Online Mendelian Inheritance in Animals (OMIA)
A catalogue of inherited disorders, other single-locus traits, and associated genes and variants in animals, covering 786 mostly vertebrate species.
[{"category": "Organization", "contact_details": [{"contact_type": "url", "value": "https://omia.org/home/"}], "label": "Sydney School of Veterinary Science, University of Sydney"}]
[{"category": "GraphicalInterface", "description": "The OMIA web interface, providing browsing and search of phenes, species, genes, and likely causal variants.", "format": "http", "id": "omia.browser", "name": "OMIA web interface", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "omia"}], "product_url": "https://omia.org/home/"}, {"category": "Product", "compression": "gzip", "description": "A full dump of the OMIA database as MySQL SQL statements. The OMIA team asks to be contacted to discuss co-authorship arrangements for publications relying on this dump or on extended data.", "format": "mysql", "id": "omia.sql-dump", "name": "OMIA SQL database dump", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "omia"}], "product_file_size": 197714331, "product_url": "https://omia.org/static/omia.sql.gz"}, {"category": "Product", "compression": "gzip", "description": "A full dump of the OMIA database in XML format.", "format": "xml", "id": "omia.xml-dump", "name": "OMIA XML database dump", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "omia"}], "product_file_size": 261825107, "product_url": "https://omia.org/static/omia.xml.gz"}, {"category": "Product", "description": "VCF exports of OMIA likely causal variants, given in the coordinates of the relevant species reference assemblies.", "format": "vcf", "id": "omia.vcf-exports", "name": "OMIA variant VCF exports", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "omia"}], "product_url": "https://omia.org/download/vcf_exports/"}, {"category": "MappingProduct", "description": "A CSV mapping OMIA internal gene identifiers to NCBI Gene identifiers.", "format": "csv", "id": "omia.gene-mappings", "name": "OMIA to NCBI Gene mappings", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "omia"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}], "product_url": "https://omia.org/download/csv/genes/", "warnings": ["File was not able to be retrieved when checked on 2026-08-17: No Content-Length header found"]}, {"category": "GraphProduct", "compatibility": [{"standard": "biolink"}], "description": "A Biolink-conformant KGX TSV node file for the Sniff cross-species substrate, covering dog and human genes and canine and human diseases. Part of the facts-only federation bundle intended for ingest into other knowledge graphs.", "format": "kgx", "id": "sniff.federation-nodes", "name": "Sniff KGX federation export, nodes", "node_categories": ["biolink:Gene", "biolink:Disease"], "node_count": 36915, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "sniff"}], "product_file_size": 3726803, "product_url": "https://sniffdog-data.s3.amazonaws.com/federation/kgx/sniff_nodes.tsv", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ensembl"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "omia"}, {"relation_type": "prov:wasDerivedFrom", "source": "gnomad"}]}, {"category": "GraphProduct", "compatibility": [{"standard": "biolink"}], "description": "A Biolink-conformant KGX TSV edge file for the Sniff cross-species substrate, covering dog-to-human orthology and canine disease associations. Every edge carries provenance and an evidence level, and all edges with a knowledge level of prediction are excluded.", "edge_count": 19823, "format": "kgx", "id": "sniff.federation-edges", "name": "Sniff KGX federation export, edges", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "sniff"}], "predicates": ["biolink:orthologous_to", "biolink:causes", "biolink:gene_associated_with_condition", "biolink:associated_with_increased_likelihood_of"], "product_file_size": 5247253, "product_url": "https://sniffdog-data.s3.amazonaws.com/federation/kgx/sniff_edges.tsv", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ensembl"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "omia"}]}]
{"activity_status": "active", "category": "DataSource", "contacts": [{"category": "Organization", "contact_details": [{"contact_type": "url", "value": "https://omia.org/home/"}], "label": "Sydney School of Veterinary Science, University of Sydney"}], "creation_date": "2026-08-12T00:00:00Z", "description": "A catalogue of inherited disorders, other single-locus traits, and associated genes and variants in animals, covering 786 mostly vertebrate species.", "domains": ["organisms", "genomics", "phenotype", "agriculture"], "homepage_url": "https://omia.org/", "id": "omia", "last_modified_date": "2026-08-12T00:00:00Z", "layout": "resource_detail", "name": "Online Mendelian Inheritance in Animals (OMIA)", "products": [{"category": "GraphicalInterface", "description": "The OMIA web interface, providing browsing and search of phenes, species, genes, and likely causal variants.", "format": "http", "id": "omia.browser", "name": "OMIA web interface", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "omia"}], "product_url": "https://omia.org/home/"}, {"category": "Product", "compression": "gzip", "description": "A full dump of the OMIA database as MySQL SQL statements. The OMIA team asks to be contacted to discuss co-authorship arrangements for publications relying on this dump or on extended data.", "format": "mysql", "id": "omia.sql-dump", "name": "OMIA SQL database dump", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "omia"}], "product_file_size": 197714331, "product_url": "https://omia.org/static/omia.sql.gz"}, {"category": "Product", "compression": "gzip", "description": "A full dump of the OMIA database in XML format.", "format": "xml", "id": "omia.xml-dump", "name": "OMIA XML database dump", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "omia"}], "product_file_size": 261825107, "product_url": "https://omia.org/static/omia.xml.gz"}, {"category": "Product", "description": "VCF exports of OMIA likely causal variants, given in the coordinates of the relevant species reference assemblies.", "format": "vcf", "id": "omia.vcf-exports", "name": "OMIA variant VCF exports", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "omia"}], "product_url": "https://omia.org/download/vcf_exports/"}, {"category": "MappingProduct", "description": "A CSV mapping OMIA internal gene identifiers to NCBI Gene identifiers.", "format": "csv", "id": "omia.gene-mappings", "name": "OMIA to NCBI Gene mappings", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "omia"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}], "product_url": "https://omia.org/download/csv/genes/", "warnings": ["File was not able to be retrieved when checked on 2026-08-17: No Content-Length header found"]}, {"category": "GraphProduct", "compatibility": [{"standard": "biolink"}], "description": "A Biolink-conformant KGX TSV node file for the Sniff cross-species substrate, covering dog and human genes and canine and human diseases. Part of the facts-only federation bundle intended for ingest into other knowledge graphs.", "format": "kgx", "id": "sniff.federation-nodes", "name": "Sniff KGX federation export, nodes", "node_categories": ["biolink:Gene", "biolink:Disease"], "node_count": 36915, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "sniff"}], "product_file_size": 3726803, "product_url": "https://sniffdog-data.s3.amazonaws.com/federation/kgx/sniff_nodes.tsv", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ensembl"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "omia"}, {"relation_type": "prov:wasDerivedFrom", "source": "gnomad"}]}, {"category": "GraphProduct", "compatibility": [{"standard": "biolink"}], "description": "A Biolink-conformant KGX TSV edge file for the Sniff cross-species substrate, covering dog-to-human orthology and canine disease associations. Every edge carries provenance and an evidence level, and all edges with a knowledge level of prediction are excluded.", "edge_count": 19823, "format": "kgx", "id": "sniff.federation-edges", "name": "Sniff KGX federation export, edges", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "sniff"}], "predicates": ["biolink:orthologous_to", "biolink:causes", "biolink:gene_associated_with_condition", "biolink:associated_with_increased_likelihood_of"], "product_file_size": 5247253, "product_url": "https://sniffdog-data.s3.amazonaws.com/federation/kgx/sniff_edges.tsv", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ensembl"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "omia"}]}], "synonyms": ["OMIA"]}