name: Harmonizome-KG
description: Harmonizome-KG is a comprehensive knowledge graph derived from the Harmonizome database, integrating functional genomics data across multiple biological domains to connect genes with their functional annotations, regulatory relationships, protein interactions, and phenotypic associations in a unified graph structure.
contacts: [{"category": "Organization", "contact_details": [{"contact_type": "email", "value": "avi.maayan@mssm.edu"}, {"contact_type": "url", "value": "https://labs.icahn.mssm.edu/maayanlab/"}], "label": "Ma'ayan Laboratory"}]
products: [{"category": "GraphicalInterface", "description": "Interactive web interface for exploring the Harmonizome knowledge graph with gene-centric network visualization", "format": "http", "id": "harmonizome-kg.portal", "name": "Harmonizome-KG Explorer", "product_url": "https://maayanlab.cloud/harmonizome-kg/"}, {"category": "ProgrammingInterface", "description": "RESTful API for programmatic access to Harmonizome functional genomics knowledge graph", "format": "http", "id": "harmonizome-kg.api", "name": "Harmonizome-KG API", "product_url": "https://maayanlab.cloud/harmonizome-kg/api/"}, {"category": "GraphProduct", "description": "Neo4j database containing integrated functional genomics data with genes, proteins, pathways, diseases, and regulatory relationships", "dump_format": "neo4j", "format": "neo4j", "id": "harmonizome-kg.graph", "name": "Harmonizome-KG Neo4j Database"}]
raw_data: {"activity_status": "active", "category": "KnowledgeGraph", "contacts": [{"category": "Organization", "contact_details": [{"contact_type": "email", "value": "avi.maayan@mssm.edu"}, {"contact_type": "url", "value": "https://labs.icahn.mssm.edu/maayanlab/"}], "label": "Ma'ayan Laboratory"}], "creation_date": "2025-09-23T00:00:00Z", "description": "Harmonizome-KG is a comprehensive knowledge graph derived from the Harmonizome database, integrating functional genomics data across multiple biological domains to connect genes with their functional annotations, regulatory relationships, protein interactions, and phenotypic associations in a unified graph structure.", "domains": ["biomedical", "genomics", "systems biology", "biological systems"], "homepage_url": "https://maayanlab.cloud/harmonizome-kg/", "id": "harmonizome-kg", "last_modified_date": "2025-09-23T00:00:00Z", "layout": "resource_detail", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC BY 4.0", "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png"}, "name": "Harmonizome-KG", "products": [{"category": "GraphicalInterface", "description": "Interactive web interface for exploring the Harmonizome knowledge graph with gene-centric network visualization", "format": "http", "id": "harmonizome-kg.portal", "name": "Harmonizome-KG Explorer", "product_url": "https://maayanlab.cloud/harmonizome-kg/"}, {"category": "ProgrammingInterface", "description": "RESTful API for programmatic access to Harmonizome functional genomics knowledge graph", "format": "http", "id": "harmonizome-kg.api", "name": "Harmonizome-KG API", "product_url": "https://maayanlab.cloud/harmonizome-kg/api/"}, {"category": "GraphProduct", "description": "Neo4j database containing integrated functional genomics data with genes, proteins, pathways, diseases, and regulatory relationships", "dump_format": "neo4j", "format": "neo4j", "id": "harmonizome-kg.graph", "name": "Harmonizome-KG Neo4j Database"}], "publications": [{"authors": ["Rouillard AD", "Gundersen GW", "Fernandez NF", "Wang Z", "Monteiro CD", "McDermott MG", "Ma'ayan A"], "id": "doi:10.1093/database/baw100", "journal": "Database", "preferred": true, "title": "The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins", "year": "2016"}], "repository": "https://github.com/MaayanLab/harmonizome-kg", "tags": ["translator"]}