CCLE
CCLE is the Cancer Cell Line Encyclopedia, a collaboration between the Broad Institute and the Novartis Institutes for Biomedical Research.
[{"category": "Organization", "label": "CCLE"}]
[{"category": "Product", "description": "ccle OBO", "format": "obo", "id": "obo-db-ingest.ccle.obo", "license": {"id": "https://opendatacommons.org/licenses/odbl/1-0/", "label": "ODbL-1.0"}, "name": "ccle OBO", "original_source": ["ccle"], "product_file_size": 19324, "product_url": "https://w3id.org/biopragmatics/resources/ccle/ccle.obo", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "ccle OWL", "format": "owl", "id": "obo-db-ingest.ccle.owl", "license": {"id": "https://opendatacommons.org/licenses/odbl/1-0/", "label": "ODbL-1.0"}, "name": "ccle OWL", "original_source": ["ccle"], "product_file_size": 29770, "product_url": "https://w3id.org/biopragmatics/resources/ccle/ccle.owl", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "ccle OBO Graph JSON", "format": "json", "id": "obo-db-ingest.ccle.json", "license": {"id": "https://opendatacommons.org/licenses/odbl/1-0/", "label": "ODbL-1.0"}, "name": "ccle OBO Graph JSON", "original_source": ["ccle"], "product_file_size": 23282, "product_url": "https://w3id.org/biopragmatics/resources/ccle/ccle.json", "secondary_source": ["obo-db-ingest"]}, {"category": "MappingProduct", "description": "ccle SSSOM", "format": "sssom", "id": "obo-db-ingest.ccle.sssom.tsv", "license": {"id": "https://opendatacommons.org/licenses/odbl/1-0/", "label": "ODbL-1.0"}, "name": "ccle SSSOM", "original_source": ["ccle"], "product_file_size": 14414, "product_url": "https://w3id.org/biopragmatics/resources/ccle/ccle.sssom.tsv", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "Network embeddings of the Bioteque graph that represent biological entities and their associations", "id": "bioteque.embeddings", "name": "Bioteque Embeddings", "original_source": ["chebi", "cosmic", "achilles", "depmap", "ccle", "gdsc", "cellosaurus", "clue", "ctd", "pharmacodb", "prism", "drugbank", "lincs", "compartments", "offsides", "sider", "drugcentral", "repohub", "chemicalchecker", "repodb", "disgenet", "opentargets", "creeds", "interpro", "reactome", "tissues", "dorothea", "progeny", "gtex", "hpa", "go", "corum", "huri", "intact", "omnipath", "string", "bto"], "product_url": "https://bioteque.irbbarcelona.org/downloads/embeddings", "secondary_source": ["bioteque"]}, {"category": "ProcessProduct", "description": "INDRA CoGEx is a graph database integrating causal relations, ontological relations, properties, and data, assembled at scale automatically from the scientific literature and structured sources. This is the code to build the graph.", "id": "indra.cogex.code", "name": "INDRA CoGEx Build Code", "original_source": ["chembl", "sider", "reactome", "wikipathways", "hp", "nihreporter", "disgenet", "pubmed", "gwascatalog", "cellmarker", "go", "bgee", "ccle", "clinicaltrialsgov", "indra"], "product_url": "https://github.com/gyorilab/indra_cogex", "secondary_source": ["indra"]}, {"category": "Product", "description": "ccle Nodes TSV", "format": "tsv", "id": "obo-db-ingest.ccle.tsv", "license": {"id": "https://opendatacommons.org/licenses/odbl/1-0/", "label": "ODbL-1.0"}, "name": "ccle Nodes TSV", "original_source": ["ccle"], "product_file_size": 12188, "product_url": "https://w3id.org/biopragmatics/resources/ccle/ccle.tsv", "secondary_source": ["obo-db-ingest"]}]
