PharmGKB
PharmGKB collects, curates and disseminates knowledge about clinically actionable gene-drug associations and genotype-phenotype relationships.
[{"category": "Organization", "contact_details": [{"contact_type": "email", "value": "feedback@pharmgkb.org"}], "label": "PharmGKB"}]
[{"category": "Product", "compression": "zip", "description": "Clinical annotation summaries", "format": "tsv", "id": "pharmgkb.clinicalannotations", "name": "PharmKB Clinical Annotations", "product_file_size": 1231768, "product_url": "https://api.pharmgkb.org/v1/download/file/data/clinicalAnnotations.zip"}, {"category": "Product", "compression": "zip", "description": "Level of evidence 1-2 clinical annotation summaries", "format": "tsv", "id": "pharmgkb.clinicalannotations.loe", "name": "PharmKB Clinical Annotations (LOE 1-2)", "product_file_size": 271314, "product_url": "https://api.pharmgkb.org/v1/download/file/data/clinicalAnnotations_LOE1-2.zip"}, {"category": "Product", "compression": "zip", "description": "Variant annotation summary", "format": "tsv", "id": "pharmgkb.variantannotations", "name": "PharmKB Variant Annotations", "product_file_size": 4071535, "product_url": "https://api.pharmgkb.org/v1/download/file/data/variantAnnotations.zip"}, {"category": "Product", "compression": "zip", "description": "Relationships summarized from PharmGKB annotations", "format": "tsv", "id": "pharmgkb.relationships", "name": "PharmKB Relationships", "product_file_size": 1261136, "product_url": "https://api.pharmgkb.org/v1/download/file/data/relationships.zip"}, {"category": "Product", "compression": "zip", "description": "Detailed clinical guideline annotations", "format": "json", "id": "pharmgkb.guidelineannotations", "name": "PharmKB Clinical Guideline Annotations", "product_file_size": 811786, "product_url": "https://api.pharmgkb.org/v1/download/file/data/guidelineAnnotations.json.zip"}, {"category": "Product", "compression": "zip", "description": "Drug label annotations", "format": "tsv", "id": "pharmgkb.druglabels", "name": "PharmKB Drug Label Annotations", "product_file_size": 55911, "product_url": "https://api.pharmgkb.org/v1/download/file/data/drugLabels.zip"}, {"category": "Product", "compression": "zip", "description": "Pathways data in BioPax XML format", "format": "xml", "id": "pharmgkb.pathways.biopax", "name": "PharmKB Pathways (BioPax)", "product_file_size": 645142, "product_url": "https://api.pharmgkb.org/v1/download/file/data/pathways-biopax.zip"}, {"category": "Product", "compression": "zip", "description": "Pathways data in TSV format", "format": "tsv", "id": "pharmgkb.pathways.tsv", "name": "PharmKB Pathways (TSV)", "product_file_size": 195089, "product_url": "https://api.pharmgkb.org/v1/download/file/data/pathways-tsv.zip"}, {"category": "Product", "compression": "zip", "description": "Pathways data in JSON format", "format": "json", "id": "pharmgkb.pathways.json", "name": "PharmKB Pathways (JSON)", "product_file_size": 1873189, "product_url": "https://api.pharmgkb.org/v1/download/file/data/pathways.json.zip"}, {"category": "Product", "compression": "zip", "description": "List of variant-drug pairs and level of evidence for all clinical annotations", "format": "tsv", "id": "pharmgkb.clinicalvariants", "name": "PharmKB Clinical Variants", "product_file_size": 74321, "product_url": "https://api.pharmgkb.org/v1/download/file/data/clinicalVariants.zip"}, {"category": "Product", "compression": "zip", "description": "List of objects that occur in PharmGKB literature annotations and pathways", "format": "tsv", "id": "pharmgkb.literatureoccurrences", "name": "PharmKB Literature Occurrences", "product_file_size": 1918901, "product_url": "https://api.pharmgkb.org/v1/download/file/data/occurrences.zip"}, {"category": "Product", "compression": "zip", "description": "Automatically identified possible relationships between variants and drugs from literature", "format": "tsv", "id": "pharmgkb.automatedannotations", "name": "PharmKB Automated Annotations", "product_file_size": 1881822, "product_url": "https://api.pharmgkb.org/v1/download/file/data/automated_annotations.zip", "warnings": []}, {"category": "Product", "compression": "zip", "description": "Summary of gene information used by PharmGKB and annotations", "format": "tsv", "id": "pharmgkb.genes", "name": "PharmKB