GWAS Catalog
The NHGRI-EBI GWAS Catalog is a curated, searchable, and freely available database of SNP-trait associations from published and submitted genome-wide association studies. Expert curators extract reported traits, significant variant-trait associations, and study metadata, providing an integrated resource updated on a weekly cycle and accessible via web interfaces, bulk downloads, summary statistics, and a REST API.
[{"category": "Organization", "contact_details": [{"contact_type": "email", "value": "gwas-info@ebi.ac.uk"}, {"contact_type": "url", "value": "https://www.ebi.ac.uk/gwas/"}], "id": "ebi", "label": "NHGRI-EBI GWAS Catalog Team"}]
[{"category": "GraphicalInterface", "description": "Web interface for searching, browsing, and visualizing curated GWAS variant-trait associations and study metadata", "format": "http", "id": "gwascatalog.web", "name": "GWAS Catalog Web Portal", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}], "product_url": "https://www.ebi.ac.uk/gwas/"}, {"category": "ProgrammingInterface", "description": "REST API providing programmatic access to GWAS Catalog studies, associations, variants, traits, and summary statistics metadata", "id": "gwascatalog.api", "is_public": true, "name": "GWAS Catalog REST API v2", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}], "product_url": "https://www.ebi.ac.uk/gwas/docs/api"}, {"category": "Product", "description": "Full data dump of GWAS Catalog associations in tab-delimited format (SNP-trait association data)", "format": "tsv", "id": "gwascatalog.associations.tsv", "name": "GWAS Catalog Associations TSV", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}], "product_file_size": 482336061, "product_url": "https://ftp.ebi.ac.uk/pub/databases/gwas/releases/latest/gwas-catalog-associations.tsv"}, {"category": "Product", "description": "Full data dump of GWAS Catalog associations in JSON format", "format": "json", "id": "gwascatalog.associations.json", "name": "GWAS Catalog Associations JSON", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}], "product_url": "https://ftp.ebi.ac.uk/pub/databases/gwas/releases/latest/gwas-catalog-associations.json", "warnings": ["File was not able to be retrieved when checked on 2026-05-19: HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2026-03-30_ HTTP 404 error when accessing file"]}, {"category": "Product", "description": "Study metadata file containing per-study information for GWAS Catalog entries", "format": "tsv", "id": "gwascatalog.studies.tsv", "name": "GWAS Catalog Studies TSV", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}], "product_file_size": 48604130, "product_url": "https://ftp.ebi.ac.uk/pub/databases/gwas/releases/latest/gwas-catalog-studies.tsv"}, {"category": "Product", "description": "Variant metadata file containing per-variant information (e.g., rsIDs) present in the GWAS Catalog", "format": "tsv", "id": "gwascatalog.variants.tsv", "name": "GWAS Catalog Variants TSV", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}], "product_url": "https://ftp.ebi.ac.uk/pub/databases/gwas/releases/latest/gwas-catalog-variants.tsv", "warnings": ["File was not able to be retrieved when checked on 2026-05-19: HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2026-03-30_ HTTP 404 error when accessing file"]}, {"category": "Product", "description": "EFO trait mapping file linking GWAS Catalog reported traits to Experimental Factor Ontology terms", "format": "tsv", "id": "gwascatalog.traits_efo.tsv", "name": "GWAS Catalog Trait EFO Mappings TSV", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}], "product_url": "https://ftp.ebi.ac.uk/pub/databases/gwas/releases/latest/gwas-catalog-traits-efo.tsv", "warnings": ["File was not able to be retrieved when checked on 2026-05-19: HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2026-03-30_ HTTP 404 error when accessing file"]}, {"category": "Product", "description": "RDF/OWL representation of GWAS Catalog associations enabling semantic integration", "format": "owl", "id": "gwascatalog.associations.owl", "name": "GWAS Catalog Associations OWL", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}], "product_url": "https://ftp.ebi.ac.uk/pub/databases/gwas/releases/latest/gwas-catalog-associations.owl.gz", "warnings": ["File was not able to be retrieved when checked on 2026-05-19: HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2026-03-30_ HTTP 404 error when accessing file"]}, {"category": "DocumentationProduct", "description": "Compressed GWAS Catalog diagram (karyotype visualization) in SVG format (current release)", "format": "svg", "id": "gwascatalog.diagram.current", "name": "GWAS Catalog Diagram (Current SVG)", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}], "product_url": "https://ftp.ebi.ac.uk/pub/databases/gwas/releases/latest/gwas-catalog-diagram.svg", "warnings": ["File