" ; schema1:url . kgr:prokn.impc.impcmousegene.impc_mouse_alleles.impcallele.edges a schema1:GraphProduct ; rdfs:label "ProKN IMPC Mouse Alleles Edges" ; dcterms:description "IMPC mouse gene allele membership edges" ; schema1:url . kgr:prokn.impc.impcmousegene.interacts_with.impchumangene.edges a schema1:GraphProduct ; rdfs:label "ProKN IMPC Mouse-Human Interaction Edges" ; dcterms:description "IMPC mouse gene interacts with human gene edges" ; schema1:url . kgr:prokn.impc.impcmousegene.interacts_with.impcmousegene.edges a schema1:GraphProduct ; rdfs:label "ProKN IMPC Mouse-Mouse Interaction Edges" ; dcterms:description "IMPC mouse gene interacts with mouse gene edges" ; schema1:url . kgr:prokn.impc.impcmousegene.orthologous_to.impchumangene.edges a schema1:GraphProduct ; rdfs:label "ProKN IMPC Mouse-Human Ortholog Edges" ; dcterms:description "IMPC mouse gene orthologous to human gene edges" ; schema1:url . kgr:prokn.impc.imppublication.impc_alleles.impcallele.edges a schema1:GraphProduct ; rdfs:label "ProKN IMPC Publication Allele Edges" ; dcterms:description "IMPC publication allele edges" ; schema1:url . kgr:prokn.interpro.domain.is_a.domain.edges a schema1:GraphProduct ; rdfs:label "ProKN InterPro Domain Hierarchy Edges" ; dcterms:description "InterPro domain is_a domain edges" ; schema1:url . kgr:prokn.interpro.protein.has_domain.domain.edges a schema1:GraphProduct ; rdfs:label "ProKN InterPro Domain Edges" ; dcterms:description "InterPro protein has domain edges" ; schema1:url . kgr:prokn.iptmnet.protein.catalyzes.ptmsite.edges a schema1:GraphProduct ; rdfs:label "ProKN iPTMnet Protein Catalyzes PTM Site Edges" ; dcterms:description "iPTMnet protein catalyzes PTM site edges" ; schema1:url . kgr:prokn.iptmnet.protein.has_site.site.edges a schema1:GraphProduct ; rdfs:label "ProKN iPTMnet Protein Site Edges" ; dcterms:description "iPTMnet protein has site edges" ; schema1:url . kgr:prokn.lincs.compound.in_similarity_relationship_with.compound.edges a schema1:GraphProduct ; rdfs:label "ProKN LINCS Compound Similarity Edges" ; dcterms:description "LINCS compound similarity edges" ; schema1:url . kgr:prokn.lincs.compound.negatively_regulates.gene.edges a schema1:GraphProduct ; rdfs:label "ProKN LINCS Negative Regulation Edges" ; dcterms:description "LINCS compound negatively regulates gene edges" ; schema1:url . kgr:prokn.lincs.compound.positively_regulates.gene.edges a schema1:GraphProduct ; rdfs:label "ProKN LINCS Positive Regulation Edges" ; dcterms:description "LINCS compound positively regulates gene edges" ; schema1:url . kgr:prokn.lincs_p100.experiment.perturbation_effect.ptmsite.edges a schema1:GraphProduct ; rdfs:label "ProKN LINCS P100 Perturbation Effect Edges" ; dcterms:description "LINCS P100 experiment perturbation effect on PTM site edges" ; schema1:url . kgr:prokn.lincs_p100.perturbagen.is_used_in.experiment.edges a schema1:GraphProduct ; rdfs:label "ProKN LINCS P100 Perturbagen Edges" ; dcterms:description "LINCS P100 perturbagen experiment edges" ; schema1:url . kgr:prokn.lincs_p100.ptmsite.is_site.site.edges a schema1:GraphProduct ; rdfs:label "ProKN LINCS P100 PTM Site Mapping Edges" ; dcterms:description "LINCS P100 PTM site is site of site edges" ; schema1:url . kgr:prokn.msigdb.msigdb.chr_band_contains_gene.gene.edges a schema1:GraphProduct ; rdfs:label "ProKN MSIGDB Chromosome Band Edges" ; dcterms:description "MSIGDB chromosome band contains gene edges" ; schema1:url . kgr:prokn.msigdb.msigdb.has_marker_gene.gene.edges a schema1:GraphProduct ; rdfs:label "ProKN MSIGDB Marker Gene Edges" ; dcterms:description "MSIGDB marker gene edges" ; schema1:url . kgr:prokn.msigdb.msigdb.has_signature_gene.gene.edges a schema1:GraphProduct ; rdfs:label "ProKN MSIGDB Signature Gene Edges" ; dcterms:description "MSIGDB signature gene edges" ; schema1:url . kgr:prokn.msigdb.msigdb.pathway_associated_with_gene.gene.edges a schema1:GraphProduct ; rdfs:label "ProKN MSIGDB Pathway Gene Edges" ; dcterms:description "MSIGDB pathway associated with gene edges" ; schema1:url . kgr:prokn.msigdb.msigdb.targets_expression_of_gene.gene.edges a schema1:GraphProduct ; rdfs:label "ProKN MSIGDB Targets Expression Edges" ; dcterms:description "MSIGDB targets expression of gene edges" ; schema1:url . kgr:prokn.pir.compound.skos_exact_match.compound.edges a schema1:GraphProduct ; rdfs:label "ProKN PIR Compound Exact Match Edges" ; dcterms:description "PIR compound exact match edges" ; schema1:url . kgr:prokn.pir.gene.skos_exact_match.impc_gene.edges a schema1:GraphProduct ; rdfs:label "ProKN PIR Gene Exact Match Edges" ; dcterms:description "PIR gene exact match to IMPC human gene edges" ; schema1:url . kgr:prokn.pir.gene.skos_exact_match.impchumangene.edges a schema1:GraphProduct ; rdfs:label "ProKN PIR Gene Exact Match Edges" ; dcterms:description "PIR gene exact match to IMPC human gene edges" ; schema1:url . kgr:prokn.reactome.pathway.event_of.pathway.edges a schema1:GraphProduct ; rdfs:label "ProKN Reactome Pathway Event Edges" ; dcterms:description "Reactome pathway event hierarchy edges" ; schema1:url . kgr:prokn.reactome.protein.participates_in.pathway.edges a schema1:GraphProduct ; rdfs:label "ProKN Reactome Protein Pathway Edges" ; dcterms:description "Reactome protein participates in pathway edges" ; schema1:url . kgr:prokn.uniprotkb.protein.has_site.site.edges a schema1:GraphProduct ; rdfs:label "ProKN UniProtKB Protein Site Edges" ; dcterms:description "UniProtKB protein has site edges" ; schema1:url . kgr:prokn.uniprotkb.protein.has_variant.variant.edges a schema1:GraphProduct ; rdfs:label "ProKN UniProtKB Variant Edges" ; dcterms:description "UniProtKB protein variant edges" ; schema1:url . kgr:proteomehd.intact_interactions a schema1:Product ; rdfs:label "ProteomeHD IntAct Interactions" ; dcterms:description "Pre-processed human IntAct interaction file used in ProteomeHD comparisons" ; schema1:url . kgr:proteomehd.reactome_tp_fp a schema1:Product ; rdfs:label "ProteomeHD Reactome Gold Standard" ; dcterms:description "Reactome-derived true-positive and false-positive protein-pair gold standard used in ProteomeHD analyses" ; schema1:url . kgr:proteomehd.uniprot_annotations a schema1:Product ; rdfs:label "ProteomeHD UniProt Annotation File" ; dcterms:description "Reviewed UniProt protein annotation file used in ProteomeHD analyses" ; schema1:url . kgr:ptmd.phosphorylation_pda a schema1:Product ; rdfs:label "PTMD Phosphorylation PTM-Disease Associations" ; dcterms:description "PTMD 2.0 PTM-disease association subset for phosphorylation modification events" ; schema1:url . kgr:pubmed-knowledge-graph.website a schema1:GraphicalInterface ; rdfs:label "PubMed Knowledge Graph Homepage" ; dcterms:description "Project homepage for the PubMed Knowledge Graph, providing dataset documentation and download access." ; schema1:url . kgr:rdf-portal.sparql.ddbj a schema1:ProgrammingInterface ; rdfs:label "RDF Portal DDBJ SPARQL Endpoint" ; dcterms:description "SPARQL endpoint for the DDBJ RDF dataset." ; schema1:url . kgr:rdf-portal.sparql.pdb a schema1:ProgrammingInterface ; rdfs:label "RDF Portal PDB SPARQL Endpoint" ; dcterms:description "SPARQL endpoint for Protein Data Bank RDF datasets (wwPDB/RDF and BMRB/RDF)." ; schema1:url . kgr:rdf-portal.sparql.pubchem a schema1:ProgrammingInterface ; rdfs:label "RDF Portal PubChem SPARQL Endpoint" ; dcterms:description "SPARQL endpoint for PubChem RDF." ; schema1:url . kgr:reactome.go-associations.txt a schema1:Product ; rdfs:label "Reactome Gene Association File" ; dcterms:description "Gene association file for Reactome GO annotations" ; schema1:url . kgr:reactome.pathways.go-terms.txt a schema1:Product ; rdfs:label "Reactome Pathways to GO Terms" ; dcterms:description "Mapping from Reactome pathways to Gene Ontology terms" ; schema1:url . kgr:repohub.sample-info.tsv a schema1:Product ; rdfs:label "Drug Repurposing Hub Sample Information TSV" ; dcterms:description "Latest physical sample-level metadata including Broad sample IDs, vendor catalog numbers, SMILES, InChIKey, and PubChem IDs (listed as version 2025-08-19 on the site)." ; schema1:url . kgr:retriever.api a schema1:ProgrammingInterface ; rdfs:label "Retriever TRAPI API" ; dcterms:description "Production TRAPI 1.6 Knowledge Provider endpoint (/query, /asyncquery, /meta_knowledge_graph)." ; schema1:url . kgr:ribocentre.search a schema1:GraphicalInterface ; rdfs:label "Sequence Search" ; dcterms:description "Search functionality integrated with RNAcentral for sequence searching" ; schema1:url . kgr:rlims-p.portal a schema1:GraphicalInterface ; rdfs:label "RLIMS-P Web Portal" ; dcterms:description "RLIMS-P web portal for searching phosphorylation information by keywords, organisms, date range, and PubMed identifiers, with extracted kinase, substrate, site, evidence text, and downloadable results." ; schema1:url . kgr:rlims-p.text-mining-service a schema1:ProcessProduct ; rdfs:label "RLIMS-P Text-Mining Service" ; dcterms:description "Rule-based text-mining service for extracting protein phosphorylation events, including kinase, substrate, phosphorylation site, and textual evidence, from PubMed abstracts and selected literature corpora." ; schema1:url . kgr:scales.graph a schema1:GraphProduct ; rdfs:label "SCALES Knowledge Graph" ; dcterms:description "SCALES knowledge graph of U.S. federal court records, derived from PACER data and served via the SCALES SPARQL and Triple Pattern Fragments endpoints." ; schema1:url . kgr:scibite.hgnc a schema1:Product ; rdfs:label "SciBite HGNC" ; dcterms:description "This HGNC OWL file is generated from the data at https://www.genenames.org/. It contains all genes in HGNC organised in a shallow hierarchy, classified by their locus type and gene group. Gene groups are also derived from HGNC. The ontology contains approved gene symbol, approved gene name, previous names and symbols and mappings to external databases." ; schema1:url . kgr:semopenalex.graph a schema1:GraphProduct ; rdfs:label "SemOpenAlex RDF Graph" ; dcterms:description "RDF graph representation of the OpenAlex scholarly data as Linked Open Data, distributed as Turtle (TTL) snapshots via the SemOpenAlex code and data repository." ; schema1:url . kgr:service-kp.code a schema1:ProcessProduct ; rdfs:label "Service KP Source Code" ; dcterms:description "BioThings API stack source repository used by the Service Provider team." ; schema1:url . kgr:shepherd.api a schema1:ProgrammingInterface ; rdfs:label "Shepherd TRAPI API" ; dcterms:description "Production Shepherd service (TRAPI 1.5.0, version 1.1.7 when checked on 2026-10-04), with endpoints to check the status of asynchronous queries and fetch stored responses for all hosted ARAs." ; schema1:url . kgr:shepherd.sipr.api a schema1:ProgrammingInterface ; rdfs:label "Shepherd SIPR TRAPI API" ; dcterms:description "TRAPI query endpoint for the SIPR ARA within Shepherd (/query and /asyncquery), which uses a PageRank algorithm to answer set input queries over knowledge from Retriever." ; schema1:url . kgr:sifr-bioportal.annotator a schema1:ProcessProduct ; rdfs:label "SIFR Annotator" ; dcterms:description "SIFR Annotator, a semantic annotation service for French biomedical text and clinical notes that tags text with concepts from the ontologies hosted in SIFR BioPortal. It ports the NCBO Annotator to French, adding lemmatization, negation, experiencer and temporality detection, and scoring. Available as a web form and through the REST API (/annotator, API key required)." ; schema1:url . kgr:sifr-bioportal.api a schema1:ProgrammingInterface ; rdfs:label "SIFR BioPortal REST API" ; dcterms:description "OntoPortal REST API for ontologies, classes, search, mappings, metrics, submissions, and the annotator. Endpoints require a free SIFR BioPortal API key." ; schema1:url . kgr:sifr-bioportal.portal a schema1:GraphicalInterface ; rdfs:label "SIFR BioPortal Portal" ; dcterms:description "Web portal for searching, browsing, and visualizing French biomedical ontologies and terminologies and the mappings between them, with recommender and landscape views." ; schema1:url . kgr:sldb.data a schema1:Product ; rdfs:label "SLDB Interaction Table" ; dcterms:description "Tab-separated export of curated synthetic lethal interaction assertions, perturbations, assay context, and source PMIDs generated by the SLDB pipeline." ; schema1:url . kgr:snomedct.icd10cm.map a schema1:MappingProduct ; rdfs:label "SNOMED CT to ICD-10-CM Map" ; dcterms:description "The biannual release of the SNOMED CT to ICD-10-CM Map, which maps SNOMED CT concepts to ICD-10-CM codes." ; schema1:url . kgr:spoke-genelab.sparql a schema1:ProgrammingInterface ; rdfs:label "SPOKE GeneLab SPARQL" ; dcterms:description "SPARQL endpoint for SPOKE GeneLab" ; schema1:url . kgr:spoke-genelab.tpf a schema1:ProgrammingInterface ; rdfs:label "SPOKE GeneLab TPF" ; dcterms:description "Triple Pattern Fragments endpoint for SPOKE GeneLab" ; schema1:url . kgr:sudokn.graph a schema1:GraphProduct ; rdfs:label "SUDOKN Manufacturing Capability Graph" ; dcterms:description "The SUDOKN manufacturing capability knowledge graph in RDF (Turtle), representing the capabilities of small and medium-sized U.S. manufacturers. Company profiles (manufacturing processes, materials, industries served, certifications, NAICS classification, and locations) are built by web-scraping raw text from manufacturer company websites and extracting triples with an LLM-based ETL pipeline, using terms from the SUDOKN application ontology (built on the Industrial Ontology Foundry and Basic Formal Ontology). Served through the SUDOKN SPARQL and Triple Pattern Fragments endpoints." ; schema1:url . kgr:sugi-atlas.manifest a schema1:Product ; rdfs:label "Sugi Atlas Manifest" ; dcterms:description "JSON manifest of the atlas corpus, mapping page slugs to canonical names and synonyms for genes, drugs, diseases and pathways (about 12.8 MB when checked on 2026-10-04)." ; schema1:url . kgr:suppkg.docs a schema1:DocumentationProduct ; rdfs:label "SuppKG Documentation" ; dcterms:description "Translator wiki page describing SuppKG scope and example supplement-disease relationships." ; schema1:url . kgr:swisslipid.evidences a schema1:Product ; rdfs:label "SwissLipids Evidences" ; dcterms:description "TSV export of evidence annotations including ECO terms and supporting PMIDs." ; schema1:url . kgr:swisslipid.go a schema1:Product ; rdfs:label "SwissLipids GO Annotations" ; dcterms:description "TSV export of SwissLipids links to Gene Ontology terms with taxon context." ; schema1:url . kgr:swisslipid.lipids2uniprot a schema1:MappingProduct ; rdfs:label "SwissLipids Lipids to UniProt" ; dcterms:description "TSV mapping between SwissLipids lipid entries and UniProtKB proteins." ; schema1:url . kgr:tera.traits-nt a schema1:Product ; rdfs:label "EOL Traits Data (N-Triples)" ; dcterms:description "Encyclopedia of Life traits data in N-Triples RDF format" ; schema1:url . kgr:text-mining-kp.graph a schema1:GraphProduct ; rdfs:label "Text Mining KP Release Files" ; dcterms:description "Release files for the Text Mining KP" ; schema1:url . kgr:togows.ucsc-api a schema1:ProgrammingInterface ; rdfs:label "TogoWS UCSC API" ; dcterms:description "REST API over the public UCSC Genome Browser MySQL databases, for listing genome assemblies, tables and columns, querying table rows by column values, and retrieving genomic sequence ranges." ; schema1:url . kgr:ttd.kegg-pathways a schema1:Product ; rdfs:label "Target KEGG Pathways" ; dcterms:description "KEGG pathway data for all targets" ; schema1:url . kgr:ttd.uniprot-all a schema1:Product ; rdfs:label "All Target UniProt IDs" ; dcterms:description "UniProt IDs for all targets in TTD" ; schema1:url . kgr:ttd.wiki-pathways a schema1:Product ; rdfs:label "Target WikiPathways" ; dcterms:description "WikiPathways data for all targets" ; schema1:url . kgr:ubkg.guesdt a schema1:GraphicalInterface ; rdfs:label "UBKG Guesdt Interface" ; dcterms:description "Guesdt (Graphing UMLS Enables Search In Dynamic Trees) application used to represent the UBKG in a tree view." ; schema1:url . kgr:unibiomap.go_desc a schema1:GraphProduct ; rdfs:label "UniBioMap GO Descriptions" ; dcterms:description "UniBioMap Gene Ontology entity descriptions." ; schema1:url . kgr:unibiomap.phenotype_desc a schema1:GraphProduct ; rdfs:label "UniBioMap Phenotype Descriptions" ; dcterms:description "UniBioMap phenotype entity descriptions." ; schema1:url . kgr:unibiomap.protein_desc a schema1:GraphProduct ; rdfs:label "UniBioMap Protein Descriptions" ; dcterms:description "UniBioMap protein entity descriptions." ; schema1:url . kgr:wikimedia a "Organization" ; rdfs:label "Wikimedia Foundation" . kgr:yoda.trial-catalog a schema1:GraphicalInterface ; rdfs:label "YODA Trial Catalog" ; dcterms:description "Searchable, filterable catalog of clinical trials whose individual participant-level data and clinical study reports are available for request, listed by ClinicalTrials.gov NCT number and filterable by Data Partner and generic drug or device name." ; schema1:url . kgr:zirc.fish-catalog a schema1:GraphicalInterface ; rdfs:label "ZIRC Zebrafish Lines Catalog" ; dcterms:description "Searchable web catalog of wild-type, mutant and transgenic zebrafish lines held at ZIRC, with genotype, allele, construct, affected gene, phenotype and availability, linked to the corresponding ZFIN records." ; schema1:url . kgr:amyco.annotations a schema1:Product ; rdfs:label "AmyCo Curated Annotations" ; dcterms:description "Manually curated disease-gene associations and annotations for amyloidoses and amyloid deposition-related diseases extracted from biomedical literature." . kgr:automat.alliance-orthologs a schema1:GraphProduct ; rdfs:label "GenomeAllianceOrthologs_Automat" ; dcterms:description "Alliance of Genome Resources Orthologs Automat: per-source KGX knowledge graph download (Biolink 4.2.1)." ; schema1:url . kgr:automat.binding a schema1:GraphProduct ; rdfs:label "BINDING_Automat" ; dcterms:description "BindingDB Automat: per-source KGX knowledge graph download (Biolink 4.2.1)." ; schema1:url . kgr:automat.biolink a schema1:GraphProduct ; rdfs:label "biolink_automat" ; dcterms:description "Biolink Automat: graph based on the Monarch API, from the SRI Reference KG (2021 data, Biolink 3.1.2; legacy)." ; schema1:url . kgr:automat.camkp a schema1:GraphProduct ; rdfs:label "CAMKP_Automat" ; dcterms:description "CAM-KP Automat: per-source KGX knowledge graph download (Biolink 4.2.1)." ; schema1:url . kgr:automat.cebs a schema1:GraphProduct ; rdfs:label "CEBS_Automat" ; dcterms:description "CEBS Automat: per-source KGX knowledge graph download (Biolink 4.2.6)." ; schema1:url . kgr:automat.cohd a schema1:GraphProduct ; rdfs:label "COHD_Automat" ; dcterms:description "COHD Automat: per-source KGX knowledge graph download (Biolink 4.2.1)." ; schema1:url . kgr:automat.ctkp a schema1:GraphProduct ; rdfs:label "CTKP_Automat" ; dcterms:description "Clinical Trials KP Automat: per-source KGX knowledge graph download (Biolink 4.2.1)." ; schema1:url . kgr:automat.ehr-clinical-connections a schema1:GraphProduct ; rdfs:label "EHR_Clinical_Connections_Automat" ; dcterms:description "EHR Clinical Connections Automat: per-source KGX knowledge graph download (Biolink 4.2.1)." ; schema1:url . kgr:automat.maytreatkp a schema1:GraphProduct ; rdfs:label "MayTreatKP_Automat" ; dcterms:description "EHR May Treat KP Automat: per-source KGX knowledge graph download (Biolink 4.2.1)." ; schema1:url . kgr:automat.molepro a schema1:GraphProduct ; rdfs:label "MolePro_Automat" ; dcterms:description "MolePro Automat: per-source KGX knowledge graph download (Biolink 4.2.1)." ; schema1:url . kgr:automat.reactome a schema1:GraphProduct ; rdfs:label "Reactome_Automat" ; dcterms:description "Reactome Automat: per-source KGX knowledge graph download (Biolink 4.2.1)." ; schema1:url . kgr:automat.tmkp a schema1:GraphProduct ; rdfs:label "TMKP_Automat" ; dcterms:description "Text Mining KP Automat: per-source KGX knowledge graph download (Biolink 4.2.1)." ; schema1:url . kgr:automat.viralproteome a schema1:GraphProduct ; rdfs:label "ViralProteome_Automat" ; dcterms:description "Viral Proteome Automat: per-source KGX knowledge graph download (Biolink 4.2.1)." ; schema1:url . kgr:bbmri-eric-directory.csv a schema1:Product ; rdfs:label "BBMRI-ERIC Directory CSV Export" ; dcterms:description "Full export of the Directory's ERIC schema as a ZIP archive of CSV files, one per table (Biobanks, Collections, CollectionFacts, Studies, Networks, Persons and others)." ; schema1:url . kgr:bbmri-eric-directory.ttl a schema1:GraphProduct ; rdfs:label "BBMRI-ERIC Directory RDF Export" ; dcterms:description "RDF export of the Directory's ERIC schema serialized as Turtle, generated by MOLGENIS EMX2 from the Directory tables." ; schema1:url . kgr:biodata-catalyst.analysis-platforms a schema1:GraphicalInterface ; rdfs:label "BDC Analysis Platforms (Terra and Seven Bridges)" ; dcterms:description "Cloud analysis workspaces available within BDC, the Seven Bridges BDC platform (https://platform.sb.biodatacatalyst.nhlbi.nih.gov/) and BDC Terra, where authorized users run workflows, notebooks and genomic tools on hosted data. Both require login." ; schema1:url . kgr:biodata-catalyst.gen3 a schema1:GraphicalInterface ; rdfs:label "BDC Gen3 Data Commons" ; dcterms:description "BDC Gen3 data commons