Molecular Interactions Controlled Vocabulary
A structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions.
[{"category": "Individual", "contact_details": [{"contact_type": "email", "value": "luana.licata@gmail.com"}, {"contact_type": "github", "value": "luanalicata"}], "label": "Luana Licata", "orcid": "0000-0001-5084-9000"}]
[{"category": "OntologyProduct", "description": "Molecular Interactions Controlled Vocabulary in OWL format", "format": "owl", "id": "mi.owl", "name": "mi.owl", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "mi"}], "product_file_size": 248742, "product_url": "http://purl.obolibrary.org/obo/mi.owl"}, {"category": "OntologyProduct", "description": "Molecular Interactions Controlled Vocabulary in OBO format", "format": "obo", "id": "mi.obo", "name": "mi.obo", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "mi"}], "product_file_size": 169744, "product_url": "http://purl.obolibrary.org/obo/mi.obo"}, {"category": "GraphProduct", "description": "Turnkey neo4j distributions that deploy fully-indexed, standalone UBKG instances as neo4j graph databases, running in a Docker container. Requires UMLS API key to access.", "dump_format": "neo4j", "id": "ubkg.neo4j", "name": "UBKG Neo4j Docker Distribution", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "4dn"}, {"relation_type": "prov:hadPrimarySource", "source": "biomarker"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "clingen"}, {"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "connectivitymap"}, {"relation_type": "prov:hadPrimarySource", "source": "dct"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "edam"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "erccrbp"}, {"relation_type": "prov:hadPrimarySource", "source": "erccreg"}, {"relation_type": "prov:hadPrimarySource", "source": "faldo"}, {"relation_type": "prov:hadPrimarySource", "source": "gencode"}, {"relation_type": "prov:hadPrimarySource", "source": "glycocoo"}, {"relation_type": "prov:hadPrimarySource", "source": "glycordf"}, {"relation_type": "prov:hadPrimarySource", "source": "gtex"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "hra"}, {"relation_type": "prov:hadPrimarySource", "source": "hsapdv"}, {"relation_type": "prov:hadPrimarySource", "source": "hubmap"}, {"relation_type": "prov:hadPrimarySource", "source": "icd10"}, {"relation_type": "prov:hadPrimarySource", "source": "kidsfirst"}, {"relation_type": "prov:hadPrimarySource", "source": "lincs"}, {"relation_type": "prov:hadPrimarySource", "source": "loinc"}, {"relation_type": "prov:hadPrimarySource", "source": "mi"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "motrpac"}, {"relation_type": "prov:hadPrimarySource", "source": "mp"}, {"relation_type": "prov:hadPrimarySource", "source": "msigdb"}, {"relation_type": "prov:hadPrimarySource", "source": "mw"}, {"relation_type": "prov:hadPrimarySource", "source": "npo"}, {"relation_type": "prov:hadPrimarySource", "source": "obi"}, {"relation_type": "prov:hadPrimarySource", "source": "obib"}, {"relation_type": "prov:hadPrimarySource", "source": "opentargets"}, {"relation_type": "prov:hadPrimarySource", "source": "ordo"}, {"relation_type": "prov:hadPrimarySource", "source": "pato"}, {"relation_type": "prov:hadPrimarySource", "source": "pgo"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "sbo"}, {"relation_type": "prov:hadPrimarySource", "source": "sckan"}, {"relation_type": "prov:hadPrimarySource", "source": "sennet"}, {"relation_type": "prov:hadPrimarySource", "source": "snomedct"}, {"relation_type": "prov:hadPrimarySource", "source": "stellar"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "ubkg"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "uo"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}], "product_url": "https://ubkg-downloads.xconsortia.org/"}, {"category": "GraphProduct", "description": "Ontology CSV files that can be imported into a neo4j instance to create a UBKG database. Requires UMLS API key to access.", "format": "csv", "id": "ubkg.csv", "name": "UBKG Ontology CSV