was not able to be retrieved when checked on 2026-05-19: HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2026-03-30_ HTTP 404 error when accessing file"]}, {"category": "DocumentationProduct", "description": "Archive of previous GWAS Catalog diagram versions (SVG format)", "format": "svg", "id": "gwascatalog.diagram.archive", "name": "GWAS Catalog Diagram Archive", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}], "product_url": "https://ftp.ebi.ac.uk/pub/databases/gwas/releases/latest/gwas-catalog-diagram-archive.zip", "warnings": ["File was not able to be retrieved when checked on 2026-05-19: HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2026-03-30_ HTTP 404 error when accessing file"]}, {"category": "DocumentationProduct", "description": "Harmonised summary statistics landing page (FTP directory containing per-study summary statistics under CC0 where available)", "id": "gwascatalog.summary_statistics.ftp", "name": "GWAS Catalog Summary Statistics FTP", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}], "product_url": "ftp://ftp.ebi.ac.uk/pub/databases/gwas/summary_statistics/", "warnings": ["File was not able to be retrieved when checked on 2025-11-26_ Error connecting to URL_ No connection adapters were found for 'ftp_//ftp.ebi.ac.uk/pub/databases/gwas/summary_statistics/'"]}, {"category": "GraphProduct", "description": "GWASCatalog Automat", "format": "kgx-jsonl", "id": "automat.gwascatalog", "infores_id": "automat-gwas-catalog", "name": "gwascatalog_automat", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "automat"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}], "product_url": "https://stars.renci.org/var/plater/bl-4.2.1/GWASCatalog_Automat/e30aceb322a33462/"}, {"category": "GraphProduct", "description": "Neo4j database dump of the Clinical Knowledge Graph and additional relationships", "dump_format": "neo4j", "edge_count": 220000000, "format": "mixed", "id": "clinicalkg.graph", "name": "CKG Graph Dump", "node_count": 16000000, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bto"}, {"relation_type": "prov:hadPrimarySource", "source": "cancer-genome-interpreter"}, {"relation_type": "prov:hadPrimarySource", "source": "clinicalkg"}, {"relation_type": "prov:hadPrimarySource", "source": "corum"}, {"relation_type": "prov:hadPrimarySource", "source": "dgidb"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "foodb"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "mi"}, {"relation_type": "prov:hadPrimarySource", "source": "mod"}, {"relation_type": "prov:hadPrimarySource", "source": "ms"}, {"relation_type": "prov:hadPrimarySource", "source": "mutationds"}, {"relation_type": "prov:hadPrimarySource", "source": "oncokb"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "phosphositeplus"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "signor"}, {"relation_type": "prov:hadPrimarySource", "source": "smpdb"}, {"relation_type": "prov:hadPrimarySource", "source": "snomedct"}, {"relation_type": "prov:hadPrimarySource", "source": "stitch"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "uo"}], "product_url": "https://data.mendeley.com/datasets/mrcf7f4tc2/1"}, {"category": "ProcessProduct", "description": "INDRA CoGEx is a graph database integrating causal relations, ontological relations, properties, and data, assembled at scale automatically from the scientific literature and structured sources. This is the code to build the graph.", "id": "indra.cogex.code", "name": "INDRA CoGEx Build Code", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "nihreporter"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmed"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "cellmarker"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "ccle"}, {"relation_type": "prov:hadPrimarySource", "source": "clinicaltrialsgov"}, {"relation_type": "prov:hadPrimarySource", "source": "indra"}], "product_url": "https://github.com/gyorilab/indra_cogex"}, {"category": "GraphProduct", "description": "The SPOKE knowledge graph containing nodes and edges from multiple biomedical data sources.", "id": "spoke.graph", "name": "SPOKE Graph", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "bindingdb"}, {"relation_type": "prov:hadPrimarySource", "source": "bv-brc"}, {"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "civic"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "clinicaltrialsgov"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "drugcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "foodb"}, {"relation_type": "prov:hadPrimarySource", "source": "gdsc"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "lincs-l1000"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "metacyc"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}, {"relation_type": "prov:hadPrimarySource", "source": "pathophenodb"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "pid"}, {"relation_type": "prov:hadPrimarySource", "source": "protcid"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmed"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "spoke"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}]}, {"category": "GraphProduct", "description": "DisGeNET