Biomolecular Interaction Network Database (BIND)
The Biomolecular Interaction Network Database (BIND) was a database designed to store full descriptions of interactions, molecular complexes, and pathways. It is no longer active as a standalone resource but its data has been incorporated into other databases like BOND and iRefIndex.
[]
[{"category": "Product", "description": "Historical dataset of biomolecular interactions, complexes, and pathways.", "id": "bind.data", "name": "BIND Data", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bind"}]}, {"category": "Product", "description": "Historical consolidated protein interaction index in PSI-MITAB 2.5 format aggregating data from BIND, BioGrid, DIP, HPRD, IntAct, MINT, MPact, MPPI and OPHID", "format": "psi_mi_mitab", "id": "irefindex.database", "name": "iRefIndex Database", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bind"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "dip"}, {"relation_type": "prov:hadPrimarySource", "source": "hprd"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "irefindex"}, {"relation_type": "prov:hadPrimarySource", "source": "mint"}]}, {"category": "Product", "description": "Current HIPPIE v2.4 interaction dataset in the native HIPPIE tab-delimited format, last updated April 9, 2026", "format": "tsv", "id": "hippie.current.tab", "latest_version": "v2.4", "name": "HIPPIE Current TAB Dataset", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "hippie"}], "product_file_size": 138719165, "product_url": "https://cbdm-01.zdv.uni-mainz.de/~mschaefer/hippie/hippie_current.txt", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "mint"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}]}, {"category": "Product", "description": "Current HIPPIE v2.4 interaction dataset in PSI-MI TAB 2.5 format, last updated April 9, 2026", "format": "psi_mi_mitab", "id": "hippie.current.mitab", "latest_version": "v2.4", "name": "HIPPIE Current PSI-MI TAB Dataset", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "hippie"}], "product_file_size": 257038149, "product_url": "https://cbdm-01.zdv.uni-mainz.de/~mschaefer/hippie/HIPPIE-current.mitab.txt", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "mint"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}]}, {"category": "Product", "compression": "gzip", "description": "PC v14 integrated BioPAX Level 3 unified model containing normalized pathway data, molecular interactions, cross-database entity mappings, and metadata-derived content from 26 datasource rows.", "format": "biopax", "id": "pathwaycommons.biopax", "name": "Integrated BioPAX Model", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_file_size": 1700903742, "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/pc-biopax.owl.gz", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}, {"category": "Product", "description": "Download directory for Pathway Commons PC v14 integrated pathway and molecular interaction datasets, including BioPAX, SIF, GMT, TXT, and JSON-LD products.", "format": "mixed", "id": "pathwaycommons.downloads", "name": "Pathway Commons Data Downloads", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}, {"category": "Product", "compression": "gzip", "description": "PC v14 Simple Interaction Format network file representing binary pairwise molecular relationships integrated from Pathway Commons upstream datasource rows.", "format": "sif", "id": "pathwaycommons.sif", "name": "SIF Network Format", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_file_size": 9810179, "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/pc-hgnc.sif.gz", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}, {"category": "Product", "compression": "gzip", "description": "PC v14 Gene Matrix Transposed gene sets for pathway enrichment analysis, derived from the integrated Pathway Commons pathway archive.", "id": "pathwaycommons.gmt", "name": "GMT Gene Set Format", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_file_size": 262513, "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/pc-hgnc.gmt.gz", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}, {"category": "Product", "compression": "gzip", "description": "PC v14 tab-delimited extended SIF node and edge file using HGNC-oriented identifiers for integrated Pathway Commons interactions.", "format": "txt", "id": "pathwaycommons.txt", "name": "Extended SIF TXT Format", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_file_size": 115608500, "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/pc-hgnc.txt.gz", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}]
