miRGate
miRGate is a curated database of computationally predicted and experimentally validated miRNA-mRNA target pairs for human, mouse, and rat. The database integrates multiple prediction algorithms and includes sequences for both miRNAs and mRNA 3'-UTRs, along with experimentally validated data from four well-known databases. miRGate provides computational predictions using well-established algorithms and offers both a web interface and a REST API for programmatic access.
[]
[{"category": "Portal", "description": "Web portal for querying and browsing miRNA-mRNA target predictions for human, mouse, and rat", "format": "http", "id": "mirgate.portal", "name": "miRGate Web Portal", "original_source": ["mirgate"], "product_url": "http://mirgate.bioinfo.cnio.es", "warnings": ["File was not able to be retrieved when checked on 2026-04-07: Error connecting to URL: HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80): Max retries exceeded with url: / (Caused by NameResolutionError(\"HTTPConnection(host='mirgate.bioinfo.cnio.es', port=80): Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2026-03-30_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"HTTPConnection(host='mirgate.bioinfo.cnio.es', port=80)_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-12-13_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7fb7105dcfd0>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-12-11_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7f1820cf4080>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-12-11_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7f20853e4ac0>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-12-11_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7f8e7e6a3ef0>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-12-11_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7f6442916c50>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-12-09_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7f27dfb99930>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-12-08_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7f1b7d8cd630>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-12-08_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7fa6d4d005b0>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-12-07_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7fa0ec10f4d0>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-12-05_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7f3ace4fd4e0>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-12-04_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7f3d89980d60>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-12-04_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7fd6e7bff5c0>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-12-04_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7fe0f5248790>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-11-26_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7f435b6c3280>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-11-25_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7f7a1ba05ac0>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-11-25_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7fecb6959e40>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-11-22_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7fa9b98fa590>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-11-21_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7f182d1c9c90>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-11-19_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7f2161344d00>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-11-19_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7fb9779db700>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-11-17_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7fd68a510490>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2026-04-10: Error connecting to URL: HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80): Max retries exceeded with url: / (Caused by NameResolutionError(\"HTTPConnection(host='mirgate.bioinfo.cnio.es', port=80): Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))"]}, {"category": "ProgrammingInterface", "description": "REST API for programmatic access to miRNA-mRNA target prediction data", "format": "http", "id": "mirgate.api", "name": "miRGate API", "original_source": ["mirgate"], "product_url": "http://mirgate.bioinfo.cnio.es/API/"}]
{"activity_status": "unresponsive", "category": "DataSource", "creation_date": "2025-10-30T00:00:00Z", "description": "miRGate is a curated database of computationally predicted and experimentally validated miRNA-mRNA target pairs for human, mouse, and rat. The database integrates multiple prediction algorithms and includes sequences for both miRNAs and mRNA 3'-UTRs, along with experimentally validated data from four well-known databases. miRGate provides computational predictions using well-established algorithms and offers both a web interface and a REST API for programmatic access.", "domains": ["genomics", "biomedical"], "homepage_url": "http://mirgate.bioinfo.cnio.es", "id": "mirgate", "infores_id": "mirgate", "last_modified_date": "2025-11-17T00:00:00Z", "layout": "resource_detail", "name": "miRGate", "products": [{"category": "Portal", "description": "Web portal for querying and browsing miRNA-mRNA target predictions for human, mouse, and rat", "format": "http", "id": "mirgate.portal", "name": "miRGate Web Portal", "original_source": ["mirgate"], "product_url": "http://mirgate.bioinfo.cnio.es", "warnings": ["File was not able to be retrieved when checked on 2026-04-07: Error connecting to URL: HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80): Max retries exceeded with url: / (Caused by NameResolutionError(\"HTTPConnection(host='mirgate.bioinfo.cnio.es', port=80): Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2026-03-30_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"HTTPConnection(host='mirgate.bioinfo.cnio.es', port=80)_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-12-13_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7fb7105dcfd0>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-12-11_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7f1820cf4080>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-12-11_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7f20853e4ac0>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-12-11_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7f8e7e6a3ef0>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-12-11_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7f6442916c50>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-12-09_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7f27dfb99930>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-12-08_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7f1b7d8cd630>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-12-08_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7fa6d4d005b0>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-12-07_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7fa0ec10f4d0>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-12-05_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7f3ace4fd4e0>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-12-04_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7f3d89980d60>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-12-04_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7fd6e7bff5c0>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-12-04_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7fe0f5248790>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-11-26_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7f435b6c3280>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-11-25_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7f7a1ba05ac0>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-11-25_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7fecb6959e40>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-11-22_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7fa9b98fa590>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-11-21_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7f182d1c9c90>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-11-19_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7f2161344d00>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-11-19_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7fb9779db700>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2025-11-17_ Error connecting to URL_ HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80)_ Max retries exceeded with url_ / (Caused by NameResolutionError(\"<urllib3.connection.HTTPConnection object at 0x7fd68a510490>_ Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))", "File was not able to be retrieved when checked on 2026-04-10: Error connecting to URL: HTTPConnectionPool(host='mirgate.bioinfo.cnio.es', port=80): Max retries exceeded with url: / (Caused by NameResolutionError(\"HTTPConnection(host='mirgate.bioinfo.cnio.es', port=80): Failed to resolve 'mirgate.bioinfo.cnio.es' ([Errno -2] Name or service not known)\"))"]}, {"category": "ProgrammingInterface", "description": "REST API for programmatic access to miRNA-mRNA target prediction data", "format": "http", "id": "mirgate.api", "name": "miRGate API", "original_source": ["mirgate"], "product_url": "http://mirgate.bioinfo.cnio.es/API/"}], "publications": [{"id": "PMID:25858286"}], "synonyms": ["miRGate"], "taxon": ["NCBITaxon:9606", "NCBITaxon:10090", "NCBITaxon:10116"], "warnings": ["The miRGate website (http://mirgate.bioinfo.cnio.es) is no longer accessible as of November 2025."]}