Files", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "4dn"}, {"relation_type": "prov:hadPrimarySource", "source": "biomarker"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "clingen"}, {"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "connectivitymap"}, {"relation_type": "prov:hadPrimarySource", "source": "dct"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "edam"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "erccrbp"}, {"relation_type": "prov:hadPrimarySource", "source": "erccreg"}, {"relation_type": "prov:hadPrimarySource", "source": "faldo"}, {"relation_type": "prov:hadPrimarySource", "source": "gencode"}, {"relation_type": "prov:hadPrimarySource", "source": "glycocoo"}, {"relation_type": "prov:hadPrimarySource", "source": "glycordf"}, {"relation_type": "prov:hadPrimarySource", "source": "gtex"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "hra"}, {"relation_type": "prov:hadPrimarySource", "source": "hsapdv"}, {"relation_type": "prov:hadPrimarySource", "source": "hubmap"}, {"relation_type": "prov:hadPrimarySource", "source": "icd10"}, {"relation_type": "prov:hadPrimarySource", "source": "kidsfirst"}, {"relation_type": "prov:hadPrimarySource", "source": "lincs"}, {"relation_type": "prov:hadPrimarySource", "source": "loinc"}, {"relation_type": "prov:hadPrimarySource", "source": "mi"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "motrpac"}, {"relation_type": "prov:hadPrimarySource", "source": "mp"}, {"relation_type": "prov:hadPrimarySource", "source": "msigdb"}, {"relation_type": "prov:hadPrimarySource", "source": "mw"}, {"relation_type": "prov:hadPrimarySource", "source": "npo"}, {"relation_type": "prov:hadPrimarySource", "source": "obi"}, {"relation_type": "prov:hadPrimarySource", "source": "obib"}, {"relation_type": "prov:hadPrimarySource", "source": "opentargets"}, {"relation_type": "prov:hadPrimarySource", "source": "ordo"}, {"relation_type": "prov:hadPrimarySource", "source": "pato"}, {"relation_type": "prov:hadPrimarySource", "source": "pgo"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "sbo"}, {"relation_type": "prov:hadPrimarySource", "source": "sckan"}, {"relation_type": "prov:hadPrimarySource", "source": "sennet"}, {"relation_type": "prov:hadPrimarySource", "source": "snomedct"}, {"relation_type": "prov:hadPrimarySource", "source": "stellar"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "ubkg"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "uo"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}], "product_url": "https://ubkg-downloads.xconsortia.org/"}, {"category": "GraphProduct", "description": "Neo4j database dump of the Clinical Knowledge Graph and additional relationships", "dump_format": "neo4j", "edge_count": 220000000, "format": "mixed", "id": "cancer-genome-interpreter.clinicalkg.graph", "name": "CKG Graph Dump", "node_count": 16000000, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "stitch"}, {"relation_type": "prov:hadPrimarySource", "source": "smpdb"}, {"relation_type": "prov:hadPrimarySource", "source": "signor"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "phosphositeplus"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "oncokb"}, {"relation_type": "prov:hadPrimarySource", "source": "mutationds"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "foodb"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "dgidb"}, {"relation_type": "prov:hadPrimarySource", "source": "corum"}, {"relation_type": "prov:hadPrimarySource", "source": "cancer-genome-interpreter"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "bto"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "snomedct"}, {"relation_type": "prov:hadPrimarySource", "source": "mod"}, {"relation_type": "prov:hadPrimarySource", "source": "mi"}, {"relation_type": "prov:hadPrimarySource", "source": "ms"}, {"relation_type": "prov:hadPrimarySource", "source": "uo"}], "product_url": "https://data.mendeley.com/datasets/mrcf7f4tc2/1"}, {"category": "GraphProduct", "description": "Neo4j database dump of the Clinical Knowledge Graph and additional relationships", "dump_format": "neo4j", "edge_count": 