data, including gene to disease associations and variant to disease associations (requires registration and subscription).", "id": "disgenet.data", "name": "DisGeNET Data", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "clingen"}, {"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "mgd"}, {"relation_type": "prov:hadPrimarySource", "source": "rgd"}, {"relation_type": "prov:hadPrimarySource", "source": "orphanet"}, {"relation_type": "prov:hadPrimarySource", "source": "psygenet"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "phewascat"}, {"relation_type": "prov:hadPrimarySource", "source": "ukbiobank"}, {"relation_type": "prov:hadPrimarySource", "source": "finngen"}, {"relation_type": "prov:hadPrimarySource", "source": "clinicaltrialsgov"}], "product_url": "https://www.disgenet.com/"}, {"category": "GraphicalInterface", "description": "A browser interface for a knowledge graph for Alzheimer's Disease.", "format": "http", "id": "alzkb.browser", "name": "AlzKB Graph Database Browser", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "alzkb"}, {"relation_type": "prov:hadPrimarySource", "source": "aop-db"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "dsstox"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "hrpimp"}, {"relation_type": "prov:hadPrimarySource", "source": "lincs-l1000"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "pharmacotherapydb"}, {"relation_type": "prov:hadPrimarySource", "source": "pid"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}], "product_url": "https://alzkb.ai:7473/login", "secondary_source": [{"relation_type": "prov:wasInfluencedBy", "source": "hetionet"}]}, {"category": "GraphProduct", "description": "Memgraph data release for AlzKB.", "id": "alzkb.data", "name": "AlzKB Data Release (Version 2.0.0)", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "alzkb"}, {"relation_type": "prov:hadPrimarySource", "source": "aop-db"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "dsstox"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "hrpimp"}, {"relation_type": "prov:hadPrimarySource", "source": "lincs-l1000"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "pharmacotherapydb"}, {"relation_type": "prov:hadPrimarySource", "source": "pid"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}], "product_url": "https://github.com/EpistasisLab/AlzKB/releases/tag/v2.0.0", "secondary_source": [{"relation_type": "prov:wasInfluencedBy", "source": "hetionet"}]}, {"category": "Product", "description": "The EPA has developed the Adverse Outcome Pathway Database (AOP-DB) to better characterize adverse outcomes of toxicological interest that are relevant to human health and the environment. Since its inception, the AOP-DB has been developed with the aim of integrating AOP molecular target information with other publicly available datasets to facilitate computational analyses of AOP information.", "id": "aop-db.data", "name": "AOP-DB Data", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "1000genomes"}, {"relation_type": "prov:hadPrimarySource", "source": "aop-db"}, {"relation_type": "prov:hadPrimarySource", "source": "aop-wiki"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "toxcast"}], "product_url": "https://catalog.data.gov/dataset/adverse-outcome-pathway-database-aop-db-version-2"}, {"category": "GraphProduct", "description": "Neo4j database dump of the Clinical Knowledge Graph and additional relationships", "dump_format": "neo4j", "edge_count": 220000000, "format": "mixed", "id": "cancer-genome-interpreter.clinicalkg.graph", "name": "CKG Graph Dump", "node_count": 16000000, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "stitch"}, {"relation_type": "prov:hadPrimarySource", "source": "smpdb"}, {"relation_type": "prov:hadPrimarySource", "source": "signor"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "phosphositeplus"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "oncokb"}, {"relation_type": "prov:hadPrimarySource", "source": "mutationds"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "foodb"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "dgidb"}, {"relation_type": "prov:hadPrimarySource", "source": "corum"}, {"relation_type": "prov:hadPrimarySource", "source": "cancer-genome-interpreter"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "bto"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "snomedct"}, {"relation_type": "prov:hadPrimarySource", "source": "mod"}, {"relation_type": "prov:hadPrimarySource", "source": "mi"}, {"relation_type": "prov:hadPrimarySource", "source": "ms"}, {"relation_type": "prov:hadPrimarySource", "source": "uo"}], "product_url": "https://data.mendeley.com/datasets/mrcf7f4tc2/1"}, {"category": "Product", "description": "Genetic