name: OBO Database Ingestion
description: A set of databases formalized in OBO, OWL, and OBO Graph JSON formats, as well as mappings and nodelists.
contacts: [{"category": "Individual", "contact_details": [{"contact_type": "email", "value": "cthoyt@gmail.com"}, {"contact_type": "github", "value": "cthoyt"}], "label": "Charles Tapley Hoyt", "orcid": "0000-0003-4423-4370"}]
products: [{"category": "Product", "description": "bigg.compartment OBO", "format": "obo", "id": "obo-db-ingest.bigg.compartment.obo", "license": {"id": "http://bigg.ucsd.edu/license#license", "label": "Custom"}, "name": "bigg.compartment OBO", "original_source": ["bigg"], "product_file_size": 1055, "product_url": "https://w3id.org/biopragmatics/resources/bigg.compartment/bigg.compartment.obo", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "bigg.compartment OWL", "format": "owl", "id": "obo-db-ingest.bigg.compartment.owl", "license": {"id": "http://bigg.ucsd.edu/license#license", "label": "Custom"}, "name": "bigg.compartment OWL", "original_source": ["bigg"], "product_file_size": 1477, "product_url": "https://w3id.org/biopragmatics/resources/bigg.compartment/bigg.compartment.owl", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "bigg.compartment OBO Graph JSON", "format": "json", "id": "obo-db-ingest.bigg.compartment.json", "license": {"id": "http://bigg.ucsd.edu/license#license", "label": "Custom"}, "name": "bigg.compartment OBO Graph JSON", "original_source": ["bigg"], "product_file_size": 1114, "product_url": "https://w3id.org/biopragmatics/resources/bigg.compartment/bigg.compartment.json", "secondary_source": ["obo-db-ingest"]}, {"category": "MappingProduct", "description": "bigg.compartment SSSOM", "format": "sssom", "id": "obo-db-ingest.bigg.compartment.sssom.tsv", "license": {"id": "http://bigg.ucsd.edu/license#license", "label": "Custom"}, "name": "bigg.compartment SSSOM", "original_source": ["bigg", "go"], "product_file_size": 242, "product_url": "https://w3id.org/biopragmatics/resources/bigg.compartment/bigg.compartment.sssom.tsv", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "bigg.metabolite OBO", "format": "obo", "id": "obo-db-ingest.bigg.metabolite.obo", "license": {"id": "http://bigg.ucsd.edu/license#license", "label": "Custom"}, "name": "bigg.metabolite OBO", "original_source": ["bigg"], "product_file_size": 588366, "product_url": "https://w3id.org/biopragmatics/resources/bigg.metabolite/bigg.metabolite.obo", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "bigg.metabolite OWL", "format": "owl", "id": "obo-db-ingest.bigg.metabolite.owl", "license": {"id": "http://bigg.ucsd.edu/license#license", "label": "Custom"}, "name": "bigg.metabolite OWL", "original_source": ["bigg"], "product_file_size": 757896, "product_url": "https://w3id.org/biopragmatics/resources/bigg.metabolite/bigg.metabolite.owl", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "bigg.metabolite OBO Graph JSON", "format": "json", "id": "obo-db-ingest.bigg.metabolite.json", "license": {"id": "http://bigg.ucsd.edu/license#license", "label": "Custom"}, "name": "bigg.metabolite OBO Graph JSON", "original_source": ["bigg"], "product_file_size": 1025217, "product_url": "https://w3id.org/biopragmatics/resources/bigg.metabolite/bigg.metabolite.json", "secondary_source": ["obo-db-ingest"]}, {"category": "MappingProduct", "description": "bigg.metabolite SSSOM", "format": "sssom", "id": "obo-db-ingest.bigg.metabolite.sssom.tsv", "license": {"id": "http://bigg.ucsd.edu/license#license", "label": "Custom"}, "name": "bigg.metabolite SSSOM", "original_source": ["chebi", "bigg", "biocyc", "kegg", "reactome"], "product_file_size": 400516, "product_url": "https://w3id.org/biopragmatics/resources/bigg.metabolite/bigg.metabolite.sssom.tsv", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "bigg.model OBO", "format": "obo", "id": "obo-db-ingest.bigg.model.obo", "license": {"id": "http://bigg.ucsd.edu/license#license", "label": "Custom"}, "name": "bigg.model OBO", "original_source": ["bigg"], "product_file_size": 2782, "product_url": "https://w3id.org/biopragmatics/resources/bigg.model/bigg.model.obo", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "bigg.model OWL", "format": "owl", "id": "obo-db-ingest.bigg.model.owl", "license": {"id": "http://bigg.ucsd.edu/license#license", "label": "Custom"}, "name": "bigg.model OWL", "original_source": ["bigg"], "product_file_size": 3714, "product_url": "https://w3id.org/biopragmatics/resources/bigg.model/bigg.model.owl", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "bigg.model OBO Graph JSON", "format": "json", "id": "obo-db-ingest.bigg.model.json", "license": {"id": "http://bigg.ucsd.edu/license#license", "label": "Custom"}, "name": "bigg.model OBO Graph JSON", "original_source": ["bigg"], "product_file_size": 2508, "product_url": "https://w3id.org/biopragmatics/resources/bigg.model/bigg.model.json", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "bigg.reaction OBO", "format": "obo", "id": "obo-db-ingest.bigg.reaction.obo", "license": {"id": "http://bigg.ucsd.edu/license#license", "label": "Custom"}, "name": "bigg.reaction OBO", "original_source": ["bigg"], "product_file_size": 1195491, "product_url": "https://w3id.org/biopragmatics/resources/bigg.reaction/bigg.reaction.obo", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "bigg.reaction OWL", "format": "owl", "id": "obo-db-ingest.bigg.reaction.owl", "license": {"id": "http://bigg.ucsd.edu/license#license", "label": "Custom"}, "name": "bigg.reaction OWL", "original_source": ["bigg"], "product_file_size": 1806640, "product_url": "https://w3id.org/biopragmatics/resources/bigg.reaction/bigg.reaction.owl", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "bigg.reaction OBO Graph JSON", "format": "json", "id": "obo-db-ingest.bigg.reaction.json", "license": {"id": "http://bigg.ucsd.edu/license#license", "label": "Custom"}, "name": "bigg.reaction OBO Graph JSON", "original_source": ["bigg"], "product_file_size": 2340334, "product_url": "https://w3id.org/biopragmatics/resources/bigg.reaction/bigg.reaction.json", "secondary_source": ["obo-db-ingest"]}, {"category": "MappingProduct", "description": "bigg.reaction SSSOM", "format": "sssom", "id": "obo-db-ingest.bigg.reaction.sssom.tsv", "license": {"id": "http://bigg.ucsd.edu/license#license", "label": "Custom"}, "name": "bigg.reaction SSSOM", "original_source": ["bigg"], "product_file_size": 462968, "product_url": "https://w3id.org/biopragmatics/resources/bigg.reaction/bigg.reaction.sssom.tsv", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "ccle OBO", "format": "obo", "id": "obo-db-ingest.ccle.obo", "license": {"id": "https://opendatacommons.org/licenses/odbl/1-0/", "label": "ODbL-1.0"}, "name": "ccle OBO", "original_source": ["ccle"], "product_file_size": 19324, "product_url": "https://w3id.org/biopragmatics/resources/ccle/ccle.obo", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "ccle OWL", "format": "owl", "id": "obo-db-ingest.ccle.owl", "license": {"id": "https://opendatacommons.org/licenses/odbl/1-0/", "label": "ODbL-1.0"}, "name": "ccle OWL", "original_source": ["ccle"], "product_file_size": 29770, "product_url": "https://w3id.org/biopragmatics/resources/ccle/ccle.owl", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "ccle OBO Graph JSON", "format": "json", "id": "obo-db-ingest.ccle.json", "license": {"id": "https://opendatacommons.org/licenses/odbl/1-0/", "label": "ODbL-1.0"}, "name": "ccle OBO Graph JSON", "original_source": ["ccle"], "product_file_size": 23282, "product_url": "https://w3id.org/biopragmatics/resources/ccle/ccle.json", "secondary_source": ["obo-db-ingest"]}, {"category": "MappingProduct", "description": "ccle SSSOM", "format": "sssom", "id": "obo-db-ingest.ccle.sssom.tsv", "license": {"id": "https://opendatacommons.org/licenses/odbl/1-0/", "label": "ODbL-1.0"}, "name": "ccle SSSOM", "original_source": ["ccle"], "product_file_size": 14414, "product_url": "https://w3id.org/biopragmatics/resources/ccle/ccle.sssom.tsv", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "cgnc OBO", "format": "obo", "id": "obo-db-ingest.cgnc.obo", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "cgnc OBO", "original_source": ["cgnc"], "product_file_size": 683991, "product_url": "https://w3id.org/biopragmatics/resources/cgnc/cgnc.obo", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "cgnc OWL", "format": "owl", "id": "obo-db-ingest.cgnc.owl", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "cgnc OWL", "original_source": ["cgnc"], "product_file_size": 911421, "product_url": "https://w3id.org/biopragmatics/resources/cgnc/cgnc.owl", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "cgnc OBO Graph JSON", "format": "json", "id": "obo-db-ingest.cgnc.json", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "cgnc OBO Graph JSON", "original_source": ["cgnc"], "product_file_size": 861880, "product_url": "https://w3id.org/biopragmatics/resources/cgnc/cgnc.json", "secondary_source": ["obo-db-ingest"]}, {"category": "MappingProduct", "description": "cgnc SSSOM", "format": "sssom", "id": "obo-db-ingest.cgnc.sssom.tsv", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "cgnc SSSOM", "original_source": ["cgnc"], "product_file_size": 258292, "product_url": "https://w3id.org/biopragmatics/resources/cgnc/cgnc.sssom.tsv", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "chembl.compound OBO", "format": "obo", "id": "obo-db-ingest.chembl.compound.obo", "license": {"id": "https://creativecommons.org/licenses/by-sa/3.0/", "label": "CC-BY-SA-3.0"}, "name": "chembl.compound OBO", "product_file_size": 5380016, "product_url": "https://w3id.org/biopragmatics/resources/chembl.compound/chembl.compound.obo"}, {"category": "Product", "description": "chembl.compound OWL", "format": "owl", "id": "obo-db-ingest.chembl.compound.owl", "license": {"id": "https://creativecommons.org/licenses/by-sa/3.0/", "label": "CC-BY-SA-3.0"}, "name": "chembl.compound OWL", "product_file_size": 5800822, "product_url": "https://w3id.org/biopragmatics/resources/chembl.compound/chembl.compound.owl"}, {"category": "Product", "description": "chembl.compound OBO Graph JSON", "format": "json", "id": "obo-db-ingest.chembl.compound.json", "license": {"id": "https://creativecommons.org/licenses/by-sa/3.0/", "label": "CC-BY-SA-3.0"}, "name": "chembl.compound OBO Graph JSON", "product_file_size": 5732141, "product_url": "https://w3id.org/biopragmatics/resources/chembl.compound/chembl.compound.json"}, {"category": "MappingProduct", "description": "chembl.compound SSSOM", "format": "sssom", "id": "obo-db-ingest.chembl.compound.sssom.tsv", "license": {"id": "https://creativecommons.org/licenses/by-sa/3.0/", "label": "CC-BY-SA-3.0"}, "name": "chembl.compound SSSOM", "product_file_size": 767775, "product_url": "https://w3id.org/biopragmatics/resources/chembl.compound/chembl.compound.sssom.tsv"}, {"category": "Product", "description": "chembl.target