for browsing study metadata, checking authorized data access and exporting controlled-access TOPMed and other NHLBI study files to the analysis workspaces." ; schema1:url . kgr:biodata-catalyst.picsure-api a schema1:ProgrammingInterface ; rdfs:label "BDC PIC-SURE API" ; dcterms:description "PIC-SURE REST API for programmatic query and export of BDC study variables, used through the PicSureClient and PicSureBdcAdapter Python packages (and an R client) with a personal access token from the PIC-SURE interface." ; schema1:url . kgr:bioportal.api a schema1:ProgrammingInterface ; rdfs:label "BioPortal REST API" ; dcterms:description "REST API for ontology concepts, search, mappings, metrics, and downloads. Most endpoints require a free BioPortal API key." ; schema1:url . kgr:bioportal.portal a schema1:GraphicalInterface ; rdfs:label "BioPortal Portal" ; dcterms:description "Web portal for searching, browsing, and visualizing biomedical ontologies and mappings" ; schema1:url . kgr:biostudies.ftp a schema1:Product ; rdfs:label "BioStudies FTP Archive" ; dcterms:description "FTP/HTTPS archive of BioStudies study files, organized by accession prefix, including Europe PMC supplementary data and ArrayExpress experiment files." ; schema1:url . kgr:biothings-explorer.trapi a schema1:ProgrammingInterface ; rdfs:label "BioThings Explorer TRAPI API" ; dcterms:description "Production TRAPI 1.5 endpoint of BioThings Explorer for federated multi-hop queries over SmartAPI-registered biomedical APIs, with synchronous, asynchronous and pathfinder query support." ; schema1:url . kgr:brain-cell-kg.repository a schema1:ProcessProduct ; rdfs:label "Brain_Cell_KG repository" ; dcterms:description "Build system for Brain_Cell_KG. A Docker Compose OBASK pipeline fetches the source OWL/RDF files listed in config/collectdata, loads them into an RDF4J triplestore and builds a Neo4j knowledge graph; Makefile targets generate ROBOT templates, OWL mapping files and Cypher-based CSV reports. No prebuilt graph dump or public Neo4j instance is released." ; schema1:url . kgr:cam-kp.ctd-interactions a schema1:Product ; rdfs:label "CTD Chemical-Gene Models" ; dcterms:description "Chemical-gene interaction models and toxicological pathways derived from the Comparative Toxicogenomics Database (CTD) covering 17,700+ chemicals and 55,400 genes" . kgr:cancer-registry-kg.cdi a schema1:Product ; rdfs:label "Concentrated Disadvantage Index Integration" ; dcterms:description "Linked neighborhood concentrated disadvantage index (CDI) dataset for Louisiana and Kentucky census tracts, enabling socioeconomic analysis of cancer incidence patterns and disparities. Demonstrates knowledge graph capability for third-party data integration to explain variation in cancer outcomes." ; schema1:url . kgr:cancer-registry-kg.kcr a schema1:GraphProduct ; rdfs:label "Kentucky Cancer Registry Knowledge Graph" ; dcterms:description "RDF-based knowledge graph containing 207,766 unique tumor records from Kentucky Cancer Registry (2010-2016) with 232 columns of cancer data. Contains 48,409,945 triples demonstrating the framework's ability to dynamically integrate multiple registry datasets without code changes." ; schema1:url . kgr:cancer-registry-kg.ltr a schema1:GraphProduct ; rdfs:label "Louisiana Tumor Registry Knowledge Graph" ; dcterms:description "RDF-based knowledge graph containing 374,682 unique tumor records from Louisiana Tumor Registry (2000-2016) with 240 columns of NAACCR-standardized cancer data including demographics, tumor characteristics, treatment, and outcomes. Contains 90,673,527 triples stored in Virtuoso triplestore with SPARQL endpoint access." ; schema1:url . kgr:canvas.imputed a schema1:Product ; rdfs:label "CanVAS imputed genotypes" ; dcterms:description "The imputed CanVAS genotype set as a PLINK binary fileset, restricted to variants with minor allele frequency at or above 1%, in CanFam4 coordinates." ; schema1:url . kgr:catalogue-of-life.annual-releases a schema1:Product ; rdfs:label "Annual Releases" ; dcterms:description "Annual comprehensive Catalogue of Life releases (Base Release with expert curation and Extended Release with broader source integration) with permanent archiving and DOI assignment" ; schema1:url . kgr:catalogue-of-life.downloads a schema1:Product ; rdfs:label "Data Downloads" ; dcterms:description "Downloadable Catalogue of Life datasets in multiple standardized formats including Catalogue of Life Data Package (ColDP), Darwin Core Archive, ACEF, TextTree, and MySQL dumps" ; schema1:url . kgr:cfde-ddkg.downloads a schema1:Product ; rdfs:label "DDKG Downloads Manifest" ; dcterms:description "JSON manifest listing downloadable DDKG resources and files." ; schema1:url . kgr:cfde-ddkg.portal a schema1:GraphicalInterface ; rdfs:label "DDKG Web Interface" ; dcterms:description "Interactive web interface for browsing and querying Data Distillery Knowledge Graph resources." ; schema1:url . kgr:cl-kg.api.neo4j a schema1:ProgrammingInterface ; rdfs:label "CL-KG Neo4j graph instance" ; dcterms:description "Publicly available Neo4j instance for CL-KG." ; schema1:url . kgr:clinpgx.portal a schema1:GraphicalInterface ; rdfs:label "ClinPGx Portal" ; dcterms:description "ClinPGx web portal for browsing genes, variants, drugs, clinical annotations, drug labels, pathways and CPIC guidelines, integrating PharmGKB and CPIC content" ; schema1:url . kgr:clo.owl a schema1:OntologyProduct ; rdfs:label "clo.owl" ; dcterms:description "Cell Line Ontology in OWL format" ; schema1:url . kgr:cngbdb.portal a schema1:GraphicalInterface ; rdfs:label "CNGBdb Portal" ; dcterms:description "CNGBdb web portal for searching CNSA records and the integrated literature, gene, protein, sequence, organism, variation and other sub-databases, which include data from NCBI and EBI." ; schema1:url . kgr:connections-hypothesis-kp.graph a schema1:GraphProduct ; rdfs:label "Connections Hypothesis KP Knowledge Graph" ; dcterms:description "Bayesian-network knowledge graph served by the Connections Hypothesis Provider over the Translator TRAPI interface. Inference is computed over a breast cancer dataset from The Cancer Genome Atlas (TCGA), supporting queries relating genetic, therapeutic, and patient clinical features to patient survival." ; schema1:url . kgr:cpathkg.code a schema1:ProcessProduct ; rdfs:label "C-Path Knowledge Graph Integration" ; dcterms:description "This repository is a code reference for the C-Path Knowledge Graph project, to increase discoverability of rare disease datasets through integration with the Monarch Knowlege Graph. Note that this is only a reference to scripts and queries associated with this project and is not provided as a runnable project because these workflows depend on an internal data catalog." ; schema1:url . kgr:ctd.chem_pathways_enriched a schema1:Product ; rdfs:label "CTD Chemical-Pathway Enriched Associations" ; dcterms:description "KEGG and Reactome pathways statistically enriched among the genes and proteins that interact with each chemical, with p-values and match counts. Also available as CSV and XML." ; schema1:url . kgr:ctd.chemicals_diseases a schema1:Product ; rdfs:label "CTD Chemical-Disease Associations" ; dcterms:description "Chemical-disease associations, both curated (direct evidence of a marker, mechanism, or therapeutic relationship) and inferred through a shared gene, with an inference score and PubMed evidence. Diseases use MeSH or OMIM identifiers. Also available as CSV and XML." ; schema1:url . kgr:ctd.diseases_pathways a schema1:Product ; rdfs:label "CTD Disease-Pathway Associations" ; dcterms:description "Disease-pathway associations inferred through a shared gene, linking MeSH or OMIM diseases to KEGG and Reactome pathways. Also available as CSV and XML." ; schema1:url . kgr:ctd.genes_pathways a schema1:Product ; rdfs:label "CTD Gene-Pathway Associations" ; dcterms:description "Gene-pathway associations linking NCBI Gene identifiers to KEGG and Reactome pathways. Also available as CSV and XML." ; schema1:url . kgr:ctd.medic a schema1:OntologyProduct ; rdfs:label "CTD Disease Vocabulary (MEDIC)" ; dcterms:description "MEDIC, CTD's disease vocabulary, a modified subset of the MeSH Diseases branch merged with genetic disorders from OMIM, with definitions, alternative identifiers, parent terms, tree numbers, synonyms, and MEDIC-Slim category mappings. Also available as CSV, TSV, and XML." ; schema1:url . kgr:ctd.pathways a schema1:Product ; rdfs:label "CTD Pathway Vocabulary" ; dcterms:description "CTD's pathway vocabulary, a list of pathway names with their KEGG or Reactome identifiers. Also available as CSV and XML." ; schema1:url . kgr:ctkp.smartapi a schema1:DocumentationProduct ; rdfs:label "Clinical Trials KP SmartAPI Registration" ; dcterms:description "SmartAPI registry entry for the Multiomics Clinical Trials KP TRAPI 1.5 endpoint." ; schema1:url . kgr:darkkinasekb.expression a schema1:GraphicalInterface ; rdfs:label "DKK Expression Browser" ; dcterms:description "Expression browser data and source code showing tissue-specific expression of dark kinases using GTEx RNA-seq and Human Proteome Map data with kinome-wide comparisons. The hosted Shiny application formerly at expression.darkkinome.org has been retired; the underlying data and code remain available in this GitHub repository." ; schema1:url . kgr:dbpedia.latest-core a schema1:GraphProduct ; rdfs:label "DBpedia Latest Core Collection" ; dcterms:description "Databus collection for the latest core DBpedia release used by the main SPARQL endpoint and linked data interface." ; schema1:url . kgr:dbptm.downloads a schema1:Product ; rdfs:label "dbPTM Download Datasets" ; dcterms:description "dbPTM downloads for experimental and putative PTM sites, benchmark datasets, and cancer proteomics datasets, with PTM records mapped to UniProtKB protein entries and linked to literature evidence." ; schema1:url . kgr:dbsno.downloads a schema1:Product ; rdfs:label "dbSNO Download Dataset" ; dcterms:description "Tab-delimited dbSNO 3.0 S-nitrosylation dataset containing UniProt identifiers, organisms, positions, and sequence context for manually curated and experimentally identified S-nitrosylated peptides." ; schema1:url . kgr:ddbj.arsa a schema1:GraphicalInterface ; rdfs:label "DDBJ ARSA" ; dcterms:description "ARSA (All-round Retrieval of Sequence and Annotation), a keyword and field search over INSDC nucleotide sequence records held at DDBJ." ; schema1:url . kgr:ddbj.dra a schema1:Product ; rdfs:label "DDBJ Sequence Read Archive (DRA)" ; dcterms:description "DDBJ Sequence Read Archive (DRA) download area with FASTQ, SRA and SRA Lite files and run metadata for high-throughput sequencing submissions, exchanged with NCBI SRA and ENA." ; schema1:url . kgr:ddbj.getentry a schema1:ProgrammingInterface ; rdfs:label "DDBJ getentry" ; dcterms:description "getentry, a web service and URL-based API for retrieving INSDC nucleotide entries, translated protein entries and related records by accession number, in flat file, FASTA and other formats." ; schema1:url . kgr:ddbj.release a schema1:Product ; rdfs:label "DDBJ Release Files" ; dcterms:description "Release flat files of the DDBJ nucleotide sequence database (division files such as ddbjbct*.seq.gz, accession indexes and file lists for release 143 at time of curation), plus TLS, TSA and WGS file lists." ; schema1:url . kgr:ddbj.search a schema1:GraphicalInterface ; rdfs:label "DDBJ Search" ; dcterms:description "Search interface for metadata across DDBJ, DRA, BioProject, BioSample and JGA (study, dataset and policy records), with entry pages linking related records." ; schema1:url . kgr:disprot.idpo a schema1:OntologyProduct ; rdfs:label "IDP Ontology (IDPO)" ; dcterms:description "IDP Ontology (IDPO) for representing functional aspects of intrinsically disordered proteins" ; schema1:url . kgr:edam.csv a schema1:OntologyProduct ; rdfs:label "EDAM CSV" ; dcterms:description "EDAM CSV export" ; schema1:url . kgr:edam.owl a schema1:OntologyProduct ; rdfs:label "EDAM OWL" ; dcterms:description "EDAM OWL release" ; schema1:url . kgr:edam.tsv a schema1:OntologyProduct ; rdfs:label "EDAM TSV" ; dcterms:description "EDAM TSV export" ; schema1:url . kgr:emeraldgraph.graph-json a schema1:GraphProduct ; rdfs:label "EmeraldGraph JSON export" ; dcterms:description "Pre-built EmeraldGraph JSON export containing sustainability-related triples extracted from corporate ESG reports." ; schema1:url . kgr:enrichr-kg.edges-csv a schema1:Product ; rdfs:label "Enrichr-KG Edge CSV Snapshot" ; dcterms:description "Edge-table CSV snapshot from the Enrichr-KG downloads page using source.relation.target edge triples" ; schema1:url . kgr:europepmc.portal a schema1:GraphicalInterface ; rdfs:label "Europe PMC Website" ; dcterms:description "Europe PMC website for searching and reading life sciences literature, including abstracts, full text, preprints, patents and theses, with SciLite text-mined annotations and links to grants, data citations and database records." ; schema1:url . kgr:europepmc.rest-api a schema1:ProgrammingInterface ; rdfs:label "Europe PMC Articles RESTful API" ; dcterms:description "REST API for searching Europe PMC and retrieving article metadata, abstracts, open access full text (XML), references, citations and database cross-references." ; schema1:url . kgr:gendr.data a schema1:Product ; rdfs:label "GenDR Data Download" ; dcterms:description "Downloadable dataset of dietary restriction-related genes" ; schema1:url . kgr:genecards.pathway.data a schema1:Product ; rdfs:label "GeneCards Pathway Data" ; dcterms:description "Pathway information integrated from Reactome, WikiPathways and other pathway databases" ; schema1:url . kgr:genecards.pharmacogenomics a schema1:Product ; rdfs:label "GeneCards Pharmacogenomics Data" ; dcterms:description "Pharmacogenomics data from PharmGKB, DrugBank and other pharmacogenomics sources" ; schema1:url . kgr:genereviews.genes-uniprot a schema1:MappingProduct ; rdfs:label "GeneReviews to Gene Symbol and UniProt Mapping" ; dcterms:description "Tab-delimited mapping of GeneReviews chapters to gene symbols and UniProt accessions, updated weekly." ; schema1:url . kgr:gnbr.graph a schema1:GraphProduct ; rdfs:label "GNBR graph" ; dcterms:description "Text-mined biomedical knowledge graph of gene–disease–drug relationships (semantic themes)" ; schema1:url . kgr:goa.human a schema1:Product ; rdfs:label "Human GOA Annotations" ; dcterms:description "GO annotations for human proteins" ; schema1:url . kgr:goa.mouse a schema1:Product ; rdfs:label "Mouse GOA Annotations" ; dcterms:description "GO annotations for mouse proteins" ; schema1:url . kgr:goa.pdb a schema1:Product ; rdfs:label "PDB GOA Annotations" ; dcterms:description "GO annotations for PDB entries" ; schema1:url . kgr:goa.uniprot a schema1:Product ; rdfs:label "UniProt GOA Annotations" ; dcterms:description "GO annotations for all UniProtKB entries" ; schema1:url . kgr:gtr.xml a schema1:Product ; rdfs:label "GTR Full XML Extraction" ; dcterms:description "Comprehensive XML extraction of all publicly available tests registered in GTR, validated by the GTRPublicData.xsd schema in the documentation directory. A copy is archived at the end of each month in the xml_archive subdirectory." ; schema1:url . kgr:hydrologykg.graph a schema1:GraphProduct ; rdfs:label "SAWGraph Hydrology Knowledge Graph" ; dcterms:description "The SAWGraph Hydrology knowledge graph, describing surface water bodies (lakes, rivers, wetlands), the flowlines that connect them, and groundwater features (aquifers, wells, springs) together with their locations. Surface water bodies and flowlines are modeled from USGS NHDPlus data (NHDWaterbody and NHDFlowline); groundwater features are drawn primarily from individual state geological surveys (for example, the Maine Geological Survey). The RDF (Turtle) graph is served through the SAWGraph Hydrology KG SPARQL and Triple Pattern Fragments endpoints." ; schema1:url . kgr:imodulondb.browser a schema1:GraphicalInterface ; rdfs:label "iModulonDB Web Interface" ; dcterms:description "Interactive web interface for browsing and analyzing iModulons across 15 prokaryotic organisms with 22 datasets, 1924 curated iModulons, and 9576 expression profiles. Includes organism-specific dataset pages, iModulon dashboards, gene search functionality, and project information pages displaying experimental conditions and publication abstracts." ; schema1:url . kgr:jpost.ontology a schema1:OntologyProduct ; rdfs:label "jPOST Ontology" ; dcterms:description "jPOST ontology (Turtle serialization at an .owl URL) defining the classes and properties of the jPOST database RDF, importing SIO and reusing PSI-MS, UniProt core, Unimod and FALDO terms." ; schema1:url . kgr:kg4sl.synlethkg a schema1:GraphProduct ; rdfs:label "SynLethKG Data Files" ; dcterms:description "Data files for SynLethKG, the knowledge graph used by KG4SL and described as constructed from SynLethDB (v1.0/v2.0) and Hetionet." ; schema1:url . kgr:labeledin.indications a schema1:Product ; rdfs:label "LabeledIn Drug Indication Corpus" ; dcterms:description "LabeledIn indication corpus described in the source publication, containing human-reviewed drug-disease treatment relationships with links back to source drug labels." ; schema1:url . kgr:markerdb.chemicals.tsv a schema1:Product ; rdfs:label "MarkerDB Chemical Biomarkers TSV" ; dcterms:description "TSV export of MarkerDB chemical biomarkers with associated conditions and concentration data." ; schema1:url . kgr:medgen.hpo-omim-mapping a schema1:MappingProduct ; rdfs:label "MedGen HPO OMIM Mapping" ; dcterms:description "Combined mappings between MedGen, HPO, and OMIM with gzip compression" ; schema1:url . kgr:medgen.mgsty a schema1:Product ; rdfs:label "MGSTY (Semantic Types)" ; dcterms:description "Rich Release Format (RRF) file containing semantic type assignments with gzip compression" ; schema1:url . kgr:medgen.ordo-history a schema1:Product ; rdfs:label "ORDO CUI History" ; dcterms:description "History file tracking changes to Orphanet term mappings to CUIs" ; schema1:url . kgr:medi.drug_list_flexible a schema1:Product ; rdfs:label "MeDI Flexible Drug List" ; dcterms:description "Flexible drug list CSV from the medic v1.0.1 release" ; schema1:url . kgr:medi.drug_list_stringent a schema1:Product ; rdfs:label "MeDI Stringent Drug List" ; dcterms:description "Stringent drug list CSV from the medic v1.0.1 release" ; schema1:url . kgr:medi.github a schema1:ProcessProduct ; rdfs:label "medic GitHub Repository" ; dcterms:description "Active GitHub repository for MeDI/medic medicines, diseases, indications, and contraindications data and processing code" ; schema1:url . kgr:medi.matrix_indication_list a schema1:Product ; rdfs:label "Matrix Indication List" ; dcterms:description "Matrix indication list spreadsheet from the medic v1.0.1 release" ; schema1:url . kgr:mgmlink.code a schema1:ProcessProduct ; rdfs:label "MGMLink code" ; dcterms:description "Code for generating MGMLink" ; schema1:url . kgr:monarchinitiative a schema1:Aggregator, "Organization" ; rdfs:label "Monarch Initiative" ; dcterms:created "2025-10-30T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The Monarch Initiative is an international consortium that integrates, aligns, and redistributes cross-species gene, genotype, variant, disease, and phenotype data to improve understanding of genetic disease and support translational research." ; dcterms:identifier "monarchinitiative" ; dcterms:isReferencedBy ; dcterms:modified "2026-09-23T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:automat.biolink, kgr:automat.robokopkg, kgr:kg-alzheimers.graph, kgr:monarchinitiative.api, kgr:monarchinitiative.kg, kgr:monarchinitiative.portal, kgr:service-kp.trapi ; schema1:identifier "monarchinitiative" ; schema1:name "Monarch Initiative" ; doap:repository ; skos:altLabel "Monarch", "The Monarch Initiative" ; skos:inScheme "genomics", "model organisms", "organisms" ; adms:status "Active" ; foaf:homepage ; foaf:maker kgr:monarchinitiative . kgr:mousemine.api a schema1:ProgrammingInterface ; rdfs:label "MouseMine API" ; dcterms:description "Programmatic access to MouseMine data via RESTful web services with client libraries for Perl, Python, Ruby, and Java" ; schema1:url . kgr:mousemine.querybuilder a schema1:GraphicalInterface ; rdfs:label "MouseMine QueryBuilder" ; dcterms:description "Custom query construction tool for building complex, iterative queries across multiple data types" ; schema1:url . kgr:mousemine.templates a schema1:GraphicalInterface ; rdfs:label "MouseMine Query Templates" ; dcterms:description "Pre-built query templates for common data retrieval tasks covering genome features, proteins, expression, interactions, phenotypes, diseases, and more" ; schema1:url . kgr:mousemine.web a schema1:GraphicalInterface ; rdfs:label "MouseMine Web Interface" ; dcterms:description "Web-based interface for searching, querying, and analyzing mouse data from MGI through MouseMine" ; schema1:url . kgr:ncbigene.gene_refseq_uniprotkb_collab a schema1:MappingProduct ; rdfs:label "Gene RefSeq UniProtKB Collaboration Data" ; dcterms:description "Gene to RefSeq/UniProtKB collaboration data providing cross-references between gene records and protein databases" ; schema1:url . kgr:ncbigene.mim2gene_medgen a schema1:MappingProduct ; rdfs:label "MIM to Gene MedGen Mapping" ; dcterms:description "MIM to Gene and MedGen mapping data connecting genetic disorders to genes" ; schema1:url . kgr:ncipidkg.graph.ttl a schema1:GraphProduct ; rdfs:label "NCI-PID 2.0 KG RDF graph" ; dcterms:description "RDF graph converting NCI Pathway Interaction Database version 2.0 networks into RDF, enriched with INDRA evidence metadata." ; schema1:url . kgr:nihreporter.clinicalstudies a schema1:Product ; rdfs:label "NIH-Funded Project Clinical Studies" ; dcterms:description "Database of clinical studies linked to NIH-funded research projects" ; schema1:url . kgr:nihreporter.patents a schema1:Product ; rdfs:label "NIH-Funded Project Patents" ; dcterms:description "Database of patents linked to NIH-funded research projects" ; schema1:url . kgr:nikg.graph a schema1:GraphProduct ; rdfs:label "Neighborhood Information KG RDF Graph" ; dcterms:description "The Neighborhood Information KG (NIKG) RDF graph, a knowledge graph warehouse integrating neighborhood-level information such as demographics, land use, local incidents and injuries, and proximity to trauma centers. Built from census data and other neighborhood-level records, the graph is served in RDF (Turtle) through the NIKG SPARQL and Triple Pattern Fragments endpoints hosted on the FRINK / Proto-OKN infrastructure." ; schema1:url . kgr:oard-kg.sparql a schema1:ProgrammingInterface ; rdfs:label "Open Annotations for Rare Diseases (OARD) Knowledge Graph SPARQL" ; dcterms:description "SPARQL endpoint for Open Annotations for Rare Diseases (OARD) Knowledge Graph" ; schema1:url . kgr:oard-kg.tpf a schema1:ProgrammingInterface ; rdfs:label "Open Annotations for Rare Diseases (OARD) Knowledge Graph TPF" ; dcterms:description "Triple Pattern Fragments endpoint for Open Annotations for Rare Diseases (OARD) Knowledge Graph" ; schema1:url . kgr:obo-db-ingest.bigg.compartment.sssom.tsv a schema1:MappingProduct ; rdfs:label "bigg.compartment SSSOM" ; dcterms:description "bigg.compartment SSSOM" ; schema1:url . kgr:ohd-carolina.trapi a schema1:ProgrammingInterface ; rdfs:label "OHD@Carolina Automat TRAPI API" ; dcterms:description "Automat TRAPI endpoint for OHD@Carolina, with query, meta knowledge graph, Cypher and node lookup operations (Biolink 4.2.1)." ; schema1:url . kgr:omnicorp.api a schema1:ProgrammingInterface ; rdfs:label "OmniCorp API" ; dcterms:description "API behavior documented for adding co-occurrence counts and literature co-occurrence edges to TRAPI messages" ; schema1:url . kgr:omnicorp.cooccurrence a schema1:Product ; rdfs:label "OmniCorp Co-occurrence Data" ; dcterms:description "Co-occurrence database generated from public PubMed abstracts with entity normalization for Biolink-relevant biomedical concepts" ; schema1:url . kgr:open-english-wordnet.json-plus a schema1:Product ; rdfs:label "Open English WordNet Plus 2025 JSON" ; dcterms:description "2025+ edition of Open English WordNet, which adds a manually validated selection of proper nouns from Open English Namenet (derived from Wikidata) as a set of JSON files." ; schema1:url . kgr:open-english-wordnet.lmf-plus a schema1:Product ; rdfs:label "Open English WordNet Plus 2025 WN-LMF XML" ; dcterms:description "2025+ edition of Open English WordNet, which adds a manually validated selection of proper nouns from Open English Namenet (derived from Wikidata) in Global WordNet Association WN-LMF XML format." ; schema1:url . kgr:open-english-wordnet.rdf-plus a schema1:GraphProduct ; rdfs:label "Open English WordNet Plus 2025 RDF" ; dcterms:description "2025+ edition of Open English WordNet, which adds a manually validated selection of proper nouns from Open English Namenet (derived from Wikidata) as RDF in Turtle syntax, using the Lemon/OntoLex model." ; schema1:url . kgr:open-english-wordnet.wndb-plus a schema1:Product ; rdfs:label "Open English WordNet Plus 2025 WNDB" ; dcterms:description "2025+ edition of Open English WordNet, which adds a manually validated selection of proper nouns from Open English Namenet (derived from Wikidata) in the legacy Princeton WordNet database (WNDB) text file format, for older applications." ; schema1:url . kgr:open-tggates.histopathology-images a schema1:Product ; rdfs:label "Open TG-GATEs Histopathology Images" ; dcterms:description "BioImage Archive study S-BIAD501 (released 2022), Open TG-GATEs rat liver and kidney histopathology slide images, each linked to its histopathology finding with mapped ontology terms and severity grade as recorded in ChEMBL." ; schema1:url . kgr:organoiddb.all-organoid-samples a schema1:Product ; rdfs:label "OrganoidDB all organoid samples" ; dcterms:description "Sample metadata for every organoid sample in OrganoidDB, with study and sample accessions, tissue, platform, species, PubMed ID and sample characteristics." ; schema1:url . kgr:organoiddb.general-samples a schema1:Product ; rdfs:label "OrganoidDB general samples" ; dcterms:description "Sample metadata for the primary tissue and cell line samples that OrganoidDB uses for comparison with organoids." ; schema1:url . kgr:organoiddb.organoid-specificity-samples a schema1:Product ; rdfs:label "OrganoidDB organoid specificity samples" ; dcterms:description "Sample metadata for the organoid samples used by the OrganoidDB organoid specificity search." ; schema1:url . kgr:phewascat.associations a schema1:Product ; rdfs:label "PheWAS Association Data" ; dcterms:description "PheWAS association results for SNPs from GWAS Catalog analyzed against EMR-derived phenotypes" ; schema1:url . kgr:phosphogrid.portal a schema1:GraphicalInterface ; rdfs:label "PhosphoGRID Web Portal" ; dcterms:description "Legacy PhosphoGRID web portal for searching experimentally verified in vivo yeast phosphorylation sites by ORF, gene name, or external identifier." ; schema1:url . kgr:plant-reactome.mappings a schema1:MappingProduct ; rdfs:label "Plant Reactome Identifier Mappings" ; dcterms:description "Tab-delimited identifier mapping file linking pathway identifiers with associated genes across plant species" ; schema1:url . kgr:preppi.download a schema1:Product ; rdfs:label "PrePPI High-Confidence Interactome" ; dcterms:description "High-confidence PrePPI human interactome dataset generated with structure-informed predictions using AlphaFold-informed models and non-structural evidence" ; schema1:url . kgr:pride-cv.obo a schema1:OntologyProduct ; rdfs:label "pride_cv.obo" ; dcterms:description "PRIDE Controlled Vocabulary in OBO format (about 980 PRIDE terms), the source file that is edited directly in the repository." ; schema1:url . kgr:pride-cv.owl a schema1:OntologyProduct ; rdfs:label "pride_cv.owl" ; dcterms:description "PRIDE Controlled Vocabulary in OWL format, generated from the OBO file with ROBOT; this is the file loaded by the Ontology Lookup Service." ; schema1:url . kgr:prokn.hgncuniprot.gene.is_protein.protein.edges a schema1:GraphProduct ; rdfs:label "ProKN HGNC UniProt Gene-Protein Edges" ; dcterms:description "HGNC to UniProt gene is_protein edges" ; schema1:url . kgr:prokn.pir.impchumangene.orthologous_to.protein.edges a schema1:GraphProduct ; rdfs:label "ProKN PIR Human Gene to Protein Ortholog Edges" ; dcterms:description "PIR IMPC human gene orthologous to protein edges" ; schema1:url . kgr:prokn.pir.impcmousegene.has_gene_product.protein.edges a schema1:GraphProduct ; rdfs:label "ProKN PIR Mouse Gene Product Edges" ; dcterms:description "PIR IMPC mouse gene has gene product protein edges" ; schema1:url . kgr:proton.top a schema1:OntologyProduct ; rdfs:label "PROTON Top Module" ; dcterms:description "PROTON Top module (version 3.0) in Turtle, as mirrored on TriplyDB, with core entity types such as Person, Location and Organization plus temporal, quantitative and abstract concepts." ; schema1:url . kgr:prsatlas.dryad a schema1:Product ; rdfs:label "PRS Atlas Dryad Archive" ; dcterms:description "Dryad archive for PRS Atlas results, including PRS association results at P less than 5e-05 and P less than 5e-08 thresholds" ; schema1:url . kgr:prsatlas.results_5e05 a schema1:Product ; rdfs:label "PRS Atlas Results P less than 5e-05" ; dcterms:description "PRS Atlas results using the P less than 5e-05 polygenic risk score threshold, archived by Dryad" ; schema1:url . kgr:prsatlas.results_5e08 a schema1:Product ; rdfs:label "PRS Atlas Results P less than 5e-08" ; dcterms:description "PRS Atlas results using the P less than 5e-08 polygenic risk score threshold, archived by Dryad" ; schema1:url . kgr:psygenet.genedisease a schema1:Product ; rdfs:label "PsyGeNET Gene-Disease Associations" ; dcterms:description "Gene-disease associations for psychiatric disorders; the PsyGeNET 2.0 homepage reports 3,771 associations between 1,549 genes and 117 psychiatric disease concepts." ; schema1:url . kgr:redu.dashboard a schema1:GraphicalInterface ; rdfs:label "Pan-ReDU Dashboard" ; dcterms:description "Pan-ReDU dashboard and file-selection interface for exploring daily updated public metabolomics metadata and selecting public data for GNPS reanalysis." ; schema1:url . kgr:repodb.full_dataset a schema1:Product ; rdfs:label "RepoDB Full Dataset" ; dcterms:description "Complete RepoDB dataset containing drug repositioning successes and failures, with approved drugs, indications, and clinical trial outcomes. Distributed as full.csv via the figshare deposit \"repoDB (Final Database)\" (DOI 10.6084/m9.figshare.3811674)." ; schema1:url . kgr:reprotox-kg.data a schema1:Product ; rdfs:label "ReproTox-KG Data Assets" ; dcterms:description "Data and content assets published with ReproTox-KG (markdown and supporting materials)." ; schema1:url . kgr:reprotox-kg.portal a schema1:GraphicalInterface ; rdfs:label "ReproTox-KG Explorer" ; dcterms:description "Public web interface for querying and exploring ReproTox-KG relationships." ; schema1:url . kgr:service-kp.portal a schema1:GraphicalInterface ; rdfs:label "Service KP SmartAPI Portal" ; dcterms:description "SmartAPI Translator portal for browsing registered Translator APIs." ; schema1:url . kgr:shepherd.aragorn.api a schema1:ProgrammingInterface ; rdfs:label "Shepherd ARAGORN TRAPI API" ; dcterms:description "TRAPI query endpoint for the ARAGORN ARA implementation within Shepherd (/query and /asyncquery), which answers queries with lookup, Omnicorp literature co-occurrence support and scoring operations over knowledge from Retriever." ; schema1:url . kgr:shepherd.arax.api a schema1:ProgrammingInterface ; rdfs:label "Shepherd ARAX TRAPI API" ; dcterms:description "TRAPI query endpoint for the ARAX ARA implementation within Shepherd (/query and /asyncquery), an in-process port of ARAX's expand, overlay, pathfinding and ranking steps over knowledge from Retriever." ; schema1:url . kgr:shepherd.bte.api a schema1:ProgrammingInterface ; rdfs:label "Shepherd BTE TRAPI API" ; dcterms:description "TRAPI query endpoint for the BioThings Explorer (BTE) ARA implementation within Shepherd (/query and /asyncquery), over knowledge from Retriever." ; schema1:url . kgr:sockg.graph a schema1:GraphProduct ; rdfs:label "SOC-KG RDF Knowledge Graph" ; dcterms:description "The Soil Organic Carbon Knowledge Graph (SOCKG), an RDF knowledge graph integrating and mapping agricultural experimental data (soil properties, greenhouse gas fluxes, crop yields, and management practices) to support soil carbon modeling. Terminology is semantically aligned to the National Agricultural Library Thesaurus." ; schema1:url . kgr:swisslipid.enzymes a schema1:Product ; rdfs:label "SwissLipids Enzymes" ; dcterms:description "TSV export of lipid-related enzymes with UniProt, Rhea, and evidence links." ; schema1:url . kgr:tbkg.data a schema1:GraphProduct ; rdfs:label "TBKG Knowledge Graph Data" ; dcterms:description "Weighted heterogeneous knowledge graph extracted from MEDLINE corpus containing 1,179 tumors, 2,550 biomarkers, 1,806 drugs, and 756 ADRs with 139,254 relationship edges (Tumor-Biomarker, Tumor-Drug, Tumor-ADR, Drug-Biomarker, Drug-ADR, Biomarker-ADR). Includes correlation weights calculated using naive Bayesian model." ; schema1:url . kgr:tbkg.osimertinib_case_study a schema1:Product ; rdfs:label "TBKG Osimertinib ADR Case Study Data" ; dcterms:description "Clinical validation dataset with calculated ADRs for osimertinib ranked by importance, biomarker pathways explaining drug-ADR relationships, and clinical data from 8 lung adenocarcinoma patients. Model achieved Kappa=0.68 concordance with official manual and 0.81 three-fold cross-validation accuracy." ; schema1:url . kgr:tera.cas-to-mesh-csv a schema1:MappingProduct ; rdfs:label "CAS to MeSH Mapping (CSV)" ; dcterms:description "Mapping file linking CAS Registry Numbers to MeSH identifiers" ; schema1:url . kgr:tera.chebi-to-mesh-csv a schema1:MappingProduct ; rdfs:label "ChEBI to MeSH Mapping (CSV)" ; dcterms:description "Mapping file linking ChEBI identifiers to MeSH identifiers" ; schema1:url . kgr:translator.alliance.graph a schema1:GraphProduct ; rdfs:label "Translator Alliance KGX Graph" ; dcterms:description "KGX JSONL graph package for Alliance of Genome Resources distributed via the NCATS Translator release site (release 2026_03_06; build alliance_8.3.0_2023bb02_2025sep1_4.3.6; source version 8.3.0; Biolink 4.3.6; Node Normalizer 2025sep1)." ; schema1:url . kgr:translator.bgee.graph a schema1:GraphProduct ; rdfs:label "Translator Bgee KGX Graph" ; dcterms:description "KGX JSONL graph package for Bgee - Gene Expression Database distributed via the NCATS Translator release site (release 2026_03_06; build bgee_15.2_a4fc19df_2025sep1_4.3.6; source version 15.2; Biolink 4.3.6; Node Normalizer 2025sep1)." ; schema1:url . kgr:translator.bindingdb.graph a schema1:GraphProduct ; rdfs:label "Translator BindingDB KGX Graph" ; dcterms:description "KGX JSONL graph package for BindingDB distributed via the NCATS Translator release site (release 2026_03_06; build bindingdb_202603_2f3418c8_2025sep1_4.3.6; source version 202603; Biolink 4.3.6; Node Normalizer 2025sep1)." ; schema1:url . kgr:translator.chembl.graph a schema1:GraphProduct ; rdfs:label "Translator ChEMBL KGX Graph" ; dcterms:description "KGX JSONL graph package for ChEMBL distributed via the NCATS Translator release site (release 2026_03_06; build chembl_36_76533eea_2025sep1_4.3.6; source version 36; Biolink 4.3.6; Node Normalizer 2025sep1)." ; schema1:url . kgr:translator.cohd.graph a schema1:GraphProduct ; rdfs:label "Translator COHD KGX Graph" ; dcterms:description "KGX JSONL graph package for Columbia Open Health Data (COHD) distributed via the NCATS Translator release site (release 2026_03_12; build cohd_2024-11-25_75f200bb_2025sep1_4.3.6; source version 2024-11-25; Biolink 4.3.6; Node Normalizer 2025sep1)." ; schema1:url . kgr:translator.ctd.graph a schema1:GraphProduct ; rdfs:label "Translator CTD KGX Graph" ; dcterms:description "KGX JSONL graph package for CTD distributed via the NCATS Translator release site (release 2026_03_27; build ctd_February_2026_b588520f_2025sep1_4.3.6; source version February_2026; Biolink 4.3.6; Node Normalizer 2025sep1)." ; schema1:url . kgr:translator.dgidb.graph a schema1:GraphProduct ; rdfs:label "Translator DGIdb KGX Graph" ; dcterms:description "KGX JSONL graph package for DGIdb distributed via the NCATS Translator release site (release 2026_03_06; build dgidb_2024_12_06_755e30d8_2025sep1_4.3.6; source version 2024_12_06; Biolink 4.3.6; Node Normalizer 2025sep1)." ; schema1:url . kgr:translator.diseases.graph a schema1:GraphProduct ; rdfs:label "Translator DISEASES KGX Graph" ; dcterms:description "KGX JSONL graph package for DISEASES distributed via the NCATS Translator release site (release 2026_03_19; build diseases_2026_03_17_d92e2cc6_2025sep1_4.3.6; source version 2026_03_17; Biolink 4.3.6; Node Normalizer 2025sep1)." ; schema1:url . kgr:translator.drug_rep_hub.graph a schema1:GraphProduct ; rdfs:label "Translator Drug Repurposing Hub KGX Graph" ; dcterms:description "KGX JSONL graph package for Drug Repurposing Hub distributed via the NCATS Translator release site (release 2026_03_06; build drug_rep_hub_2025-08-19_99c18ef1_2025sep1_4.3.6; source version 2025-08-19; Biolink 4.3.6; Node Normalizer 2025sep1)." ; schema1:url . kgr:translator.drugcentral.graph a schema1:GraphProduct ; rdfs:label "Translator DrugCentral KGX Graph" ; dcterms:description "KGX JSONL graph package for DrugCentral distributed via the NCATS Translator release site (release 2026_03_19; build drugcentral_2023_11_01_82890f34_2025sep1_4.3.6; source version 2023_11_01; Biolink 4.3.6; Node Normalizer 2025sep1)." ; schema1:url . kgr:translator.gene2phenotype.graph a schema1:GraphProduct ; rdfs:label "Translator Gene2Phenotype KGX Graph" ; dcterms:description "KGX JSONL graph package for Gene2Phenotype distributed via the NCATS Translator release site (release 2026_03_27; build gene2phenotype_2026_03_27_4773272d_2025sep1_4.3.6; source version 2026_03_27; Biolink 4.3.6; Node Normalizer 2025sep1)." ; schema1:url . kgr:translator.go_cam.graph a schema1:GraphProduct ; rdfs:label "Translator GO-CAM KGX Graph" ; dcterms:description "KGX JSONL graph package for GO-CAM distributed via the NCATS Translator release site (release 2026_03_06; build go_cam_2026-01-23_b6972b4a_2025sep1_4.3.6; source version 2026-01-23; Biolink 4.3.6; Node Normalizer 2025sep1)." ; schema1:url . kgr:translator.goa.graph a schema1:GraphProduct ; rdfs:label "Translator GOA KGX Graph" ; dcterms:description "KGX JSONL graph package for GOA distributed via the NCATS Translator release site (release 2026_03_06; build goa_2026-01-23_5fdd3125_2025sep1_4.3.6; source version 2026-01-23; Biolink 4.3.6; Node Normalizer 2025sep1)." ; schema1:url . kgr:translator.gtopdb.graph a schema1:GraphProduct ; rdfs:label "Translator GToPdb KGX Graph" ; dcterms:description "KGX JSONL graph package for GToPdb distributed via the NCATS Translator release site (release 2026_03_19; build gtopdb_2026.1_4d453431_2025sep1_4.3.6; source version 2026.1; Biolink 4.3.6; Node Normalizer 2025sep1)." ; schema1:url . kgr:translator.hpoa.graph a schema1:GraphProduct ; rdfs:label "Translator HPOA KGX Graph" ; dcterms:description "KGX JSONL graph package for HPOA distributed via the NCATS Translator release site (release 2026_03_06; build hpoa_2026-02-16_e80fcfa7_2025sep1_4.3.6; source version 2026-02-16; Biolink 4.3.6; Node Normalizer 2025sep1)." ; schema1:url . kgr:translator.icees.graph a schema1:GraphProduct ; rdfs:label "Translator ICEES KGX Graph" ; dcterms:description "KGX JSONL graph package for ICEES distributed via the NCATS Translator release site (release 2026_03_12; build icees_2024-08-20_3ebb9d85_2025sep1_4.3.6; source version 2024-08-20; Biolink 4.3.6; Node Normalizer 2025sep1)." ; schema1:url . kgr:translator.intact.graph a schema1:GraphProduct ; rdfs:label "Translator IntAct KGX Graph" ; dcterms:description "KGX JSONL graph package for IntAct distributed via the NCATS Translator release site (release 2026_03_06; build intact_2026_01_14_e14f80a8_2025sep1_4.3.6; source version 2026_01_14; Biolink 4.3.6; Node Normalizer 2025sep1)." ; schema1:url . kgr:translator.panther.graph a schema1:GraphProduct ; rdfs:label "Translator PANTHER KGX Graph" ; dcterms:description "KGX JSONL graph package for PANTHER distributed via the NCATS Translator release site (release 2026_03_06; build panther_19.0_0b240030_2025sep1_4.3.6; source version 19.0; Biolink 4.3.6; Node Normalizer 2025sep1)." ; schema1:url . kgr:translator.pathbank.graph a schema1:GraphProduct ; rdfs:label "Translator PathBank KGX Graph" ; dcterms:description "KGX JSONL graph package for Pathbank distributed via the NCATS Translator release site (release 2026_03_27; build pathbank_2019-09-13_4589e2d2_2025sep1_4.3.6; source version 2019-09-13; Biolink 4.3.6; Node Normalizer 2025sep1)." ; schema1:url . kgr:translator.semmeddb.graph a schema1:GraphProduct ; rdfs:label "Translator SemMedDB KGX Graph" ; dcterms:description "KGX JSONL graph package for SemMedDB distributed via the NCATS Translator release site (release 2026_03_27; build semmeddb_semmeddb-2023-kg2.10.3_fe8e6340_2025sep1_4.3.6; source version semmeddb-2023-kg2.10.3; Biolink 4.3.6; Node Normalizer 2025sep1)." ; schema1:url . kgr:translator.sider.graph a schema1:GraphProduct ; rdfs:label "Translator SIDER KGX Graph" ; dcterms:description "KGX JSONL graph package for SIDER distributed via the NCATS Translator release site (release 2026_03_06; build sider_4.1_56b9c307_2025sep1_4.3.6; source version 4.1; Biolink 4.3.6; Node Normalizer 2025sep1)." ; schema1:url . kgr:translator.signor.graph a schema1:GraphProduct ; rdfs:label "Translator SIGNOR KGX Graph" ; dcterms:description "KGX JSONL graph package for SIGNOR distributed via the NCATS Translator release site (release 2026_03_06; build signor_2026_January_e2465db9_2025sep1_4.3.6; source version 2026_January; Biolink 4.3.6; Node Normalizer 2025sep1)." ; schema1:url . kgr:translator.tmkp.graph a schema1:GraphProduct ; rdfs:label "Translator TMKP KGX Graph" ; dcterms:description "KGX JSONL graph package for TMKP distributed via the NCATS Translator release site (release 2026_03_06; build tmkp_tmkp-2023-03-05_6dadae40_2025sep1_4.3.6; source version tmkp-2023-03-05; Biolink 4.3.6; Node Normalizer 2025sep1)." ; schema1:url . kgr:translator.ttd.graph a schema1:GraphProduct ; rdfs:label "Translator TTD KGX Graph" ; dcterms:description "KGX JSONL graph package