variant data from ClinVar, dbSNP, GWAS Catalog and other variant databases", "format": "http", "id": "genecards.variant.data", "name": "GeneCards Variant Data", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "dbsnp"}, {"relation_type": "prov:hadPrimarySource", "source": "genecards"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}], "product_url": "https://www.genecards.org/", "warnings": ["File was not able to be retrieved when checked on 2026-05-19: HTTP 403 error when accessing file", "File was not able to be retrieved when checked on 2026-03-30_ HTTP 403 error when accessing file"]}, {"category": "GraphProduct", "description": "Graph database dump and additional relationship files for the Clinical Knowledge Graph.", "format": "neo4j", "id": "ckg.graph", "name": "CKG Graph Database Dump", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bto"}, {"relation_type": "prov:hadPrimarySource", "source": "cancer-genome-interpreter"}, {"relation_type": "prov:hadPrimarySource", "source": "ckg"}, {"relation_type": "prov:hadPrimarySource", "source": "corum"}, {"relation_type": "prov:hadPrimarySource", "source": "dgidb"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "foodb"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "mi"}, {"relation_type": "prov:hadPrimarySource", "source": "mod"}, {"relation_type": "prov:hadPrimarySource", "source": "ms"}, {"relation_type": "prov:hadPrimarySource", "source": "mutationds"}, {"relation_type": "prov:hadPrimarySource", "source": "oncokb"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "phosphositeplus"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "signor"}, {"relation_type": "prov:hadPrimarySource", "source": "smpdb"}, {"relation_type": "prov:hadPrimarySource", "source": "snomedct"}, {"relation_type": "prov:hadPrimarySource", "source": "stitch"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "uo"}], "product_url": "https://data.mendeley.com/datasets/mrcf7f4tc2/1"}]
{"activity_status": "active", "category": "DataSource", "contacts": [{"category": "Organization", "contact_details": [{"contact_type": "email", "value": "gwas-info@ebi.ac.uk"}, {"contact_type": "url", "value": "https://www.ebi.ac.uk/gwas/"}], "id": "ebi", "label": "NHGRI-EBI GWAS Catalog Team"}], "creation_date": "2025-07-20T00:00:00Z", "description": "The NHGRI-EBI GWAS Catalog is a curated, searchable, and freely available database of SNP-trait associations from published and submitted genome-wide association studies. Expert curators extract reported traits, significant variant-trait associations, and study metadata, providing an integrated resource updated on a weekly cycle and accessible via web interfaces, bulk downloads, summary statistics, and a REST API.", "domains": ["genomics", "health", "biomedical", "investigations"], "homepage_url": "https://www.ebi.ac.uk/gwas/", "id": "gwascatalog", "infores_id": "gwas-catalog", "last_modified_date": "2025-09-02T00:00:00Z", "layout": "resource_detail", "license": {"id": "https://www.ebi.ac.uk/about/terms-of-use", "label": "EMBL-EBI Terms of Use (summary statistics CC0 unless otherwise stated)"}, "name": "GWAS Catalog", "products": [{"category": "GraphicalInterface", "description": "Web interface for searching, browsing, and visualizing curated GWAS variant-trait associations and study metadata", "format": "http", "id": "gwascatalog.web", "name": "GWAS Catalog Web Portal", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}], "product_url": "https://www.ebi.ac.uk/gwas/"}, {"category": "ProgrammingInterface", "description": "REST API providing programmatic access to GWAS Catalog studies, associations, variants, traits, and summary statistics metadata", "id": "gwascatalog.api", "is_public": true, "name": "GWAS Catalog REST API v2", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}], "product_url": "https://www.ebi.ac.uk/gwas/docs/api"}, {"category": "Product", "description": "Full data dump of GWAS Catalog associations in tab-delimited format (SNP-trait association data)", "format": "tsv", "id": "gwascatalog.associations.tsv", "name": "GWAS Catalog Associations TSV", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}], "product_file_size": 482336061, "product_url": "https://ftp.ebi.ac.uk/pub/databases/gwas/releases/latest/gwas-catalog-associations.tsv"}, {"category": "Product", "description": "Full data dump of GWAS Catalog associations in JSON format", "format": "json", "id": "gwascatalog.associations.json", "name": "GWAS Catalog Associations JSON", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}], "product_url": "https://ftp.ebi.ac.uk/pub/databases/gwas/releases/latest/gwas-catalog-associations.json", "warnings": ["File