Bio2RDF
Bio2RDF is a large-scale semantic web integration project that converts diverse biological and biomedical datasets into RDF (Resource Description Framework) and makes them available through SPARQL endpoints. The project provides linked data representations of over 35 biological databases including UniProt, GenBank, KEGG, DrugBank, and many others, enabling federated queries across heterogeneous data sources using standard semantic web technologies.
[{"category": "Organization", "contact_details": [{"contact_type": "url", "value": "https://bio2rdf.org"}], "label": "Bio2RDF"}]
[{"category": "ProgrammingInterface", "description": "SPARQL endpoint for querying Bio2RDF linked data", "format": "http", "id": "bio2rdf.sparql", "name": "Bio2RDF SPARQL Endpoint", "original_source": ["bio2rdf"], "product_url": "https://bio2rdf.org/sparql"}, {"category": "Product", "description": "RDF dumps of integrated biological databases", "format": "ttl", "id": "bio2rdf.dumps", "name": "Bio2RDF RDF Dumps", "original_source": ["bio2rdf"], "product_url": "https://download.bio2rdf.org/"}, {"category": "GraphicalInterface", "description": "Web interface for browsing Bio2RDF resources", "format": "http", "id": "bio2rdf.web", "name": "Bio2RDF Web Interface", "original_source": ["bio2rdf"], "product_url": "https://bio2rdf.org"}]
{"activity_status": "inactive", "category": "Aggregator", "contacts": [{"category": "Organization", "contact_details": [{"contact_type": "url", "value": "https://bio2rdf.org"}], "label": "Bio2RDF"}], "creation_date": "2025-11-05T00:00:00Z", "description": "Bio2RDF is a large-scale semantic web integration project that converts diverse biological and biomedical datasets into RDF (Resource Description Framework) and makes them available through SPARQL endpoints. The project provides linked data representations of over 35 biological databases including UniProt, GenBank, KEGG, DrugBank, and many others, enabling federated queries across heterogeneous data sources using standard semantic web technologies.", "domains": ["biomedical", "genomics", "biological systems", "information technology"], "homepage_url": "https://bio2rdf.org", "id": "bio2rdf", "infores_id": "bio2rdf", "last_modified_date": "2025-11-05T00:00:00Z", "layout": "resource_detail", "license": {"id": "https://creativecommons.org/licenses/by/3.0/", "label": "CC BY 3.0", "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png"}, "name": "Bio2RDF", "products": [{"category": "ProgrammingInterface", "description": "SPARQL endpoint for querying Bio2RDF linked data", "format": "http", "id": "bio2rdf.sparql", "name": "Bio2RDF SPARQL Endpoint", "original_source": ["bio2rdf"], "product_url": "https://bio2rdf.org/sparql"}, {"category": "Product", "description": "RDF dumps of integrated biological databases", "format": "ttl", "id": "bio2rdf.dumps", "name": "Bio2RDF RDF Dumps", "original_source": ["bio2rdf"], "product_url": "https://download.bio2rdf.org/"}, {"category": "GraphicalInterface", "description": "Web interface for browsing Bio2RDF resources", "format": "http", "id": "bio2rdf.web", "name": "Bio2RDF Web Interface", "original_source": ["bio2rdf"], "product_url": "https://bio2rdf.org"}], "publications": [{"id": "https://doi.org/10.1186/2041-1480-4-S1-S1"}], "repository": "https://github.com/bio2rdf/bio2rdf-scripts", "synonyms": ["Bio2RDF", "bio2rdf"], "warnings": ["The Bio2RDF project has reduced activity in recent years. Some endpoints and data may be outdated or unavailable."]}