OBO", "format": "obo", "id": "obo-db-ingest.chembl.target.obo", "license": {"id": "https://creativecommons.org/licenses/by-sa/3.0/", "label": "CC-BY-SA-3.0"}, "name": "chembl.target OBO", "product_file_size": 387199, "product_url": "https://w3id.org/biopragmatics/resources/chembl.target/chembl.target.obo"}, {"category": "Product", "description": "chembl.target OWL", "format": "owl", "id": "obo-db-ingest.chembl.target.owl", "license": {"id": "https://creativecommons.org/licenses/by-sa/3.0/", "label": "CC-BY-SA-3.0"}, "name": "chembl.target OWL", "product_file_size": 546755, "product_url": "https://w3id.org/biopragmatics/resources/chembl.target/chembl.target.owl"}, {"category": "Product", "description": "chembl.target OBO Graph JSON", "format": "json", "id": "obo-db-ingest.chembl.target.json", "license": {"id": "https://creativecommons.org/licenses/by-sa/3.0/", "label": "CC-BY-SA-3.0"}, "name": "chembl.target OBO Graph JSON", "product_file_size": 495605, "product_url": "https://w3id.org/biopragmatics/resources/chembl.target/chembl.target.json"}, {"category": "MappingProduct", "description": "chembl.target SSSOM", "format": "sssom", "id": "obo-db-ingest.chembl.target.sssom.tsv", "license": {"id": "https://creativecommons.org/licenses/by-sa/3.0/", "label": "CC-BY-SA-3.0"}, "name": "chembl.target SSSOM", "product_file_size": 72721, "product_url": "https://w3id.org/biopragmatics/resources/chembl.target/chembl.target.sssom.tsv"}, {"category": "Product", "description": "civic.gid OBO", "format": "obo", "id": "obo-db-ingest.civic.gid.obo", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "civic.gid OBO", "product_file_size": 45668, "product_url": "https://w3id.org/biopragmatics/resources/civic.gid/civic.gid.obo"}, {"category": "Product", "description": "civic.gid OWL", "format": "owl", "id": "obo-db-ingest.civic.gid.owl", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "civic.gid OWL", "product_file_size": 58831, "product_url": "https://w3id.org/biopragmatics/resources/civic.gid/civic.gid.owl"}, {"category": "Product", "description": "civic.gid OBO Graph JSON", "format": "json", "id": "obo-db-ingest.civic.gid.json", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "civic.gid OBO Graph JSON", "product_file_size": 55758, "product_url": "https://w3id.org/biopragmatics/resources/civic.gid/civic.gid.json"}, {"category": "MappingProduct", "description": "civic.gid SSSOM", "format": "sssom", "id": "obo-db-ingest.civic.gid.sssom.tsv", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "civic.gid SSSOM", "product_file_size": 3977, "product_url": "https://w3id.org/biopragmatics/resources/civic.gid/civic.gid.sssom.tsv"}, {"category": "Product", "description": "clinicaltrials OBO", "format": "obo", "id": "obo-db-ingest.clinicaltrials.obo", "license": {"id": "https://clinicaltrials.gov/about-site/terms-conditions#availability", "label": "Custom"}, "name": "clinicaltrials OBO", "product_url": "https://w3id.org/biopragmatics/resources/clinicaltrials/clinicaltrials.obo", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-09_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/clinicaltrials/clinicaltrials.obo (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f4fb79b61b0>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "clinicaltrials OWL", "format": "owl", "id": "obo-db-ingest.clinicaltrials.owl", "license": {"id": "https://clinicaltrials.gov/about-site/terms-conditions#availability", "label": "Custom"}, "name": "clinicaltrials OWL", "product_url": "https://w3id.org/biopragmatics/resources/clinicaltrials/clinicaltrials.owl", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-09_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/clinicaltrials/clinicaltrials.owl (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f4fb79b6ba0>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "clinicaltrials OBO Graph JSON", "format": "json", "id": "obo-db-ingest.clinicaltrials.json", "license": {"id": "https://clinicaltrials.gov/about-site/terms-conditions#availability", "label": "Custom"}, "name": "clinicaltrials OBO Graph JSON", "product_url": "https://w3id.org/biopragmatics/resources/clinicaltrials/clinicaltrials.json", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-09_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/clinicaltrials/clinicaltrials.json (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f4fb79b72f0>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "MappingProduct", "description": "clinicaltrials SSSOM", "format": "sssom", "id": "obo-db-ingest.clinicaltrials.sssom.tsv", "license": {"id": "https://clinicaltrials.gov/about-site/terms-conditions#availability", "label": "Custom"}, "name": "clinicaltrials SSSOM", "product_file_size": 6299996, "product_url": "https://w3id.org/biopragmatics/resources/clinicaltrials/clinicaltrials.sssom.tsv"}, {"category": "Product", "description": "complexportal OBO", "format": "obo", "id": "obo-db-ingest.complexportal.obo", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "complexportal OBO", "product_file_size": 921494, "product_url": "https://w3id.org/biopragmatics/resources/complexportal/complexportal.obo"}, {"category": "Product", "description": "complexportal OWL", "format": "owl", "id": "obo-db-ingest.complexportal.owl", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "complexportal OWL", "product_file_size": 1099541, "product_url": "https://w3id.org/biopragmatics/resources/complexportal/complexportal.owl"}, {"category": "Product", "description": "complexportal OBO Graph JSON", "format": "json", "id": "obo-db-ingest.complexportal.json", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "complexportal OBO Graph JSON", "product_file_size": 1096476, "product_url": "https://w3id.org/biopragmatics/resources/complexportal/complexportal.json"}, {"category": "MappingProduct", "description": "complexportal SSSOM", "format": "sssom", "id": "obo-db-ingest.complexportal.sssom.tsv", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "complexportal SSSOM", "product_file_size": 58537, "product_url": "https://w3id.org/biopragmatics/resources/complexportal/complexportal.sssom.tsv"}, {"category": "Product", "description": "cpt OBO", "format": "obo", "id": "obo-db-ingest.cpt.obo", "name": "cpt OBO", "product_file_size": 6117, "product_url": "https://w3id.org/biopragmatics/resources/cpt/cpt.obo"}, {"category": "Product", "description": "cpt OWL", "format": "owl", "id": "obo-db-ingest.cpt.owl", "name": "cpt OWL", "product_file_size": 7552, "product_url": "https://w3id.org/biopragmatics/resources/cpt/cpt.owl"}, {"category": "Product", "description": "cpt OBO Graph JSON", "format": "json", "id": "obo-db-ingest.cpt.json", "name": "cpt OBO Graph JSON", "product_file_size": 6848, "product_url": "https://w3id.org/biopragmatics/resources/cpt/cpt.json"}, {"category": "MappingProduct", "description": "cpt SSSOM", "format": "sssom", "id": "obo-db-ingest.cpt.sssom.tsv", "name": "cpt SSSOM", "product_file_size": 977, "product_url": "https://w3id.org/biopragmatics/resources/cpt/cpt.sssom.tsv"}, {"category": "Product", "description": "credit OBO", "format": "obo", "id": "obo-db-ingest.credit.obo", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "credit OBO", "product_file_size": 1421, "product_url": "https://w3id.org/biopragmatics/resources/credit/credit.obo"}, 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"https://w3id.org/biopragmatics/resources/kegg.genome/kegg.genome.json"}, {"category": "Product", "description": "mesh OBO", "format": "obo", "id": "obo-db-ingest.mesh.obo", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "mesh OBO", "product_file_size": 13534704, "product_url": "https://w3id.org/biopragmatics/resources/mesh/mesh.obo"}, {"category": "Product", "description": "mesh OWL", "format": "owl", "id": "obo-db-ingest.mesh.owl", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "mesh OWL", "product_url": "https://w3id.org/biopragmatics/resources/mesh/mesh.owl", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "mesh OBO Graph JSON", "format": "json", "id": "obo-db-ingest.mesh.json", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "mesh OBO Graph JSON", "product_url": "https://w3id.org/biopragmatics/resources/mesh/mesh.json", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/mesh/mesh.json (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fa35c763470>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-09_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/mesh/mesh.json (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f4fb79e8fb0>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "mgi OBO", "format": "obo", "id": "obo-db-ingest.mgi.obo", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "mgi OBO", "product_url": "https://w3id.org/biopragmatics/resources/mgi/mgi.obo", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/mgi/mgi.obo (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f28e3289a20>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "mgi OWL", "format": "owl", "id": "obo-db-ingest.mgi.owl", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "mgi OWL", "product_url": "https://w3id.org/biopragmatics/resources/mgi/mgi.owl", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "mgi OBO Graph JSON", "format": "json", "id": "obo-db-ingest.mgi.json", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "mgi OBO Graph JSON", "product_url": "https://w3id.org/biopragmatics/resources/mgi/mgi.json", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/mgi/mgi.json (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fa35c761850>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/mgi/mgi.json (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f28e32a8190>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-09_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "MappingProduct", "description": "mgi SSSOM", "format": "sssom", "id": "obo-db-ingest.mgi.sssom.tsv", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "mgi 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"name": "mirbase OBO Graph JSON", "product_file_size": 825009, "product_url": "https://w3id.org/biopragmatics/resources/mirbase/mirbase.json"}, {"category": "MappingProduct", "description": "mirbase SSSOM", "format": "sssom", "id": "obo-db-ingest.mirbase.sssom.tsv", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "mirbase SSSOM", "product_file_size": 53837, "product_url": "https://w3id.org/biopragmatics/resources/mirbase/mirbase.sssom.tsv"}, {"category": "Product", "description": "mirbase.family OBO", "format": "obo", "id": "obo-db-ingest.mirbase.family.obo", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "mirbase.family OBO", "product_file_size": 175105, "product_url": "https://w3id.org/biopragmatics/resources/mirbase.family/mirbase.family.obo"}, {"category": "Product", "description": "mirbase.family OWL", "format": "owl", "id": "obo-db-ingest.mirbase.family.owl", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "mirbase.family OWL", "product_file_size": 