Genes", "product_file_size": 2901222, "product_url": "https://api.pharmgkb.org/v1/download/file/data/genes.zip", "warnings": []}, {"category": "Product", "compression": "zip", "description": "Summary of variants annotated by PharmGKB that have been tracked in dbSNP", "format": "tsv", "id": "pharmgkb.variants", "name": "PharmKB Variants", "product_file_size": 850310, "product_url": "https://api.pharmgkb.org/v1/download/file/data/variants.zip"}, {"category": "Product", "compression": "zip", "description": "Summaries of drug information annotated by PharmGKB", "format": "tsv", "id": "pharmgkb.drugs", "name": "PharmKB Drugs", "product_file_size": 717666, "product_url": "https://api.pharmgkb.org/v1/download/file/data/drugs.zip", "warnings": []}, {"category": "Product", "compression": "zip", "description": "Summaries of chemical information annotated by PharmGKB", "format": "tsv", "id": "pharmgkb.chemicals", "name": "PharmKB Chemicals", "product_file_size": 836804, "product_url": "https://api.pharmgkb.org/v1/download/file/data/chemicals.zip", "warnings": []}, {"category": "Product", "compression": "zip", "description": "Summary of disease and other phenotypes annotated by PharmGKB", "format": "tsv", "id": "pharmgkb.phenotypes", "name": "PharmKB Phenotypes", "product_file_size": 186836, "product_url": "https://api.pharmgkb.org/v1/download/file/data/phenotypes.zip"}, {"category": "Product", "description": "Archive of papers of interest from May 2006 to April 2017", "format": "csv", "id": "pharmgkb.papers", "name": "PharmKB Papers of Interest Archive", "product_file_size": 126005, "product_url": "https://api.pharmgkb.org/v1/download/file/attachment/PapersOfInterestArchive.csv", "warnings": []}, {"category": "Product", "compression": "zip", "description": "Haplotype frequencies from UK Biobank dataset using PharmCAT", "format": "tsv", "id": "pharmgkb.haplotypefrequencies.ukbb", "name": "PharmKB UK Biobank Frequencies", "product_file_size": 30925, "product_url": "https://api.pharmgkb.org/v1/download/file/data/pharmgkb_haplotype_frequencies_UKBB.zip", "warnings": []}, {"category": "Product", "compression": "zip", "description": "Haplotype, phenotype, and activity score frequencies from AllOfUs dataset using PharmCAT", "format": "tsv", "id": "pharmgkb.haplotypefrequencies.allofus", "name": "PharmKB AllOfUs Biobank Frequencies", "product_file_size": 58421, "product_url": "https://api.pharmgkb.org/v1/download/file/data/pharmgkb_haplotype_frequencies_AllOfUs.zip"}, {"category": "Product", "description": "pharmgkb.disease OBO", "format": "obo", "id": "obo-db-ingest.pharmgkb.disease.obo", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.disease OBO", "original_source": ["pharmgkb"], "product_file_size": 148487, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.disease/pharmgkb.disease.obo", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.disease OWL", "format": "owl", "id": "obo-db-ingest.pharmgkb.disease.owl", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.disease OWL", "original_source": ["pharmgkb"], "product_file_size": 178658, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.disease/pharmgkb.disease.owl", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.disease OBO Graph JSON", "format": "json", "id": "obo-db-ingest.pharmgkb.disease.json", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.disease OBO Graph JSON", "original_source": ["pharmgkb"], "product_file_size": 180080, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.disease/pharmgkb.disease.json", "secondary_source": ["obo-db-ingest"]}, {"category": "MappingProduct", "description": "pharmgkb.disease SSSOM", "format": "sssom", "id": "obo-db-ingest.pharmgkb.disease.sssom.tsv", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.disease SSSOM", "original_source": ["pharmgkb"], "product_file_size": 62271, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.disease/pharmgkb.disease.sssom.tsv", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.pathways OBO", "format": "obo", "id": "obo-db-ingest.pharmgkb.pathways.obo", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.pathways OBO", "original_source": ["pharmgkb"], "product_file_size": 2776, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.pathways/pharmgkb.pathways.obo", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.pathways