dbPTM
dbPTM is an integrated protein post-translational modification resource that curates experimentally verified PTM sites, literature evidence, proteomic datasets, regulatory networks, and disease-associated PTM annotations.
[{"category": "Organization", "contact_details": [{"contact_type": "url", "value": "https://biomics.lab.nycu.edu.tw/dbPTM/"}], "label": "dbPTM Team"}]
[{"category": "GraphicalInterface", "description": "dbPTM 2025 web portal for searching proteins, browsing PTM general information, and analyzing disease-associated PTMs, PTM crosstalk, drug-binding-associated PTM sites, and kinase activity profiles.", "id": "dbptm.portal", "name": "dbPTM Web Portal", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "dbptm"}], "product_url": "https://biomics.lab.nycu.edu.tw/dbPTM/"}, {"category": "Product", "description": "dbPTM downloads for experimental and putative PTM sites, benchmark datasets, and cancer proteomics datasets, with PTM records mapped to UniProtKB protein entries and linked to literature evidence.", "format": "tsv", "id": "dbptm.downloads", "name": "dbPTM Download Datasets", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "dbptm"}], "product_url": "https://biomics.lab.nycu.edu.tw/dbPTM/download.php", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "pubmed"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}]}, {"category": "GraphProduct", "description": "Current iPTMnet PTM record table with PTM type, source, UniProt protein, organism, site, enzyme, relation identifiers, and publication evidence.", "format": "tsv", "id": "iptmnet.ptm", "license": {"id": "https://creativecommons.org/licenses/by-nc-sa/4.0/", "label": "CC BY-NC-SA 4.0"}, "name": "iPTMnet PTM Table", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "iptmnet"}], "product_file_size": 44116546, "product_url": "https://research.bioinformatics.udel.edu/iptmnet_data/files/current/ptm.txt", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "dbptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsno"}, {"relation_type": "prov:wasDerivedFrom", "source": "efip"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "nextprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "p3db"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphoelm"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphat"}, {"relation_type": "prov:wasDerivedFrom", "source": "pombase"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubtator"}, {"relation_type": "prov:wasDerivedFrom", "source": "rlims-p"}, {"relation_type": "prov:wasDerivedFrom", "source": "signor"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}]}]
{"activity_status": "active", "category": "DataSource", "contacts": [{"category": "Organization", "contact_details": [{"contact_type": "url", "value": "https://biomics.lab.nycu.edu.tw/dbPTM/"}], "label": "dbPTM Team"}], "creation_date": "2026-06-02T00:00:00Z", "description": "dbPTM is an integrated protein post-translational modification resource that curates experimentally verified PTM sites, literature evidence, proteomic datasets, regulatory networks, and disease-associated PTM annotations.", "domains": ["biomedical", "proteomics", "biological systems"], "homepage_url": "https://biomics.lab.nycu.edu.tw/dbPTM/", "id": "dbptm", "last_modified_date": "2026-06-03T00:00:00Z", "layout": "resource_detail", "name": "dbPTM", "products": [{"category": "GraphicalInterface", "description": "dbPTM 2025 web portal for searching proteins, browsing PTM general information, and analyzing disease-associated PTMs, PTM crosstalk, drug-binding-associated PTM sites, and kinase activity profiles.", "id": "dbptm.portal", "name": "dbPTM Web Portal", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "dbptm"}], "product_url": "https://biomics.lab.nycu.edu.tw/dbPTM/"}, {"category": "Product", "description": "dbPTM downloads for experimental and putative PTM sites, benchmark datasets, and cancer proteomics datasets, with PTM records mapped to UniProtKB protein entries and linked to literature evidence.", "format": "tsv", "id": "dbptm.downloads", "name": "dbPTM Download Datasets", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "dbptm"}], "product_url": "https://biomics.lab.nycu.edu.tw/dbPTM/download.php", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "pubmed"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}]}, {"category": "GraphProduct", "description": "Current iPTMnet PTM record table with PTM type, source, UniProt protein, organism, site, enzyme, relation identifiers, and publication evidence.", "format": "tsv", "id": "iptmnet.ptm", "license": {"id": "https://creativecommons.org/licenses/by-nc-sa/4.0/", "label": "CC BY-NC-SA 4.0"}, "name": "iPTMnet PTM Table", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "iptmnet"}], "product_file_size": 44116546, "product_url": "https://research.bioinformatics.udel.edu/iptmnet_data/files/current/ptm.txt", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "dbptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsno"}, {"relation_type": "prov:wasDerivedFrom", "source": "efip"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "nextprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "p3db"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphoelm"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphat"}, {"relation_type": "prov:wasDerivedFrom", "source": "pombase"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubtator"}, {"relation_type": "prov:wasDerivedFrom", "source": "rlims-p"}, {"relation_type": "prov:wasDerivedFrom", "source": "signor"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}]}], "publications": [{"authors": ["Chia-Ru Chung", "Yun Tang", "Yen-Peng Chiu", "Shangfu Li", "Wen-Kai Hsieh", "Tzong-Yi Lee"], "doi": "10.1093/nar/gkae1005", "id": "doi:10.1093/nar/gkae1005", "journal": "Nucleic Acids Research", "preferred": true, "title": "dbPTM 2025 update: comprehensive integration of PTMs and proteomic data for advanced insights into cancer research", "year": "2025"}], "taxon": ["NCBITaxon:9606", "NCBITaxon:10090"]}