248775, "product_url": "https://w3id.org/biopragmatics/resources/mirbase.family/mirbase.family.owl"}, {"category": "Product", "description": "mirbase.family OBO Graph JSON", "format": "json", "id": "obo-db-ingest.mirbase.family.json", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "mirbase.family OBO Graph JSON", "product_file_size": 113961, "product_url": "https://w3id.org/biopragmatics/resources/mirbase.family/mirbase.family.json"}, {"category": "Product", "description": "mirbase.mature OBO", "format": "obo", "id": "obo-db-ingest.mirbase.mature.obo", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "mirbase.mature OBO", "product_file_size": 329057, "product_url": "https://w3id.org/biopragmatics/resources/mirbase.mature/mirbase.mature.obo"}, {"category": "Product", "description": "mirbase.mature OWL", "format": "owl", "id": "obo-db-ingest.mirbase.mature.owl", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "mirbase.mature OWL", "product_file_size": 549748, "product_url": "https://w3id.org/biopragmatics/resources/mirbase.mature/mirbase.mature.owl"}, {"category": "Product", "description": "mirbase.mature OBO Graph JSON", "format": "json", "id": "obo-db-ingest.mirbase.mature.json", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "mirbase.mature OBO Graph JSON", "product_file_size": 373573, "product_url": "https://w3id.org/biopragmatics/resources/mirbase.mature/mirbase.mature.json"}, {"category": "MappingProduct", "description": "mirbase.mature SSSOM", "format": "sssom", "id": "obo-db-ingest.mirbase.mature.sssom.tsv", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "mirbase.mature SSSOM", "product_file_size": 64, "product_url": "https://w3id.org/biopragmatics/resources/mirbase.mature/mirbase.mature.sssom.tsv"}, {"category": "Product", "description": "msigdb OBO", "format": "obo", "id": "obo-db-ingest.msigdb.obo", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "msigdb OBO", "product_url": "https://w3id.org/biopragmatics/resources/msigdb/msigdb.obo", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/msigdb/msigdb.obo (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fa35c761820>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "msigdb OWL", "format": "owl", "id": "obo-db-ingest.msigdb.owl", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "msigdb OWL", "product_url": "https://w3id.org/biopragmatics/resources/msigdb/msigdb.owl", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "msigdb OBO Graph JSON", "format": "json", "id": "obo-db-ingest.msigdb.json", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "msigdb OBO Graph JSON", "product_url": "https://w3id.org/biopragmatics/resources/msigdb/msigdb.json", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-09_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/msigdb/msigdb.json (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7ff2449ab670>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "MappingProduct", "description": "msigdb SSSOM", "format": "sssom", "id": "obo-db-ingest.msigdb.sssom.tsv", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "msigdb SSSOM", "product_file_size": 92467, "product_url": "https://w3id.org/biopragmatics/resources/msigdb/msigdb.sssom.tsv"}, {"category": "Product", "description": "ncbi.gc OBO", "format": "obo", "id": "obo-db-ingest.ncbi.gc.obo", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "ncbi.gc OBO", "product_file_size": 1425, "product_url": "https://w3id.org/biopragmatics/resources/ncbi.gc/ncbi.gc.obo"}, {"category": "Product", "description": "ncbi.gc OWL", "format": "owl", "id": "obo-db-ingest.ncbi.gc.owl", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "ncbi.gc OWL", "product_file_size": 2223, "product_url": "https://w3id.org/biopragmatics/resources/ncbi.gc/ncbi.gc.owl"}, {"category": "Product", "description": "ncbi.gc OBO Graph JSON", "format": "json", "id": "obo-db-ingest.ncbi.gc.json", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "ncbi.gc OBO Graph JSON", "product_file_size": 1886, "product_url": "https://w3id.org/biopragmatics/resources/ncbi.gc/ncbi.gc.json"}, {"category": "MappingProduct", "description": "ncbi.gc SSSOM", "format": "sssom", "id": "obo-db-ingest.ncbi.gc.sssom.tsv", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "ncbi.gc SSSOM", "product_file_size": 191, "product_url": "https://w3id.org/biopragmatics/resources/ncbi.gc/ncbi.gc.sssom.tsv"}, {"category": "Product", "description": "nihreporter.project OBO", "format": "obo", "id": "obo-db-ingest.nihreporter.project.obo", "name": "nihreporter.project OBO", "product_url": "https://w3id.org/biopragmatics/resources/nihreporter.project/nihreporter.project.obo", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/nihreporter.project/nihreporter.project.obo (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f28e32a9990>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "nihreporter.project OWL", "format": "owl", "id": "obo-db-ingest.nihreporter.project.owl", "name": "nihreporter.project OWL", "product_url": "https://w3id.org/biopragmatics/resources/nihreporter.project/nihreporter.project.owl", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "nihreporter.project OBO Graph JSON", "format": "json", "id": "obo-db-ingest.nihreporter.project.json", "name": "nihreporter.project OBO Graph JSON", "product_url": "https://w3id.org/biopragmatics/resources/nihreporter.project/nihreporter.project.json", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/nihreporter.project/nihreporter.project.json (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fa35c762b10>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "nlm OBO", "format": "obo", "id": "obo-db-ingest.nlm.obo", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "nlm OBO", "product_file_size": 2007193, "product_url": "https://w3id.org/biopragmatics/resources/nlm/nlm.obo"}, {"category": "Product", "description": "nlm OWL", "format": "owl", "id": "obo-db-ingest.nlm.owl", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "nlm OWL", "product_file_size": 2471988, "product_url": "https://w3id.org/biopragmatics/resources/nlm/nlm.owl"}, {"category": "Product", "description": "nlm OBO Graph JSON", "format": "json", "id": "obo-db-ingest.nlm.json", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "nlm OBO Graph JSON", "product_file_size": 2497051, "product_url": "https://w3id.org/biopragmatics/resources/nlm/nlm.json"}, {"category": "MappingProduct", "description": "nlm SSSOM", "format": "sssom", "id": "obo-db-ingest.nlm.sssom.tsv", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "nlm SSSOM", "product_file_size": 422890, "product_url": "https://w3id.org/biopragmatics/resources/nlm/nlm.sssom.tsv"}, {"category": "Product", "description": "nlm.publisher OBO", "format": "obo", "id": "obo-db-ingest.nlm.publisher.obo", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "nlm.publisher OBO", "product_file_size": 9570, "product_url": "https://w3id.org/biopragmatics/resources/nlm.publisher/nlm.publisher.obo"}, {"category": "Product", "description": "nlm.publisher OWL", "format": "owl", "id": "obo-db-ingest.nlm.publisher.owl", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "nlm.publisher OWL", "product_file_size": 12531, "product_url": "https://w3id.org/biopragmatics/resources/nlm.publisher/nlm.publisher.owl"}, {"category": "Product", "description": "nlm.publisher OBO Graph JSON", "format": "json", "id": "obo-db-ingest.nlm.publisher.json", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "nlm.publisher OBO Graph JSON", "product_file_size": 12675, "product_url": "https://w3id.org/biopragmatics/resources/nlm.publisher/nlm.publisher.json"}, {"category": "Product", "description": "npass OBO", "format": "obo", "id": "obo-db-ingest.npass.obo", "license": {"id": "https://creativecommons.org/licenses/by-nc/4.0/", "label": "CC-BY-NC"}, "name": "npass OBO", "product_file_size": 3336518, "product_url": "https://w3id.org/biopragmatics/resources/npass/npass.obo"}, {"category": "Product", "description": "npass OWL", "format": "owl", "id": "obo-db-ingest.npass.owl", "license": {"id": "https://creativecommons.org/licenses/by-nc/4.0/", "label": "CC-BY-NC"}, "name": "npass OWL", "product_file_size": 4085393, "product_url": "https://w3id.org/biopragmatics/resources/npass/npass.owl"}, {"category": "Product", "description": "npass OBO Graph JSON", "format": "json", "id": "obo-db-ingest.npass.json", "license": {"id": "https://creativecommons.org/licenses/by-nc/4.0/", "label": "CC-BY-NC"}, "name": "npass OBO Graph JSON", "product_file_size": 3814506, "product_url": "https://w3id.org/biopragmatics/resources/npass/npass.json"}, {"category": "MappingProduct", "description": "npass SSSOM", "format": "sssom", "id": "obo-db-ingest.npass.sssom.tsv", "license": {"id": "https://creativecommons.org/licenses/by-nc/4.0/", "label": "CC-BY-NC"}, "name": "npass SSSOM", "product_file_size": 833693, "product_url": "https://w3id.org/biopragmatics/resources/npass/npass.sssom.tsv"}, {"category": "Product", "description": "omim.ps OBO", "format": "obo", "id": "obo-db-ingest.omim.ps.obo", "license": {"id": "https://www.omim.org/help/agreement", "label": "Custom"}, "name": "omim.ps OBO", "product_file_size": 10241, "product_url": "https://w3id.org/biopragmatics/resources/omim.ps/omim.ps.obo"}, {"category": "Product", "description": "omim.ps OWL", "format": "owl", "id": "obo-db-ingest.omim.ps.owl", "license": {"id": "https://www.omim.org/help/agreement", "label": "Custom"}, "name": "omim.ps OWL", "product_file_size": 13894, "product_url": "https://w3id.org/biopragmatics/resources/omim.ps/omim.ps.owl"}, {"category": "Product", "description": "omim.ps OBO Graph JSON", "format": "json", "id": "obo-db-ingest.omim.ps.json", "license": {"id": "https://www.omim.org/help/agreement", "label": "Custom"}, "name": "omim.ps OBO Graph JSON", "product_file_size": 11140, "product_url": "https://w3id.org/biopragmatics/resources/omim.ps/omim.ps.json"}, {"category": "Product", "description": "pathbank OBO", "format": "obo", "id": "obo-db-ingest.pathbank.obo", "license": {"id": "https://opendatacommons.org/licenses/odbl/1-0/", "label": "ODbL-1.0"}, "name": "pathbank OBO", "product_url": "https://w3id.org/biopragmatics/resources/pathbank/pathbank.obo", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/pathbank/pathbank.obo (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f28e3289ba0>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-09_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/pathbank/pathbank.obo (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f4fb79e8440>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "pathbank OWL", "format": "owl", "id": "obo-db-ingest.pathbank.owl", "license": {"id": "https://opendatacommons.org/licenses/odbl/1-0/", "label": "ODbL-1.0"}, "name": "pathbank OWL", "product_url": "https://w3id.org/biopragmatics/resources/pathbank/pathbank.owl", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "pathbank OBO Graph