OWL", "format": "owl", "id": "obo-db-ingest.pharmgkb.pathways.owl", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.pathways OWL", "original_source": ["pharmgkb"], "product_file_size": 3784, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.pathways/pharmgkb.pathways.owl", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.pathways OBO Graph JSON", "format": "json", "id": "obo-db-ingest.pharmgkb.pathways.json", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.pathways OBO Graph JSON", "original_source": ["pharmgkb"], "product_file_size": 2947, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.pathways/pharmgkb.pathways.json", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.drug OBO", "format": "obo", "id": "obo-db-ingest.pharmgkb.drug.obo", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.drug OBO", "original_source": ["pharmgkb"], "product_file_size": 465956, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.drug/pharmgkb.drug.obo", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.drug OWL", "format": "owl", "id": "obo-db-ingest.pharmgkb.drug.owl", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.drug OWL", "original_source": ["pharmgkb"], "product_file_size": 531402, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.drug/pharmgkb.drug.owl", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.drug OBO Graph JSON", "format": "json", "id": "obo-db-ingest.pharmgkb.drug.json", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.drug OBO Graph JSON", "original_source": ["pharmgkb"], "product_file_size": 552557, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.drug/pharmgkb.drug.json", "secondary_source": ["obo-db-ingest"]}, {"category": "MappingProduct", "description": "pharmgkb.drug SSSOM", "format": "sssom", "id": "obo-db-ingest.pharmgkb.drug.sssom.tsv", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.drug SSSOM", "original_source": ["pharmgkb"], "product_file_size": 202221, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.drug/pharmgkb.drug.sssom.tsv", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.gene OBO", "format": "obo", "id": "obo-db-ingest.pharmgkb.gene.obo", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.gene OBO", "original_source": ["pharmgkb"], "product_file_size": 2137084, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.gene/pharmgkb.gene.obo", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.gene OWL", "format": "owl", "id": "obo-db-ingest.pharmgkb.gene.owl", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.gene OWL", "original_source": ["pharmgkb"], "product_file_size": 2542592, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.gene/pharmgkb.gene.owl", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.gene OBO Graph JSON", "format": "json", "id": "obo-db-ingest.pharmgkb.gene.json", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.gene OBO Graph JSON", "original_source": ["pharmgkb"], "product_file_size": 2668332, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.gene/pharmgkb.gene.json", "secondary_source": ["obo-db-ingest"]}, {"category": "MappingProduct", "description": "pharmgkb.gene SSSOM", "format": "sssom", "id": "obo-db-ingest.pharmgkb.gene.sssom.tsv", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.gene SSSOM", "original_source": ["pharmgkb"], "product_file_size": 1621905, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.gene/pharmgkb.gene.sssom.tsv", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.variant OBO", "format": "obo", "id": "obo-db-ingest.pharmgkb.variant.obo", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.variant OBO", "original_source": ["pharmgkb"], "product_file_size": 102072, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.variant/pharmgkb.variant.obo", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.variant OWL", "format": "owl", "id": "obo-db-ingest.pharmgkb.variant.owl", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.variant OWL", "original_source": ["pharmgkb"], "product_file_size": 107225, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.variant/pharmgkb.variant.owl", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.variant OBO Graph JSON", "format": "json", "id": "obo-db-ingest.pharmgkb.variant.json", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.variant OBO Graph