MotifMap
MotifMap is a system from UC Irvine that provides integrative genome-wide maps of predicted transcription factor binding sites (regulatory motifs) across the human genome and other model species. It combines databases of transcription factor binding motifs, refined multiple-genome alignments, and a comparative genomic statistical scoring approach (Bayesian Branch Length Score) to call candidate regulatory motif sites with associated false discovery rates. The released maps cover yeast, fly, worm, mouse, and human, with the human map containing over 500,000 sites for hundreds of motif matrices. MotifMap is an upstream source of the GenomicKB knowledge graph.
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