was not able to be retrieved when checked on 2026-05-19: HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2026-03-30_ HTTP 404 error when accessing file"]}, {"category": "Product", "description": "Study metadata file containing per-study information for GWAS Catalog entries", "format": "tsv", "id": "gwascatalog.studies.tsv", "name": "GWAS Catalog Studies TSV", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}], "product_file_size": 48604130, "product_url": "https://ftp.ebi.ac.uk/pub/databases/gwas/releases/latest/gwas-catalog-studies.tsv"}, {"category": "Product", "description": "Variant metadata file containing per-variant information (e.g., rsIDs) present in the GWAS Catalog", "format": "tsv", "id": "gwascatalog.variants.tsv", "name": "GWAS Catalog Variants TSV", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}], "product_url": "https://ftp.ebi.ac.uk/pub/databases/gwas/releases/latest/gwas-catalog-variants.tsv", "warnings": ["File was not able to be retrieved when checked on 2026-05-19: HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2026-03-30_ HTTP 404 error when accessing file"]}, {"category": "Product", "description": "EFO trait mapping file linking GWAS Catalog reported traits to Experimental Factor Ontology terms", "format": "tsv", "id": "gwascatalog.traits_efo.tsv", "name": "GWAS Catalog Trait EFO Mappings TSV", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}], "product_url": "https://ftp.ebi.ac.uk/pub/databases/gwas/releases/latest/gwas-catalog-traits-efo.tsv", "warnings": ["File was not able to be retrieved when checked on 2026-05-19: HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2026-03-30_ HTTP 404 error when accessing file"]}, {"category": "Product", "description": "RDF/OWL representation of GWAS Catalog associations enabling semantic integration", "format": "owl", "id": "gwascatalog.associations.owl", "name": "GWAS Catalog Associations OWL", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}], "product_url": "https://ftp.ebi.ac.uk/pub/databases/gwas/releases/latest/gwas-catalog-associations.owl.gz", "warnings": ["File was not able to be retrieved when checked on 2026-05-19: HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2026-03-30_ HTTP 404 error when accessing file"]}, {"category": "DocumentationProduct", "description": "Compressed GWAS Catalog diagram (karyotype visualization) in SVG format (current release)", "format": "svg", "id": "gwascatalog.diagram.current", "name": "GWAS Catalog Diagram (Current SVG)", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}], "product_url": "https://ftp.ebi.ac.uk/pub/databases/gwas/releases/latest/gwas-catalog-diagram.svg", "warnings": ["File was not able to be retrieved when checked on 2026-05-19: HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2026-03-30_ HTTP 404 error when accessing file"]}, {"category": "DocumentationProduct", "description": "Archive of previous GWAS Catalog diagram versions (SVG format)", "format": "svg", "id": "gwascatalog.diagram.archive", "name": "GWAS Catalog Diagram Archive", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}], "product_url": "https://ftp.ebi.ac.uk/pub/databases/gwas/releases/latest/gwas-catalog-diagram-archive.zip", "warnings": ["File was not able to be retrieved when checked on 2026-05-19: HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2026-03-30_ HTTP 404 error when accessing file"]}, {"category": "DocumentationProduct", "description": "Harmonised summary statistics landing page (FTP directory containing per-study summary statistics under CC0 where available)", "id": "gwascatalog.summary_statistics.ftp", "name": "GWAS Catalog Summary Statistics FTP", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}], "product_url": "ftp://ftp.ebi.ac.uk/pub/databases/gwas/summary_statistics/", "warnings": ["File was not able to be retrieved when checked on 2025-11-26_ Error connecting to URL_ No connection adapters were found for 'ftp_//ftp.ebi.ac.uk/pub/databases/gwas/summary_statistics/'"]}, {"category": "GraphProduct", "description": "GWASCatalog Automat", "format": "kgx-jsonl", "id": "automat.gwascatalog", "infores_id": "automat-gwas-catalog", "name": "gwascatalog_automat", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "automat"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}], "product_url": "https://stars.renci.org/var/plater/bl-4.2.1/GWASCatalog_Automat/e30aceb322a33462/"}, {"category": "GraphProduct", "description": "Neo4j database dump of the Clinical Knowledge Graph and additional relationships", "dump_format": "neo4j", "edge_count": 220000000, "format": "mixed", "id": "clinicalkg.graph", "name": "CKG Graph Dump", "node_count": 