Bioteque
A knowledge graph of biological entities and their associations that integrates and formats biomedical data as pre-calculated knowledge graph embeddings
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{"activity_status": "active", "category": "KnowledgeGraph", "contacts": [{"category": "Individual", "contact_details": [{"contact_type": "email", "value": "patrick.aloy@irbbarcelona.org"}], "label": "Patrick Aloy", "orcid": "0000-0002-3557-0236"}, {"category": "Organization", "contact_details": [{"contact_type": "url", "value": "http://sbnb.irbbarcelona.org/"}], "label": "Structural Bioinformatics and Network Biology Group, Institute for Research in Biomedicine (IRB Barcelona)"}], "creation_date": "2025-03-09T00:00:00Z", "description": "A knowledge graph of biological entities and their associations that integrates and formats biomedical data as pre-calculated knowledge graph embeddings", "domains": ["health"], "evaluation_page": "resource/bioteque/bioteque_eval.html", "homepage_url": "https://bioteque.irbbarcelona.org/", "id": "bioteque", "last_modified_date": "2025-09-10T00:00:00Z", "layout": "resource_detail", "name": "Bioteque", "products": [{"category": "Product", "description": "Network embeddings of the Bioteque graph that represent biological entities and their associations", "id": "bioteque.embeddings", "name": "Bioteque Embeddings", "original_source": ["chebi", "cosmic", "achilles", "depmap", "ccle", "gdsc", "cellosaurus", "clue", "ctd", "pharmacodb", "prism", "drugbank", "lincs", "compartments", "offsides", "sider", "drugcentral", "repohub", "chemicalchecker", "repodb", "disgenet", "opentargets", "creeds", "interpro", "reactome", "tissues", "dorothea", "progeny", "gtex", "hpa", "go", "corum", "huri", "intact", "omnipath", "string", "bto"], "product_url": "https://bioteque.irbbarcelona.org/downloads/embeddings", "secondary_source": ["bioteque"]}, {"category": "ProcessProduct", "description": "Scripts used to preprocess and accommodate biomedical datasets into the knowledge database behind the Bioteque repository", "id": "bioteque.code", "license": {"id": "https://opensource.org/licenses/MIT", "label": "MIT License"}, "name": "Bioteque code", "original_source": ["bioteque"], "product_url": "https://gitlabsbnb.irbbarcelona.org/bioteque/bioteque", "secondary_source": ["bioteque"]}, {"category": "ProcessProduct", "description": "BQsupports is a tool to uncover biomedical evidence behind experimental paired data.", "id": "bioteque.bqsupports", "name": "BQsupports", "original_source": ["bioteque"], "product_url": "https://bioteque.irbbarcelona.org/bqsupports", "secondary_source": ["bioteque"]}], "publications": [{"authors": ["Fern\u00e1ndez-Torras A", "Duran-Frigola M", "Bertoni M", "Locatelli M", "Aloy P"], "doi": "doi:10.1038/s41467-022-33026-0", "id": "doi:10.1038/s41467-022-33026-0", "title": "Integrating and formatting biomedical data as pre-calculated knowledge graph embeddings in the Bioteque", "year": "2022"}], "repository": "https://gitlabsbnb.irbbarcelona.org/bioteque/bioteque"}