JSON", "format": "json", "id": "obo-db-ingest.pathbank.json", "license": {"id": "https://opendatacommons.org/licenses/odbl/1-0/", "label": "ODbL-1.0"}, "name": "pathbank OBO Graph JSON", "product_url": "https://w3id.org/biopragmatics/resources/pathbank/pathbank.json", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "MappingProduct", "description": "pathbank SSSOM", "format": "sssom", "id": "obo-db-ingest.pathbank.sssom.tsv", "license": {"id": "https://opendatacommons.org/licenses/odbl/1-0/", "label": "ODbL-1.0"}, "name": "pathbank SSSOM", "product_file_size": 570276, "product_url": "https://w3id.org/biopragmatics/resources/pathbank/pathbank.sssom.tsv"}, {"category": "Product", "description": "pfam OBO", "format": "obo", "id": "obo-db-ingest.pfam.obo", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "pfam OBO", "product_file_size": 510198, "product_url": "https://w3id.org/biopragmatics/resources/pfam/pfam.obo"}, {"category": "Product", "description": "pfam OWL", "format": "owl", "id": "obo-db-ingest.pfam.owl", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "pfam OWL", "product_file_size": 656714, "product_url": "https://w3id.org/biopragmatics/resources/pfam/pfam.owl"}, {"category": "Product", "description": "pfam OBO Graph JSON", "format": "json", "id": "obo-db-ingest.pfam.json", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "pfam OBO Graph JSON", "product_file_size": 595575, "product_url": "https://w3id.org/biopragmatics/resources/pfam/pfam.json"}, {"category": "Product", "description": "pfam.clan OBO", "format": "obo", "id": "obo-db-ingest.pfam.clan.obo", "license": {"id": 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"obo-db-ingest.pharmgkb.disease.obo", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.disease OBO", "original_source": ["pharmgkb"], "product_file_size": 148487, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.disease/pharmgkb.disease.obo", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.disease OWL", "format": "owl", "id": "obo-db-ingest.pharmgkb.disease.owl", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.disease OWL", "original_source": ["pharmgkb"], "product_file_size": 178658, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.disease/pharmgkb.disease.owl", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.disease OBO Graph JSON", "format": "json", "id": "obo-db-ingest.pharmgkb.disease.json", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.disease OBO Graph JSON", "original_source": ["pharmgkb"], "product_file_size": 180080, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.disease/pharmgkb.disease.json", "secondary_source": ["obo-db-ingest"]}, {"category": "MappingProduct", "description": "pharmgkb.disease SSSOM", "format": "sssom", "id": "obo-db-ingest.pharmgkb.disease.sssom.tsv", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.disease SSSOM", "original_source": ["pharmgkb"], "product_file_size": 62271, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.disease/pharmgkb.disease.sssom.tsv", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.drug OBO", "format": "obo", "id": "obo-db-ingest.pharmgkb.drug.obo", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.drug OBO", "original_source": ["pharmgkb"], "product_file_size": 465956, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.drug/pharmgkb.drug.obo", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.drug OWL", "format": "owl", "id": "obo-db-ingest.pharmgkb.drug.owl", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.drug OWL", "original_source": ["pharmgkb"], "product_file_size": 531402, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.drug/pharmgkb.drug.owl", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.drug OBO Graph JSON", "format": "json", "id": "obo-db-ingest.pharmgkb.drug.json", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.drug OBO Graph JSON", "original_source": ["pharmgkb"], "product_file_size": 552557, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.drug/pharmgkb.drug.json", "secondary_source": ["obo-db-ingest"]}, {"category": "MappingProduct", "description": "pharmgkb.drug SSSOM", "format": "sssom", "id": "obo-db-ingest.pharmgkb.drug.sssom.tsv", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.drug SSSOM", "original_source": ["pharmgkb"], "product_file_size": 202221, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.drug/pharmgkb.drug.sssom.tsv", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.gene OBO", "format": "obo", "id": "obo-db-ingest.pharmgkb.gene.obo", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.gene OBO", "original_source": ["pharmgkb"], "product_file_size": 2137084, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.gene/pharmgkb.gene.obo", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.gene OWL", "format": "owl", "id": "obo-db-ingest.pharmgkb.gene.owl", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.gene OWL", "original_source": ["pharmgkb"], "product_file_size": 2542592, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.gene/pharmgkb.gene.owl", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.gene OBO Graph JSON", "format": "json", "id": "obo-db-ingest.pharmgkb.gene.json", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.gene OBO Graph JSON", "original_source": ["pharmgkb"], "product_file_size": 2668332, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.gene/pharmgkb.gene.json", "secondary_source": ["obo-db-ingest"]}, {"category": "MappingProduct", "description": "pharmgkb.gene SSSOM", "format": "sssom", "id": "obo-db-ingest.pharmgkb.gene.sssom.tsv", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.gene SSSOM", "original_source": ["pharmgkb"], "product_file_size": 1621905, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.gene/pharmgkb.gene.sssom.tsv", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.pathways OBO", "format": "obo", "id": "obo-db-ingest.pharmgkb.pathways.obo", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.pathways OBO", "original_source": ["pharmgkb"], "product_file_size": 2776, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.pathways/pharmgkb.pathways.obo", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.pathways OWL", "format": "owl", "id": "obo-db-ingest.pharmgkb.pathways.owl", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.pathways OWL", "original_source": ["pharmgkb"], "product_file_size": 3784, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.pathways/pharmgkb.pathways.owl", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.pathways OBO Graph JSON", "format": "json", "id": "obo-db-ingest.pharmgkb.pathways.json", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.pathways OBO Graph JSON", "original_source": ["pharmgkb"], "product_file_size": 2947, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.pathways/pharmgkb.pathways.json", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.variant OBO", "format": "obo", "id": "obo-db-ingest.pharmgkb.variant.obo", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.variant OBO", "original_source": ["pharmgkb"], "product_file_size": 102072, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.variant/pharmgkb.variant.obo", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.variant OWL", "format": "owl", "id": "obo-db-ingest.pharmgkb.variant.owl", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.variant OWL", "original_source": ["pharmgkb"], "product_file_size": 107225, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.variant/pharmgkb.variant.owl", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.variant OBO Graph JSON", "format": "json", "id": "obo-db-ingest.pharmgkb.variant.json", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.variant OBO Graph JSON", "original_source": ["pharmgkb"], "product_file_size": 92435, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.variant/pharmgkb.variant.json", "secondary_source": ["obo-db-ingest"]}, {"category": "MappingProduct", "description": "pharmgkb.variant SSSOM", "format": "sssom", "id": "obo-db-ingest.pharmgkb.variant.sssom.tsv", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.variant SSSOM", "original_source": ["pharmgkb"], "product_file_size": 56599, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.variant/pharmgkb.variant.sssom.tsv", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pid.pathway OBO", "format": "obo", "id": "obo-db-ingest.pid.pathway.obo", "name": "pid.pathway OBO", "product_file_size": 53872, "product_url": "https://w3id.org/biopragmatics/resources/pid.pathway/pid.pathway.obo"}, {"category": "Product", "description": "pid.pathway OWL", "format": "owl", "id": "obo-db-ingest.pid.pathway.owl", "name": "pid.pathway OWL", "product_file_size": 54779, "product_url": "https://w3id.org/biopragmatics/resources/pid.pathway/pid.pathway.owl"}, {"category": "Product", "description": "pid.pathway OBO Graph JSON", "format": "json", "id": "obo-db-ingest.pid.pathway.json", "name": "pid.pathway OBO Graph JSON", "product_file_size": 47185, "product_url": "https://w3id.org/biopragmatics/resources/pid.pathway/pid.pathway.json"}, {"category": "Product", "description": "pombase OBO", "format": "obo", "id": "obo-db-ingest.pombase.obo", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "pombase OBO", "product_file_size": 232235, "product_url": "https://w3id.org/biopragmatics/resources/pombase/pombase.obo"}, {"category": "Product", "description": "pombase OWL", "format": "owl", "id": "obo-db-ingest.pombase.owl", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "pombase OWL", "product_file_size": 422834, "product_url": "https://w3id.org/biopragmatics/resources/pombase/pombase.owl"}, {"category": "Product", "description": "pombase OBO Graph JSON", "format": "json", "id": "obo-db-ingest.pombase.json", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "pombase OBO Graph JSON", "product_file_size": 368065, "product_url": "https://w3id.org/biopragmatics/resources/pombase/pombase.json"}, {"category": "Product", "description": "reactome OBO", "format": "obo", "id": "obo-db-ingest.reactome.obo", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "reactome OBO", "product_file_size": 4695236, "product_url": "https://w3id.org/biopragmatics/resources/reactome/reactome.obo"}, {"category": "Product", "description": "reactome OWL", "format": "owl", "id": "obo-db-ingest.reactome.owl", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "reactome OWL", "product_url": "https://w3id.org/biopragmatics/resources/reactome/reactome.owl", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/reactome/reactome.owl (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fa35c7633b0>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-09_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/reactome/reactome.owl (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7ff2449aaf50>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "reactome OBO Graph JSON", "format": "json", "id": "obo-db-ingest.reactome.json", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "reactome