220000000, "format": "mixed", "id": "clinicalkg.graph", "name": "CKG Graph Dump", "node_count": 16000000, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bto"}, {"relation_type": "prov:hadPrimarySource", "source": "cancer-genome-interpreter"}, {"relation_type": "prov:hadPrimarySource", "source": "clinicalkg"}, {"relation_type": "prov:hadPrimarySource", "source": "corum"}, {"relation_type": "prov:hadPrimarySource", "source": "dgidb"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "foodb"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "mi"}, {"relation_type": "prov:hadPrimarySource", "source": "mod"}, {"relation_type": "prov:hadPrimarySource", "source": "ms"}, {"relation_type": "prov:hadPrimarySource", "source": "mutationds"}, {"relation_type": "prov:hadPrimarySource", "source": "oncokb"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "phosphositeplus"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "signor"}, {"relation_type": "prov:hadPrimarySource", "source": "smpdb"}, {"relation_type": "prov:hadPrimarySource", "source": "snomedct"}, {"relation_type": "prov:hadPrimarySource", "source": "stitch"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "uo"}], "product_url": "https://data.mendeley.com/datasets/mrcf7f4tc2/1"}, {"category": "GraphProduct", "description": "Graph database dump and additional relationship files for the Clinical Knowledge Graph.", "format": "neo4j", "id": "ckg.graph", "latest_version": "1", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC BY 4.0"}, "name": "CKG Graph Database Dump", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bto"}, {"relation_type": "prov:hadPrimarySource", "source": "cancer-genome-interpreter"}, {"relation_type": "prov:hadPrimarySource", "source": "ckg"}, {"relation_type": "prov:hadPrimarySource", "source": "corum"}, {"relation_type": "prov:hadPrimarySource", "source": "dgidb"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "foodb"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "mi"}, {"relation_type": "prov:hadPrimarySource", "source": "mod"}, {"relation_type": "prov:hadPrimarySource", "source": "ms"}, {"relation_type": "prov:hadPrimarySource", "source": "mutationds"}, {"relation_type": "prov:hadPrimarySource", "source": "oncokb"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "phosphositeplus"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "signor"}, {"relation_type": "prov:hadPrimarySource", "source": "smpdb"}, {"relation_type": "prov:hadPrimarySource", "source": "snomedct"}, {"relation_type": "prov:hadPrimarySource", "source": "stitch"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "uo"}], "product_url": "https://data.mendeley.com/datasets/mrcf7f4tc2/1"}, {"category": "Product", "description": "Complete MINT dataset in PSI-MI MITAB 2.7 format accessible via PSICQUIC web service.", "format": "psi_mi_mitab", "id": "mint.mitab.all", "name": "MINT MITAB Full Dataset", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "mint"}], "product_url": "http://www.ebi.ac.uk/Tools/webservices/psicquic/mint/webservices/current/search/query/*", "secondary_source": [{"relation_type": "prov:wasInfluencedBy", "source": "imex"}, {"relation_type": "prov:wasInfluencedBy", "source": "intact"}, {"relation_type": "prov:used", "source": "mi"}], "warnings": ["File was not able to be retrieved when checked on 2026-06-05: No Content-Length header found", "File was not able to be retrieved when checked on 2026-03-30_ No Content-Length header found", "File was not able to be retrieved when checked on 2026-03-08_ HTTP 500 error when accessing file", "File was not able to be retrieved when checked on 2026-02-18_ Timeout connecting to URL"]}, {"category": "Product", "description": "Human protein interactions from MINT in PSI-MI MITAB format for Homo sapiens (NCBITaxon 9606).", "format": "psi_mi_mitab", "id": "mint.mitab.human", "name": "MINT Human