16000000, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bto"}, {"relation_type": "prov:hadPrimarySource", "source": "cancer-genome-interpreter"}, {"relation_type": "prov:hadPrimarySource", "source": "clinicalkg"}, {"relation_type": "prov:hadPrimarySource", "source": "corum"}, {"relation_type": "prov:hadPrimarySource", "source": "dgidb"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "foodb"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "mi"}, {"relation_type": "prov:hadPrimarySource", "source": "mod"}, {"relation_type": "prov:hadPrimarySource", "source": "ms"}, {"relation_type": "prov:hadPrimarySource", "source": "mutationds"}, {"relation_type": "prov:hadPrimarySource", "source": "oncokb"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "phosphositeplus"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "signor"}, {"relation_type": "prov:hadPrimarySource", "source": "smpdb"}, {"relation_type": "prov:hadPrimarySource", "source": "snomedct"}, {"relation_type": "prov:hadPrimarySource", "source": "stitch"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "uo"}], "product_url": "https://data.mendeley.com/datasets/mrcf7f4tc2/1"}, {"category": "ProcessProduct", "description": "INDRA CoGEx is a graph database integrating causal relations, ontological relations, properties, and data, assembled at scale automatically from the scientific literature and structured sources. This is the code to build the graph.", "id": "indra.cogex.code", "name": "INDRA CoGEx Build Code", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "nihreporter"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmed"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "cellmarker"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "ccle"}, {"relation_type": "prov:hadPrimarySource", "source": "clinicaltrialsgov"}, {"relation_type": "prov:hadPrimarySource", "source": "indra"}], "product_url": "https://github.com/gyorilab/indra_cogex"}, {"category": "GraphProduct", "description": "The SPOKE knowledge graph containing nodes and edges from multiple biomedical data sources.", "id": "spoke.graph", "name": "SPOKE Graph", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "bindingdb"}, {"relation_type": "prov:hadPrimarySource", "source": "bv-brc"}, {"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "civic"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "clinicaltrialsgov"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "drugcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "foodb"}, {"relation_type": "prov:hadPrimarySource", "source": "gdsc"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "lincs-l1000"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "metacyc"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}, {"relation_type": "prov:hadPrimarySource", "source": "pathophenodb"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "pid"}, {"relation_type": "prov:hadPrimarySource", "source": "protcid"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmed"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "spoke"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}]}, {"category": "GraphProduct", "description": "DisGeNET data, including gene to disease associations and variant to disease associations (requires registration and subscription).", "id": "disgenet.data", "name": "DisGeNET Data", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "clingen"}, {"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "mgd"}, {"relation_type": "prov:hadPrimarySource", "source": "rgd"}, {"relation_type": "prov:hadPrimarySource", "source": "orphanet"}, {"relation_type": "prov:hadPrimarySource", "source": "psygenet"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "phewascat"}, {"relation_type": "prov:hadPrimarySource", "source": "ukbiobank"}, {"relation_type": "prov:hadPrimarySource", "source": "finngen"}, {"relation_type": "prov:hadPrimarySource", "source": "clinicaltrialsgov"}], "product_url": "https://www.disgenet.com/"}, {"category": "GraphicalInterface", "description": "A browser interface for a knowledge graph for Alzheimer's Disease.", "format": "http", "id": "alzkb.browser", "name": "AlzKB Graph Database Browser", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "alzkb"}, {"relation_type": "prov:hadPrimarySource", "source": "aop-db"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "dsstox"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "hrpimp"}, {"relation_type": "prov:hadPrimarySource", "source": "lincs-l1000"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "pharmacotherapydb"}, {"relation_type": "prov:hadPrimarySource", "source": "pid"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}], "product_url": "https://alzkb.ai:7473/login", "secondary_source": [{"relation_type": "prov:wasInfluencedBy", "source": "hetionet"}]}, {"category": "GraphProduct", "description": "Memgraph data release for AlzKB.", "id": "alzkb.data", "name": "AlzKB Data Release (Version 