OBO Graph JSON", "product_url": "https://w3id.org/biopragmatics/resources/reactome/reactome.json", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/reactome/reactome.json (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fa35c762270>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/reactome/reactome.json (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f28e32a9570>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-09_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "rgd OBO", "format": "obo", "id": "obo-db-ingest.rgd.obo", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "rgd OBO", "product_file_size": 3728799, "product_url": "https://w3id.org/biopragmatics/resources/rgd/rgd.obo"}, {"category": "Product", "description": "rgd OWL", "format": "owl", "id": "obo-db-ingest.rgd.owl", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "rgd OWL", "product_file_size": 231833, "product_url": "https://w3id.org/biopragmatics/resources/rgd/rgd.owl"}, {"category": "Product", "description": "rgd OBO Graph JSON", "format": "json", "id": "obo-db-ingest.rgd.json", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "rgd OBO Graph JSON", "product_file_size": 4448579, "product_url": "https://w3id.org/biopragmatics/resources/rgd/rgd.json"}, {"category": "MappingProduct", "description": "rgd SSSOM", "format": "sssom", "id": "obo-db-ingest.rgd.sssom.tsv", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "rgd SSSOM", "product_file_size": 632341, "product_url": "https://w3id.org/biopragmatics/resources/rgd/rgd.sssom.tsv"}, {"category": "Product", "description": "rhea OBO", "format": "obo", "id": "obo-db-ingest.rhea.obo", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "rhea OBO", "original_source": ["rhea"], "product_file_size": 4826502, "product_url": "https://w3id.org/biopragmatics/resources/rhea/rhea.obo", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "rhea OWL", "format": "owl", "id": "obo-db-ingest.rhea.owl", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "rhea OWL", "original_source": ["rhea"], "product_url": "https://w3id.org/biopragmatics/resources/rhea/rhea.owl", "secondary_source": ["obo-db-ingest"], "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/rhea/rhea.owl (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fa35c761be0>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "rhea OBO Graph JSON", "format": "json", "id": "obo-db-ingest.rhea.json", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "rhea OBO Graph JSON", "original_source": ["rhea"], "product_url": "https://w3id.org/biopragmatics/resources/rhea/rhea.json", "secondary_source": ["obo-db-ingest"], "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/rhea/rhea.json (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fa35c7716d0>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "MappingProduct", "description": "Rhea SSSOM", "format": "sssom", "id": "obo-db-ingest.rhea.sssom.tsv", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "Rhea SSSOM", "original_source": ["rhea", "reactome", "kegg", "metacyc", "m-csa", "ecocyc"], "product_file_size": 154171, "product_url": "https://w3id.org/biopragmatics/resources/rhea/rhea.sssom.tsv", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "ror OBO", "format": "obo", "id": "obo-db-ingest.ror.obo", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "ror OBO", "product_file_size": 9684743, "product_url": "https://w3id.org/biopragmatics/resources/ror/ror.obo"}, {"category": "Product", "description": "ror OWL", "format": "owl", "id": "obo-db-ingest.ror.owl", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "ror OWL", "product_url": "https://w3id.org/biopragmatics/resources/ror/ror.owl", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "ror OBO Graph JSON", "format": "json", "id": "obo-db-ingest.ror.json", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "ror OBO Graph JSON", "product_url": "https://w3id.org/biopragmatics/resources/ror/ror.json", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/ror/ror.json (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fa35c771610>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "MappingProduct", "description": "ror SSSOM", "format": "sssom", "id": "obo-db-ingest.ror.sssom.tsv", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "ror SSSOM", "product_file_size": 2333177, "product_url": "https://w3id.org/biopragmatics/resources/ror/ror.sssom.tsv"}, {"category": "Product", "description": "sgd OBO", "format": "obo", "id": "obo-db-ingest.sgd.obo", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "sgd OBO", "product_file_size": 544985, "product_url": "https://w3id.org/biopragmatics/resources/sgd/sgd.obo"}, {"category": "Product", "description": "sgd OWL", "format": "owl", "id": "obo-db-ingest.sgd.owl", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "sgd OWL", "product_file_size": 680487, "product_url": "https://w3id.org/biopragmatics/resources/sgd/sgd.owl"}, {"category": "Product", "description": "sgd OBO Graph JSON", "format": "json", "id": "obo-db-ingest.sgd.json", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "sgd OBO Graph JSON", "product_file_size": 628568, "product_url": "https://w3id.org/biopragmatics/resources/sgd/sgd.json"}, {"category": "Product", "description": "signor OBO", "format": "obo", "id": "obo-db-ingest.signor.obo", "license": {"id": "https://creativecommons.org/licenses/by-nc/4.0/", "label": "CC-BY-NC-4.0"}, "name": "signor OBO", "product_file_size": 45847, "product_url": "https://w3id.org/biopragmatics/resources/signor/signor.obo"}, {"category": "Product", "description": "signor OWL", "format": "owl", "id": "obo-db-ingest.signor.owl", "license": {"id": "https://creativecommons.org/licenses/by-nc/4.0/", "label": "CC-BY-NC-4.0"}, "name": "signor OWL", "product_file_size": 71729, "product_url": "https://w3id.org/biopragmatics/resources/signor/signor.owl"}, {"category": "Product", "description": "signor OBO Graph JSON", "format": "json", "id": "obo-db-ingest.signor.json", "license": {"id": "https://creativecommons.org/licenses/by-nc/4.0/", "label": "CC-BY-NC-4.0"}, "name": "signor OBO Graph JSON", "product_file_size": 50966, "product_url": "https://w3id.org/biopragmatics/resources/signor/signor.json"}, {"category": "Product", "description": "slm OBO", "format": "obo", "id": "obo-db-ingest.slm.obo", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "slm OBO", "product_url": "https://w3id.org/biopragmatics/resources/slm/slm.obo", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/slm/slm.obo (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fa35c760410>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "slm OWL", "format": "owl", "id": "obo-db-ingest.slm.owl", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "slm OWL", "product_url": "https://w3id.org/biopragmatics/resources/slm/slm.owl", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/slm/slm.owl (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fa35c762780>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "slm OBO Graph JSON", "format": "json", "id": "obo-db-ingest.slm.json", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "slm OBO Graph JSON", "product_url": "https://w3id.org/biopragmatics/resources/slm/slm.json", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/slm/slm.json (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fa35c7633b0>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/slm/slm.json (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f28e32ab970>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-09_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "MappingProduct", "description": "slm SSSOM", "format": "sssom", "id": "obo-db-ingest.slm.sssom.tsv", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "slm SSSOM", "product_file_size": 10965328, "product_url": "https://w3id.org/biopragmatics/resources/slm/slm.sssom.tsv"}, {"category": "Product", "description": "sty OBO", "format": "obo", "id": "obo-db-ingest.sty.obo", "name": "sty OBO", "product_file_size": 2265, "product_url": "https://w3id.org/biopragmatics/resources/sty/sty.obo"}, {"category": "Product", "description": "sty OWL", "format": "owl", "id": "obo-db-ingest.sty.owl", "name": "sty OWL", "product_file_size": 3613, "product_url": "https://w3id.org/biopragmatics/resources/sty/sty.owl"}, {"category": "Product", "description": "sty OBO Graph JSON", "format": "json", "id": "obo-db-ingest.sty.json", "name": "sty OBO Graph JSON", "product_file_size": 3145, "product_url": "https://w3id.org/biopragmatics/resources/sty/sty.json"}, {"category": "Product", "description": "uniprot OBO", "format": "obo", "id": "obo-db-ingest.uniprot.obo", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "uniprot OBO", "product_url": "https://w3id.org/biopragmatics/resources/uniprot/uniprot.obo", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/uniprot/uniprot.obo (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f28e328a800>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "uniprot OWL", "format": "owl", "id": "obo-db-ingest.uniprot.owl", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "uniprot OWL", "product_url": "https://w3id.org/biopragmatics/resources/uniprot/uniprot.owl", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-09_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/uniprot/uniprot.owl (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f4fb79b59a0>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "uniprot OBO Graph JSON", "format": "json", "id": "obo-db-ingest.uniprot.json", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "uniprot OBO Graph JSON", "product_url": "https://w3id.org/biopragmatics/resources/uniprot/uniprot.json", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/uniprot/uniprot.json (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f28e32a8940>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-09_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/uniprot/uniprot.json (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7ff2449aa560>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "MappingProduct", "description": "uniprot SSSOM", "format": "sssom", "id": "obo-db-ingest.uniprot.sssom.tsv", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "uniprot SSSOM", "product_file_size": 1503008, "product_url": "https://w3id.org/biopragmatics/resources/uniprot/uniprot.sssom.tsv"}, {"category": "Product", "description": "uniprot.ptm OBO", "format": "obo", "id": "obo-db-ingest.uniprot.ptm.obo", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "uniprot.ptm OBO", "product_file_size": 13150, "product_url": "https://w3id.org/biopragmatics/resources/uniprot.ptm/uniprot.ptm.obo"}, {"category": "Product", "description": "uniprot.ptm OWL", "format": "owl", "id": "obo-db-ingest.uniprot.ptm.owl", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "uniprot.ptm OWL", "product_file_size": 