Interactions", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "mint"}], "product_url": "http://www.ebi.ac.uk/Tools/webservices/psicquic/mint/webservices/current/search/query/species:human", "secondary_source": [{"relation_type": "prov:wasInfluencedBy", "source": "imex"}, {"relation_type": "prov:wasInfluencedBy", "source": "intact"}, {"relation_type": "prov:used", "source": "mi"}], "warnings": ["File was not able to be retrieved when checked on 2026-06-05: No Content-Length header found", "File was not able to be retrieved when checked on 2026-03-30_ No Content-Length header found", "File was not able to be retrieved when checked on 2026-03-08_ HTTP 500 error when accessing file", "File was not able to be retrieved when checked on 2025-12-04_ Timeout connecting to URL"]}, {"category": "Product", "description": "Mouse protein interactions from MINT in PSI-MI MITAB format for Mus musculus (NCBITaxon 10090).", "format": "psi_mi_mitab", "id": "mint.mitab.mouse", "name": "MINT Mouse Interactions", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "mint"}], "product_url": "http://www.ebi.ac.uk/Tools/webservices/psicquic/mint/webservices/current/search/query/species:mouse", "secondary_source": [{"relation_type": "prov:wasInfluencedBy", "source": "imex"}, {"relation_type": "prov:wasInfluencedBy", "source": "intact"}, {"relation_type": "prov:used", "source": "mi"}], "warnings": ["File was not able to be retrieved when checked on 2026-06-05: No Content-Length header found", "File was not able to be retrieved when checked on 2026-03-30_ No Content-Length header found", "File was not able to be retrieved when checked on 2026-03-08_ HTTP 500 error when accessing file", "File was not able to be retrieved when checked on 2026-01-06_ Timeout connecting to URL"]}, {"category": "Product", "description": "Drosophila melanogaster protein interactions from MINT in PSI-MI MITAB format.", "format": "psi_mi_mitab", "id": "mint.mitab.drosophila", "name": "MINT Drosophila Interactions", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "mint"}], "product_url": "http://www.ebi.ac.uk/Tools/webservices/psicquic/mint/webservices/current/search/query/species:fruit%20fly", "secondary_source": [{"relation_type": "prov:wasInfluencedBy", "source": "imex"}, {"relation_type": "prov:wasInfluencedBy", "source": "intact"}, {"relation_type": "prov:used", "source": "mi"}], "warnings": ["File was not able to be retrieved when checked on 2026-06-05: No Content-Length header found", "PSICQUIC query endpoints may stream results without a stable Content-Length header."]}, {"category": "Product", "description": "Saccharomyces cerevisiae protein interactions from MINT in PSI-MI MITAB format.", "format": "psi_mi_mitab", "id": "mint.mitab.yeast", "name": "MINT Yeast Interactions", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "mint"}], "product_url": "http://www.ebi.ac.uk/Tools/webservices/psicquic/mint/webservices/current/search/query/species:yeast", "secondary_source": [{"relation_type": "prov:wasInfluencedBy", "source": "imex"}, {"relation_type": "prov:wasInfluencedBy", "source": "intact"}, {"relation_type": "prov:used", "source": "mi"}], "warnings": ["File was not able to be retrieved when checked on 2026-06-05: No Content-Length header found", "PSICQUIC query endpoints may stream results without a stable Content-Length header."]}, {"category": "ProgrammingInterface", "description": "PSICQUIC SOAP and REST web services for programmatic access to MINT data using Molecular Interactions Query Language (MIQL).", "format": "http", "id": "mint.psicquic", "name": "MINT PSICQUIC Web Service", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "mint"}], "product_url": "http://www.ebi.ac.uk/Tools/webservices/psicquic/mint/webservices/", "secondary_source": [{"relation_type": "prov:wasInfluencedBy", "source": "imex"}, {"relation_type": "prov:wasInfluencedBy", "source": "intact"}, {"relation_type": "prov:used", "source": "mi"}]}]