for TTD distributed via the NCATS Translator release site (release 2026_03_06; build ttd_2024_03_30_0a11135d_2025sep1_4.3.6; source version 2024_03_30; Biolink 4.3.6; Node Normalizer 2025sep1)." ; schema1:url . kgr:translator.ubergraph.graph a schema1:GraphProduct ; rdfs:label "Translator Ubergraph KGX Graph" ; dcterms:description "KGX JSONL graph package for Ubergraph distributed via the NCATS Translator release site (release 2026_03_27; build ubergraph_2026-03-08_0fef3756_2025sep1_4.3.6; source version 2026-03-08; Biolink 4.3.6; Node Normalizer 2025sep1)." ; schema1:url . kgr:ttd.biomarker-disease a schema1:Product ; rdfs:label "Biomarker-Disease Mapping" ; dcterms:description "Biomarker to disease mapping with ICD identifiers" ; schema1:url . kgr:ttd.drug-disease a schema1:Product ; rdfs:label "Drug-Disease Mapping" ; dcterms:description "Drug to disease mapping with ICD identifiers" ; schema1:url . kgr:ttd.target-compound a schema1:Product ; rdfs:label "Target-Compound Activity Data" ; dcterms:description "Target to compound mapping with experimental activity data" ; schema1:url . kgr:ttd.target-disease a schema1:Product ; rdfs:label "Target-Disease Mapping" ; dcterms:description "Target to disease mapping with ICD identifiers" ; schema1:url . kgr:ttd.target-drug a schema1:Product ; rdfs:label "Target-Drug Mapping" ; dcterms:description "Target to drug mapping with mode of action information" ; schema1:url . kgr:ttd.targets-raw a schema1:Product ; rdfs:label "TTD Targets Information" ; dcterms:description "Raw format target information including all TTD target data" ; schema1:url . kgr:ubkg.api a schema1:ProgrammingInterface ; rdfs:label "UBKG API" ; dcterms:description "REST API with endpoints that abstract common types of queries against a UBKG neo4j knowledge graph database. Requires UMLS API key to access." ; schema1:url . kgr:aeolus.standardized_data a schema1:Product ; rdfs:label "AEOLUS Standardized FAERS Data" ; dcterms:description "Standardized and deduplicated version of FDA FAERS data with drug names mapped to RxNorm and adverse event outcomes mapped to SNOMED-CT, including pre-computed summary statistics for drug-outcome relationships." ; schema1:url . kgr:archs4.human.gene_counts a schema1:Product ; rdfs:label "ARCHS4 Human Gene Counts" ; dcterms:description "Latest human gene-level ARCHS4 expression matrix in HDF5 format using Ensembl 107 annotations" ; schema1:url . kgr:archs4.human.transcript_counts a schema1:Product ; rdfs:label "ARCHS4 Human Transcript Counts" ; dcterms:description "Latest human transcript-level ARCHS4 expression matrix in HDF5 format using Ensembl 107 annotations" ; schema1:url . kgr:archs4.mouse.gene_counts a schema1:Product ; rdfs:label "ARCHS4 Mouse Gene Counts" ; dcterms:description "Latest mouse gene-level ARCHS4 expression matrix in HDF5 format using Ensembl 107 annotations" ; schema1:url . kgr:archs4.mouse.transcript_counts a schema1:Product ; rdfs:label "ARCHS4 Mouse Transcript Counts" ; dcterms:description "Latest mouse transcript-level ARCHS4 expression matrix in HDF5 format using Ensembl 107 annotations" ; schema1:url . kgr:archs4.zoo a schema1:Product ; rdfs:label "ARCHS4 Zoo Downloads" ; dcterms:description "Collection page for ARCHS4 Zoo downloads covering selected additional species beyond human and mouse" ; schema1:url . kgr:automat.robokopplus a schema1:GraphProduct ; rdfs:label "robokopplus" ; dcterms:description "Robokop Plus: the ROBOKOP KG extended with CORD-19 and text-mined assertions (2023 data, Biolink 3.1.2; legacy)." ; schema1:url . kgr:biodata-catalyst.picsure a schema1:GraphicalInterface ; rdfs:label "BDC PIC-SURE" ; dcterms:description "BDC PIC-SURE (Patient Information Commons Standard Unification of Research Elements) web interface for searching, filtering and exporting harmonized clinical and genomic variables across hosted studies. Open-access studies (such as 1000 Genomes and BioLINCC training data) need no authorization; authorized access to controlled studies requires an approved dbGaP data access request." ; schema1:url . kgr:cadd.snvs.grch37 a schema1:Product ; rdfs:label "CADD v1.7 Whole-Genome SNV Scores (GRCh37)" ; dcterms:description "CADD v1.7 precomputed raw and PHRED-scaled scores for all possible single nucleotide variants in the GRCh37 human reference genome, tab-separated and bgzip-compressed with a tabix index." ; schema1:url . kgr:cadd.snvs.grch38 a schema1:Product ; rdfs:label "CADD v1.7 Whole-Genome SNV Scores (GRCh38)" ; dcterms:description "CADD v1.7 precomputed raw and PHRED-scaled scores for all possible single nucleotide variants in the GRCh38 human reference genome, tab-separated and bgzip-compressed with a tabix index. A larger version including all annotations is also offered." ; schema1:url . kgr:climatemodelskg.graph a schema1:GraphProduct ; rdfs:label "Climate Models KG Graph" ; dcterms:description "RDF/Turtle knowledge graph integrating climate model and dataset metadata (from ESGF, CMIP controlled vocabularies, and the NASA GCMD keyword taxonomy) with entities and relationships extracted from climate-science publications. Served through the FRINK federation and the SPARQL and TPF endpoints." ; schema1:url . kgr:ctd.anatomy a schema1:Product ; rdfs:label "CTD Anatomy Vocabulary" ; dcterms:description "CTD's anatomy vocabulary, a modified subset of the MeSH Anatomy branch integrated by CTD curators with Uberon and the Cell Ontology, whose terms are cross-referenced as synonyms. Also available as CSV and XML." ; schema1:url . kgr:ctd.chem_gene_ixns a schema1:Product ; rdfs:label "CTD Chemical-Gene Interactions" ; dcterms:description "Curated chemical-gene and chemical-protein interactions with interaction actions, organism, and PubMed evidence. Chemicals use MeSH identifiers, genes use NCBI Gene identifiers, and organisms use NCBI Taxonomy identifiers. Also available as CSV, flat XML, and a structured XML with an XSD." ; schema1:url . kgr:ctd.genes_diseases a schema1:Product ; rdfs:label "CTD Gene-Disease Associations" ; dcterms:description "Gene-disease associations, both curated and inferred through a shared chemical, with an inference score and PubMed evidence. This is the largest CTD file at about 3 GB compressed. Also available as CSV and XML." ; schema1:url . kgr:dailymed.spl_files a schema1:Product ; rdfs:label "DailyMed SPL Data Files" ; dcterms:description "Downloadable SPL files for all drug labels in the DailyMed database, updated daily" ; schema1:url . kgr:depmap.drug_sensitivity a schema1:Product ; rdfs:label "DepMap Drug Sensitivity Data" ; dcterms:description "Drug screening data from various platforms including GDSC, PRISM, and CTD2" ; schema1:url . kgr:dreamkg.graph a schema1:GraphProduct ; rdfs:label "DREAM-KG Knowledge Graph" ; dcterms:description "DREAM-KG homelessness and social-services knowledge graph for the Philadelphia region, integrating social service directory records and provider reviews. Served via the DREAM-KG SPARQL and Triple Pattern Fragments endpoints." ; schema1:url . kgr:dsstoxdb.downloads a schema1:MappingProduct ; rdfs:label "DSSTox Data Downloads" ; dcterms:description "Downloadable Excel and CSV files containing DSSTox identifiers mapped to CAS numbers, InChIKeys, SMILES, molecular formulas, and other chemical identifiers for over 1.2 million substances" ; schema1:url . kgr:ekg.browser a schema1:GraphicalInterface ; rdfs:label "eKG Data Catalogue Page" ; dcterms:description "JRC Data Catalogue dataset landing page for browsing and downloading eKG (the former Virtuoso faceted browser at api-vast.jrc.service.ec.europa.eu/fct/ has been retired)" ; schema1:url . kgr:ekg.rdf a schema1:GraphProduct ; rdfs:label "eKG RDF" ; dcterms:description "RDF/XML serialization of the eKG epidemiological knowledge graph" ; schema1:url . kgr:ekg.sparql a schema1:ProgrammingInterface ; rdfs:label "eKG SPARQL endpoint" ; dcterms:description "SPARQL query interface for eKG via the JRC Data Catalogue YASGUI (the former dedicated endpoint at api-vast.jrc.service.ec.europa.eu/sparql/ has been retired)" ; schema1:url . kgr:ekg.ttl a schema1:GraphProduct ; rdfs:label "eKG TTL" ; dcterms:description "Turtle serialization of the eKG epidemiological knowledge graph" ; schema1:url . kgr:entrez.eutils a schema1:ProgrammingInterface ; rdfs:label "Entrez E-utilities" ; dcterms:description "E-utilities API for programmatic access to Entrez databases" ; schema1:url . kgr:foodkg.build-scripts a schema1:ProcessProduct ; rdfs:label "FoodKG Construction Scripts" ; dcterms:description "Python scripts that build FoodKG from the Recipe1M recipe dataset (layer1.json and det_ingrs.json, acquired manually), USDA nutrient data and FoodOn (downloaded automatically). Outputs are three TriG files, usda-links.trig (about 4.1 million triples), foodon-links.trig (about 30 thousand triples) and foodkg-core.trig (about 63 million triples), intended for loading into Blazegraph." ; schema1:url . kgr:foodkg.sdd-dictionary a schema1:MappingProduct ; rdfs:label "FoodKG USDA Semantic Data Dictionary" ; dcterms:description "Semantic Data Dictionary mapping file specifying how USDA nutrient data columns are linked to external ontologies such as FoodOn and the Units of Measurement Ontology when building FoodKG." ; schema1:url . kgr:foodkg.usda-sample a schema1:GraphProduct ; rdfs:label "FoodKG USDA Mappings Sample" ; dcterms:description "Sample of FoodKG containing the USDA nutrient data mappings, generated with the Semantic Data Dictionary process (usda.rdf, hosted on Google Drive)." ; schema1:url . kgr:gencode.human.gtf a schema1:Product ; rdfs:label "GENCODE Human Annotations GTF" ; dcterms:description "Current comprehensive GENCODE gene annotations for the human GRCh38.p14 genome assembly in GTF format" ; schema1:url . kgr:gencode.mouse.gtf a schema1:Product ; rdfs:label "GENCODE Mouse Annotations GTF" ; dcterms:description "Current comprehensive GENCODE gene annotations for the mouse GRCm39 genome assembly in GTF format" ; schema1:url . kgr:genecards.expression.data a schema1:Product ; rdfs:label "GeneCards Expression Data" ; dcterms:description "Gene expression data aggregated from GTEx, BioGPS, Bgee and other expression databases" ; schema1:url . kgr:genecards.model.organisms a schema1:Product ; rdfs:label "GeneCards Model Organism Data" ; dcterms:description "Model organism data from FlyBase, SGD, ZFIN and other model organism databases" ; schema1:url . kgr:genecards.protein.interactions a schema1:Product ; rdfs:label "GeneCards Protein Interactions" ; dcterms:description "Protein interaction data aggregated from IntAct, STRING, BioGRID and other interaction databases" ; schema1:url . kgr:genecards.variant.data a schema1:Product ; rdfs:label "GeneCards Variant Data" ; dcterms:description "Genetic variant data from ClinVar, dbSNP, GWAS Catalog and other variant databases" ; schema1:url . kgr:goa.mapping-files a schema1:MappingProduct ; rdfs:label "GO Mapping Files" ; dcterms:description "Files containing transitive assignments of InterPro matches, UniProtKB keywords, subcellular locations, EC numbers, or HAMAP matches to manually-selected GO terms" ; schema1:url . kgr:gtrx.data a schema1:Product ; rdfs:label "gTRx Data" ; dcterms:description "BioThings GTRx association collection built from Genome-to-Treatment source records; the 20220802 build reports 695 association records" ; schema1:url . kgr:hrpimp.huri.psi a schema1:Product ; rdfs:label "HuRI PSI-MI Interaction Data" ; dcterms:description "Current HuRI PSI-MI formatted interaction file with detailed experimental information and isoform-specific ORF, transcript, and protein identifiers" ; schema1:url . kgr:imodulondb.datasets a schema1:Product ; rdfs:label "iModulonDB Datasets" ; dcterms:description "Downloadable transcriptomic datasets and iModulon decompositions for 15 organisms including E. coli, B. subtilis, S. aureus, M. tuberculosis, P. aeruginosa, P. putida, and others. Includes gene expression matrices, iModulon activity matrices, gene weights, and metadata for over 9500 expression profiles from 525 studies." ; schema1:url . kgr:jpost.rdf a schema1:Product ; rdfs:label "jPOSTdb RDF Files" ; dcterms:description "Per-dataset Turtle files of the jPOST database RDF on the NBDC LSDB Archive, one directory per JPST dataset." ; schema1:url . kgr:kinace.interactions a schema1:GraphProduct ; rdfs:label "KiNet Full Interaction Dataset" ; dcterms:description "CSV download of the full KiNet human kinase-substrate interaction dataset with source database, evidence, and PMID reference fields" ; schema1:url . kgr:mangal.api a schema1:ProgrammingInterface ; rdfs:label "mangal.io API" ; dcterms:description "RESTful API for programmatic access to network data and metadata" ; schema1:url . kgr:mangal.docs a schema1:DocumentationProduct ; rdfs:label "mangal.io Documentation" ; dcterms:description "API documentation, user guides, and data model specification" ; schema1:url . kgr:mangal.portal a schema1:GraphicalInterface ; rdfs:label "mangal.io Web Portal" ; dcterms:description "Web interface for browsing, querying, and visualizing ecological networks" ; schema1:url . kgr:mangal.rmangal a schema1:ProcessProduct ; rdfs:label "rmangal R Client" ; dcterms:description "R package for retrieving and exploring data from the Mangal ecological interactions database" ; schema1:url . kgr:markerdb.sequence_variants.tsv a schema1:Product ; rdfs:label "MarkerDB Genetic Biomarkers TSV" ; dcterms:description "TSV export of MarkerDB genetic biomarkers with associated conditions." ; schema1:url . kgr:med-rt.core_spl a schema1:Product ; rdfs:label "Core MED-RT SPL Archive" ; dcterms:description "Structured Product Labeling subset archive from the current MED-RT distribution." ; schema1:url . kgr:mediadive.portal a schema1:GraphicalInterface ; rdfs:label "MediaDive Web Portal" ; dcterms:description "MediaDive web portal for browsing, searching, comparing, and building microbial cultivation media recipes." ; schema1:url . kgr:mediadive.rest_api a schema1:ProgrammingInterface ; rdfs:label "MediaDive REST API" ; dcterms:description "MediaDive REST API documentation for programmatic retrieval of media, solutions, ingredients, strains, and related records." ; schema1:url . kgr:mediadive.sparql a schema1:ProgrammingInterface ; rdfs:label "MediaDive SPARQL Endpoint" ; dcterms:description "MediaDive SPARQL endpoint for querying the DSMZ Digital Diversity RDF representation of MediaDive data." ; schema1:url . kgr:metabokg.rml_mappings a schema1:MappingProduct ; rdfs:label "MetaBoKG RML Mappings" ; dcterms:description "RML mappings and configuration templates used to transform GNPS, molecular networking, feature-based molecular networking, and ReDU data into RDF." ; schema1:url . kgr:metatraits.gtdb2ncbi a schema1:Product ; rdfs:label "GTDB to NCBI Taxonomy Mapping" ; dcterms:description "Taxonomy crosswalk from GTDB release r220 to NCBI taxonomy (2025-07-28), with lineage context, genome counts, and majority-vote agreement fractions." ; schema1:url . kgr:metatraits.ncbi2gtdb a schema1:Product ; rdfs:label "NCBI to GTDB Taxonomy Mapping" ; dcterms:description "Taxonomy crosswalk from NCBI taxonomy (2025-07-28) to GTDB release r220, with lineage context, genome counts, and majority-vote agreement fractions." ; schema1:url . kgr:mint.mitab.all a schema1:Product ; rdfs:label "MINT MITAB Full Dataset" ; dcterms:description "Complete MINT dataset in PSI-MI MITAB 2.7 format accessible via PSICQUIC web service." ; schema1:url . kgr:mint.mitab.drosophila a schema1:Product ; rdfs:label "MINT Drosophila Interactions" ; dcterms:description "Drosophila melanogaster protein interactions from MINT in PSI-MI MITAB format." ; schema1:url . kgr:mint.mitab.human a schema1:Product ; rdfs:label "MINT Human Interactions" ; dcterms:description "Human protein interactions from MINT in PSI-MI MITAB format for Homo sapiens (NCBITaxon 9606)." ; schema1:url . kgr:mint.mitab.mouse a schema1:Product ; rdfs:label "MINT Mouse Interactions" ; dcterms:description "Mouse protein interactions from MINT in PSI-MI MITAB format for Mus musculus (NCBITaxon 10090)." ; schema1:url . kgr:mint.mitab.yeast a schema1:Product ; rdfs:label "MINT Yeast Interactions" ; dcterms:description "Saccharomyces cerevisiae protein interactions from MINT in PSI-MI MITAB format." ; schema1:url . kgr:mint.psicquic a schema1:ProgrammingInterface ; rdfs:label "MINT PSICQUIC Web Service" ; dcterms:description "PSICQUIC SOAP and REST web services for programmatic access to MINT data using Molecular Interactions Query Language (MIQL)." ; schema1:url . kgr:mondo.sssom a schema1:MappingProduct ; rdfs:label "MONDO SSSOM" ; dcterms:description "MONDO SSSOM. Mappings from MONDO identifiers to other namespaces." ; schema1:url . kgr:myaura.graph a schema1:GraphProduct ; rdfs:label "myAURA epilepsy knowledge graph" ; dcterms:description "Multilayer epilepsy knowledge graph generated by the myAURA data processing workflow from biomedical, clinical, literature, and patient-centered data sources." ; schema1:url . kgr:nihreporter.linktables a schema1:Product ; rdfs:label "NIH-Funded Publications Link Tables" ; dcterms:description "Database of publication link tables for NIH-funded research projects" ; schema1:url . kgr:nihreporter.publications a schema1:Product ; rdfs:label "NIH-Funded Publications Database" ; dcterms:description "Database of publications linked to NIH-funded research projects" ; schema1:url . kgr:omim.mim2gene a schema1:MappingProduct ; rdfs:label "OMIM mim2gene.txt" ; dcterms:description "Public mapping of MIM numbers to NCBI Gene IDs, Ensembl Gene IDs, and HGNC symbols" ; schema1:url . kgr:pathwhiz.pathways a schema1:GraphicalInterface ; rdfs:label "PathWhiz Pathway Library" ; dcterms:description "Public library of pathway diagrams that can be browsed, viewed, and used as templates for creating new pathways" ; schema1:url . kgr:pharmacodb.api a schema1:ProgrammingInterface ; rdfs:label "PharmacoDB API" ; dcterms:description "GraphQL API providing programmatic access to cell lines, compounds, tissues, datasets, experiments, and intersections data" ; schema1:url . kgr:pharmacodb.documentation a schema1:DocumentationProduct ; rdfs:label "PharmacoDB Documentation" ; dcterms:description "Comprehensive user documentation covering search functionality, datasets, tissues, cell lines, experiments, genes, compounds, and biomarker discovery features" ; schema1:url . kgr:pharmacodb.portal a schema1:GraphicalInterface ; rdfs:label "PharmacoDB Web Application" ; dcterms:description "Primary web portal for searching and browsing cancer pharmacogenomics data across multiple integrated datasets with interactive dose-response curve visualization" ; schema1:url . kgr:phosphoelm.dataset a schema1:Product ; rdfs:label "Phospho.ELM Dataset" ; dcterms:description "Phospho.ELM version 9.0 dataset request page for phosphorylation instances with accessions, sequences, residue positions, phosphorylated residues, PubMed identifiers, upstream kinases, evidence source class, species, and entry dates." ; schema1:url . kgr:predict.method a schema1:ProcessProduct ; rdfs:label "PREDICT Drug-Indication Inference Method" ; dcterms:description "PREDICT computational method for large-scale prediction of drug indications using drug-drug and disease-disease similarity measures and known drug-disease associations." ; schema1:url . kgr:predict.supporting-information a schema1:Product ; rdfs:label "PREDICT Supporting Information" ; dcterms:description "Supporting information for the PREDICT study, including supplementary tables and data supporting the drug-disease association gold standard and prediction analyses." ; schema1:url . kgr:ptmd.total_pda a schema1:Product ; rdfs:label "PTMD Total PTM-Disease Associations" ; dcterms:description "Complete PTMD 2.0 PTM-disease association download in tab-delimited format" ; schema1:url . kgr:sniff.atlas-vcf a schema1:Product ; rdfs:label "Sniff Atlas sites VCF (v1.0.1)" ; dcterms:description "A sites-only VCF of the Sniff Atlas variant catalogue, containing allele frequencies for 9,667,790 imputed variants across 14,478 dogs and 188 breeds on the CanFam4 assembly, restricted to variants with allele frequency at or above 1%." ; schema1:url . kgr:spatialkg.graph a schema1:GraphProduct ; rdfs:label "SAWGraph Spatial KG Graph" ; dcterms:description "The SAWGraph Spatial KG as an RDF (Turtle) graph. It contains all Level 13 grid cells from the S2 grid together with administrative regions of levels 1 to 3 (states, counties, and county subdivisions) and the spatial relationships between them for the 48 contiguous U.S. states. S2 grid cells and state/county geometries are taken from KnowWhereGraph, and county subdivisions are sourced from the US Census Bureau. The graph is served through the SAWGraph Spatial KG SPARQL and Triple Pattern Fragments endpoints." ; schema1:url . kgr:translator.dakp.graph a schema1:GraphProduct ; rdfs:label "Translator DAKP KGX Graph" ; dcterms:description "KGX JSONL graph package for Drug Approvals KP distributed via the NCATS Translator release site (release 2026_03_19; build dakp_0.5.3_c3f74ab4_2025sep1_4.3.6; source version 0.5.3; Biolink 4.3.6; Node Normalizer 2025sep1)." ; schema1:url . kgr:uf-okn.graph a schema1:GraphProduct ; rdfs:label "UF-OKN Knowledge Graph" ; dcterms:description "The UF-OKN knowledge graph, published as Linked Data (RDF/Turtle), that