19031, "product_url": "https://w3id.org/biopragmatics/resources/uniprot.ptm/uniprot.ptm.owl"}, {"category": "Product", "description": "uniprot.ptm OBO Graph JSON", "format": "json", "id": "obo-db-ingest.uniprot.ptm.json", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "uniprot.ptm OBO Graph JSON", "product_file_size": 17583, "product_url": "https://w3id.org/biopragmatics/resources/uniprot.ptm/uniprot.ptm.json"}, {"category": "MappingProduct", "description": "uniprot.ptm SSSOM", "format": "sssom", "id": "obo-db-ingest.uniprot.ptm.sssom.tsv", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "uniprot.ptm SSSOM", "product_file_size": 8833, "product_url": "https://w3id.org/biopragmatics/resources/uniprot.ptm/uniprot.ptm.sssom.tsv"}, {"category": "Product", "description": "wikipathways OBO", "format": "obo", "id": "obo-db-ingest.wikipathways.obo", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "wikipathways OBO", "product_file_size": 300327, "product_url": "https://w3id.org/biopragmatics/resources/wikipathways/wikipathways.obo"}, {"category": "Product", "description": "wikipathways OWL", "format": "owl", "id": "obo-db-ingest.wikipathways.owl", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "wikipathways OWL", "product_file_size": 495634, "product_url": "https://w3id.org/biopragmatics/resources/wikipathways/wikipathways.owl"}, {"category": "Product", "description": "wikipathways OBO Graph JSON", "format": "json", "id": "obo-db-ingest.wikipathways.json", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "wikipathways OBO Graph JSON", "product_file_size": 394845, "product_url": "https://w3id.org/biopragmatics/resources/wikipathways/wikipathways.json"}, {"category": "Product", "description": "zfin OBO", "format": "obo", "id": "obo-db-ingest.zfin.obo", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "zfin OBO", "original_source": ["zfin"], "product_file_size": 2643947, "product_url": "https://w3id.org/biopragmatics/resources/zfin/zfin.obo", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "zfin OWL", "format": "owl", "id": "obo-db-ingest.zfin.owl", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "zfin OWL", "original_source": ["zfin"], "product_url": "https://w3id.org/biopragmatics/resources/zfin/zfin.owl", "secondary_source": ["obo-db-ingest"], "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-09_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/zfin/zfin.owl (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f4fb79e83b0>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-09_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/zfin/zfin.owl (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7ff244989120>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "zfin OBO Graph JSON", "format": "json", "id": "obo-db-ingest.zfin.json", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "zfin OBO Graph JSON", "original_source": ["zfin"], "product_url": "https://w3id.org/biopragmatics/resources/zfin/zfin.json", "secondary_source": ["obo-db-ingest"], "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/zfin/zfin.json (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fa35c761070>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "MappingProduct", "description": "zfin SSSOM", "id": "obo-db-ingest.zfin.sssom.tsv", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "zfin SSSOM", "original_source": ["zfin"], "product_file_size": 374627, "product_url": "https://w3id.org/biopragmatics/resources/zfin/zfin.sssom.tsv", "secondary_source": ["obo-db-ingest"]}]
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"CC0-1.0"}, "name": "ITIS OWL", "original_source": ["itis"], "product_file_size": 14607611, "product_url": "https://w3id.org/biopragmatics/resources/itis/itis.owl.gz", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "compression": "gzip", "description": "ITIS OBO Graph JSON", "format": "json", "id": "obo-db-ingest.itis.json", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "ITIS OBO Graph JSON", "original_source": ["itis"], "product_file_size": 12669423, "product_url": "https://w3id.org/biopragmatics/resources/itis/itis.json.gz", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "kegg.genome OBO", "format": "obo", "id": "obo-db-ingest.kegg.genome.obo", "license": {"id": "https://www.kegg.jp/kegg/legal.html", "label": "Custom"}, "name": "kegg.genome OBO", "product_file_size": 198714, "product_url": "https://w3id.org/biopragmatics/resources/kegg.genome/kegg.genome.obo"}, {"category": "Product", "description": "kegg.genome OWL", "format": "owl", "id": "obo-db-ingest.kegg.genome.owl", "license": {"id": "https://www.kegg.jp/kegg/legal.html", "label": "Custom"}, "name": "kegg.genome OWL", "product_file_size": 192384, "product_url": "https://w3id.org/biopragmatics/resources/kegg.genome/kegg.genome.owl"}, {"category": "Product", "description": "kegg.genome OBO Graph JSON", "format": "json", "id": "obo-db-ingest.kegg.genome.json", "license": {"id": "https://www.kegg.jp/kegg/legal.html", "label": "Custom"}, "name": "kegg.genome OBO Graph JSON", "product_file_size": 20525, "product_url": "https://w3id.org/biopragmatics/resources/kegg.genome/kegg.genome.json"}, {"category": "Product", "description": "mesh OBO", "format": "obo", "id": "obo-db-ingest.mesh.obo", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "mesh OBO", "product_file_size": 13534704, "product_url": "https://w3id.org/biopragmatics/resources/mesh/mesh.obo"}, {"category": "Product", "description": "mesh OWL", "format": "owl", "id": "obo-db-ingest.mesh.owl", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "mesh OWL", "product_url": "https://w3id.org/biopragmatics/resources/mesh/mesh.owl", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "mesh OBO Graph JSON", "format": "json", "id": "obo-db-ingest.mesh.json", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "mesh OBO Graph JSON", "product_url": "https://w3id.org/biopragmatics/resources/mesh/mesh.json", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/mesh/mesh.json (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fa35c763470>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-09_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/mesh/mesh.json (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f4fb79e8fb0>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "mgi OBO", "format": "obo", "id": "obo-db-ingest.mgi.obo", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "mgi OBO", "product_url": "https://w3id.org/biopragmatics/resources/mgi/mgi.obo", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/mgi/mgi.obo (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f28e3289a20>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "mgi OWL", "format": "owl", "id": "obo-db-ingest.mgi.owl", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "mgi OWL", "product_url": "https://w3id.org/biopragmatics/resources/mgi/mgi.owl", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "mgi OBO Graph JSON", "format": "json", "id": "obo-db-ingest.mgi.json", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "mgi OBO Graph JSON", "product_url": "https://w3id.org/biopragmatics/resources/mgi/mgi.json", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/mgi/mgi.json (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fa35c761850>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/mgi/mgi.json (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f28e32a8190>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-09_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "MappingProduct", "description": "mgi SSSOM", "format": "sssom", "id": "obo-db-ingest.mgi.sssom.tsv", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "mgi SSSOM", "product_file_size": 1080459, "product_url": "https://w3id.org/biopragmatics/resources/mgi/mgi.sssom.tsv"}, {"category": "Product", "description": "mirbase OBO", "format": "obo", "id": "obo-db-ingest.mirbase.obo", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "mirbase OBO", "product_file_size": 715053, "product_url": "https://w3id.org/biopragmatics/resources/mirbase/mirbase.obo"}, {"category": "Product", "description": "mirbase OWL", "format": "owl", "id": "obo-db-ingest.mirbase.owl", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "mirbase OWL", "product_file_size": 1062694, "product_url": "https://w3id.org/biopragmatics/resources/mirbase/mirbase.owl"}, {"category": "Product", "description": "mirbase OBO Graph JSON", "format": "json", "id": "obo-db-ingest.mirbase.json", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "mirbase OBO Graph JSON", "product_file_size": 825009, "product_url": "https://w3id.org/biopragmatics/resources/mirbase/mirbase.json"}, {"category": "MappingProduct", "description": "mirbase SSSOM", "format": "sssom", "id": "obo-db-ingest.mirbase.sssom.tsv", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "mirbase SSSOM", "product_file_size": 53837, "product_url": "https://w3id.org/biopragmatics/resources/mirbase/mirbase.sssom.tsv"}, {"category": "Product", "description": "mirbase.family OBO", "format": "obo", "id": "obo-db-ingest.mirbase.family.obo", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "mirbase.family OBO", "product_file_size": 175105, "product_url": "https://w3id.org/biopragmatics/resources/mirbase.family/mirbase.family.obo"}, {"category": "Product", "description": "mirbase.family OWL", "format": "owl", "id": "obo-db-ingest.mirbase.family.owl", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "mirbase.family OWL", "product_file_size": 248775, "product_url": "https://w3id.org/biopragmatics/resources/mirbase.family/mirbase.family.owl"}, {"category": "Product", "description": "mirbase.family OBO Graph JSON", "format": "json", "id": "obo-db-ingest.mirbase.family.json", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "mirbase.family OBO Graph JSON", "product_file_size": 113961, "product_url": "https://w3id.org/biopragmatics/resources/mirbase.family/mirbase.family.json"}, {"category": "Product", "description": "mirbase.mature OBO", "format": "obo", "id": "obo-db-ingest.mirbase.mature.obo", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "mirbase.mature OBO", "product_file_size": 329057, "product_url": "https://w3id.org/biopragmatics/resources/mirbase.mature/mirbase.mature.obo"}, {"category": "Product", "description": "mirbase.mature OWL", "format": "owl", "id": "obo-db-ingest.mirbase.mature.owl", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "mirbase.mature OWL", "product_file_size": 549748, "product_url": "https://w3id.org/biopragmatics/resources/mirbase.mature/mirbase.mature.owl"}, {"category": "Product", "description": "mirbase.mature OBO Graph JSON", "format": "json", "id": "obo-db-ingest.mirbase.mature.json", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "mirbase.mature OBO Graph JSON", "product_file_size": 373573, "product_url": "https://w3id.org/biopragmatics/resources/mirbase.mature/mirbase.mature.json"}, {"category": "MappingProduct", "description": "mirbase.mature