{"activity_status": "active", "category": "Ontology", "collection": ["obo-foundry"], "contacts": [{"category": "Individual", "contact_details": [{"contact_type": "email", "value": "luana.licata@gmail.com"}, {"contact_type": "github", "value": "luanalicata"}], "label": "Luana Licata", "orcid": "0000-0001-5084-9000"}], "creation_date": "2025-06-04T00:00:00Z", "description": "A structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions.", "domains": ["biomedical", "general"], "homepage_url": "https://github.com/HUPO-PSI/psi-mi-CV", "id": "mi", "infores_id": "mi", "last_modified_date": "2026-06-05T00:00:00Z", "layout": "resource_detail", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC BY 4.0", "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png"}, "name": "Molecular Interactions Controlled Vocabulary", "products": [{"category": "OntologyProduct", "description": "Molecular Interactions Controlled Vocabulary in OWL format", "format": "owl", "id": "mi.owl", "name": "mi.owl", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "mi"}], "product_file_size": 248742, "product_url": "http://purl.obolibrary.org/obo/mi.owl"}, {"category": "OntologyProduct", "description": "Molecular Interactions Controlled Vocabulary in OBO format", "format": "obo", "id": "mi.obo", "name": "mi.obo", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "mi"}], "product_file_size": 169744, "product_url": "http://purl.obolibrary.org/obo/mi.obo"}, {"category": "GraphProduct", "description": "Turnkey neo4j distributions that deploy fully-indexed, standalone UBKG instances as neo4j graph databases, running in a Docker container. Requires UMLS API key to access.", "dump_format": "neo4j", "id": "ubkg.neo4j", "name": "UBKG Neo4j Docker Distribution", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "4dn"}, {"relation_type": "prov:hadPrimarySource", "source": "biomarker"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "clingen"}, {"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "connectivitymap"}, {"relation_type": "prov:hadPrimarySource", "source": "dct"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "edam"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "erccrbp"}, {"relation_type": "prov:hadPrimarySource", "source": "erccreg"}, {"relation_type": "prov:hadPrimarySource", "source": "faldo"}, {"relation_type": "prov:hadPrimarySource", "source": "gencode"}, {"relation_type": "prov:hadPrimarySource", "source": "glycocoo"}, {"relation_type": "prov:hadPrimarySource", "source": "glycordf"}, {"relation_type": "prov:hadPrimarySource", "source": "gtex"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "hra"}, {"relation_type": "prov:hadPrimarySource", "source": "hsapdv"}, {"relation_type": "prov:hadPrimarySource", "source": "hubmap"}, {"relation_type": "prov:hadPrimarySource", "source": "icd10"}, {"relation_type": "prov:hadPrimarySource", "source": "kidsfirst"}, {"relation_type": "prov:hadPrimarySource", "source": "lincs"}, {"relation_type": "prov:hadPrimarySource", "source": "loinc"}, {"relation_type": "prov:hadPrimarySource", "source": "mi"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "motrpac"}, {"relation_type": "prov:hadPrimarySource", "source": "mp"}, {"relation_type": "prov:hadPrimarySource", "source": "msigdb"}, {"relation_type": "prov:hadPrimarySource", "source": "mw"}, {"relation_type": "prov:hadPrimarySource", "source": "npo"}, {"relation_type": "prov:hadPrimarySource", "source": "obi"}, {"relation_type": "prov:hadPrimarySource", "source": "obib"}, {"relation_type": "prov:hadPrimarySource", "source": "opentargets"}, {"relation_type": "prov:hadPrimarySource", "source": "ordo"}, {"relation_type": "prov:hadPrimarySource", "source": "pato"}, {"relation_type": "prov:hadPrimarySource", "source": "pgo"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "sbo"}, {"relation_type": "prov:hadPrimarySource", "source": "sckan"}, {"relation_type": "prov:hadPrimarySource", "source": "sennet"}, {"relation_type": "prov:hadPrimarySource", "source": "snomedct"}, {"relation_type": "prov:hadPrimarySource", "source": "stellar"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "ubkg"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "uo"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}], "product_url": "https://ubkg-downloads.xconsortia.org/"}, {"category": "GraphProduct", "description": "Ontology