links urban infrastructure features to hydrologic forecasts so that flood risk can be explored as connected data. It relates OpenStreetMap building footprints and road networks to their nearest river (via the NHD/NHDPlus reach network) and to the streamflow forecasts from the NOAA National Water Model that would inundate them." ; schema1:url . kgr:unibiomap.compound_desc a schema1:GraphProduct ; rdfs:label "UniBioMap Compound Descriptions" ; dcterms:description "UniBioMap compound entity descriptions." ; schema1:url . kgr:unibiomap.pathway_desc a schema1:GraphProduct ; rdfs:label "UniBioMap Pathway Descriptions" ; dcterms:description "UniBioMap pathway entity descriptions." ; schema1:url . kgr:who-ictrp.portal a schema1:GraphicalInterface ; rdfs:label "ICTRP Search Portal" ; dcterms:description "ICTRP Search Portal for searching trial registration records from all ICTRP data providers, with basic and advanced search, filters for phase, results, children, COVID-19, rare diseases and genome editing, browsing by health topic and country, and links to the original registry records." ; schema1:url . kgr:who-ictrp.search-export a schema1:Product ; rdfs:label "ICTRP Search Results Export" ; dcterms:description "Export of ICTRP search results (selected records or all records of a search) from the Search Portal in XML or CSV format, free of charge under the WHO ICTRP data terms and conditions." ; schema1:url . kgr:who-ictrp.web-service a schema1:ProgrammingInterface ; rdfs:label "ICTRP Search Portal Web Service" ; dcterms:description "ICTRP Search Portal Web Service, a SOAP/XML web service (operations include GetTrials and GetTrialDetails) for querying the ICTRP database in real time. Access is granted to agreed partners for research purposes, and WHO may charge to recoup costs." ; schema1:url . kgr:activedriverdb.downloads a schema1:Product ; rdfs:label "ActiveDriverDB Downloads" ; dcterms:description "Bulk downloadable ActiveDriverDB datasets, including cancer, disease, and population mutations affecting PTM sites and kinase-target site-specific networks." ; schema1:url . kgr:biomuta.dataset a schema1:Product ; rdfs:label "BioMuta Cancer Mutation Dataset" ; dcterms:description "Unified BioMuta cancer mutation dataset produced by combining mutation records from TCGA, ICGC, CIViC, and COSMIC into a common field structure." ; schema1:url . kgr:cacao.api a schema1:ProgrammingInterface ; rdfs:label "GONUTS MediaWiki API" ; dcterms:description "MediaWiki API endpoint for accessing CACAO and related GO Wiki content programmatically." ; schema1:url . kgr:cacao.go-annotations a schema1:Product ; rdfs:label "CACAO GO Annotations" ; dcterms:description "GO annotations contributed by CACAO curators and distributed through the Gene Ontology and GOA (assigned_by CACAO); browsable in QuickGO." ; schema1:url . kgr:cacao.gowiki a schema1:GraphicalInterface ; rdfs:label "CACAO GO Wiki Page" ; dcterms:description "Archived GONUTS wiki category for the original CACAO competitions (2010-2020)." ; schema1:url . kgr:cacao.portal a schema1:GraphicalInterface ; rdfs:label "CACAO Platform" ; dcterms:description "CACAO annotation competition platform (relaunched 2024), where students create and review GO annotations." ; schema1:url . kgr:cm4ai_talent_kg.graph a schema1:GraphProduct ; rdfs:label "CM4AI Talent Knowledge Graph" ; dcterms:description "The CM4AI Talent Knowledge Graph connecting Bridge2AI and CM4AI researchers, projects, publications, datasets, and bio-entities." ; schema1:url . kgr:disprot.downloads a schema1:Product ; rdfs:label "DisProt Downloads" ; dcterms:description "Bulk download of DisProt data in multiple formats including JSON, TSV, FASTA, and GAF" ; schema1:url . kgr:drug-approvals-kp.graph.edges a schema1:GraphProduct ; rdfs:label "Drug Approvals KP Graph Edges" ; dcterms:description "Edges for the Drug Approvals KP, v0.3.9" ; schema1:url . kgr:drug-approvals-kp.graph.nodes a schema1:GraphProduct ; rdfs:label "Drug Approvals KP Graph Nodes" ; dcterms:description "Nodes for the Drug Approvals KP, v0.3.9" ; schema1:url . kgr:emikg.kg a schema1:GraphProduct ; rdfs:label "EMI Knowledge Graph" ; dcterms:description "Graph version of the Earth Metabolome Initiative Ontology" ; schema1:url . kgr:emikg.sparql a schema1:ProgrammingInterface ; rdfs:label "EMI KG SPARQL Endpoint" ; dcterms:description "SPARQL endpoint for programmatic access to the EMI Knowledge Graph" ; schema1:url . kgr:emikg.web a schema1:GraphicalInterface ; rdfs:label "EMI KG SPARQL Query Editor" ; dcterms:description "Web-based SPARQL query editor for the EMI Knowledge Graph" ; schema1:url . kgr:epsd.download a schema1:Product ; rdfs:label "EPSD Data Download" ; dcterms:description "Download page for complete phosphorylation site datasets and annotation data from EPSD 2.0" ; schema1:url . kgr:fiokg.graph a schema1:GraphProduct ; rdfs:label "SAWGraph FRS Knowledge Graph" ; dcterms:description "The SAWGraph Facilities and Industries Ontology (FIO) / Facility Registry Service (FRS) knowledge graph, an RDF (Turtle) graph representing US facilities from EPA's Facility Registry Service together with their NAICS and SIC industry classifications and spatial locations. It is served through the SAWGraph FRS SPARQL and Triple Pattern Fragments endpoints." ; schema1:url . kgr:forum.api a schema1:ProgrammingInterface ; rdfs:label "FORUM API" ; dcterms:description "FORUM REST API for programmatic access to chemical-disease associations" ; schema1:url . kgr:forum.void a schema1:DocumentationProduct ; rdfs:label "FORUM VoID Metadata" ; dcterms:description "FORUM VoID (Vocabulary of Interlinked Datasets) metadata describing the knowledge graph structure" ; schema1:url . kgr:forum.webapp a schema1:GraphicalInterface ; rdfs:label "FORUM Web Application" ; dcterms:description "FORUM web application interface for semantic metabolomics exploration" ; schema1:url . kgr:genetics-kp.graph a schema1:GraphProduct ; rdfs:label "Genetics KP Knowledge Graph" ; dcterms:description "TRAPI knowledge graph served by the Genetics KP, exposing gene/disease and gene/phenotype associations computed from large-scale human genetics data (e.g. Genebass exome association statistics aggregated with methods such as MAGMA and the HuGE calculator) and integrated curated gene-condition resources. The linked endpoint returns the meta knowledge graph describing the served node and edge types." ; schema1:url . kgr:geoconnex.graph a schema1:GraphProduct ; rdfs:label "GEOCONNEX Knowledge Graph" ; dcterms:description "The Geoconnex knowledge graph, an open community-contributed RDF graph linking U.S. hydrologic features via persistent identifiers. It integrates USGS reference features (NHDPlus High Resolution hydrologic units, Watershed Boundary Dataset subwatersheds, reference stream gages, and national aquifers) with community-contributed feature registries, and is served through the Geoconnex SPARQL and Triple Pattern Fragments endpoints." ; schema1:url . kgr:glycocoo.rdf-samples a schema1:Product ; rdfs:label "GlycoCoO RDF Sample Data" ; dcterms:description "Sample RDF data files demonstrating GlycoCoO usage with examples from UniCarbKB, GlyConnect, and GlycoNAVI" ; schema1:url . kgr:goa.ftp a schema1:Product ; rdfs:label "GOA FTP Site" ; dcterms:description "FTP site containing current and archived GOA annotation files for all species" ; schema1:url . kgr:gpcrdb.api a schema1:ProgrammingInterface ; rdfs:label "GPCRdb REST API" ; dcterms:description "REST API returning JSON for most GPCRdb data, including proteins, families, alignments, residues, structures, ligands, mutations and signaling proteins." ; schema1:url . kgr:gpcrdb.portal a schema1:GraphicalInterface ; rdfs:label "GPCRdb Web Portal" ; dcterms:description "GPCRdb web portal for browsing and analyzing GPCR receptors, sequence alignments, structures and structure models, ligands and bioactivities, mutations, drugs and signaling proteins, with interactive diagrams such as snake plots and phylogenetic trees." ; schema1:url . kgr:gtr.test_condition_gene a schema1:Product ; rdfs:label "GTR Test, Condition and Gene Table" ; dcterms:description "Tab-delimited listing of every registered test and the conditions and genes it targets, updated daily. Conditions carry MedGen concept IDs, OMIM numbers and SNOMED CT IDs where available; genes carry NCBI Gene IDs and symbols." ; schema1:url . kgr:hpidb.mitab a schema1:Product ; rdfs:label "HPIDB PSI-MITAB Dataset" ; dcterms:description "Downloadable HPIDB host-pathogen interaction dataset in PSI-MITAB format." ; schema1:url . kgr:hra.knowledge-graph a schema1:GraphProduct ; rdfs:label "Human Reference Atlas Knowledge Graph" ; dcterms:description "HRA Knowledge Graph documentation and access information for querying the semantically rich graph that connects anatomical structures, cell types, biomarkers, spatial data, and HRA applications" ; schema1:url . kgr:hrpimp.data a schema1:Product ; rdfs:label "HuRI Protein-Protein Interaction Data" ; dcterms:description "Current HuRI TSV file containing 52,569 systematically mapped binary human protein-protein interactions, provided as interacting Ensembl gene ID pairs" ; schema1:url . kgr:intact.api a schema1:ProgrammingInterface ; rdfs:label "IntAct Web Service" ; dcterms:description "IntAct web service and URL-based programmatic interface for retrieving molecular interaction networks in PSI-MI formats." ; schema1:url . kgr:intact.datasets a schema1:Product ; rdfs:label "IntAct Datasets" ; dcterms:description "Curated and computational datasets (disease-, method-, and species-specific) with per-dataset downloads" ; schema1:url . kgr:intact.ftp.psi25 a schema1:Product ; rdfs:label "IntAct PSI-MI XML 2.5" ; dcterms:description "IntAct data in PSI-MI XML 2.5 format (directory)" ; schema1:url . kgr:intact.ftp.psi30 a schema1:Product ; rdfs:label "IntAct PSI-MI XML 3.0" ; dcterms:description "IntAct data in PSI-MI XML 3.0 format (directory)" ; schema1:url . kgr:intact.ftp.psimitab a schema1:Product ; rdfs:label "IntAct PSI-MI MITAB 2.7" ; dcterms:description "IntAct data in PSI-MI MITAB format (directory)" ; schema1:url . kgr:intact.ftp.psimitab.all a schema1:Product ; rdfs:label "IntAct MITAB Archive" ; dcterms:description "Entire MITAB export of the database as a single archive (intact.zip)" ; schema1:url . kgr:kg-ebi-gene2pheno.edges.kgx a schema1:GraphProduct ; rdfs:label "EBI gene2pheno KGX edges" ; dcterms:description "KGX edges file for EBI Gene2Phenotype KG" ; schema1:url . kgr:kg-ebi-gene2pheno.edges.trapi a schema1:GraphProduct ; rdfs:label "EBI gene2pheno TRAPI edges" ; dcterms:description "TRAPI edges file for EBI Gene2Phenotype KG" ; schema1:url . kgr:kg-ebi-gene2pheno.nodes.kgx a schema1:GraphProduct ; rdfs:label "EBI gene2pheno KGX nodes" ; dcterms:description "KGX nodes file for EBI Gene2Phenotype KG" ; schema1:url . kgr:metatraits.traits a schema1:Product ; rdfs:label "metaTraits Trait List" ; dcterms:description "Trait data table listing all 140+ harmonized traits available in metaTraits, mapped to standardized ontologies." ; schema1:url . kgr:mind.entities a schema1:Product ; rdfs:label "MIND Entities Dictionary" ; dcterms:description "Dictionary of entities in the MIND knowledge graph" ; schema1:url . kgr:mind.relations a schema1:Product ; rdfs:label "MIND Relations Dictionary" ; dcterms:description "Dictionary of relations in the MIND knowledge graph" ; schema1:url . kgr:mind.test a schema1:GraphProduct ; rdfs:label "MIND Test Data" ; dcterms:description "Test data for the MIND knowledge graph containing DrugCentral indications" ; schema1:url . kgr:mind.train a schema1:GraphProduct ; rdfs:label "MIND Training Data" ; dcterms:description "Training data for the MIND knowledge graph containing 9,651,040 edges" ; schema1:url . kgr:mind.valid a schema1:GraphProduct ; rdfs:label "MIND Validation Data" ; dcterms:description "Validation data for the MIND knowledge graph containing DrugCentral indications" ; schema1:url . kgr:openbiodiv.ontology.ttl a schema1:OntologyProduct ; rdfs:label "OpenBioDiv-O" ; dcterms:description "OpenBioDiv-O, the OpenBiodiv Ontology" ; schema1:url . kgr:orphanet.scientific_knowledge_files a schema1:Product ; rdfs:label "Orphanet Scientific Knowledge Files" ; dcterms:description "Orphanet scientific knowledge files for rare disease alignments, classifications, genes, phenotypes, functional consequences, epidemiology, and natural history" ; schema1:url . kgr:proton.ontology a schema1:DocumentationProduct ; rdfs:label "PROTON 3.0 Beta Specification" ; dcterms:description "PDF specification of PROTON 3.0 Beta, describing the System, Top, Extent and Knowledge Management modules and their classes and properties." ; schema1:url . kgr:rampdb.database a schema1:Product ; rdfs:label "RaMP-DB Integrated Database" ; dcterms:description "Multi-sourced relational database integrating metabolomic pathway information, biochemical reactions, ontologies, and chemical descriptors for genes, proteins, and metabolites with query and enrichment analysis capabilities." ; schema1:url . kgr:rdbridge.graph a schema1:GraphProduct ; rdfs:label "RDBridge Knowledge Graph" ; dcterms:description "Knowledge graph connecting rare diseases with genes, drugs, pathways, and medical images" . kgr:rdf-portal.graphql a schema1:ProgrammingInterface ; rdfs:label "RDF Portal GraphQL API" ; dcterms:description "GraphQL API powered by Grasp, a GraphQL-to-SPARQL bridge developed by DBCLS, with a GraphiQL interface in the browser. When checked it covered UniProt, ChEBI, ChEMBL and MedGen." ; schema1:url . kgr:rdkg.tpf a schema1:ProgrammingInterface ; rdfs:label "RDKG TPF" ; dcterms:description "Triple Pattern Fragments endpoint for RDKG" ; schema1:url . kgr:redrugs.source a schema1:Product ; rdfs:label "ReDrugs Source Code" ; dcterms:description "ReDrugS source code (TurboGears/SADI web application and probabilistic nanopublication pipeline). The hosted service it ran (redrugs.tw.rpi.edu) is no longer available." ; schema1:url . kgr:sniff.federation-edges a schema1:GraphProduct ; rdfs:label "Sniff KGX federation export, edges" ; dcterms:description "A Biolink-conformant KGX TSV edge file for the Sniff cross-species substrate, covering dog-to-human orthology and canine disease associations. Every edge carries provenance and an evidence level, and all edges with a knowledge level of prediction are excluded." ; schema1:url . kgr:sugi-atlas.portal a schema1:GraphicalInterface ; rdfs:label "Sugi Atlas Web Site" ; dcterms:description "Sugi Atlas web site with search and one static reference page per human gene, drug and disease (for example /atlas/gene/TP53/). Each page also has a Markdown version at index.md and embeds a schema.org JSON-LD record." ; schema1:url . kgr:suppkg.source-data a schema1:ProcessProduct ; rdfs:label "SuppKG Source Data Repository" ; dcterms:description "Source data directory used for SuppKG in the SemRep_DS repository." ; schema1:url . kgr:translator.ctkp.graph a schema1:GraphProduct ; rdfs:label "Translator CTKP KGX Graph" ; dcterms:description "KGX JSONL graph package for CTKP distributed via the NCATS Translator release site (release 2026_03_27; build ctkp_3.1.37_a99268cc_2025sep1_4.3.6; source version 3.1.37; Biolink 4.3.6; Node Normalizer 2025sep1)." ; schema1:url . kgr:unibiomap.disease_desc a schema1:GraphProduct ; rdfs:label "UniBioMap Disease Descriptions" ; dcterms:description "UniBioMap disease entity descriptions." ; schema1:url . kgr:acukg.csv a schema1:GraphProduct ; rdfs:label "AcuKG CSV tables" ; dcterms:description "Source CSV tables for AcuKG, including acupoint therapeutic actions, indications, anatomy relationships, clinical trial links, and PubMed links." ; schema1:url . kgr:acukg.json a schema1:GraphProduct ; rdfs:label "AcuKG JSON files" ; dcterms:description "JSON representation of AcuKG relationship tables." ; schema1:url . kgr:acukg.rdf a schema1:GraphProduct ; rdfs:label "AcuKG RDF Turtle files" ; dcterms:description "RDF Turtle representation of AcuKG relationship tables." ; schema1:url . kgr:biogrid.identifiers a schema1:MappingProduct ; rdfs:label "BIOGRID-IDENTIFIERS-LATEST.tab.zip" ; dcterms:description "A single delimited text file format containing a list of mappings between different identifiers stored in BioGRID and the identifiers used in downloads." ; schema1:url . kgr:cellmodelpassports.gene_identifiers a schema1:MappingProduct ; rdfs:label "Cell Model Passports Gene Identifiers" ; dcterms:description "Gene identifier table mapping Cell Model Passports gene IDs to HGNC, Ensembl, Entrez Gene, RefSeq, CCDS, COSMIC and UniProt identifiers." ; schema1:url . kgr:cellmodelpassports.model_list a schema1:MappingProduct ; rdfs:label "Cell Model Passports Model List" ; dcterms:description "Annotated list of all cell line and organoid models with tissue, cancer type (NCIt), clinical and patient annotation, and cross-references to Cellosaurus RRIDs, COSMIC IDs, DepMap (Broad) IDs and CCLE names." ; schema1:url . kgr:genecards.disease.associations a schema1:Product ; rdfs:label "GeneCards Disease Associations" ; dcterms:description "Disease association data integrated from OMIM, MalaCards, ClinVar, Orphanet, DisGeNET and other disease databases" ; schema1:url . kgr:gpcrdb.data a schema1:Product ; rdfs:label "GPCRdb Reference Data Repository" ; dcterms:description "GitHub repository collecting the reference data used to build GPCRdb, including protein, structure, ligand, mutant, drug, G protein, arrestin and residue data files, plus a PDSP Ki data backup." ; schema1:url . kgr:kg-enp.graph a schema1:GraphProduct ; rdfs:label "ENPKG RDF Knowledge Graph" ; dcterms:description "RDF knowledge graph of the Experimental Natural Products Knowledge Graph, integrating experimental LC-MS/MS spectra and GNPS-based annotations, ISDB-LOTUS structural annotations, taxonomic and bioactivity metadata, cross-linked to Wikidata and served from the public GraphDB/SPARQL endpoint." ; schema1:url . kgr:metatraits.gtdb.family-summary a schema1:Product ; rdfs:label "metaTraits GTDB Family Summary" ; dcterms:description "Family-level harmonized trait annotations aggregated for GTDB taxonomy in compressed TSV format." ; schema1:url . kgr:metatraits.gtdb.genus-summary a schema1:Product ; rdfs:label "metaTraits GTDB Genus Summary" ; dcterms:description "Genus-level harmonized trait annotations aggregated for GTDB taxonomy in compressed TSV format." ; schema1:url . kgr:metatraits.gtdb.species-summary a schema1:Product ; rdfs:label "metaTraits GTDB Species Summary" ; dcterms:description "Species-level harmonized trait annotations aggregated for GTDB taxonomy in compressed TSV format." ; schema1:url . kgr:metatraits.ncbi.family-summary a schema1:Product ; rdfs:label "metaTraits NCBI Family Summary" ; dcterms:description "Family-level harmonized trait annotations aggregated for NCBI taxonomy in compressed TSV format." ; schema1:url . kgr:metatraits.ncbi.genus-summary a schema1:Product ; rdfs:label "metaTraits NCBI Genus Summary" ; dcterms:description "Genus-level harmonized trait annotations aggregated for NCBI taxonomy in compressed TSV format." ; schema1:url . kgr:metatraits.ncbi.species-summary a schema1:Product ; rdfs:label "metaTraits NCBI Species Summary" ; dcterms:description "Species-level harmonized trait annotations aggregated for NCBI taxonomy in compressed TSV format." ; schema1:url . kgr:mydisease.api a schema1:ProgrammingInterface ; rdfs:label "MyDisease.info API" ; dcterms:description "MyDisease.info REST API (v1) for querying disease annotation records by keyword, field or identifier (Mondo, DOID, OMIM, Orphanet, MeSH and UMLS IDs), with batch queries over POST. Data in each record keep the license of their original source." ; schema1:url . kgr:obo-db-ingest.bigg.metabolite.sssom.tsv a schema1:MappingProduct ; rdfs:label "bigg.metabolite SSSOM" ; dcterms:description "bigg.metabolite SSSOM" ; schema1:url . kgr:openfda.apis a schema1:ProgrammingInterface ; rdfs:label "openFDA APIs" ; dcterms:description "JSON REST APIs (Elasticsearch query syntax) for FDA drug, device, food, animal and veterinary, cosmetic, tobacco and other datasets, including drug adverse events (FAERS), device adverse events (MAUDE), the National Drug Code directory, the Orange Book, UNII substance data, labeling, recalls and enforcement reports." ; schema1:url . kgr:openfda.downloads a schema1:Product ; rdfs:label "openFDA Bulk Downloads" ; dcterms:description "Bulk downloads of every openFDA endpoint as zipped JSON files, split into partitions for large datasets such as drug adverse events (FAERS) and device adverse events (MAUDE), with a machine-readable manifest at https://api.fda.gov/download.json listing each endpoint's export date and file partitions." ; schema1:url . kgr:pankgraph.graph a schema1:GraphProduct ; rdfs:label "PanKgraph Knowledge Graph" ; dcterms:description "Pancreas-focused knowledge graph integrating genes, SNPs, pancreatic expression QTLs, and donor-derived islet datasets harmonized within PanKbase." ; schema1:url . kgr:proteomehd.data a schema1:Product ; rdfs:label "ProteomeHD Data" ; dcterms:description "Compressed CSV file containing ProteomeHD v1.1, with 10,323 proteins measured across 294 SILAC ratios" ; schema1:url . kgr:rdf-portal.sparql.ebi a schema1:ProgrammingInterface ; rdfs:label "RDF Portal EBI SPARQL Endpoint" ; dcterms:description "SPARQL