2.0.0)", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "alzkb"}, {"relation_type": "prov:hadPrimarySource", "source": "aop-db"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "dsstox"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "hrpimp"}, {"relation_type": "prov:hadPrimarySource", "source": "lincs-l1000"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "pharmacotherapydb"}, {"relation_type": "prov:hadPrimarySource", "source": "pid"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}], "product_url": "https://github.com/EpistasisLab/AlzKB/releases/tag/v2.0.0", "secondary_source": [{"relation_type": "prov:wasInfluencedBy", "source": "hetionet"}]}, {"category": "Product", "description": "The EPA has developed the Adverse Outcome Pathway Database (AOP-DB) to better characterize adverse outcomes of toxicological interest that are relevant to human health and the environment. Since its inception, the AOP-DB has been developed with the aim of integrating AOP molecular target information with other publicly available datasets to facilitate computational analyses of AOP information.", "id": "aop-db.data", "name": "AOP-DB Data", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "1000genomes"}, {"relation_type": "prov:hadPrimarySource", "source": "aop-db"}, {"relation_type": "prov:hadPrimarySource", "source": "aop-wiki"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "toxcast"}], "product_url": "https://catalog.data.gov/dataset/adverse-outcome-pathway-database-aop-db-version-2"}, {"category": "GraphProduct", "description": "Neo4j database dump of the Clinical Knowledge Graph and additional relationships", "dump_format": "neo4j", "edge_count": 220000000, "format": "mixed", "id": "cancer-genome-interpreter.clinicalkg.graph", "name": "CKG Graph Dump", "node_count": 16000000, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "stitch"}, {"relation_type": "prov:hadPrimarySource", "source": "smpdb"}, {"relation_type": "prov:hadPrimarySource", "source": "signor"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "phosphositeplus"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "oncokb"}, {"relation_type": "prov:hadPrimarySource", "source": "mutationds"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "foodb"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "dgidb"}, {"relation_type": "prov:hadPrimarySource", "source": "corum"}, {"relation_type": "prov:hadPrimarySource", "source": "cancer-genome-interpreter"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "bto"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "snomedct"}, {"relation_type": "prov:hadPrimarySource", "source": "mod"}, {"relation_type": "prov:hadPrimarySource", "source": "mi"}, {"relation_type": "prov:hadPrimarySource", "source": "ms"}, {"relation_type": "prov:hadPrimarySource", "source": "uo"}], "product_url": "https://data.mendeley.com/datasets/mrcf7f4tc2/1"}, {"category": "Product", "description": "Genetic variant data from ClinVar, dbSNP, GWAS Catalog and other variant databases", "format": "http", "id": "genecards.variant.data", "name": "GeneCards Variant Data", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "dbsnp"}, {"relation_type": "prov:hadPrimarySource", "source": "genecards"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}], "product_url": "https://www.genecards.org/", "warnings": ["File was not able to be retrieved when checked on 2026-05-19: HTTP 403 error when accessing file", "File was not able to be retrieved when checked on 2026-03-30_ HTTP 403 error when accessing file"]}, {"category": "GraphProduct", "description": "Graph database dump and additional relationship files for the Clinical Knowledge Graph.", "format": "neo4j", "id": "ckg.graph", "name": "CKG Graph Database Dump", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bto"}, {"relation_type": "prov:hadPrimarySource", "source": "cancer-genome-interpreter"}, {"relation_type": "prov:hadPrimarySource", "source": "ckg"}, {"relation_type": "prov:hadPrimarySource", "source": "corum"}, {"relation_type": "prov:hadPrimarySource", "source": "dgidb"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "foodb"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "mi"}, {"relation_type": "prov:hadPrimarySource", "source": "mod"}, {"relation_type": "prov:hadPrimarySource", "source": "ms"}, {"relation_type": "prov:hadPrimarySource", "source": "mutationds"}, {"relation_type": "prov:hadPrimarySource", "source": "oncokb"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "phosphositeplus"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "signor"}, {"relation_type": "prov:hadPrimarySource", "source": "smpdb"}, {"relation_type": "prov:hadPrimarySource", "source": "snomedct"}, {"relation_type": "prov:hadPrimarySource", "source": "stitch"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "uo"}], "product_url": "https://data.mendeley.com/datasets/mrcf7f4tc2/1"}]}