name: Ribosomal Database Project
description: The Ribosomal Database Project (RDP) provided ribosome-related data services, including quality-controlled, aligned and annotated rRNA sequences, phylogenetic trees, and analysis tools for Bacterial, Archaeal, and Fungal rRNA. The RDP website is no longer available, but stand-alone tools and classifiers remain accessible via Sourceforge and community tutorials.
contacts: []
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raw_data: {"activity_status": "unresponsive", "category": "DataSource", "creation_date": "2025-09-09T00:00:00Z", "description": "The Ribosomal Database Project (RDP) provided ribosome-related data services, including quality-controlled, aligned and annotated rRNA sequences, phylogenetic trees, and analysis tools for Bacterial, Archaeal, and Fungal rRNA. The RDP website is no longer available, but stand-alone tools and classifiers remain accessible via Sourceforge and community tutorials.", "domains": ["biological systems", "genomics"], "id": "rdp", "last_modified_date": "2025-10-15T00:00:00Z", "layout": "resource_detail", "name": "Ribosomal Database Project", "products": [{"category": "ProcessProduct", "description": "Stand-alone version of the RDP Classifier for taxonomic assignment of rRNA sequences. Available via Sourceforge.", "format": "http", "id": "rdp.classifier", "name": "RDP Classifier (stand-alone)", "product_url": "https://sourceforge.net/projects/rdp-classifier/"}, {"category": "ProcessProduct", "description": "Command-line tools for rRNA sequence analysis, installation instructions and Docker images available via community tutorials.", "format": "http", "id": "rdp.tools", "name": "RDP Tools (command-line)", "product_url": "https://jfq3.gitbook.io/rdptools-docker/"}, {"category": "GraphicalInterface", "description": "Web portal for searching and browsing ncRNA sequences, structures, and annotations", "format": "http", "id": "rnacentral.portal", "name": "RNAcentral Portal", "original_source": ["5srrnadb", "crd", "dictybase", "ena", "ensembl", "evlncrnas", "expressionatlas", "flybase", "genecards", "greengenes", "gtrnadb", "hgnc", "intact", "lncbase", "lncbook", "lncipedia", "lncrnadb", "malacards", "mgnify", "mirbase", "mirgenedb", "modomics", "noncode", "pdbe", "pirbase", "plncdb", "pombase", "rdp", "rediportal", "rfam", "rgd", "ribocentre", "ribovision", "sgd", "silva", "snodb", "snopy", "snornadatabase", "srpdb", "tair", "tarbase", "tmrnawebsite", "zfin", "zwd", "rnacentral"], "product_url": "https://rnacentral.org/"}, {"category": "ProgrammingInterface", "description": "REST API for programmatic access to RNAcentral data", "format": "http", "id": "rnacentral.api", "name": "RNAcentral REST API", "original_source": ["5srrnadb", "crd", "dictybase", "ena", "ensembl", "evlncrnas", "expressionatlas", "flybase", "genecards", "greengenes", "gtrnadb", "hgnc", "intact", "lncbase", "lncbook", "lncipedia", "lncrnadb", "malacards", "mgnify", "mirbase", "mirgenedb", "modomics", "noncode", "pdbe", "pirbase", "plncdb", "pombase", "rdp", "rediportal", "rfam", "rgd", "ribocentre", "ribovision", "sgd", "silva", "snodb", "snopy", "snornadatabase", "srpdb", "tair", "tarbase", "tmrnawebsite", "zfin", "zwd", "rnacentral"], "product_url": "https://rnacentral.org/api"}, {"category": "Product", "description": "FTP archive with current and archived release files (sequences and annotations)", "format": "http", "id": "rnacentral.ftp", "name": "RNAcentral FTP Archive", "original_source": ["5srrnadb", "crd", "dictybase", "ena", "ensembl", "evlncrnas", "expressionatlas", "flybase", "genecards", "greengenes", "gtrnadb", "hgnc", "intact", "lncbase", "lncbook", "lncipedia", "lncrnadb", "malacards", "mgnify", "mirbase", "mirgenedb", "modomics", "noncode", "pdbe", "pirbase", "plncdb", "pombase", "rdp", "rediportal", "rfam", "rgd", "ribocentre", "ribovision", "sgd", "silva", "snodb", "snopy", "snornadatabase", "srpdb", "tair", "tarbase", "tmrnawebsite", "zfin", "zwd", "rnacentral"], "product_url": "https://ftp.ebi.ac.uk/pub/databases/RNAcentral"}, {"category": "DataModelProduct", "description": "Public PostgreSQL database for direct SQL access to RNAcentral data", "format": "postgres", "id": "rnacentral.public-db", "name": "RNAcentral Public Postgres Database", "original_source": ["5srrnadb", "crd", "dictybase", "ena", "ensembl", "evlncrnas", "expressionatlas", "flybase", "genecards", "greengenes", "gtrnadb", "hgnc", "intact", "lncbase", "lncbook", "lncipedia", "lncrnadb", "malacards", "mgnify", "mirbase", "mirgenedb", "modomics", "noncode", "pdbe", "pirbase", "plncdb", "pombase", "rdp", "rediportal", "rfam", "rgd", "ribocentre", "ribovision", "sgd", "silva", "snodb", "snopy", "snornadatabase", "srpdb", "tair", "tarbase", "tmrnawebsite", "zfin", "zwd", "rnacentral"], "product_url": "https://rnacentral.org/help/public-database"}], "warnings": ["The RDP website is no longer available. Only stand-alone tools and classifiers remain accessible."]}