endpoint for EBI-derived RDF datasets, including AMR portal, BioModels, BioSample, ChEBI, ChEMBL, Ensembl (including GRCh37), GWAS Catalog and Reactome." ; schema1:url . kgr:rdf-portal.sparql.sib a schema1:ProgrammingInterface ; rdfs:label "RDF Portal SIB SPARQL Endpoint" ; dcterms:description "SPARQL endpoint for SIB-derived RDF datasets, including Bgee, Cellosaurus, OMA, Rhea and UniProt." ; schema1:url . kgr:ruralkg.graph a schema1:GraphProduct ; rdfs:label "Rural Resilience KG graph" ; dcterms:description "The Rural Resilience KG graph, a cross-domain RDF knowledge graph integrating health and justice data for rural resilience. It integrates justice/crime data from the National Incident-Based Reporting System (NIBRS), substance-use survey data from the National Survey on Drug Use and Health (NSDUH), mental health treatment providers from the National Directory of Mental Health Treatment Facilities, county rurality classifications from the USDA Rural-Urban Continuum Codes, and US administrative-area geography, served via the FRINK/Proto-OKN infrastructure." ; schema1:url . kgr:sniff.federation-nodes a schema1:GraphProduct ; rdfs:label "Sniff KGX federation export, nodes" ; dcterms:description "A Biolink-conformant KGX TSV node file for the Sniff cross-species substrate, covering dog and human genes and canine and human diseases. Part of the facts-only federation bundle intended for ingest into other knowledge graphs." ; schema1:url . kgr:aopwiki-rdf.ttl a schema1:GraphProduct ; rdfs:label "AOP-Wiki RDF Turtle Dataset" ; dcterms:description "The AOP-Wiki RDF dataset in RDF/Turtle, covering AOPs, key events, key event relationships, biological events, stressors and chemicals converted from the AOP-Wiki XML export, together with the gene mappings (HGNC approved symbols resolved to Ensembl, NCBI Gene, UniProt and Protein Ontology identifiers via BridgeDb) and the chemical and protein cross-reference enrichments. Distributed as Turtle files in the data/ directory of the conversion repository (AOPWikiRDF.ttl, AOPWikiRDF-Genes.ttl, AOPWikiRDF-Enriched.ttl); all of them are loaded together into the SPARQL endpoint and are meant to be used as one dataset. Regenerated weekly." ; schema1:url . kgr:cellminer.cellminercdb a schema1:GraphicalInterface ; rdfs:label "CellMinerCDB" ; dcterms:description "CellMinerCDB web application for integrative cross-database genomics and pharmacogenomics analysis of cancer cell lines, combining NCI-60 data with CCLE, GDSC, CTRP, PRISM, Project Achilles, NCI-DTP SCLC, MD Anderson and NCATS datasets." ; schema1:url . kgr:drkg.graph a schema1:GraphProduct ; rdfs:label "DRKG graph" ; dcterms:description "DRKG graph files, including a TSV of triples, embeddings, ID mappings, and a glossary of relation types." ; schema1:url . kgr:europepmc.textmined-terms a schema1:MappingProduct ; rdfs:label "Europe PMC Text-Mined Database Accession Links" ; dcterms:description "CSV files, one per database, linking Europe PMC articles to accessions text-mined from their full text, covering ArrayExpress, BioStudies, ChEBI, Cellosaurus, AlphaFold DB, BioProject, BioSample, BRENDA, CATH and others." ; schema1:url . kgr:genecards.gene.annotations a schema1:Product ; rdfs:label "GeneCards Gene Annotations" ; dcterms:description "Integrated gene annotation data aggregated from HGNC, OMIM, Ensembl, NCBI Gene, UniProt and other genomic databases" ; schema1:url . kgr:genophenoenvo-kg.data a schema1:GraphProduct ; rdfs:label "GenoPhenoEnvo KG Data" ; dcterms:description "Merged knowledge graph data files containing over 400,000 nodes and 5,000,000 edges integrating gene expression, molecular interactions, functions, pathways, homology-based annotations, and environmental exposures from Planteome, EMBL-EBI Expression Atlas, and other sources. Available as tab-separated value files in KGX format with nodes and edges following the Biolink model." ; schema1:url . kgr:hippie.current.mitab a schema1:Product ; rdfs:label "HIPPIE Current PSI-MI TAB Dataset" ; dcterms:description "Current HIPPIE v2.4 interaction dataset in PSI-MI TAB 2.5 format, last updated April 9, 2026" ; schema1:url . kgr:hippie.current.tab a schema1:Product ; rdfs:label "HIPPIE Current TAB Dataset" ; dcterms:description "Current HIPPIE v2.4 interaction dataset in the native HIPPIE tab-delimited format, last updated April 9, 2026" ; schema1:url . kgr:hra.data a schema1:Product ; rdfs:label "HRA Data Downloads" ; dcterms:description "Downloadable data files including anatomical structures, cell types, and biomarkers" ; schema1:url . kgr:imo-knowledge-graph.data a schema1:Product ; rdfs:label "IMO Health Knowledge Graph Content" ; dcterms:description "The proprietary clinical knowledge graph content itself, comprising IMO clinical interface terminology concepts, hierarchies, clinical relationships, and cross-maps to standard code systems including ICD-10-CM, ICD-10, SNOMED CT, CPT, LOINC, and RxNorm. Delivered under commercial license through the IMO Health APIs, EHR integrations, or bulk data agreements." ; schema1:url . kgr:irefindex.database a schema1:Product ; rdfs:label "iRefIndex Database" ; dcterms:description "Historical consolidated protein interaction index in PSI-MITAB 2.5 format aggregating data from BIND, BioGrid, DIP, HPRD, IntAct, MINT, MPact, MPPI and OPHID" . kgr:litvar.api a schema1:ProgrammingInterface ; rdfs:label "LitVar API" ; dcterms:description "RESTful API providing programmatic access to variant summaries, publications, search, and gene-level variant queries" ; schema1:url . kgr:litvar.web_interface a schema1:GraphicalInterface ; rdfs:label "LitVar Web Interface" ; dcterms:description "Web interface for searching and retrieving variant information from 35+ million PubMed articles with autocomplete, filtering, and entity highlighting" ; schema1:url . kgr:markerdb.api a schema1:ProgrammingInterface ; rdfs:label "MarkerDB API" ; dcterms:description "MarkerDB API documentation and endpoint examples for condition, chemical, genetic, protein, and karyotype biomarker records." ; schema1:url . kgr:med-rt.core_dts a schema1:Product ; rdfs:label "Core MED-RT DTS Archive" ; dcterms:description "Current MED-RT DTS release archive from the NCI EVS MED-RT distribution." ; schema1:url . kgr:med-rt.core_xml a schema1:Product ; rdfs:label "Core MED-RT XML Archive" ; dcterms:description "Current MED-RT XML release archive from the NCI EVS MED-RT distribution." ; schema1:url . kgr:mps-db.portal a schema1:GraphicalInterface ; rdfs:label "MPS-Db Web Portal" ; dcterms:description "MPS-Db web portal for browsing, analyzing and sharing microphysiology system study data alongside reference compound, bioactivity, preclinical and clinical data drawn from ChEMBL, PubChem, DrugBank, UniChem and FAERS (via OpenFDA)." ; schema1:url . kgr:obo-db-ingest.rhea.sssom.tsv a schema1:MappingProduct ; rdfs:label "rhea SSSOM" ; dcterms:description "rhea SSSOM" ; schema1:url . kgr:openpredict.predictions a schema1:Product ; rdfs:label "OpenPredict Prediction Data" ; dcterms:description "Pre-computed prediction outputs exposed through API operations for predicted drugs, predicted diseases, similar entities, and evidence paths" ; schema1:url . kgr:pharmacotherapydb.indications a schema1:Product ; rdfs:label "PharmacotherapyDB Indications TSV" ; dcterms:description "Curated TSV catalog of drug-disease indications classified as disease-modifying, symptomatic, or non-indications" ; schema1:url . kgr:proteomexchange.dataset-list a schema1:Product ; rdfs:label "ProteomeXchange Dataset Listing" ; dcterms:description "Full tab-separated listing of all public ProteomeXchange datasets (about 57,000 rows when checked on 2026-10-04), with identifier, title, repository, species, instrument, publication, lab head, announcement date and keywords. Some cells contain HTML anchor markup." ; schema1:url . kgr:proteomexchange.dataset-records a schema1:Product ; rdfs:label "ProteomeXchange Dataset Records" ; dcterms:description "Per-dataset ProteomeXchange announcement records retrieved by PXD accession from ProteomeCentral, available as ProteomeXchange XML (outputMode=XML) or JSON (outputMode=JSON). The URL shows dataset PXD000001 as an example." ; schema1:url . kgr:proteomexchange.proteomecentral a schema1:GraphicalInterface ; rdfs:label "ProteomeCentral" ; dcterms:description "ProteomeCentral, the central index of ProteomeXchange datasets announced by all member repositories, with search, filtering and browsing of datasets and spectral libraries, plus USI and Quetzal spectrum viewers." ; schema1:url . kgr:rdf-portal.sparql.ncbi a schema1:ProgrammingInterface ; rdfs:label "RDF Portal NCBI SPARQL Endpoint" ; dcterms:description "SPARQL endpoint for NCBI- and NLM-derived RDF datasets, including ClinVar, MedGen, MeSH, NCBI Gene, NLM Catalog, PubMed and PubTator Central." ; schema1:url . kgr:sib a "Organization" ; rdfs:label "Bgee Team - SIB Swiss Institute of Bioinformatics", "CALIPHO Group - SIB Swiss Institute of Bioinformatics", "Evgeny Zdobnov Lab - SIB Swiss Institute of Bioinformatics", "GlyConnect Team - SIB Swiss Institute of Bioinformatics", "MetaNetX Team - SIB Swiss Institute of Bioinformatics", "OMA Team - SIB Swiss Institute of Bioinformatics", "SIBiLS - Swiss Institute of Bioinformatics Literature Services" . kgr:tcrd.api a schema1:ProgrammingInterface ; rdfs:label "Pharos API" ; dcterms:description "RESTful API providing programmatic access to TCRD data through Pharos for computational workflows and custom applications" ; schema1:url . kgr:tcrd.database_download a schema1:Product ; rdfs:label "TCRD Database Downloads" ; dcterms:description "MySQL database dump files containing the complete TCRD relational database schema and data for local installation and analysis" ; schema1:url . kgr:tcrd.documentation a schema1:DocumentationProduct ; rdfs:label "TCRD Documentation" ; dcterms:description "Comprehensive documentation describing TCRD data sources, schema structure, and usage guidelines" ; schema1:url . kgr:translator.geneticskp.graph a schema1:GraphProduct ; rdfs:label "Translator Genetics KP KGX Graph" ; dcterms:description "KGX JSONL graph package for Genetics KP distributed via the NCATS Translator release site (release 2026_03_27; build geneticskp_2026-03-27_1f1ad62b_2025sep1_4.3.6; source version 2026-03-27; Biolink 4.3.6; Node Normalizer 2025sep1)." ; schema1:url . kgr:wildlifekn.graph a schema1:GraphProduct ; rdfs:label "Wildlife-KN Knowledge Graph" ; dcterms:description "The Wildlife-KN knowledge graph, an integrative RDF network of managed species and their habitats, environmental factors, and climate context, built to support wildlife management under climate change. It is served as Linked Data through the Wildlife-KN SPARQL and Triple Pattern Fragments endpoints." ; schema1:url . kgr:athena.mappings a schema1:MappingProduct ; rdfs:label "Athena Concept Mappings" ; dcterms:description "Concept mappings between different terminology systems" ; schema1:url . kgr:broad a "Organization" ; rdfs:label "Broad Institute", "Broad Institute Center for the Science of Therapeutics", "Broad Institute LINCS Transcriptomics Center", "Broad Institute Translator Team", "Broad Institute of MIT and Harvard", "DepMap Team, Broad Institute", "Project Achilles, Broad Institute" . kgr:chea.libraries a schema1:Product ; rdfs:label "ChEA Library Downloads" ; dcterms:description "Download catalog for ChEA3 transcription factor target libraries and benchmark datasets" ; schema1:url . kgr:chr.model.owl a schema1:OntologyProduct ; rdfs:label "Monochrom Ontology OWL release" ; dcterms:description "OWL release of Monochrom Ontology" ; schema1:url . kgr:ecrin-mdr.api a schema1:ProgrammingInterface ; rdfs:label "ECRIN MDR API" ; dcterms:description "REST API behind the MDR portal (MDR_FuiPortal.Server), with endpoints for study search, lookup by registry ID or PubMed ID, full study and object details, summary statistics and an OmicsDI export feed. Documented with Swagger/OpenAPI." ; schema1:url . kgr:ecrin-mdr.portal a schema1:GraphicalInterface ; rdfs:label "ECRIN MDR Portal" ; dcterms:description "Web portal for searching clinical studies and their data objects by keyword, registry identifier, PubMed ID or country, with CSV and JSON export of results." ; schema1:url . kgr:ecso.owl a schema1:OntologyProduct ; rdfs:label "ECSO OWL" ; dcterms:description "Current OWL release of ECSO (ECSO8.owl, version 0.10.0) in the DataONE sem-prov-ontologies repository, with merged imports of ENVO, PATO, CHEBI, RO, IAO and BFO terms" ; schema1:url . kgr:eram.downloads a schema1:Product ; rdfs:label "eRAM Data Downloads" ; dcterms:description "Downloadable data files containing rare disease annotations, phenotypes, symptoms, genes, and genotypes" ; schema1:url . kgr:eram.web a schema1:GraphicalInterface ; rdfs:label "eRAM Web Interface" ; dcterms:description "Web-based interface for browsing and querying rare disease annotations including phenotypes, symptoms, genes, and genotypes with tree-structured disease organization" ; schema1:url . kgr:genemania.networks a schema1:GraphProduct ; rdfs:label "GeneMANIA Interaction Network Archive" ; dcterms:description "Downloadable GeneMANIA interaction network data organized by release and organism, with individual networks, combined default networks, metadata, and identifier mapping tables in plain tab-delimited text files" ; schema1:url . kgr:humannet.network a schema1:GraphProduct ; rdfs:label "HumanNet Network File" ; dcterms:description "HumanNet-XC v3 functional gene network extended by co-citation, distributed with Entrez Gene identifiers." ; schema1:url . kgr:humannet.network.symbol a schema1:GraphProduct ; rdfs:label "HumanNet Network File (Gene Symbols)" ; dcterms:description "HumanNet-XC v3 functional gene network extended by co-citation, distributed with gene symbols." ; schema1:url . kgr:iid.human_annotated_ppis a schema1:GraphProduct ; rdfs:label "IID Human Annotated PPIs" ; dcterms:description "IID annotated human protein-protein interaction download." ; schema1:url . kgr:iid.mouse_annotated_ppis a schema1:GraphProduct ; rdfs:label "IID Mouse Annotated PPIs" ; dcterms:description "IID annotated mouse protein-protein interaction download." ; schema1:url . kgr:lncrnalyzr.graph a schema1:GraphProduct ; rdfs:label "lncRNAlyzr Knowledge Graph" ; dcterms:description "Neo4j knowledge graph containing lncRNAs, protein-coding genes, regulatory interactions, and disease associations" ; schema1:url . kgr:medgen.id-mappings a schema1:MappingProduct ; rdfs:label "MedGen ID Mappings" ; dcterms:description "Mappings between MedGen CUIs and external source identifiers with gzip compression" ; schema1:url . kgr:msigdb.downloads.human a schema1:Product ; rdfs:label "MSigDB Human Gene Sets Downloads" ; dcterms:description "Downloadable gene set files in GMT, XML, and other formats for human collections including hallmarks, curated pathways, ontologies, and computational signatures; free registration is required for downloads" ; schema1:url . kgr:msigdb.downloads.mouse a schema1:Product ; rdfs:label "MSigDB Mouse Gene Sets Downloads" ; dcterms:description "Downloadable gene set files for mouse collections including mouse-ortholog hallmarks, curated pathways, ontologies, and cell type signatures; free registration is required for downloads" ; schema1:url . kgr:nlm-ckn.graph a schema1:GraphProduct ; rdfs:label "nlm-ckn-graph" ; dcterms:description "The NLM-CKN knowledge graph of cellular phenotypes. It is built from triple assertions (subject-predicate-object) that link single-cell genomics experimental data (from the CELLxGENE Census) and computationally derived NS-Forest marker genes to the Cell Ontology and other reference ontologies, augmented with literature-derived assertions from text mining/NLP. The graph is produced by the NLM-CKN ETL pipeline as an ArangoDB archive and served via the web application at https://nlm-ckn.org." ; schema1:url . kgr:onco.all_json a schema1:GraphProduct ; rdfs:label "OnCo full corpus (JSON)" ; dcterms:description "Every OnCo record in one JSON file, each with its plain-English summary, technical summary, dated facts, relationship fields and source links." ; schema1:url . kgr:openpredict.api a schema1:ProgrammingInterface ; rdfs:label "OpenPredict API" ; dcterms:description "TRAPI 1.4 API for predicted drug treatments, drug-disease associations, similar entities, model metadata, and explanation endpoints" ; schema1:url . kgr:petagraph.graph a schema1:GraphProduct ; rdfs:label "Petagraph Knowledge Graph (Neo4J)" ; dcterms:description "A comprehensive multi-omics biomedical knowledge graph connecting genomic, transcriptomic, proteomic, and clinical data. Contains over 32 million nodes and 118 million relationships." ; schema1:url . kgr:raras.encyclopedia a schema1:GraphicalInterface ; rdfs:label "Raras Encyclopedia" ; dcterms:description "Rare disease encyclopedia for browsing disease families, disease records, and related knowledge graph content" ; schema1:url . kgr:raras.portal a schema1:GraphicalInterface ; rdfs:label "Raras Portal" ; dcterms:description "Main Raras portal for searching rare diseases, symptoms, genes, and patient communities" ; schema1:url . kgr:securechainkg.graph a schema1:GraphProduct ; rdfs:label "SecureChain KG Graph" ; dcterms:description "SecureChain knowledge graph of software supply-chain components, versions, dependencies, and vulnerabilities, served as RDF/Turtle via the project's SPARQL and Triple Pattern Fragments endpoints." ; schema1:url . kgr:skm.pss.live.boolnet.annotations a schema1:GraphProduct ; rdfs:label "PSS Live Downloads (BoolNet), node annotations" ; dcterms:description "Current PSS model in Boolean network format compatible with BoolDog and BoolNet. This file contains the node annotations." ; schema1:url . kgr:skm.pss.live.boolnet.graph a schema1:GraphProduct ; rdfs:label "PSS Live Downloads (BoolNet)" ; dcterms:description "Current PSS model in Boolean network format compatible with BoolDog and BoolNet" ; schema1:url . kgr:skm.pss.live.dot a schema1:GraphProduct ; rdfs:label "PSS Download (DOT, v1.0.0)" ; dcterms:description "PSS model (v1.0.0, October 2023) in DOT Language format compatible with Graphviz. The live/current DOT export endpoint was retired upstream; this points to the latest published versioned DOT export." ; schema1:url . kgr:skm.pss.live.sbgn a schema1:GraphProduct ; rdfs:label "PSS Live Download (SBGN-ML)" ; dcterms:description "Current PSS model in Systems Biology Graphical Notation XML format" ; schema1:url . kgr:skm.pss.live.sbml a schema1:GraphProduct ; rdfs:label "PSS Live Download (SBML)" ; dcterms:description "Current PSS model in Systems Biology Markup Language XML format" ; schema1:url . kgr:skm.pss.live.sif.dinar.graph a schema1:GraphProduct ; rdfs:label "PSS Live Download, DiNAR (SIF/LGL)" ; dcterms:description "Current PSS model in Simple Interaction Format compatible with Cytoscape. Reactions are collapsed to edges, FunctionalClusters are expanded to arabidopsis identifiers." ; schema1:url . kgr:skm.pss.live.sif.original.annotations a schema1:GraphProduct ; rdfs:label "PSS Live Download, original (SIF/LGL), node annotations" ; dcterms:description "Current PSS model in Simple Interaction Format compatible with Cytoscape. Reactions are represented as nodes (as in PSS Explorer and database schema). This file contains the node annotations." ; schema1:url . kgr:skm.pss.live.sif.original.graph a schema1:GraphProduct ; rdfs:label "PSS Live Download, original (SIF/LGL)" ; dcterms:description "Current PSS model in Simple Interaction Format compatible with Cytoscape. Reactions are represented as nodes (as in PSS Explorer and database schema)." ; schema1:url . kgr:skm.pss.live.sif.projection.annotations a schema1:GraphProduct ; rdfs:label "PSS Live Download, projection (SIF/LGL), node annotations" ; dcterms:description "Current PSS model in Simple Interaction Format compatible with Cytoscape. Reactions are collapsed to edges. This file contains the node annotations." ; schema1:url . kgr:skm.pss.live.sif.projection.graph a schema1:GraphProduct ; rdfs:label "PSS Live Download, projection (SIF/LGL)" ; dcterms:description "Current PSS model in Simple Interaction Format compatible with Cytoscape. Reactions are collapsed to edges." ; schema1:url . kgr:chea-kg.graph a schema1:GraphProduct ; rdfs:label "ChEA-KG Database" ; dcterms:description "Neo4j knowledge graph integrating transcription factor target libraries, coexpression networks, and benchmark datasets used by the ChEA3 resource" . kgr:chea-kg.libraries a schema1:Product ; rdfs:label "ChEA-KG Library Downloads" ; dcterms:description "Download catalog for ChEA3 transcription factor target libraries, benchmark datasets, and additional supporting libraries" ; schema1:url . kgr:dorothea.graph a schema1:GraphProduct ; rdfs:label "DoRothEA Regulon Graph" ; dcterms:description "Core TF–target regulon knowledge graph (multi-species) with confidence levels (A–E)" ; schema1:url . kgr:icees-kg.graph a schema1:GraphProduct ; rdfs:label "KGX distribution of the ICEES Exposures KP" ; dcterms:description "KGX distribution of the ICEES Exposures KP in Knowledge Graph Exchange (KGX) format, containing integrated clinical and environmental exposures data as a knowledge graph with 226 nodes and 14,342 edges" ; schema1:url . kgr:kg-jensenlab-diseases.edges.kgx a