{"activity_status": "inactive", "category": "DataSource", "creation_date": "2025-10-30T00:00:00Z", "description": "The Biomolecular Interaction Network Database (BIND) was a database designed to store full descriptions of interactions, molecular complexes, and pathways. It is no longer active as a standalone resource but its data has been incorporated into other databases like BOND and iRefIndex.", "domains": ["biomedical", "pathways"], "homepage_url": "http://bind.ca", "id": "bind", "last_modified_date": "2025-11-25T00:00:00Z", "layout": "resource_detail", "name": "Biomolecular Interaction Network Database (BIND)", "products": [{"category": "Product", "description": "Historical dataset of biomolecular interactions, complexes, and pathways.", "id": "bind.data", "name": "BIND Data", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bind"}]}, {"category": "Product", "description": "Historical consolidated protein interaction index in PSI-MITAB 2.5 format aggregating data from BIND, BioGrid, DIP, HPRD, IntAct, MINT, MPact, MPPI and OPHID", "format": "psi_mi_mitab", "id": "irefindex.database", "name": "iRefIndex Database", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bind"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "dip"}, {"relation_type": "prov:hadPrimarySource", "source": "hprd"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "irefindex"}, {"relation_type": "prov:hadPrimarySource", "source": "mint"}]}, {"category": "Product", "description": "Current HIPPIE v2.4 interaction dataset in the native HIPPIE tab-delimited format, last updated April 9, 2026", "format": "tsv", "id": "hippie.current.tab", "latest_version": "v2.4", "name": "HIPPIE Current TAB Dataset", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "hippie"}], "product_file_size": 138719165, "product_url": "https://cbdm-01.zdv.uni-mainz.de/~mschaefer/hippie/hippie_current.txt", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "mint"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}]}, {"category": "Product", "description": "Current HIPPIE v2.4 interaction dataset in PSI-MI TAB 2.5 format, last updated April 9, 2026", "format": "psi_mi_mitab", "id": "hippie.current.mitab", "latest_version": "v2.4", "name": "HIPPIE Current PSI-MI TAB Dataset", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "hippie"}], "product_file_size": 257038149, "product_url": "https://cbdm-01.zdv.uni-mainz.de/~mschaefer/hippie/HIPPIE-current.mitab.txt", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "mint"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}]}, {"category": "Product", "compression": "gzip", "description": "PC v14 integrated BioPAX Level 3 unified model containing normalized pathway data, molecular interactions, cross-database entity mappings, and metadata-derived content from 26 datasource rows.", "format": "biopax", "id": "pathwaycommons.biopax", "name": "Integrated BioPAX Model", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_file_size": 1700903742, "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/pc-biopax.owl.gz", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}, {"category": "Product", "description": "Download directory for Pathway Commons PC v14 integrated pathway and molecular interaction datasets, including BioPAX, SIF, GMT, TXT, and JSON-LD products.", "format": "mixed", "id": "pathwaycommons.downloads", "name": "Pathway Commons Data Downloads", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}, {"category": "Product", "compression": "gzip", "description": "PC v14 Simple Interaction Format network file representing binary pairwise molecular relationships integrated from Pathway Commons upstream datasource rows.", "format": "sif", "id": "pathwaycommons.sif", "name": "SIF Network Format", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_file_size": 9810179, "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/pc-hgnc.sif.gz", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}, {"category": "Product", "compression": "gzip", "description": "PC v14 Gene Matrix Transposed gene sets for pathway enrichment analysis, derived from the integrated Pathway Commons pathway archive.", "id": "pathwaycommons.gmt", "name": "GMT Gene Set Format", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_file_size": 262513, "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/pc-hgnc.gmt.gz", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}, {"category": "Product", "compression": "gzip", "description": "PC v14 tab-delimited extended SIF node and edge file using HGNC-oriented identifiers for integrated Pathway Commons interactions.", "format": "txt", "id": "pathwaycommons.txt", "name": "Extended SIF TXT Format", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_file_size": 115608500, "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/pc-hgnc.txt.gz", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}], "publications": [{"authors": ["Bader GD", "Betel D", "Hogue CW"], "doi": "10.1093/nar/gkg056", "id": "doi:10.1093/nar/gkg056", "journal": "Nucleic Acids Res", "title": "BIND: the Biomolecular Interaction Network Database", "year": "2003"}], "synonyms": ["BIND"]}