P3DB
P3DB, the Plant Protein Phosphorylation Database, is a plant phosphoproteomics resource that collects phosphorylation sites, phosphopeptides, kinases, organisms, and study datasets with search and BLAST tools.
[{"category": "Organization", "contact_details": [{"contact_type": "url", "value": "https://www.p3db.org/"}], "label": "Plant Protein Phosphorylation Database"}]
[{"category": "GraphicalInterface", "description": "P3DB V5.0 web portal for searching plant phosphorylation peptides and sites, browsing kinases and organisms, and using PTM peptide BLAST tools.", "id": "p3db.portal", "name": "P3DB Web Portal", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "p3db"}], "product_url": "https://www.p3db.org/"}, {"category": "Product", "description": "P3DB study and organism datasets for plant protein phosphorylation, including phosphorylation sites, peptides, substrate proteins, and associated study metadata.", "format": "mixed", "id": "p3db.datasets", "name": "P3DB Plant Phosphorylation Datasets", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "p3db"}], "product_url": "https://www.p3db.org/"}, {"category": "ProcessProduct", "description": "P3DB PTM peptide BLAST and search tools for querying plant phosphopeptides and phosphorylation sites by sequence or accession.", "id": "p3db.ptm-search", "name": "P3DB PTM Search and BLAST Tools", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "p3db"}], "product_url": "https://www.p3db.org/"}, {"category": "GraphProduct", "description": "Current iPTMnet PTM record table with PTM type, source, UniProt protein, organism, site, enzyme, relation identifiers, and publication evidence.", "format": "tsv", "id": "iptmnet.ptm", "license": {"id": "https://creativecommons.org/licenses/by-nc-sa/4.0/", "label": "CC BY-NC-SA 4.0"}, "name": "iPTMnet PTM Table", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "iptmnet"}], "product_file_size": 44116546, "product_url": "https://research.bioinformatics.udel.edu/iptmnet_data/files/current/ptm.txt", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "dbptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsno"}, {"relation_type": "prov:wasDerivedFrom", "source": "efip"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "nextprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "p3db"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphoelm"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphat"}, {"relation_type": "prov:wasDerivedFrom", "source": "pombase"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubtator"}, {"relation_type": "prov:wasDerivedFrom", "source": "rlims-p"}, {"relation_type": "prov:wasDerivedFrom", "source": "signor"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}]}]
{"activity_status": "active", "category": "DataSource", "collection": ["ber"], "contacts": [{"category": "Organization", "contact_details": [{"contact_type": "url", "value": "https://www.p3db.org/"}], "label": "Plant Protein Phosphorylation Database"}], "creation_date": "2026-06-02T00:00:00Z", "description": "P3DB, the Plant Protein Phosphorylation Database, is a plant phosphoproteomics resource that collects phosphorylation sites, phosphopeptides, kinases, organisms, and study datasets with search and BLAST tools.", "domains": ["agriculture", "proteomics", "biological systems"], "homepage_url": "https://www.p3db.org/", "id": "p3db", "last_modified_date": "2026-06-12T00:00:00Z", "layout": "resource_detail", "name": "P3DB", "products": [{"category": "GraphicalInterface", "description": "P3DB V5.0 web portal for searching plant phosphorylation peptides and sites, browsing kinases and organisms, and using PTM peptide BLAST tools.", "id": "p3db.portal", "name": "P3DB Web Portal", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "p3db"}], "product_url": "https://www.p3db.org/"}, {"category": "Product", "description": "P3DB study and organism datasets for plant protein phosphorylation, including phosphorylation sites, peptides, substrate proteins, and associated study metadata.", "format": "mixed", "id": "p3db.datasets", "name": "P3DB Plant Phosphorylation Datasets", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "p3db"}], "product_url": "https://www.p3db.org/"}, {"category": "ProcessProduct", "description": "P3DB PTM peptide BLAST and search tools for querying plant phosphopeptides and phosphorylation sites by sequence or accession.", "id": "p3db.ptm-search", "name": "P3DB PTM Search and BLAST Tools", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "p3db"}], "product_url": "https://www.p3db.org/"}, {"category": "GraphProduct", "description": "Current iPTMnet PTM record table with PTM type, source, UniProt protein, organism, site, enzyme, relation identifiers, and publication evidence.", "format": "tsv", "id": "iptmnet.ptm", "license": {"id": "https://creativecommons.org/licenses/by-nc-sa/4.0/", "label": "CC BY-NC-SA 4.0"}, "name": "iPTMnet PTM Table", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "iptmnet"}], "product_file_size": 44116546, "product_url": "https://research.bioinformatics.udel.edu/iptmnet_data/files/current/ptm.txt", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "dbptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsno"}, {"relation_type": "prov:wasDerivedFrom", "source": "efip"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "nextprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "p3db"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphoelm"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphat"}, {"relation_type": "prov:wasDerivedFrom", "source": "pombase"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubtator"}, {"relation_type": "prov:wasDerivedFrom", "source": "rlims-p"}, {"relation_type": "prov:wasDerivedFrom", "source": "signor"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}]}], "publications": [{"authors": ["Qiuming Yao", "Curtis Bollinger", "Jianjiong Gao", "Dong Xu", "Jay J. Thelen"], "doi": "10.3389/fpls.2012.00206", "id": "doi:10.3389/fpls.2012.00206", "journal": "Frontiers in Plant Science", "preferred": true, "title": "P3DB: An Integrated Database for Plant Protein Phosphorylation", "year": "2012"}], "synonyms": ["Plant Protein Phosphorylation Database"], "taxon": ["NCBITaxon:33090"]}