JSON", "original_source": ["pharmgkb"], "product_file_size": 92435, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.variant/pharmgkb.variant.json", "secondary_source": ["obo-db-ingest"]}, {"category": "MappingProduct", "description": "pharmgkb.variant SSSOM", "format": "sssom", "id": "obo-db-ingest.pharmgkb.variant.sssom.tsv", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.variant SSSOM", "original_source": ["pharmgkb"], "product_file_size": 56599, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.variant/pharmgkb.variant.sssom.tsv", "secondary_source": ["obo-db-ingest"]}, {"category": "GraphProduct", "description": "Cleaned benchmark graph (PharmKG-8k) with typed relations between genes, chemicals, and diseases", "edge_count": 500958, "id": "pharmkg.graph", "name": "PharmKG graph", "node_count": 7603, "original_source": ["omim", "drugbank", "pharmgkb", "ttd", "sider", "humannet", "ncbigene", "mesh", "pubchem", "gnbr", "biogps", "connectivitymap"], "product_url": "https://zenodo.org/record/4077338", "secondary_source": ["pharmkg"]}, {"category": "Product", "description": "Pharmacogenomics data from PharmGKB, DrugBank and other pharmacogenomics sources", "format": "http", "id": "genecards.pharmacogenomics", "name": "GeneCards Pharmacogenomics Data", "original_source": ["pharmgkb", "drugbank"], "product_url": "https://www.genecards.org/", "warnings": ["File was not able to be retrieved when checked on 2026-04-07: HTTP 403 error when accessing file", "File was not able to be retrieved when checked on 2026-03-30_ HTTP 403 error when accessing file", "File was not able to be retrieved when checked on 2026-04-10: HTTP 403 error when accessing file"]}, {"category": "GraphProduct", "description": "The integrative Biomedical Knowledge Hub (iBKH) knowledge graph, harmonizing and integrating information from diverse biomedical resources including DRKG, iDISK, and multiple databases (BRENDA, CTD, DrugBank, KEGG, PharmGKB, Reactome, SIDER, and others).", "id": "ibkh.graph", "name": "iBKH Knowledge Graph", "original_source": ["drkg", "idisk", "brenda", "ctd", "drugbank", "kegg", "pharmgkb", "reactome", "sider", "tissues", "bgee", "doid", "uberon", "cl", "hgnc", "chembl", "chebi"]}, {"category": "Product", "description": "pharmgkb.disease Nodes TSV", "format": "tsv", "id": "obo-db-ingest.pharmgkb.disease.tsv", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.disease Nodes TSV", "original_source": ["pharmgkb"], "product_file_size": 85777, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.disease/pharmgkb.disease.tsv", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.drug Nodes TSV", "format": "tsv", "id": "obo-db-ingest.pharmgkb.drug.tsv", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.drug Nodes TSV", "original_source": ["pharmgkb"], "product_file_size": 55062, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.drug/pharmgkb.drug.tsv", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.gene Nodes TSV", "format": "tsv", "id": "obo-db-ingest.pharmgkb.gene.tsv", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.gene Nodes TSV", "original_source": ["pharmgkb"], "product_file_size": 757356, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.gene/pharmgkb.gene.tsv", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.pathways Nodes TSV", "format": "tsv", "id": "obo-db-ingest.pharmgkb.pathways.tsv", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.pathways Nodes TSV", "original_source": ["pharmgkb"], "product_file_size": 2140, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.pathways/pharmgkb.pathways.tsv", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.variant Nodes TSV", "format": "tsv", "id": "obo-db-ingest.pharmgkb.variant.tsv", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.variant Nodes TSV", "original_source": ["pharmgkb"], "product_file_size": 19203, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.variant/pharmgkb.variant.tsv", "secondary_source": ["obo-db-ingest"]}]