CSV files that can be imported into a neo4j instance to create a UBKG database. Requires UMLS API key to access.", "format": "csv", "id": "ubkg.csv", "name": "UBKG Ontology CSV Files", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "4dn"}, {"relation_type": "prov:hadPrimarySource", "source": "biomarker"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "clingen"}, {"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "connectivitymap"}, {"relation_type": "prov:hadPrimarySource", "source": "dct"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "edam"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "erccrbp"}, {"relation_type": "prov:hadPrimarySource", "source": "erccreg"}, {"relation_type": "prov:hadPrimarySource", "source": "faldo"}, {"relation_type": "prov:hadPrimarySource", "source": "gencode"}, {"relation_type": "prov:hadPrimarySource", "source": "glycocoo"}, {"relation_type": "prov:hadPrimarySource", "source": "glycordf"}, {"relation_type": "prov:hadPrimarySource", "source": "gtex"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "hra"}, {"relation_type": "prov:hadPrimarySource", "source": "hsapdv"}, {"relation_type": "prov:hadPrimarySource", "source": "hubmap"}, {"relation_type": "prov:hadPrimarySource", "source": "icd10"}, {"relation_type": "prov:hadPrimarySource", "source": "kidsfirst"}, {"relation_type": "prov:hadPrimarySource", "source": "lincs"}, {"relation_type": "prov:hadPrimarySource", "source": "loinc"}, {"relation_type": "prov:hadPrimarySource", "source": "mi"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "motrpac"}, {"relation_type": "prov:hadPrimarySource", "source": "mp"}, {"relation_type": "prov:hadPrimarySource", "source": "msigdb"}, {"relation_type": "prov:hadPrimarySource", "source": "mw"}, {"relation_type": "prov:hadPrimarySource", "source": "npo"}, {"relation_type": "prov:hadPrimarySource", "source": "obi"}, {"relation_type": "prov:hadPrimarySource", "source": "obib"}, {"relation_type": "prov:hadPrimarySource", "source": "opentargets"}, {"relation_type": "prov:hadPrimarySource", "source": "ordo"}, {"relation_type": "prov:hadPrimarySource", "source": "pato"}, {"relation_type": "prov:hadPrimarySource", "source": "pgo"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "sbo"}, {"relation_type": "prov:hadPrimarySource", "source": "sckan"}, {"relation_type": "prov:hadPrimarySource", "source": "sennet"}, {"relation_type": "prov:hadPrimarySource", "source": "snomedct"}, {"relation_type": "prov:hadPrimarySource", "source": "stellar"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "ubkg"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "uo"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}], "product_url": "https://ubkg-downloads.xconsortia.org/"}, {"category": "GraphProduct", "description": "Neo4j database dump of the Clinical Knowledge Graph and additional relationships", "dump_format": "neo4j", "edge_count": 220000000, "format": "mixed", "id": "cancer-genome-interpreter.clinicalkg.graph", "name": "CKG Graph Dump", "node_count": 16000000, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "stitch"}, {"relation_type": "prov:hadPrimarySource", "source": "smpdb"}, {"relation_type": "prov:hadPrimarySource", "source": "signor"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "phosphositeplus"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "oncokb"}, {"relation_type": "prov:hadPrimarySource", "source": "mutationds"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "foodb"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "dgidb"}, {"relation_type": "prov:hadPrimarySource", "source": "corum"}, {"relation_type": "prov:hadPrimarySource", "source": "cancer-genome-interpreter"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "bto"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "snomedct"}, {"relation_type": "prov:hadPrimarySource", "source": "mod"}, {"relation_type": "prov:hadPrimarySource", "source": "mi"}, {"relation_type": "prov:hadPrimarySource", "source": "ms"}, {"relation_type": "prov:hadPrimarySource", "source": "uo"}], "product_url": "https://data.mendeley.com/datasets/mrcf7f4tc2/1"}, {"category": "GraphProduct", "description": "Neo4j