SSSOM", "format": "sssom", "id": "obo-db-ingest.mirbase.mature.sssom.tsv", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "mirbase.mature SSSOM", "product_file_size": 64, "product_url": "https://w3id.org/biopragmatics/resources/mirbase.mature/mirbase.mature.sssom.tsv"}, {"category": "Product", "description": "msigdb OBO", "format": "obo", "id": "obo-db-ingest.msigdb.obo", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "msigdb OBO", "product_url": "https://w3id.org/biopragmatics/resources/msigdb/msigdb.obo", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/msigdb/msigdb.obo (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fa35c761820>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "msigdb OWL", "format": "owl", "id": "obo-db-ingest.msigdb.owl", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "msigdb OWL", "product_url": "https://w3id.org/biopragmatics/resources/msigdb/msigdb.owl", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "msigdb OBO Graph JSON", "format": "json", "id": "obo-db-ingest.msigdb.json", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "msigdb OBO Graph JSON", "product_url": "https://w3id.org/biopragmatics/resources/msigdb/msigdb.json", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-09_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/msigdb/msigdb.json (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7ff2449ab670>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "MappingProduct", "description": "msigdb SSSOM", "format": "sssom", "id": "obo-db-ingest.msigdb.sssom.tsv", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "msigdb SSSOM", "product_file_size": 92467, "product_url": "https://w3id.org/biopragmatics/resources/msigdb/msigdb.sssom.tsv"}, {"category": "Product", "description": "ncbi.gc OBO", "format": "obo", "id": "obo-db-ingest.ncbi.gc.obo", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "ncbi.gc OBO", "product_file_size": 1425, "product_url": "https://w3id.org/biopragmatics/resources/ncbi.gc/ncbi.gc.obo"}, {"category": "Product", "description": "ncbi.gc OWL", "format": "owl", "id": "obo-db-ingest.ncbi.gc.owl", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "ncbi.gc OWL", "product_file_size": 2223, "product_url": "https://w3id.org/biopragmatics/resources/ncbi.gc/ncbi.gc.owl"}, {"category": "Product", "description": "ncbi.gc OBO Graph JSON", "format": "json", "id": "obo-db-ingest.ncbi.gc.json", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "ncbi.gc OBO Graph JSON", "product_file_size": 1886, "product_url": "https://w3id.org/biopragmatics/resources/ncbi.gc/ncbi.gc.json"}, {"category": "MappingProduct", "description": "ncbi.gc SSSOM", "format": "sssom", "id": "obo-db-ingest.ncbi.gc.sssom.tsv", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "ncbi.gc SSSOM", "product_file_size": 191, "product_url": "https://w3id.org/biopragmatics/resources/ncbi.gc/ncbi.gc.sssom.tsv"}, {"category": "Product", "description": "nihreporter.project OBO", "format": "obo", "id": "obo-db-ingest.nihreporter.project.obo", "name": "nihreporter.project OBO", "product_url": "https://w3id.org/biopragmatics/resources/nihreporter.project/nihreporter.project.obo", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/nihreporter.project/nihreporter.project.obo (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f28e32a9990>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "nihreporter.project OWL", "format": "owl", "id": "obo-db-ingest.nihreporter.project.owl", "name": "nihreporter.project OWL", "product_url": "https://w3id.org/biopragmatics/resources/nihreporter.project/nihreporter.project.owl", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "nihreporter.project OBO Graph JSON", "format": "json", "id": "obo-db-ingest.nihreporter.project.json", "name": "nihreporter.project OBO Graph JSON", "product_url": "https://w3id.org/biopragmatics/resources/nihreporter.project/nihreporter.project.json", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/nihreporter.project/nihreporter.project.json (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fa35c762b10>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "nlm OBO", "format": "obo", "id": "obo-db-ingest.nlm.obo", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "nlm OBO", "product_file_size": 2007193, "product_url": "https://w3id.org/biopragmatics/resources/nlm/nlm.obo"}, {"category": "Product", "description": "nlm OWL", "format": "owl", "id": "obo-db-ingest.nlm.owl", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "nlm OWL", "product_file_size": 2471988, "product_url": "https://w3id.org/biopragmatics/resources/nlm/nlm.owl"}, {"category": "Product", "description": "nlm OBO Graph JSON", "format": "json", "id": "obo-db-ingest.nlm.json", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "nlm OBO Graph JSON", "product_file_size": 2497051, "product_url": "https://w3id.org/biopragmatics/resources/nlm/nlm.json"}, {"category": "MappingProduct", "description": "nlm SSSOM", "format": "sssom", "id": "obo-db-ingest.nlm.sssom.tsv", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "nlm SSSOM", "product_file_size": 422890, "product_url": "https://w3id.org/biopragmatics/resources/nlm/nlm.sssom.tsv"}, {"category": "Product", "description": "nlm.publisher OBO", "format": "obo", "id": "obo-db-ingest.nlm.publisher.obo", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "nlm.publisher OBO", "product_file_size": 9570, "product_url": "https://w3id.org/biopragmatics/resources/nlm.publisher/nlm.publisher.obo"}, {"category": "Product", "description": "nlm.publisher OWL", "format": "owl", "id": "obo-db-ingest.nlm.publisher.owl", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "nlm.publisher OWL", "product_file_size": 12531, "product_url": "https://w3id.org/biopragmatics/resources/nlm.publisher/nlm.publisher.owl"}, {"category": "Product", "description": "nlm.publisher OBO Graph JSON", "format": "json", "id": "obo-db-ingest.nlm.publisher.json", "license": {"id": "https://creativecommons.org/public-domain/pdm/", "label": "public domain"}, "name": "nlm.publisher OBO Graph JSON", "product_file_size": 12675, "product_url": "https://w3id.org/biopragmatics/resources/nlm.publisher/nlm.publisher.json"}, {"category": "Product", "description": "npass OBO", "format": "obo", "id": "obo-db-ingest.npass.obo", "license": {"id": "https://creativecommons.org/licenses/by-nc/4.0/", 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"https://w3id.org/biopragmatics/resources/reactome/reactome.owl", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/reactome/reactome.owl (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fa35c7633b0>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-09_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/reactome/reactome.owl (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7ff2449aaf50>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "reactome OBO Graph JSON", "format": "json", "id": "obo-db-ingest.reactome.json", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "reactome OBO Graph JSON", "product_url": "https://w3id.org/biopragmatics/resources/reactome/reactome.json", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/reactome/reactome.json (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fa35c762270>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/reactome/reactome.json (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f28e32a9570>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-09_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "rgd OBO", "format": "obo", "id": "obo-db-ingest.rgd.obo", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "rgd OBO", "product_file_size": 3728799, "product_url": "https://w3id.org/biopragmatics/resources/rgd/rgd.obo"}, {"category": "Product", "description": "rgd OWL", "format": "owl", "id": "obo-db-ingest.rgd.owl", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "rgd OWL", "product_file_size": 231833, "product_url": "https://w3id.org/biopragmatics/resources/rgd/rgd.owl"}, {"category": "Product", "description": "rgd OBO Graph JSON", "format": "json", "id": "obo-db-ingest.rgd.json", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "rgd OBO Graph JSON", "product_file_size": 4448579, "product_url": "https://w3id.org/biopragmatics/resources/rgd/rgd.json"}, {"category": "MappingProduct", "description": "rgd SSSOM", "format": "sssom", "id": "obo-db-ingest.rgd.sssom.tsv", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "rgd SSSOM", "product_file_size": 632341, "product_url": "https://w3id.org/biopragmatics/resources/rgd/rgd.sssom.tsv"}, {"category": "Product", "description": "rhea OBO", "format": "obo", "id": "obo-db-ingest.rhea.obo", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "rhea OBO", "original_source": ["rhea"], "product_file_size": 4826502, "product_url": "https://w3id.org/biopragmatics/resources/rhea/rhea.obo", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "rhea OWL", "format": "owl", "id": "obo-db-ingest.rhea.owl", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "rhea OWL", "original_source": ["rhea"], "product_url": "https://w3id.org/biopragmatics/resources/rhea/rhea.owl", "secondary_source": ["obo-db-ingest"], "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/rhea/rhea.owl (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fa35c761be0>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "rhea OBO Graph JSON", "format": "json", "id": "obo-db-ingest.rhea.json", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "rhea OBO Graph JSON", "original_source": ["rhea"], "product_url": "https://w3id.org/biopragmatics/resources/rhea/rhea.json", "secondary_source": ["obo-db-ingest"], "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/rhea/rhea.json (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fa35c7716d0>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "MappingProduct", "description": "Rhea SSSOM", "format": "sssom", "id": "obo-db-ingest.rhea.sssom.tsv", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "Rhea SSSOM", "original_source": ["rhea", "reactome", "kegg", "metacyc", "m-csa", "ecocyc"], "product_file_size": 154171, "product_url": "https://w3id.org/biopragmatics/resources/rhea/rhea.sssom.tsv", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "ror OBO", "format": "obo", "id": "obo-db-ingest.ror.obo", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "ror OBO", "product_file_size": 9684743, "product_url": "https://w3id.org/biopragmatics/resources/ror/ror.obo"}, {"category": "Product", "description": "ror OWL", "format": "owl", "id": "obo-db-ingest.ror.owl", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "ror OWL", "product_url": "https://w3id.org/biopragmatics/resources/ror/ror.owl", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "ror OBO Graph JSON", "format": "json", "id": "obo-db-ingest.ror.json", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "ror OBO Graph