{"activity_status": "active", "category": "Resource", "contacts": [{"category": "Organization", "contact_details": [{"contact_type": "email", "value": "feedback@pharmgkb.org"}], "label": "PharmGKB"}], "creation_date": "2025-05-01T00:00:00Z", "description": "PharmGKB collects, curates and disseminates knowledge about clinically actionable gene-drug associations and genotype-phenotype relationships.", "domains": ["health", "chemistry and biochemistry", "pharmacology", "genomics", "precision medicine"], "homepage_url": "https://www.pharmgkb.org/", "id": "pharmgkb", "infores_id": "pharmgkb", "last_modified_date": "2026-02-20T00:00:00Z", "layout": "resource_detail", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0", "logo": "https://mirrors.creativecommons.org/presskit/buttons/80x15/png/by-sa.png"}, "name": "PharmGKB", "products": [{"category": "Product", "compression": "zip", "description": "Clinical annotation summaries", "format": "tsv", "id": "pharmgkb.clinicalannotations", "name": "PharmKB Clinical Annotations", "product_file_size": 1231768, "product_url": "https://api.pharmgkb.org/v1/download/file/data/clinicalAnnotations.zip"}, {"category": "Product", "compression": "zip", "description": "Level of evidence 1-2 clinical annotation summaries", "format": "tsv", "id": "pharmgkb.clinicalannotations.loe", "name": "PharmKB Clinical Annotations (LOE 1-2)", "product_file_size": 271314, "product_url": "https://api.pharmgkb.org/v1/download/file/data/clinicalAnnotations_LOE1-2.zip"}, {"category": "Product", "compression": "zip", "description": "Variant annotation summary", "format": "tsv", "id": "pharmgkb.variantannotations", "name": "PharmKB Variant Annotations", "product_file_size": 4071535, "product_url": "https://api.pharmgkb.org/v1/download/file/data/variantAnnotations.zip"}, {"category": "Product", "compression": "zip", "description": "Relationships summarized from PharmGKB annotations", "format": "tsv", "id": "pharmgkb.relationships", "name": "PharmKB Relationships", "product_file_size": 1261136, "product_url": "https://api.pharmgkb.org/v1/download/file/data/relationships.zip"}, {"category": "Product", "compression": "zip", "description": "Detailed clinical guideline annotations", "format": "json", "id": "pharmgkb.guidelineannotations", "name": "PharmKB Clinical Guideline Annotations", "product_file_size": 811786, "product_url": "https://api.pharmgkb.org/v1/download/file/data/guidelineAnnotations.json.zip"}, {"category": "Product", "compression": "zip", "description": "Drug label annotations", "format": "tsv", "id": "pharmgkb.druglabels", "name": "PharmKB Drug Label Annotations", "product_file_size": 55911, "product_url": "https://api.pharmgkb.org/v1/download/file/data/drugLabels.zip"}, {"category": "Product", "compression": "zip", "description": "Pathways data in BioPax XML format", "format": "xml", "id": "pharmgkb.pathways.biopax", "name": "PharmKB Pathways (BioPax)", "product_file_size": 645142, "product_url": "https://api.pharmgkb.org/v1/download/file/data/pathways-biopax.zip"}, {"category": "Product", "compression": "zip", "description": "Pathways data in TSV format", "format": "tsv", "id": "pharmgkb.pathways.tsv", "name": "PharmKB Pathways (TSV)", "product_file_size": 195089, "product_url": "https://api.pharmgkb.org/v1/download/file/data/pathways-tsv.zip"}, {"category": "Product", "compression": "zip", "description": "Pathways data in JSON format", "format": "json", "id": "pharmgkb.pathways.json", "name": "PharmKB Pathways (JSON)", "product_file_size": 1873189, "product_url": "https://api.pharmgkb.org/v1/download/file/data/pathways.json.zip"}, {"category": "Product", "compression": "zip", "description": "List of variant-drug pairs and level of evidence for all clinical annotations", "format": "tsv", "id": "pharmgkb.clinicalvariants", "name": "PharmKB Clinical Variants", "product_file_size": 74321, "product_url": "https://api.pharmgkb.org/v1/download/file/data/clinicalVariants.zip"}, {"category": "Product", "compression": "zip", "description": "List of objects that occur in PharmGKB literature annotations and pathways", "format": "tsv", "id": "pharmgkb.literatureoccurrences", "name": "PharmKB Literature Occurrences", "product_file_size": 1918901, "product_url": "https://api.pharmgkb.org/v1/download/file/data/occurrences.zip"}, {"category": "Product", "compression": "zip", "description": "Automatically identified possible relationships between variants and drugs from literature", "format": "tsv", "id": "pharmgkb.automatedannotations", "name": "PharmKB Automated Annotations", "product_file_size": 1881822, "product_url": "https://api.pharmgkb.org/v1/download/file/data/automated_annotations.zip", "warnings": []}, {"category": "Product", "compression": "zip", "description": "Summary