database dump of the Clinical Knowledge Graph and additional relationships", "dump_format": "neo4j", "edge_count": 220000000, "format": "mixed", "id": "clinicalkg.graph", "name": "CKG Graph Dump", "node_count": 16000000, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bto"}, {"relation_type": "prov:hadPrimarySource", "source": "cancer-genome-interpreter"}, {"relation_type": "prov:hadPrimarySource", "source": "clinicalkg"}, {"relation_type": "prov:hadPrimarySource", "source": "corum"}, {"relation_type": "prov:hadPrimarySource", "source": "dgidb"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "foodb"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "mi"}, {"relation_type": "prov:hadPrimarySource", "source": "mod"}, {"relation_type": "prov:hadPrimarySource", "source": "ms"}, {"relation_type": "prov:hadPrimarySource", "source": "mutationds"}, {"relation_type": "prov:hadPrimarySource", "source": "oncokb"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "phosphositeplus"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "signor"}, {"relation_type": "prov:hadPrimarySource", "source": "smpdb"}, {"relation_type": "prov:hadPrimarySource", "source": "snomedct"}, {"relation_type": "prov:hadPrimarySource", "source": "stitch"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "uo"}], "product_url": "https://data.mendeley.com/datasets/mrcf7f4tc2/1"}, {"category": "GraphProduct", "description": "Graph database dump and additional relationship files for the Clinical Knowledge Graph.", "format": "neo4j", "id": "ckg.graph", "latest_version": "1", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC BY 4.0"}, "name": "CKG Graph Database Dump", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bto"}, {"relation_type": "prov:hadPrimarySource", "source": "cancer-genome-interpreter"}, {"relation_type": "prov:hadPrimarySource", "source": "ckg"}, {"relation_type": "prov:hadPrimarySource", "source": "corum"}, {"relation_type": "prov:hadPrimarySource", "source": "dgidb"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "foodb"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "mi"}, {"relation_type": "prov:hadPrimarySource", "source": "mod"}, {"relation_type": "prov:hadPrimarySource", "source": "ms"}, {"relation_type": "prov:hadPrimarySource", "source": "mutationds"}, {"relation_type": "prov:hadPrimarySource", "source": "oncokb"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "phosphositeplus"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "signor"}, {"relation_type": "prov:hadPrimarySource", "source": "smpdb"}, {"relation_type": "prov:hadPrimarySource", "source": "snomedct"}, {"relation_type": "prov:hadPrimarySource", "source": "stitch"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "uo"}], "product_url": "https://data.mendeley.com/datasets/mrcf7f4tc2/1"}, {"category": "Product", "description": "Complete MINT dataset in PSI-MI MITAB 2.7 format accessible via PSICQUIC web service.", "format": "psi_mi_mitab", "id": "mint.mitab.all", "name": "MINT MITAB Full Dataset", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "mint"}], "product_url": "http://www.ebi.ac.uk/Tools/webservices/psicquic/mint/webservices/current/search/query/*", "secondary_source": [{"relation_type": "prov:wasInfluencedBy", "source": "imex"}, {"relation_type": "prov:wasInfluencedBy", "source": "intact"}, {"relation_type": "prov:used", "source": "mi"}], "warnings": ["File was not able to be retrieved when checked on 2026-06-05: No Content-Length header found", "File was not able to be retrieved when checked on 2026-03-30_ No Content-Length header found", "File was not able to be retrieved when checked on 2026-03-08_ HTTP 500 error when accessing file", "File was not able to be retrieved when checked on 2026-02-18_ Timeout connecting to URL"]}, {"category": "Product", "description": "Human protein interactions from MINT in PSI-MI MITAB format for Homo sapiens (NCBITaxon 9606).", "format": "psi_mi_mitab", "id": "mint.mitab.human", "name": "MINT