JSON", "product_url": "https://w3id.org/biopragmatics/resources/ror/ror.json", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/ror/ror.json (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fa35c771610>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "MappingProduct", "description": "ror SSSOM", "format": "sssom", "id": "obo-db-ingest.ror.sssom.tsv", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "ror SSSOM", "product_file_size": 2333177, "product_url": "https://w3id.org/biopragmatics/resources/ror/ror.sssom.tsv"}, {"category": "Product", "description": "sgd OBO", "format": "obo", "id": "obo-db-ingest.sgd.obo", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "sgd OBO", "product_file_size": 544985, "product_url": "https://w3id.org/biopragmatics/resources/sgd/sgd.obo"}, {"category": "Product", "description": "sgd OWL", "format": "owl", "id": "obo-db-ingest.sgd.owl", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "sgd OWL", "product_file_size": 680487, "product_url": "https://w3id.org/biopragmatics/resources/sgd/sgd.owl"}, {"category": "Product", "description": "sgd OBO Graph JSON", "format": "json", "id": "obo-db-ingest.sgd.json", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "sgd OBO Graph JSON", "product_file_size": 628568, "product_url": "https://w3id.org/biopragmatics/resources/sgd/sgd.json"}, {"category": "Product", "description": "signor OBO", "format": "obo", "id": "obo-db-ingest.signor.obo", "license": {"id": "https://creativecommons.org/licenses/by-nc/4.0/", "label": "CC-BY-NC-4.0"}, "name": "signor OBO", "product_file_size": 45847, "product_url": "https://w3id.org/biopragmatics/resources/signor/signor.obo"}, {"category": "Product", "description": "signor OWL", "format": "owl", "id": "obo-db-ingest.signor.owl", "license": {"id": "https://creativecommons.org/licenses/by-nc/4.0/", "label": "CC-BY-NC-4.0"}, "name": "signor OWL", "product_file_size": 71729, "product_url": "https://w3id.org/biopragmatics/resources/signor/signor.owl"}, {"category": "Product", "description": "signor OBO Graph JSON", "format": "json", "id": "obo-db-ingest.signor.json", "license": {"id": "https://creativecommons.org/licenses/by-nc/4.0/", "label": "CC-BY-NC-4.0"}, "name": "signor OBO Graph JSON", "product_file_size": 50966, "product_url": "https://w3id.org/biopragmatics/resources/signor/signor.json"}, {"category": "Product", "description": "slm OBO", "format": "obo", "id": "obo-db-ingest.slm.obo", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "slm OBO", "product_url": "https://w3id.org/biopragmatics/resources/slm/slm.obo", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/slm/slm.obo (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fa35c760410>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "slm OWL", "format": "owl", "id": "obo-db-ingest.slm.owl", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "slm OWL", "product_url": "https://w3id.org/biopragmatics/resources/slm/slm.owl", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/slm/slm.owl (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fa35c762780>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "slm OBO Graph JSON", "format": "json", "id": "obo-db-ingest.slm.json", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "slm OBO Graph JSON", "product_url": "https://w3id.org/biopragmatics/resources/slm/slm.json", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/slm/slm.json (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fa35c7633b0>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/slm/slm.json (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f28e32ab970>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-09_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "MappingProduct", "description": "slm SSSOM", "format": "sssom", "id": "obo-db-ingest.slm.sssom.tsv", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "slm SSSOM", "product_file_size": 10965328, "product_url": "https://w3id.org/biopragmatics/resources/slm/slm.sssom.tsv"}, {"category": "Product", "description": "sty OBO", "format": "obo", "id": "obo-db-ingest.sty.obo", "name": "sty OBO", "product_file_size": 2265, "product_url": "https://w3id.org/biopragmatics/resources/sty/sty.obo"}, {"category": "Product", "description": "sty OWL", "format": "owl", "id": "obo-db-ingest.sty.owl", "name": "sty OWL", "product_file_size": 3613, "product_url": "https://w3id.org/biopragmatics/resources/sty/sty.owl"}, {"category": "Product", "description": "sty OBO Graph JSON", "format": "json", "id": "obo-db-ingest.sty.json", "name": "sty OBO Graph JSON", "product_file_size": 3145, "product_url": "https://w3id.org/biopragmatics/resources/sty/sty.json"}, {"category": "Product", "description": "uniprot OBO", "format": "obo", "id": "obo-db-ingest.uniprot.obo", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "uniprot OBO", "product_url": "https://w3id.org/biopragmatics/resources/uniprot/uniprot.obo", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/uniprot/uniprot.obo (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f28e328a800>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "uniprot OWL", "format": "owl", "id": "obo-db-ingest.uniprot.owl", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "uniprot OWL", "product_url": "https://w3id.org/biopragmatics/resources/uniprot/uniprot.owl", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-09_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/uniprot/uniprot.owl (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f4fb79b59a0>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "uniprot OBO Graph JSON", "format": "json", "id": "obo-db-ingest.uniprot.json", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "uniprot OBO Graph JSON", "product_url": "https://w3id.org/biopragmatics/resources/uniprot/uniprot.json", "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/uniprot/uniprot.json (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f28e32a8940>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-09_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/uniprot/uniprot.json (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7ff2449aa560>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "MappingProduct", "description": "uniprot SSSOM", "format": "sssom", "id": "obo-db-ingest.uniprot.sssom.tsv", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "uniprot SSSOM", "product_file_size": 1503008, "product_url": "https://w3id.org/biopragmatics/resources/uniprot/uniprot.sssom.tsv"}, {"category": "Product", "description": "uniprot.ptm OBO", "format": "obo", "id": "obo-db-ingest.uniprot.ptm.obo", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "uniprot.ptm OBO", "product_file_size": 13150, "product_url": "https://w3id.org/biopragmatics/resources/uniprot.ptm/uniprot.ptm.obo"}, {"category": "Product", "description": "uniprot.ptm OWL", "format": "owl", "id": "obo-db-ingest.uniprot.ptm.owl", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "uniprot.ptm OWL", "product_file_size": 19031, "product_url": "https://w3id.org/biopragmatics/resources/uniprot.ptm/uniprot.ptm.owl"}, {"category": "Product", "description": "uniprot.ptm OBO Graph JSON", "format": "json", "id": "obo-db-ingest.uniprot.ptm.json", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "uniprot.ptm OBO Graph JSON", "product_file_size": 17583, "product_url": "https://w3id.org/biopragmatics/resources/uniprot.ptm/uniprot.ptm.json"}, {"category": "MappingProduct", "description": "uniprot.ptm SSSOM", "format": "sssom", "id": "obo-db-ingest.uniprot.ptm.sssom.tsv", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "uniprot.ptm SSSOM", "product_file_size": 8833, "product_url": "https://w3id.org/biopragmatics/resources/uniprot.ptm/uniprot.ptm.sssom.tsv"}, {"category": "Product", "description": "wikipathways OBO", "format": "obo", "id": "obo-db-ingest.wikipathways.obo", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "wikipathways OBO", "product_file_size": 300327, "product_url": "https://w3id.org/biopragmatics/resources/wikipathways/wikipathways.obo"}, {"category": "Product", "description": "wikipathways OWL", "format": "owl", "id": "obo-db-ingest.wikipathways.owl", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "wikipathways OWL", "product_file_size": 495634, "product_url": "https://w3id.org/biopragmatics/resources/wikipathways/wikipathways.owl"}, {"category": "Product", "description": "wikipathways OBO Graph JSON", "format": "json", "id": "obo-db-ingest.wikipathways.json", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "wikipathways OBO Graph JSON", "product_file_size": 394845, "product_url": "https://w3id.org/biopragmatics/resources/wikipathways/wikipathways.json"}, {"category": "Product", "description": "zfin OBO", "format": "obo", "id": "obo-db-ingest.zfin.obo", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "zfin OBO", "original_source": ["zfin"], "product_file_size": 2643947, "product_url": "https://w3id.org/biopragmatics/resources/zfin/zfin.obo", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "zfin OWL", "format": "owl", "id": "obo-db-ingest.zfin.owl", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "zfin OWL", "original_source": ["zfin"], "product_url": "https://w3id.org/biopragmatics/resources/zfin/zfin.owl", "secondary_source": ["obo-db-ingest"], "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-09_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/zfin/zfin.owl (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f4fb79e83b0>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-09_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/zfin/zfin.owl (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7ff244989120>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "Product", "description": "zfin OBO Graph JSON", "format": "json", "id": "obo-db-ingest.zfin.json", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "zfin OBO Graph JSON", "original_source": ["zfin"], "product_url": "https://w3id.org/biopragmatics/resources/zfin/zfin.json", "secondary_source": ["obo-db-ingest"], "warnings": ["File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-29_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Error connecting to URL_ HTTPSConnectionPool(host='w3id.org', port=443)_ Max retries exceeded with url_ /biopragmatics/resources/zfin/zfin.json (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fa35c761070>_ Failed to establish a new connection_ [Errno 101] Network is unreachable'))", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2025-09-29: HTTP 404 error when accessing file"]}, {"category": "MappingProduct", "description": "zfin SSSOM", "id": "obo-db-ingest.zfin.sssom.tsv", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0"}, "name": "zfin SSSOM", "original_source": ["zfin"], "product_file_size": 374627, "product_url": "https://w3id.org/biopragmatics/resources/zfin/zfin.sssom.tsv", "secondary_source": ["obo-db-ingest"]}], "repository": "https://github.com/biopragmatics/obo-db-ingest"}