of gene information used by PharmGKB and annotations", "format": "tsv", "id": "pharmgkb.genes", "name": "PharmKB Genes", "product_file_size": 2901222, "product_url": "https://api.pharmgkb.org/v1/download/file/data/genes.zip", "warnings": []}, {"category": "Product", "compression": "zip", "description": "Summary of variants annotated by PharmGKB that have been tracked in dbSNP", "format": "tsv", "id": "pharmgkb.variants", "name": "PharmKB Variants", "product_file_size": 850310, "product_url": "https://api.pharmgkb.org/v1/download/file/data/variants.zip"}, {"category": "Product", "compression": "zip", "description": "Summaries of drug information annotated by PharmGKB", "format": "tsv", "id": "pharmgkb.drugs", "name": "PharmKB Drugs", "product_file_size": 717666, "product_url": "https://api.pharmgkb.org/v1/download/file/data/drugs.zip", "warnings": []}, {"category": "Product", "compression": "zip", "description": "Summaries of chemical information annotated by PharmGKB", "format": "tsv", "id": "pharmgkb.chemicals", "name": "PharmKB Chemicals", "product_file_size": 836804, "product_url": "https://api.pharmgkb.org/v1/download/file/data/chemicals.zip", "warnings": []}, {"category": "Product", "compression": "zip", "description": "Summary of disease and other phenotypes annotated by PharmGKB", "format": "tsv", "id": "pharmgkb.phenotypes", "name": "PharmKB Phenotypes", "product_file_size": 186836, "product_url": "https://api.pharmgkb.org/v1/download/file/data/phenotypes.zip"}, {"category": "Product", "description": "Archive of papers of interest from May 2006 to April 2017", "format": "csv", "id": "pharmgkb.papers", "name": "PharmKB Papers of Interest Archive", "product_file_size": 126005, "product_url": "https://api.pharmgkb.org/v1/download/file/attachment/PapersOfInterestArchive.csv", "warnings": []}, {"category": "Product", "compression": "zip", "description": "Haplotype frequencies from UK Biobank dataset using PharmCAT", "format": "tsv", "id": "pharmgkb.haplotypefrequencies.ukbb", "name": "PharmKB UK Biobank Frequencies", "product_file_size": 30925, "product_url": "https://api.pharmgkb.org/v1/download/file/data/pharmgkb_haplotype_frequencies_UKBB.zip", "warnings": []}, {"category": "Product", "compression": "zip", "description": "Haplotype, phenotype, and activity score frequencies from AllOfUs dataset using PharmCAT", "format": "tsv", "id": "pharmgkb.haplotypefrequencies.allofus", "name": "PharmKB AllOfUs Biobank Frequencies", "product_file_size": 58421, "product_url": "https://api.pharmgkb.org/v1/download/file/data/pharmgkb_haplotype_frequencies_AllOfUs.zip"}, {"category": "Product", "description": "pharmgkb.disease OBO", "format": "obo", "id": "obo-db-ingest.pharmgkb.disease.obo", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.disease OBO", "original_source": ["pharmgkb"], "product_file_size": 148487, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.disease/pharmgkb.disease.obo", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.disease OWL", "format": "owl", "id": "obo-db-ingest.pharmgkb.disease.owl", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.disease OWL", "original_source": ["pharmgkb"], "product_file_size": 178658, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.disease/pharmgkb.disease.owl", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.disease OBO Graph JSON", "format": "json", "id": "obo-db-ingest.pharmgkb.disease.json", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.disease OBO Graph JSON", "original_source": ["pharmgkb"], "product_file_size": 180080, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.disease/pharmgkb.disease.json", "secondary_source": ["obo-db-ingest"]}, {"category": "MappingProduct", "description": "pharmgkb.disease SSSOM", "format": "sssom", "id": "obo-db-ingest.pharmgkb.disease.sssom.tsv", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.disease SSSOM", "original_source": ["pharmgkb"], "product_file_size": 62271, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.disease/pharmgkb.disease.sssom.tsv", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.pathways OBO", "format": "obo", "id": "obo-db-ingest.pharmgkb.pathways.obo", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.pathways OBO", "original_source": ["pharmgkb"], "product_file_size": 