Human Interactions", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "mint"}], "product_url": "http://www.ebi.ac.uk/Tools/webservices/psicquic/mint/webservices/current/search/query/species:human", "secondary_source": [{"relation_type": "prov:wasInfluencedBy", "source": "imex"}, {"relation_type": "prov:wasInfluencedBy", "source": "intact"}, {"relation_type": "prov:used", "source": "mi"}], "warnings": ["File was not able to be retrieved when checked on 2026-06-05: No Content-Length header found", "File was not able to be retrieved when checked on 2026-03-30_ No Content-Length header found", "File was not able to be retrieved when checked on 2026-03-08_ HTTP 500 error when accessing file", "File was not able to be retrieved when checked on 2025-12-04_ Timeout connecting to URL"]}, {"category": "Product", "description": "Mouse protein interactions from MINT in PSI-MI MITAB format for Mus musculus (NCBITaxon 10090).", "format": "psi_mi_mitab", "id": "mint.mitab.mouse", "name": "MINT Mouse Interactions", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "mint"}], "product_url": "http://www.ebi.ac.uk/Tools/webservices/psicquic/mint/webservices/current/search/query/species:mouse", "secondary_source": [{"relation_type": "prov:wasInfluencedBy", "source": "imex"}, {"relation_type": "prov:wasInfluencedBy", "source": "intact"}, {"relation_type": "prov:used", "source": "mi"}], "warnings": ["File was not able to be retrieved when checked on 2026-06-05: No Content-Length header found", "File was not able to be retrieved when checked on 2026-03-30_ No Content-Length header found", "File was not able to be retrieved when checked on 2026-03-08_ HTTP 500 error when accessing file", "File was not able to be retrieved when checked on 2026-01-06_ Timeout connecting to URL"]}, {"category": "Product", "description": "Drosophila melanogaster protein interactions from MINT in PSI-MI MITAB format.", "format": "psi_mi_mitab", "id": "mint.mitab.drosophila", "name": "MINT Drosophila Interactions", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "mint"}], "product_url": "http://www.ebi.ac.uk/Tools/webservices/psicquic/mint/webservices/current/search/query/species:fruit%20fly", "secondary_source": [{"relation_type": "prov:wasInfluencedBy", "source": "imex"}, {"relation_type": "prov:wasInfluencedBy", "source": "intact"}, {"relation_type": "prov:used", "source": "mi"}], "warnings": ["File was not able to be retrieved when checked on 2026-06-05: No Content-Length header found", "PSICQUIC query endpoints may stream results without a stable Content-Length header."]}, {"category": "Product", "description": "Saccharomyces cerevisiae protein interactions from MINT in PSI-MI MITAB format.", "format": "psi_mi_mitab", "id": "mint.mitab.yeast", "name": "MINT Yeast Interactions", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "mint"}], "product_url": "http://www.ebi.ac.uk/Tools/webservices/psicquic/mint/webservices/current/search/query/species:yeast", "secondary_source": [{"relation_type": "prov:wasInfluencedBy", "source": "imex"}, {"relation_type": "prov:wasInfluencedBy", "source": "intact"}, {"relation_type": "prov:used", "source": "mi"}], "warnings": ["File was not able to be retrieved when checked on 2026-06-05: No Content-Length header found", "PSICQUIC query endpoints may stream results without a stable Content-Length header."]}, {"category": "ProgrammingInterface", "description": "PSICQUIC SOAP and REST web services for programmatic access to MINT data using Molecular Interactions Query Language (MIQL).", "format": "http", "id": "mint.psicquic", "name": "MINT PSICQUIC Web Service", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "mint"}], "product_url": "http://www.ebi.ac.uk/Tools/webservices/psicquic/mint/webservices/", "secondary_source": [{"relation_type": "prov:wasInfluencedBy", "source": "imex"}, {"relation_type": "prov:wasInfluencedBy", "source": "intact"}, {"relation_type": "prov:used", "source": "mi"}]}], "publications": [], "repository": "https://github.com/HUPO-PSI/psi-mi-CV"}