{"activity_status": "active", "category": "DataSource", "contacts": [{"category": "Organization", "label": "CCLE"}], "creation_date": "2025-03-18T00:00:00Z", "description": "CCLE is the Cancer Cell Line Encyclopedia, a collaboration between the Broad Institute and the Novartis Institutes for Biomedical Research.", "domains": ["health"], "homepage_url": "https://sites.broadinstitute.org/ccle/", "id": "ccle", "last_modified_date": "2025-12-13T00:00:00Z", "layout": "resource_detail", "name": "CCLE", "products": [{"category": "Product", "description": "ccle OBO", "format": "obo", "id": "obo-db-ingest.ccle.obo", "license": {"id": "https://opendatacommons.org/licenses/odbl/1-0/", "label": "ODbL-1.0"}, "name": "ccle OBO", "original_source": ["ccle"], "product_file_size": 19324, "product_url": "https://w3id.org/biopragmatics/resources/ccle/ccle.obo", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "ccle OWL", "format": "owl", "id": "obo-db-ingest.ccle.owl", "license": {"id": "https://opendatacommons.org/licenses/odbl/1-0/", "label": "ODbL-1.0"}, "name": "ccle OWL", "original_source": ["ccle"], "product_file_size": 29770, "product_url": "https://w3id.org/biopragmatics/resources/ccle/ccle.owl", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "ccle OBO Graph JSON", "format": "json", "id": "obo-db-ingest.ccle.json", "license": {"id": "https://opendatacommons.org/licenses/odbl/1-0/", "label": "ODbL-1.0"}, "name": "ccle OBO Graph JSON", "original_source": ["ccle"], "product_file_size": 23282, "product_url": "https://w3id.org/biopragmatics/resources/ccle/ccle.json", "secondary_source": ["obo-db-ingest"]}, {"category": "MappingProduct", "description": "ccle SSSOM", "format": "sssom", "id": "obo-db-ingest.ccle.sssom.tsv", "license": {"id": "https://opendatacommons.org/licenses/odbl/1-0/", "label": "ODbL-1.0"}, "name": "ccle SSSOM", "original_source": ["ccle"], "product_file_size": 14414, "product_url": "https://w3id.org/biopragmatics/resources/ccle/ccle.sssom.tsv", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "Network embeddings of the Bioteque graph that represent biological entities and their associations", "id": "bioteque.embeddings", "name": "Bioteque Embeddings", "original_source": ["chebi", "cosmic", "achilles", "depmap", "ccle", "gdsc", "cellosaurus", "clue", "ctd", "pharmacodb", "prism", "drugbank", "lincs", "compartments", "offsides", "sider", "drugcentral", "repohub", "chemicalchecker", "repodb", "disgenet", "opentargets", "creeds", "interpro", "reactome", "tissues", "dorothea", "progeny", "gtex", "hpa", "go", "corum", "huri", "intact", "omnipath", "string", "bto"], "product_url": "https://bioteque.irbbarcelona.org/downloads/embeddings", "secondary_source": ["bioteque"]}, {"category": "ProcessProduct", "description": "INDRA CoGEx is a graph database integrating causal relations, ontological relations, properties, and data, assembled at scale automatically from the scientific literature and structured sources. This is the code to build the graph.", "id": "indra.cogex.code", "name": "INDRA CoGEx Build Code", "original_source": ["chembl", "sider", "reactome", "wikipathways", "hp", "nihreporter", "disgenet", "pubmed", "gwascatalog", "cellmarker", "go", "bgee", "ccle", "clinicaltrialsgov", "indra"], "product_url": "https://github.com/gyorilab/indra_cogex", "secondary_source": ["indra"]}, {"category": "Product", "description": "ccle Nodes TSV", "format": "tsv", "id": "obo-db-ingest.ccle.tsv", "license": {"id": "https://opendatacommons.org/licenses/odbl/1-0/", "label": "ODbL-1.0"}, "name": "ccle Nodes TSV", "original_source": ["ccle"], "product_file_size": 12188, "product_url": "https://w3id.org/biopragmatics/resources/ccle/ccle.tsv", "secondary_source": ["obo-db-ingest"]}], "taxon": ["NCBITaxon:9606"]}