2776, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.pathways/pharmgkb.pathways.obo", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.pathways OWL", "format": "owl", "id": "obo-db-ingest.pharmgkb.pathways.owl", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.pathways OWL", "original_source": ["pharmgkb"], "product_file_size": 3784, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.pathways/pharmgkb.pathways.owl", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.pathways OBO Graph JSON", "format": "json", "id": "obo-db-ingest.pharmgkb.pathways.json", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.pathways OBO Graph JSON", "original_source": ["pharmgkb"], "product_file_size": 2947, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.pathways/pharmgkb.pathways.json", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.drug OBO", "format": "obo", "id": "obo-db-ingest.pharmgkb.drug.obo", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.drug OBO", "original_source": ["pharmgkb"], "product_file_size": 465956, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.drug/pharmgkb.drug.obo", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.drug OWL", "format": "owl", "id": "obo-db-ingest.pharmgkb.drug.owl", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.drug OWL", "original_source": ["pharmgkb"], "product_file_size": 531402, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.drug/pharmgkb.drug.owl", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.drug OBO Graph JSON", "format": "json", "id": "obo-db-ingest.pharmgkb.drug.json", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.drug OBO Graph JSON", "original_source": ["pharmgkb"], "product_file_size": 552557, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.drug/pharmgkb.drug.json", "secondary_source": ["obo-db-ingest"]}, {"category": "MappingProduct", "description": "pharmgkb.drug SSSOM", "format": "sssom", "id": "obo-db-ingest.pharmgkb.drug.sssom.tsv", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.drug SSSOM", "original_source": ["pharmgkb"], "product_file_size": 202221, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.drug/pharmgkb.drug.sssom.tsv", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.gene OBO", "format": "obo", "id": "obo-db-ingest.pharmgkb.gene.obo", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.gene OBO", "original_source": ["pharmgkb"], "product_file_size": 2137084, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.gene/pharmgkb.gene.obo", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.gene OWL", "format": "owl", "id": "obo-db-ingest.pharmgkb.gene.owl", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.gene OWL", "original_source": ["pharmgkb"], "product_file_size": 2542592, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.gene/pharmgkb.gene.owl", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.gene OBO Graph JSON", "format": "json", "id": "obo-db-ingest.pharmgkb.gene.json", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.gene OBO Graph JSON", "original_source": ["pharmgkb"], "product_file_size": 2668332, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.gene/pharmgkb.gene.json", "secondary_source": ["obo-db-ingest"]}, {"category": "MappingProduct", "description": "pharmgkb.gene SSSOM", "format": "sssom", "id": "obo-db-ingest.pharmgkb.gene.sssom.tsv", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.gene SSSOM", "original_source": ["pharmgkb"], "product_file_size": 1621905, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.gene/pharmgkb.gene.sssom.tsv", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.variant OBO", "format": "obo", "id": "obo-db-ingest.pharmgkb.variant.obo", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.variant OBO", "original_source": ["pharmgkb"], "product_file_size": 102072, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.variant/pharmgkb.variant.obo", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.variant OWL", "format": "owl", "id": "obo-db-ingest.pharmgkb.variant.owl", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.variant OWL", "original_source": ["pharmgkb"], "product_file_size": 107225, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.variant/pharmgkb.variant.owl", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.variant