schema1:GraphProduct ; rdfs:label "DISEASES KGX edges" ; dcterms:description "KGX edges file for JensenLab DISEASES KG" ; schema1:url . kgr:kg-jensenlab-diseases.edges.trapi a schema1:GraphProduct ; rdfs:label "DISEASES TRAPI edges" ; dcterms:description "TRAPI edges file for JensenLab DISEASES KG" ; schema1:url . kgr:kg-jensenlab-diseases.nodes.kgx a schema1:GraphProduct ; rdfs:label "DISEASES KGX nodes" ; dcterms:description "KGX nodes file for JensenLab DISEASES KG" ; schema1:url . kgr:medgen.mgrel a schema1:MappingProduct ; rdfs:label "MGREL (Relationships)" ; dcterms:description "Rich Release Format (RRF) file containing relationships between concepts with gzip compression" ; schema1:url . kgr:medgen.mgsat a schema1:Product ; rdfs:label "MGSAT (Attributes)" ; dcterms:description "Rich Release Format (RRF) file containing attributes and properties with gzip compression" ; schema1:url . kgr:medgen.names a schema1:Product ; rdfs:label "NAMES" ; dcterms:description "Rich Release Format (RRF) file containing concept names for search with gzip compression" ; schema1:url . kgr:aop-db.data a schema1:Product ; rdfs:label "AOP-DB Data" ; dcterms:description "The EPA has developed the Adverse Outcome Pathway Database (AOP-DB) to better characterize adverse outcomes of toxicological interest that are relevant to human health and the environment. Since its inception, the AOP-DB has been developed with the aim of integrating AOP molecular target information with other publicly available datasets to facilitate computational analyses of AOP information." ; schema1:url . kgr:cfde-gse.genesets a schema1:Product ; rdfs:label "CFDE Gene Set Collections" ; dcterms:description "Standardized gene set collections from Common Fund programs in GMT format" ; schema1:url . kgr:cfde-gse.graph a schema1:GraphProduct ; rdfs:label "CFDE-GSE Knowledge Graph" ; dcterms:description "Neo4j knowledge graph containing integrated gene sets from multiple Common Fund programs with cross-references" . kgr:date.archive a schema1:Product ; rdfs:label "DATE Archive ZIP" ; dcterms:description "ZIP with two TSV files: Drug_target_reactome_pathway.tsv (611,655 rows) and Drug_target_reactome_pathway_filtered.tsv (238,317 rows, parent pathways removed), with columns for expression dataset, drug name and STITCH ID, tissue, cell line, target UniProt ID and symbol, target class, pathway and pathway size." ; schema1:url . kgr:eco-kg.graph a schema1:GraphProduct ; rdfs:label "eco-KG Graph" ; dcterms:description "Knowledge graph containing plant traits data from Planteome and EOL TraitBank" ; schema1:url . kgr:foodb.data.csv a schema1:Product ; rdfs:label "FooDB CSV Data" ; dcterms:description "Complete FooDB database in CSV format" ; schema1:url . kgr:foodb.data.json a schema1:Product ; rdfs:label "FooDB JSON Data" ; dcterms:description "Complete FooDB database in JSON format" ; schema1:url . kgr:foodb.data.mysql a schema1:Product ; rdfs:label "FooDB MySQL Dump" ; dcterms:description "Complete FooDB database as MySQL dump" ; schema1:url . kgr:foodb.data.xml a schema1:Product ; rdfs:label "FooDB XML Data" ; dcterms:description "Complete FooDB database in XML format" ; schema1:url . kgr:foodb.web a schema1:GraphicalInterface ; rdfs:label "FooDB Web Interface" ; dcterms:description "Web interface that allows searching, browsing, and exploring food compounds and their properties." ; schema1:url . kgr:icees-kg.metadata a schema1:Product ; rdfs:label "ICEES KG Metadata" ; dcterms:description "Meta knowledge graph and metadata describing the data sources, node types, edge types, and predicates available in ICEES KG" ; schema1:url . kgr:icees-kg.trapi a schema1:ProgrammingInterface ; rdfs:label "ICEES KG TRAPI API" ; dcterms:description "Translator Reasoner API (TRAPI) endpoint for querying ICEES KG using standardized Translator protocols" ; schema1:url . kgr:medgen.mgconso a schema1:Product ; rdfs:label "MGCONSO (Concept Names)" ; dcterms:description "Rich Release Format (RRF) file containing concept names and source identifiers with gzip compression" ; schema1:url . kgr:nde.graph a schema1:GraphProduct ; rdfs:label "NIAID Data Ecosystem KG (graph)" ; dcterms:description "RDF (Turtle) knowledge graph of the NIAID Data Ecosystem, harmonizing dataset and computational-tool metadata harvested from NIAID-funded and globally-relevant infectious and immune-mediated disease repositories. Served through the Proto-OKN FRINK federated SPARQL platform." ; schema1:url . kgr:rdf-portal.sparql.primary a schema1:ProgrammingInterface ; rdfs:label "RDF Portal Primary SPARQL Endpoint" ; dcterms:description "SPARQL endpoint for the primary RDF Portal datasets, mostly from Japanese projects and partner databases (for example BacDive, BRENDA, GlyTouCan, GTDB, HGNC, HomoloGene, ICGC, jPOST, MediaDive, NANDO, PubCaseFinder and TogoID)." ; schema1:url . kgr:skm.ckn.v1.annotations a schema1:GraphProduct ; rdfs:label "CKN v1 (June 2018), node annotations" ; dcterms:description "Comprehensive Knowledge Network v1 in SIF/LGL format. This file contains the node annotations." ; schema1:url . kgr:skm.ckn.v1.graph a schema1:GraphProduct ; rdfs:label "CKN v1 (June 2018)" ; dcterms:description "Comprehensive Knowledge Network v1 in SIF/LGL format" ; schema1:url . kgr:skm.ckn.v2.annotations a schema1:GraphProduct ; rdfs:label "CKN v2 (June 2023), node annotations" ; dcterms:description "Comprehensive Knowledge Network v2 in SIF/LGL format with 26,234 entities and ~500,000 interactions. This file contains the node annotations." ; schema1:url . kgr:skm.ckn.v2.graph a schema1:GraphProduct ; rdfs:label "CKN v2 (June 2023)" ; dcterms:description "Comprehensive Knowledge Network v2 in SIF/LGL format with 26,234 entities and ~500,000 interactions" ; schema1:url . kgr:togows.rest-api a schema1:ProgrammingInterface ; rdfs:label "TogoWS REST API" ; dcterms:description "REST API for retrieving entries, or individual fields of entries, from UniProt, ENA, DDBJ, NCBI Nucleotide, NCBI Gene, dbSNP, PubMed, PDB and KEGG (entry endpoint), and for searching UniProt, ENA, NCBI Nucleotide, dbSNP, PubMed, OMIM and PDB (search endpoint), with JSON, Turtle, XML, GFF or FASTA output." ; schema1:url . kgr:cardiokg.neo4j a schema1:GraphProduct ; rdfs:label "CardioKG Neo4j graph construction scripts" ; dcterms:description "Neo4j construction artifacts for CardioKG, including Cypher scripts to create graph nodes and add edges. The GitHub repository is no longer available; these files are inside the archived Zenodo snapshot." ; schema1:url . kgr:forum.graph.dump a schema1:GraphProduct ; rdfs:label "FORUM Knowledge Graph SPARQL Endpoint" ; dcterms:description "Public SPARQL endpoint (OpenLink Virtuoso) providing query access to the complete FORUM knowledge graph. The former credentialed FTP tarball dump (2021) is no longer published; the SPARQL endpoint is the current canonical access point for the full RDF graph." ; schema1:url . kgr:hra-kg.graph.json a schema1:GraphProduct ; rdfs:label "HRA KG graph data, v2.2, JSON-LD format" ; dcterms:description "The graph representation of the Human Reference Atlas (HRA) dataset, v2.2, JSON-LD format" ; schema1:url . kgr:hra-kg.graph.nq a schema1:GraphProduct ; rdfs:label "HRA KG graph data, v2.2, N-Quads format" ; dcterms:description "The graph representation of the Human Reference Atlas (HRA) dataset, v2.2, N-Quads format" ; schema1:url . kgr:hra-kg.graph.nt a schema1:GraphProduct ; rdfs:label "HRA KG graph data, v2.2, N-Triples format" ; dcterms:description "The graph representation of the Human Reference Atlas (HRA) dataset, v2.2, N-Triples format" ; schema1:url . kgr:hra-kg.graph.ttl a schema1:GraphProduct ; rdfs:label "HRA KG graph data, v2.2, Turtle format" ; dcterms:description "The graph representation of the Human Reference Atlas (HRA) dataset, v2.2, Turtle format" ; schema1:url . kgr:hra-kg.graph.xml a schema1:GraphProduct ; rdfs:label "HRA KG graph data, v2.2, RDF/XML format" ; dcterms:description "The graph representation of the Human Reference Atlas (HRA) dataset, v2.2, RDF/XML format" ; schema1:url . kgr:kg-predict.gpkg a schema1:GraphProduct ; rdfs:label "GP-KG Knowledge Graph Data" ; dcterms:description "GP-KG tab-delimited knowledge graph containing 1,246,726 associations between 61,146 entities from multiple genotypic and phenotypic databases" ; schema1:url . kgr:kinace.portal a schema1:GraphicalInterface ; rdfs:label "KiNet Web Portal" ; dcterms:description "Interactive Shiny web interface for exploring and visualizing human kinase-substrate interactions" ; schema1:url . kgr:ars.api a schema1:ProgrammingInterface ; rdfs:label "ARS API" ; dcterms:description "TRAPI-compatible ARS endpoint for asynchronous query submission." ; schema1:url . kgr:ars.portal a schema1:GraphicalInterface ; rdfs:label "ARS Production Portal" ; dcterms:description "JSON index of the ARS production relay server and its registered agent endpoints." ; schema1:url . kgr:athena.vocabularies a schema1:Product ; rdfs:label "Athena Vocabulary Downloads" ; dcterms:description "Downloadable standardized vocabulary bundles for OMOP CDM assembled through the authenticated Athena web application" ; schema1:url . kgr:cqs.code a schema1:ProcessProduct ; rdfs:label "CQS Source Repository" ; dcterms:description "Source code and templates implementing Curated Query Service inference logic." ; schema1:url . kgr:digcfdekg.graph a schema1:GraphProduct ; rdfs:label "CFDE REVEAL Knowledge Graph" ; dcterms:description "Statistically inferred genomic evidence graph connecting genes, gene sets, inferred disease mechanisms, and human phenotypes. Gene sets are derived from eleven NIH Common Fund programs (GlyGen, GTEx, IDG, IMPC/KOMP2, LINCS, MoTrPAC, Bridge2AI, HuBMAP, Metabolomics Workbench, SenNet, and SPARC) and phenotype-gene set relationships are computed with PIGEAN (Priors Inferred from GEne ANnotations)." ; schema1:url . kgr:metabokg.schema a schema1:DataModelProduct ; rdfs:label "MetaBoKG RDF Schema" ; dcterms:description "Turtle schema files defining MetaBoKG classes, properties, and ReDU class hierarchies used by the generated knowledge graph." ; schema1:url . kgr:myvariant.api a schema1:ProgrammingInterface ; rdfs:label "MyVariant.info API" ; dcterms:description "MyVariant.info REST API (v1) for variant query and annotation retrieval by HGVS id or rsid, with batch POST queries and field filtering. Returns JSON documents merged from the integrated sources, on hg19 and hg38." ; schema1:url . kgr:ncatsgardkg.graph a schema1:GraphProduct ; rdfs:label "NCATS GARD Knowledge Graph" ; dcterms:description "Integrated rare-disease knowledge graph produced by the RD-Clust workflow, connecting rare diseases to genes, phenotypes, Gene Ontology terms, drugs/ligands, and pathway interactions. Distributed as the processed disease ontograph within the RD-Clust repository." ; schema1:url . kgr:hetionet.data.edges a schema1:GraphProduct ; rdfs:label "Hetionet v1.0 edges (SIF)" ; dcterms:description "Hetionet v1.0 as SIF edges" ; schema1:url . kgr:hetionet.data.json a schema1:GraphProduct ; rdfs:label "Hetionet v1.0 JSON" ; dcterms:description "Hetionet v1.0 in JSON format" ; schema1:url . kgr:hetionet.data.neo4j a schema1:GraphProduct ; rdfs:label "Hetionet v1.0 Neo4j" ; dcterms:description "Hetionet v1.0 as a Neo4j database" ; schema1:url . kgr:hetionet.data.nodes a schema1:GraphProduct ; rdfs:label "Hetionet v1.0 nodes (TSV)" ; dcterms:description "Hetionet v1.0 as TSV nodes" ; schema1:url . kgr:hetionet.hetnetpy a schema1:ProcessProduct ; rdfs:label "hetnetpy" ; dcterms:description "Python package for creating, querying, and operating on hetnets (heterogeneous networks)" ; schema1:url . kgr:hetionet.neo4j a schema1:GraphicalInterface ; rdfs:label "Hetionet v1.0 Neo4j Database" ; dcterms:description "Browser for complete Hetionet v1.0 graph database in Neo4j" ; schema1:url . kgr:hetionet.search a schema1:GraphicalInterface ; rdfs:label "Hetnet Connectivity Search" ; dcterms:description "Web application to search and explore connectivity between nodes in Hetionet" ; schema1:url . kgr:orkg.dump a schema1:GraphProduct ; rdfs:label "ORKG RDF Dump" ; dcterms:description "RDF dump of the Open Research Knowledge Graph distributed in N-Triples format." ; schema1:url . kgr:pavs-kg.phenopackets a schema1:Product ; rdfs:label "PAVS Phenopackets" ; dcterms:description "Combined GA4GH Phenopackets v2 JSON file of all PAVS cases, with HPO phenotypes, variants, genes, zygosity, pathogenicity and disease diagnoses." ; schema1:url . kgr:pharmkg.graph a schema1:GraphProduct ; rdfs:label "PharmKG graph" ; dcterms:description "Cleaned benchmark graph (PharmKG-8k) with typed relations between genes, chemicals, and diseases" ; schema1:url . kgr:sawgraph.graph a schema1:GraphProduct ; rdfs:label "SAWGraph PFAS Knowledge Graph" ; dcterms:description "The SAWGraph PFAS knowledge graph, integrating PFAS observations and releases with the samples, geospatial features, environmental media, and chemical substances they describe. The RDF (Turtle) graph is constructed from federal and state PFAS datasets and geospatial reference data, and is served through the SAWGraph SPARQL and Triple Pattern Fragments endpoints." ; schema1:url . kgr:disgenet.data a schema1:GraphProduct ; rdfs:label "DisGeNET Data" ; dcterms:description "DisGeNET data, including gene to disease associations and variant to disease associations (requires registration and subscription)." ; schema1:url . kgr:kg-covid-19.graph a schema1:GraphProduct ; rdfs:label "KG-COVID-19 graph" ; dcterms:description "KGX nodes and edges for KG-COVID-19" ; schema1:url . kgr:klocd.portal a schema1:GraphicalInterface ; rdfs:label "KLOCD Web Interface" ; dcterms:description "KLOCD web interface for searching its drug, chemical, gene expression dataset, disease, toxicant, literature, patent and organ-on-chip model sub-databases, built from PubMed, PubChem, TogoWS, UniChem, DrugBank, ChEMBL, ClinicalTrials.gov, AACT, the European Medicines Agency, CTD, NCBI GEO, openFDA and Disease Ontology, among other public sources." ; schema1:url . kgr:micromap.api a schema1:ProgrammingInterface ; rdfs:label "MicroMap API" ; dcterms:description "REST API and MCP server over the production MicroMap Neo4j graph, with endpoints for taxa, diseases, metabolites, drugs, genes, proteins, pathways, biomarker signatures, papers, cross-feeding networks, provenance and graph traversal. Access requires a Graphomics API key. The API application code is in the open-source repository." ; schema1:url . kgr:multiomics-kp.graph a schema1:GraphProduct ; rdfs:label "Multiomics KP Knowledge Graph" ; dcterms:description "Live TRAPI/BioThings metadata endpoint for the Multiomics BigGIM-DrugResponse KP, exposing the multiomics knowledge graph served by the Multiomics Provider (built from GTEx, TCGA, and drug-response data, with additional clinical-trials, drug-approval and knowledge-resource inputs)." ; schema1:url . kgr:indra.cogex.code a schema1:ProcessProduct ; rdfs:label "INDRA CoGEx Build Code" ; dcterms:description "INDRA CoGEx is a graph database integrating causal relations, ontological relations, properties, and data, assembled at scale automatically from the scientific literature and structured sources. This is the code to build the graph." ; schema1:url . kgr:kg-idg.graph a schema1:GraphProduct ; rdfs:label "KGX Distribution of KG-IDG" ; dcterms:description "KGX Distribution of KG-IDG" ; schema1:url . kgr:medgen.mgdef a schema1:Product ; rdfs:label "MGDEF (Definitions)" ; dcterms:description "Rich Release Format (RRF) file containing definitions and descriptions with gzip compression" ; schema1:url . kgr:mychem.api a schema1:ProgrammingInterface ; rdfs:label "MyChem.info API" ; dcterms:description "MyChem.info REST API (v1) for querying chemical and drug annotation records by keyword, field or identifier (InChIKey, ChEMBL, DrugBank, PubChem, ChEBI and UNII IDs), with batch queries over POST. Data in each record keep the license of their original source." ; schema1:url . kgr:oregano.graph a schema1:GraphProduct ; rdfs:label "OREGANO Knowledge Graph" ; dcterms:description "The OREGANO knowledge graph dataset integrating drug, protein, gene, and disease information for drug repositioning." ; schema1:url . kgr:pharmdb.graph a schema1:GraphProduct ; rdfs:label "PharmDB-K Graph" ; dcterms:description "Integrated pharmacological knowledge graph (PharmDB-K) of drugs, targets, diseases, and associations" . kgr:primekg.graph a schema1:GraphProduct ; rdfs:label "PrimeKG Full Dataset" ; dcterms:description "The full PrimeKG dataset containing disease relationships." ; schema1:url . kgr:drugmechdb.graph a schema1:GraphProduct ; rdfs:label "DrugMechDB Graph Dataset" ; dcterms:description "Curated mechanistic drug–disease paths comprising the DrugMechDB dataset packaged as a downloadable archive." ; schema1:url . kgr:gp-kg.graph a schema1:GraphProduct ; rdfs:label "GP-KG" ; dcterms:description "GP_KG.txt" ; schema1:url . kgr:iptmnet.ptm a schema1:GraphProduct ; rdfs:label "iPTMnet PTM Table" ; dcterms:description "Current iPTMnet PTM record table with PTM type, source, UniProt protein, organism, site, enzyme, relation identifiers, and publication evidence." ; schema1:url . kgr:kg-microbe.graph.biomedical a schema1:GraphProduct ; rdfs:label "KG-Microbe KGX Graph - Biomedical" ; dcterms:description "Core plus human biomedical data (ontologies, CTD, Wallen et al)" ; schema1:url . kgr:kg-microbe.graph.biomedical-function a schema1:GraphProduct ; rdfs:label "KG-Microbe KGX Graph - Biomedical-Function" ; dcterms:description "Biomedical plus Uniprot genome annotations" ; schema1:url . kgr:kg-microbe.graph.core a schema1:GraphProduct ; rdfs:label "KG-Microbe KGX Graph - Core" ; dcterms:description "The core KG KG-Microbe-Core with ontologies, organismal traits, and growth preferences." ; schema1:url . kgr:kg-microbe.graph.function a schema1:GraphProduct ; rdfs:label "KG-Microbe KGX Graph - Function" ; dcterms:description "Core plus Uniprot genome annotations" ; schema1:url . kgr:kg-microbe.graph.raw a schema1:GraphProduct ; rdfs:label "KG-Microbe KGX Graph - Raw" ; dcterms:description "Raw source files for all KG-Microbe framework transforms (all 4 KGs)" ; schema1:url . kgr:bioregistry.registry.json a schema1:Product ; rdfs:label "Bioregistry JSON Export" ; dcterms:description "Full Bioregistry export as JSON, with every prefix record including names, synonyms, URI formats, local identifier patterns, providers and mappings to the prefixes of other registries." ; schema1:url . kgr:bioregistry.sssom a schema1:MappingProduct ; rdfs:label "Bioregistry SSSOM Mappings" ; dcterms:description "SSSOM mappings between Bioregistry prefixes and the equivalent prefixes in other registries, such as OBO Foundry, BioPortal, OLS, Wikidata, the Gene Ontology registry, Cellosaurus, UniProt and NCBI." ; schema1:url . kgr:epigraphdb.graph a schema1:GraphProduct ; rdfs:label "EpiGraphDB Graph Database" ; dcterms:description "Integrated graph knowledge base combining Mendelian randomization causal estimates, pathway, QTL, drug, literature-derived, and ontology-backed relationships (Neo4j backend)" ; schema1:url . kgr:medgen.csv a schema1:Product ; rdfs:label "CSV Data Files" ; dcterms:description "CSV format data files directory with additional data exports" ; schema1:url . kgr:medkg.site a schema1:GraphicalInterface ; rdfs:label "MedKG Site" ; dcterms:description "Graphical interface for MedKG" ; schema1:url . kgr:metabokg.graph a schema1:GraphProduct ; rdfs:label "MetaboKG RDF Graph" ; dcterms:description "RDF knowledge graph materialized by the MetaBoKG workflow from public metabolomics repository outputs, GNPS molecular-networking jobs, annotation evidence, sample metadata, and environmental and taxonomic context. The repository documents generated per-job Turtle files under mapping/kg and loading into Virtuoso named graphs." ; schema1:url . kgr:enrichr-kg.graph a schema1:GraphProduct ; rdfs:label "Enrichr-KG Neo4j Database" ; dcterms:description "Neo4j graph database integrating Enrichr gene set libraries with genes, terms, pathways, diseases, drugs, cell types, and other functional annotations" ; schema1:url . kgr:kg-monarch.graph a schema1:GraphProduct ; rdfs:label "KGX Distribution of KG-Monarch" ; dcterms:description "KGX Distribution of KG-Monarch" ; schema1:url . kgr:kg-monarch.graph.duckdb a schema1:GraphProduct ; rdfs:label "DuckDB database of KG-Monarch" ; dcterms:description "DuckDB database of KG-Monarch" ; schema1:url . kgr:kg-monarch.graph.jsonl a schema1:GraphProduct ; rdfs:label "KGX JSON-L Distribution of KG-Monarch" ; dcterms:description "KGX JSON-Lines Distribution of KG-Monarch" ; schema1:url . kgr:kg-monarch.graph.jsonl.edges a schema1:GraphProduct ; rdfs:label "KGX JSON-L Distribution of KG-Monarch Edges" ; dcterms:description "KGX JSON-Lines Distribution of KG-Monarch (Edges)" ; schema1:url . kgr:kg-monarch.graph.jsonl.nodes a schema1:GraphProduct ; rdfs:label "KGX JSON-L Distribution of KG-Monarch Nodes" ; dcterms:description "KGX JSON-Lines Distribution of KG-Monarch (Nodes)" ; schema1:url . kgr:kg-monarch.graph.neo4j a schema1:GraphProduct ; rdfs:label "Neo4j Dump of KG-Monarch" ; dcterms:description "Neo4j Dump of KG-Monarch" ; schema1:url . kgr:kg-monarch.graph.neo4j.edges a schema1:GraphProduct ; rdfs:label "Neo4j Dump of KG-Monarch Edges" ; dcterms:description "Neo4j Dump of KG-Monarch Edges" ; schema1:url . kgr:kg-monarch.graph.neo4j.nodes a schema1:GraphProduct ; rdfs:label "Neo4j Dump of KG-Monarch Nodes" ; dcterms:description "Neo4j Dump of KG-Monarch Nodes" ; schema1:url . kgr:kg-monarch.graph.rdf a schema1:GraphProduct ; rdfs:label "RDF Distribution of KG-Monarch" ; dcterms:description "RDF Distribution of KG-Monarch" ; schema1:url . kgr:mechreponet.kg rdfs:label "MechRepoNet Knowledge Graph" ; dcterms:description "The MechRepoNet knowledge graph in its original format" ; schema1:url . kgr:neo.model a schema1:OntologyProduct ; rdfs:label "neo OWL release" ; dcterms:description "OWL release of neo" ; schema1:url . kgr:neo.obo a schema1:OntologyProduct ; rdfs:label "NEO (OBO format)" ; dcterms:description "OBO format release of NEO, built from the same weekly GPI-based build as neo.owl." ; schema1:url . kgr:rna-kg.kg.edges a schema1:GraphProduct ; rdfs:label "RNA-KG Edges" ; dcterms:description "RNA-KG Edges in CSV format" ; schema1:url . kgr:rna-kg.kg.neo4j a schema1:GraphProduct ; rdfs:label "RNA-KG Neo4j Dump" ; dcterms:description "RNA-KG as a Neo4j Dump" ; schema1:url . kgr:rna-kg.kg.nodes a schema1:GraphProduct ; rdfs:label "RNA-KG Nodes" ; dcterms:description "RNA-KG Nodes in CSV format" ; schema1:url . kgr:ibkh.graph a schema1:GraphProduct ; rdfs:label "iBKH Knowledge Graph" ; dcterms:description "The integrative Biomedical Knowledge Hub (iBKH) knowledge graph, harmonizing and integrating information from diverse biomedical resources including DRKG, iDISK, and multiple databases (BRENDA, CTD, DrugBank, KEGG, PharmGKB, Reactome, SIDER, and others)." . kgr:microbiomekg.api a schema1:ProgrammingInterface ; rdfs:label "MicrobiomeKG Plover TRAPI API" ; dcterms:description "Plover-hosted TRAPI web API for querying the Multiomics Microbiome knowledge graph" ; schema1:url . kgr:stitch.api a schema1:ProgrammingInterface ; rdfs:label "STITCH API" ; dcterms:description "API for programmatic access to STITCH chemical-protein interaction data" ; schema1:url . kgr:stitch.downloads a schema1:Product ; rdfs:label "STITCH Data Downloads" ; dcterms:description "Downloadable data files containing chemical-protein interaction networks" ; schema1:url . kgr:stitch.portal a schema1:Product ; rdfs:label "STITCH Web Portal" ; dcterms:description "Web interface for searching and visualizing chemical-protein interactions across organisms" ; schema1:url . kgr:pavs-kg.api a schema1:ProgrammingInterface ; rdfs:label "PAVS REST API" ; dcterms:description "FastAPI REST API backing the PAVS portal, with OpenAPI documentation, for case search and SPARQL-backed queries." ; schema1:url . kgr:pavs-kg.portal a schema1:GraphicalInterface ; rdfs:label "PAVS Web Portal" ; dcterms:description "PAVS web portal with phenotype-based semantic similarity search, gene and variant browsers, and an HPO hierarchy explorer over the knowledge graph." ; schema1:url . kgr:pavs-kg.sparql a schema1:ProgrammingInterface ; rdfs:label "PAVS SPARQL Endpoint" ; dcterms:description "Public Virtuoso SPARQL endpoint for the PAVS knowledge graph, containing Saudi case records, gene annotations, HPO disease annotations, HPO information content values and literature phenopackets as RDF named graphs." ; schema1:url . kgr:knowwheregraph.graph a schema1:GraphProduct ; rdfs:label "KnowWhereGraph RDF Knowledge Graph" ; dcterms:description "KnowWhereGraph knowledge graph with 29+ billion RDF triples integrating 30+ environmental and geospatial data layers accessible through SPARQL endpoint" ; schema1:url . kgr:alzkb.browser a schema1:GraphicalInterface ; rdfs:label "AlzKB Graph Database Browser" ; dcterms:description "A browser interface for a knowledge graph for Alzheimer's Disease." ; schema1:url . kgr:alzkb.data a schema1:GraphProduct ; rdfs:label "AlzKB Data Release (Version 2.0.0)" ; dcterms:description "Memgraph data release for AlzKB." ; schema1:url . kgr:np-kg.graph.networkx a schema1:GraphProduct ; rdfs:label "NP-KG gpickle" ; dcterms:description "Merged KG with ontology-grounded KG and literature-based graph as NetworkX multidigraph object" ; schema1:url . kgr:np-kg.graph.tsv a schema1:GraphProduct ; rdfs:label "NP-KG TSV" ; dcterms:description "Merged KG with ontology-grounded KG and literature-based graph as TSV file" ; schema1:url . kgr:automat.robokopkg a schema1:GraphProduct ; rdfs:label "robokopkg" ; dcterms:description "Robokop KG (Automat)" ; schema1:url . kgr:ncbi a schema1:DataSource, "Organization" ; rdfs:label "ClinVar Team, National Center for Biotechnology Information (NCBI)", "MedGen Team (NCBI)", "NCBI", "NCBI Computational Biology Branch", "NCBI Gene Database", "NCBI Help Desk", "NCBI PubMed Help Desk", "NLM UMLS Customer Support", "National Center for Biotechnology Information", "National Center for Biotechnology Information (NCBI)", "National Center for Biotechnology Information (NCBI) Bookshelf", "National Center for Biotechnology Information (NCBI), U.S. National Library of Medicine", "National Library of Medicine", "National Library of Medicine (NLM)", "National Library of Medicine Clinical Trials Team", "US National Library of Medicine", "dbGaP Team, National Center for Biotechnology Information (NCBI)" ; dcterms:created "2026-02-26T00:00:00+00:00"^^xsd:dateTime ; dcterms:description "The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information, databases, tools, and services." ; dcterms:identifier "ncbi" ; dcterms:license ; dcterms:modified "2026-05-30T00:00:00+00:00"^^xsd:dateTime ; schema1:hasPart kgr:bioregistry.registry.json, kgr:bioregistry.sssom, kgr:cngbdb.portal, kgr:ddbj.arsa, kgr:ddbj.bioproject, kgr:ddbj.biosample, kgr:ddbj.getentry, kgr:ddbj.release, kgr:ddbj.search, kgr:metatraits.gtdb2ncbi, kgr:metatraits.ncbi.family-summary, kgr:metatraits.ncbi.genus-summary, kgr:metatraits.ncbi.species-summary, kgr:metatraits.ncbi2gtdb, kgr:ncbi.datasets-api, kgr:ncbi.gc, kgr:obo-db-ingest.ncbi.gc.json, kgr:obo-db-ingest.ncbi.gc.obo, kgr:obo-db-ingest.ncbi.gc.owl, kgr:obo-db-ingest.ncbi.gc.sssom.tsv, kgr:obo-db-ingest.ncbi.gc.tsv ; schema1:name "National Center for Biotechnology Information" ; skos:inScheme "biomedical", "genomics", "literature" ; adms:status "Active" ; foaf:homepage . kgr:pubchem.substances.asn a schema1:Product ; rdfs:label "PubChem Substances ASN" ; dcterms:description "PubChem substance information in ASN.1 format" ; schema1:url . kgr:pubchem.substances.sdf a schema1:Product ; rdfs:label "PubChem Substances SDF" ; dcterms:description "PubChem substance information in SDF format" ; schema1:url . kgr:genomickb.graph a schema1:GraphProduct ; rdfs:label "GenomicKB Graph Dump" ; dcterms:description "GenomicKB 1.0 Neo4j Database Dump (Requires license)" ; schema1:url . kgr:kg-alzheimers.graph a schema1:GraphProduct ; rdfs:label "KGX Distribution of KG-Alzheimers" ; dcterms:description "KGX Distribution of KG-Alzheimers" ; schema1:url . kgr:rtx-kg2.graph.edges a schema1:GraphProduct ; rdfs:label "RTX-KG2.10.1c KGX JSONL Edges" ; dcterms:description "Edges for KGX distribution of the RTX-KG2 (RTX-KG2.10.1c)" ; schema1:url . kgr:rtx-kg2.graph.nodes a schema1:GraphProduct ; rdfs:label "RTX-KG2.10.1c KGX JSONL Nodes" ; dcterms:description "Nodes for KGX distribution of the RTX-KG2 (RTX-KG2.10.1c)" ; schema1:url . kgr:rtx-kg2.neo4j a schema1:ProgrammingInterface ; rdfs:label "RTX-KG2 Neo4j" ; dcterms:description "Neo4j distribution of the RTX-KG2 as a graph database" ; schema1:url . kgr:mygene.api a schema1:ProgrammingInterface ; rdfs:label "MyGene.info API" ; dcterms:description "MyGene.info REST API (v3) for gene query and annotation retrieval by Entrez or Ensembl gene id, with batch POST queries and field filtering. Returns JSON documents merged from the integrated sources." ; schema1:url . kgr:pathwaycommons.biopax a schema1:Product ; rdfs:label "Integrated BioPAX Model" ; dcterms:description "PC v14 integrated BioPAX Level 3 unified model containing normalized pathway data, molecular interactions, cross-database entity mappings, and metadata-derived content from 26 datasource rows." ; schema1:url . kgr:pathwaycommons.downloads a schema1:Product ; rdfs:label "Pathway Commons Data Downloads" ; dcterms:description "Download directory for Pathway Commons PC v14 integrated pathway and molecular interaction datasets, including BioPAX, SIF, GMT, TXT, and JSON-LD products." ; schema1:url . kgr:pathwaycommons.gmt a schema1:Product ; rdfs:label "GMT Gene Set Format" ; dcterms:description "PC v14 Gene Matrix Transposed gene sets for pathway enrichment analysis, derived from the integrated Pathway Commons pathway archive." ; schema1:url . kgr:pathwaycommons.sif a schema1:Product ; rdfs:label "SIF Network Format" ; dcterms:description "PC v14 Simple Interaction Format network file representing binary pairwise molecular relationships integrated from Pathway Commons upstream datasource rows." ; schema1:url . kgr:pathwaycommons.txt a schema1:Product ; rdfs:label "Extended SIF TXT Format" ; dcterms:description "PC v14 tab-delimited extended SIF node and edge file using HGNC-oriented identifiers for integrated Pathway Commons interactions." ; schema1:url . kgr:pheknowlator.graph a schema1:GraphProduct ; rdfs:label "PheKnowLator graph" ; dcterms:description "PheKnowLator graph files, including subsets with and without inverse relations." ; schema1:url . kgr:dbnsfp.academic a schema1:Product ; rdfs:label "dbNSFP Academic Branch" ; dcterms:description "Academic branch of dbNSFP (v5.4a at time of curation, about 50 GB), a ZIP of gzipped, tab-delimited per-chromosome variant tables, the gene table, column descriptions and the search_dbNSFP Java program. Variant tables are also offered as a single tabix-indexed BGZF file per genome build (GRCh37, GRCh38) for Ensembl VEP and SnpSift. Includes all upstream scores that are free for academic use. Free for academic and non-commercial users after registration with an institutional email; download links are issued on request." ; schema1:url . kgr:dbnsfp.commercial a schema1:Product ; rdfs:label "dbNSFP Commercial Branch" ; dcterms:description "Commercial branch of dbNSFP (v5.4c at time of curation), in the same format as the academic branch but excluding CADD, VEST, M-CAP, MutScore, PolyPhen-2, PrimateAI and RGC Million Exome data, whose authors require separate commercial licenses. Available to subscribers under a paid license from Genos Bioinformatics." ; schema1:url . kgr:ebi a "Organization" ; rdfs:label "BioModels team, EMBL-EBI", "ChEMBL", "ChEMBL Team at EMBL-EBI", "EMBL-EBI", "EMBL-EBI PRIDE Team", "EMBL-EBI Samples, Phenotypes and Ontologies Team", "EMBL-EBI Samples, Phenotypes and Ontologies Team (SPOT)", "Ensembl Help Desk", "European Bioinformatics Institute (EMBL-EBI)", "European Variation Archive team, EMBL-EBI", "GOA Team at EMBL-EBI", "IntAct Team (EMBL-EBI)", "InterPro", "International Genome Sample Resource (EMBL-EBI)", "MetaboLights team, EMBL-EBI", "NHGRI-EBI GWAS Catalog Team", "RNAcentral Consortium (EMBL-EBI)", "Reactome", "Rfam Team at EMBL-EBI", "UniProt Consortium" . kgr:omicsdi.api a schema1:ProgrammingInterface ; rdfs:label "OmicsDI API" ; dcterms:description "Swagger-documented web service for programmatic querying of OmicsDI dataset metadata." ; schema1:url . kgr:omicsdi.portal a schema1:GraphicalInterface ; rdfs:label "OmicsDI Portal" ; dcterms:description "Web portal for searching and browsing integrated omics dataset metadata across repositories." ; schema1:url . kgr:translator.translator_kg.graph a schema1:GraphProduct ; rdfs:label "Translator Aggregate KGX Graph" ; dcterms:description "Aggregated KGX JSONL graph package combining 29 Translator release sources (release 2026_03_27; build 423af7989cac; Biolink 4.3.6; Node Normalizer 2025sep1)." ; schema1:url . kgr:molepro.api a schema1:ProgrammingInterface ; rdfs:label "MolePro API" ; dcterms:description "MolePro API providing access to the knowledge graph of chemical entities and biological targets" ; schema1:url . kgr:molepro.catalog a schema1:Product ; rdfs:label "MolePro Knowledge Sources Catalog" ; dcterms:description "Catalog of MolePro knowledge sources in JSON format" ; schema1:url . kgr:molepro.trapi a schema1:ProgrammingInterface ; rdfs:label "MolePro TRAPI Interface" ; dcterms:description "TRAPI-compliant interface for MolePro knowledge graph following the Translator Reasoner API standard" ; schema1:url . kgr:unibiomap.auxs a schema1:GraphProduct ; rdfs:label "UniBioMap Graph Auxiliaries" ; dcterms:description "Auxiliary UniBioMap graph annotations and metadata." ; schema1:url . kgr:unibiomap.links a schema1:GraphProduct ; rdfs:label "UniBioMap Graph Links" ; dcterms:description "Core UniBioMap graph edges file." ; schema1:url . kgr:unibiomap.pred a schema1:GraphProduct ; rdfs:label "UniBioMap Predicted Graph" ; dcterms:description "Predicted UniBioMap graph edges with confidence scores." ; schema1:url . kgr:unibiomap.pred.full a schema1:GraphProduct ; rdfs:label "UniBioMap Predicted Graph (Full)" ; dcterms:description "Full unfiltered UniBioMap predicted graph edges file." ; schema1:url . kgr:string.cog.links a schema1:GraphProduct ; rdfs:label "STRING COG Links" ; dcterms:description "association scores between orthologous groups" ; schema1:url . kgr:string.cog.links.detailed a schema1:GraphProduct ; rdfs:label "STRING COG Links Detailed" ; dcterms:description "association scores (incl. subscores per channel)" ; schema1:url . kgr:string.database a schema1:GraphProduct ; rdfs:label "STRING Database Network Schema" ; dcterms:description "full database, part II: the networks (nodes, edges, scores,...)" ; schema1:url . kgr:string.protein.links a schema1:GraphProduct ; rdfs:label "STRING Protein Links" ; dcterms:description "protein network data (full network, scored links between proteins)" ; schema1:url . kgr:string.protein.links.detailed a schema1:GraphProduct ; rdfs:label "STRING Protein Links Detailed" ; dcterms:description "protein network data (full network, incl. subscores per channel)" ; schema1:url . kgr:string.protein.links.full a schema1:GraphProduct ; rdfs:label "STRING Protein Links Full" ; dcterms:description "protein network data (full network, incl. distinction: direct vs. interologs)" ; schema1:url . kgr:string.protein.physical.links a schema1:GraphProduct ; rdfs:label "STRING Protein Physical Links" ; dcterms:description "protein network data (physical subnetwork, scored links between proteins)" ; schema1:url . kgr:string.protein.physical.links.detailed a schema1:GraphProduct ; rdfs:label "STRING Protein Physical Links Detailed" ; dcterms:description "protein network data (physical subnetwork, incl. subscores per channel)" ; schema1:url . kgr:string.protein.physical.links.full a schema1:GraphProduct ; rdfs:label "STRING Protein Physical Links Full" ; dcterms:description "protein network data (physical subnetwork, incl. distinction: direct vs. interologs)" ; schema1:url . kgr:cancer-genome-interpreter.clinicalkg.graph a schema1:GraphProduct ; rdfs:label "CKG Graph Dump" ; dcterms:description "Neo4j database dump of the Clinical Knowledge Graph and additional relationships" ; schema1:url . kgr:clinicalkg.graph a schema1:GraphProduct ; rdfs:label "CKG Graph Dump" ; dcterms:description "Neo4j database dump of the Clinical Knowledge Graph and additional relationships" ; schema1:url . kgr:molepro.graph.edges a schema1:GraphProduct ; rdfs:label "Edges for Molecular Data KP" ; dcterms:description "KGX edges for Molecular Data KP" ; schema1:url . kgr:molepro.graph.nodes a schema1:GraphProduct ; rdfs:label "Nodes for Molecular Data KP" ; dcterms:description "KGX nodes for Molecular Data KP" ; schema1:url . kgr:spoke.graph a schema1:GraphProduct ; rdfs:label "SPOKE Graph" ; dcterms:description "The SPOKE knowledge graph containing nodes and edges from multiple biomedical data sources." ; schema1:url . kgr:spoke-okn.graph a schema1:GraphProduct ; rdfs:label "SPOKE-OKN Graph" ; dcterms:description "The SPOKE-OKN knowledge graph, an OKN-hosted RDF publication of the SPOKE biomedical and environmental health knowledge graph, served through FRINK query services." ; schema1:url . kgr:bioteque.embeddings a schema1:Product ; rdfs:label "Bioteque Embeddings" ; dcterms:description "Network embeddings of the Bioteque graph that represent biological entities and their associations" ; schema1:url . kgr:efo.obo a schema1:OntologyProduct ; rdfs:label "EFO OBO" ; dcterms:description "The latest release of EFO in OBO format" ; schema1:url . kgr:efo.owl a schema1:OntologyProduct ; rdfs:label "EFO OWL" ; dcterms:description "The latest release of EFO in OWL format" ; schema1:url . kgr:harmonizome.downloads a schema1:Product ; rdfs:label "Harmonizome Downloads" ; dcterms:description "Harmonizome 3.0 processed dataset downloads, including dataset-specific association files and knowledge graph serialization downloads." ; schema1:url . kgr:harmonizome.kg-neo4j a schema1:GraphProduct ; rdfs:label "Harmonizome Knowledge Graph Neo4j Database" ; dcterms:description "Neo4j knowledge graph serialization of Harmonizome processed datasets, including genes, attributes, resources, datasets, and gene-attribute associations." ; schema1:url . kgr:rnacentral.api a schema1:ProgrammingInterface ; rdfs:label "RNAcentral REST API" ; dcterms:description "REST API for programmatic access to RNAcentral data" ; schema1:url . kgr:rnacentral.ftp a schema1:Product ; rdfs:label "RNAcentral FTP Archive" ; dcterms:description "FTP archive with current and archived release files (sequences and annotations)" ; schema1:url . kgr:rnacentral.portal a schema1:GraphicalInterface ; rdfs:label "RNAcentral Portal" ; dcterms:description "Web portal for searching and browsing ncRNA sequences, structures, and annotations" ; schema1:url . kgr:rnacentral.public-db a schema1:DataModelProduct ; rdfs:label "RNAcentral Public Postgres Database" ; dcterms:description "Public PostgreSQL database for direct SQL access to RNAcentral data" ; schema1:url . kgr:babel.compendia a schema1:Product ; rdfs:label "Babel Compendia" ; dcterms:description "Babel compendia, one file per Biolink type (for example Gene, Protein, Disease, ChemicalEntity, SmallMolecule, AnatomicalEntity). Each line is a JSON object for one clique, listing its identifiers with labels, descriptions and taxa, plus the preferred name and information content. Files carry a .txt extension; the Gene and Protein files (about 17.8 GB and 46.7 GB) are also split into parts." ; schema1:url . kgr:pharmebinet.graphml a schema1:GraphProduct ; rdfs:label "PharMeBINet GraphML Release" ; dcterms:description "PharMeBINet V2 GraphML release published on February 6, 2024." ; schema1:url . kgr:pharmebinet.json a schema1:GraphProduct ; rdfs:label "PharMeBINet JSON Release" ; dcterms:description "PharMeBINet V2 JSON release published on February 6, 2024." ; schema1:url . kgr:pharmebinet.neo4j a schema1:GraphProduct ; rdfs:label "PharMeBINet Neo4j Database" ; dcterms:description "PharMeBINet V2 Neo4j database release published on February 6, 2024." ; schema1:url . kgr:pharmebinet.neo4j.dump a schema1:GraphProduct ; rdfs:label "PharMeBINet Neo4j Dump" ; dcterms:description "PharMeBINet V2 Neo4j dump release published on February 6, 2024." ; schema1:url . kgr:pharmebinet.tsv a schema1:GraphProduct ; rdfs:label "PharMeBINet TSV Release" ; dcterms:description "PharMeBINet V2 TSV release published on February 6, 2024." ; schema1:url . kgr:ubkg.csv a schema1:GraphProduct ; rdfs:label "UBKG Ontology CSV Files" ; dcterms:description "Ontology CSV files that can be imported into a neo4j instance to create a UBKG database. Requires UMLS API key to access." ; schema1:url . kgr:ubkg.neo4j a schema1:GraphProduct ; rdfs:label "UBKG Neo4j Docker Distribution" ; dcterms:description "Turnkey neo4j distributions that deploy fully-indexed, standalone UBKG instances as neo4j graph databases, running in a Docker container. Requires UMLS API key to access." ; schema1:url . kgr:service-kp.trapi a schema1:ProgrammingInterface ; rdfs:label "Service Provider TRAPI" ; dcterms:description "TRAPI endpoint for the Service Provider team, served by BioThings Explorer, querying the BioThings and other APIs registered to the team in SmartAPI." ; schema1:url . kgr:biobtree.api a schema1:ProgrammingInterface ; rdfs:label "BioBTree REST API" ; dcterms:description "REST API for searching identifiers and special keywords, mapping between data sources with a chain-query syntax, and retrieving entries across the integrated BioBTree databases." ; schema1:url . kgr:biobtree.graph.human-subgraph a schema1:GraphProduct ; rdfs:label "BioBTree Knowledge Graph - Human Subgraph (KGX)" ; dcterms:description "Human-scoped, Neo4j-ready subgraph of the BioBTree knowledge graph, exported as a biolink-typed KGX graph (~40M nodes / ~132M edges, ~8.3 GB compressed across separate node and edge files). A practical projection of the full graph for human-centric biomedical use. Published on Zenodo." ; schema1:url . kgr:sri-reference-kg.graph a schema1:GraphProduct ; rdfs:label "SRI-Reference KG (KGX distribution)" ; dcterms:description "KGX distribution of the SRI-Reference KG" ; schema1:url . kgr:genecards.web.interface a schema1:GraphicalInterface ; rdfs:label "GeneCards Web Interface" ; dcterms:description "Web-based interface for searching and browsing comprehensive gene-centric information integrating data from over 200 sources" ; schema1:url .