OBO Graph JSON", "format": "json", "id": "obo-db-ingest.pharmgkb.variant.json", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.variant OBO Graph JSON", "original_source": ["pharmgkb"], "product_file_size": 92435, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.variant/pharmgkb.variant.json", "secondary_source": ["obo-db-ingest"]}, {"category": "MappingProduct", "description": "pharmgkb.variant SSSOM", "format": "sssom", "id": "obo-db-ingest.pharmgkb.variant.sssom.tsv", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.variant SSSOM", "original_source": ["pharmgkb"], "product_file_size": 56599, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.variant/pharmgkb.variant.sssom.tsv", "secondary_source": ["obo-db-ingest"]}, {"category": "GraphProduct", "description": "Cleaned benchmark graph (PharmKG-8k) with typed relations between genes, chemicals, and diseases", "edge_count": 500958, "id": "pharmkg.graph", "name": "PharmKG graph", "node_count": 7603, "original_source": ["omim", "drugbank", "pharmgkb", "ttd", "sider", "humannet", "ncbigene", "mesh", "pubchem", "gnbr", "biogps", "connectivitymap"], "product_url": "https://zenodo.org/record/4077338", "secondary_source": ["pharmkg"]}, {"category": "Product", "description": "Pharmacogenomics data from PharmGKB, DrugBank and other pharmacogenomics sources", "format": "http", "id": "genecards.pharmacogenomics", "name": "GeneCards Pharmacogenomics Data", "original_source": ["pharmgkb", "drugbank"], "product_url": "https://www.genecards.org/", "warnings": ["File was not able to be retrieved when checked on 2026-04-07: HTTP 403 error when accessing file", "File was not able to be retrieved when checked on 2026-03-30_ HTTP 403 error when accessing file", "File was not able to be retrieved when checked on 2026-04-10: HTTP 403 error when accessing file"]}, {"category": "GraphProduct", "description": "The integrative Biomedical Knowledge Hub (iBKH) knowledge graph, harmonizing and integrating information from diverse biomedical resources including DRKG, iDISK, and multiple databases (BRENDA, CTD, DrugBank, KEGG, PharmGKB, Reactome, SIDER, and others).", "id": "ibkh.graph", "name": "iBKH Knowledge Graph", "original_source": ["drkg", "idisk", "brenda", "ctd", "drugbank", "kegg", "pharmgkb", "reactome", "sider", "tissues", "bgee", "doid", "uberon", "cl", "hgnc", "chembl", "chebi"]}, {"category": "Product", "description": "pharmgkb.disease Nodes TSV", "format": "tsv", "id": "obo-db-ingest.pharmgkb.disease.tsv", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.disease Nodes TSV", "original_source": ["pharmgkb"], "product_file_size": 85777, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.disease/pharmgkb.disease.tsv", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.drug Nodes TSV", "format": "tsv", "id": "obo-db-ingest.pharmgkb.drug.tsv", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.drug Nodes TSV", "original_source": ["pharmgkb"], "product_file_size": 55062, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.drug/pharmgkb.drug.tsv", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.gene Nodes TSV", "format": "tsv", "id": "obo-db-ingest.pharmgkb.gene.tsv", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.gene Nodes TSV", "original_source": ["pharmgkb"], "product_file_size": 757356, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.gene/pharmgkb.gene.tsv", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.pathways Nodes TSV", "format": "tsv", "id": "obo-db-ingest.pharmgkb.pathways.tsv", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.pathways Nodes TSV", "original_source": ["pharmgkb"], "product_file_size": 2140, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.pathways/pharmgkb.pathways.tsv", "secondary_source": ["obo-db-ingest"]}, {"category": "Product", "description": "pharmgkb.variant Nodes TSV", "format": "tsv", "id": "obo-db-ingest.pharmgkb.variant.tsv", "license": {"id": "https://creativecommons.org/licenses/by-sa/4.0/", "label": "CC-BY-SA-4.0"}, "name": "pharmgkb.variant Nodes TSV", "original_source": ["pharmgkb"], "product_file_size": 19203, "product_url": "https://w3id.org/biopragmatics/resources/pharmgkb.variant/pharmgkb.variant.tsv", "secondary_source": ["obo-db-ingest"]}], "repository": "https://www.pharmgkb.org/downloads", "taxon": ["NCBITaxon:9606"]}