InterMine
InterMine is an open-source biological data warehouse system for integrating heterogeneous biological data sources and exposing them through customizable web interfaces, query templates, and RESTful web-service APIs.
[{"category": "Organization", "contact_details": [{"contact_type": "url", "value": "https://intermine.org/"}], "label": "InterMine"}]
[{"category": "DocumentationProduct", "description": "InterMine server documentation describing the biological data warehouse system, BlueGenes interface, data integration model, and web-service API.", "id": "intermine.documentation", "name": "InterMine Documentation", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "intermine"}], "product_url": "https://intermine.org/im-docs/docs/introduction/index"}, {"category": "Product", "description": "Open-source InterMine codebase for building biological data warehouses and deploying InterMine instances.", "id": "intermine.software", "name": "InterMine Software", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "intermine"}], "product_url": "https://github.com/intermine/intermine", "repository": "https://github.com/intermine/intermine"}, {"category": "GraphicalInterface", "description": "Public InterMine Registry listing deployed InterMine instances across organisms and life-science research areas.", "id": "intermine.registry", "name": "InterMine Registry", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "intermine"}], "product_url": "https://registry.intermine.org/"}, {"category": "ProgrammingInterface", "description": "InterMine Registry Swagger API for programmatically discovering public InterMine instances.", "id": "intermine.registry-api", "is_public": true, "name": "InterMine Registry API", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "intermine"}], "product_url": "https://intermine.org/developers/registry/"}, {"category": "GraphicalInterface", "description": "Web-based interface for searching, querying, and analyzing mouse data from MGI through MouseMine", "format": "http", "id": "mousemine.web", "name": "MouseMine Web Interface", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "mousemine"}], "product_url": "https://www.mousemine.org/mousemine/begin.do", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "mgi"}, {"relation_type": "prov:wasInfluencedBy", "source": "intermine"}]}, {"category": "ProgrammingInterface", "description": "Programmatic access to MouseMine data via RESTful web services with client libraries for Perl, Python, Ruby, and Java", "format": "http", "id": "mousemine.api", "is_public": true, "name": "MouseMine API", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "mousemine"}], "product_url": "https://www.mousemine.org/mousemine/api.do", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "mgi"}, {"relation_type": "prov:wasInfluencedBy", "source": "intermine"}]}, {"category": "GraphicalInterface", "description": "Pre-built query templates for common data retrieval tasks covering genome features, proteins, expression, interactions, phenotypes, diseases, and more", "format": "http", "id": "mousemine.templates", "name": "MouseMine Query Templates", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "mousemine"}], "product_url": "https://www.mousemine.org/mousemine/templates.do", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "mgi"}, {"relation_type": "prov:wasInfluencedBy", "source": "intermine"}]}, {"category": "GraphicalInterface", "description": "Custom query construction tool for building complex, iterative queries across multiple data types", "format": "http", "id": "mousemine.querybuilder", "name": "MouseMine QueryBuilder", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "mousemine"}], "product_url": "https://www.mousemine.org/mousemine/customQuery.do", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "mgi"}, {"relation_type": "prov:wasInfluencedBy", "source": "intermine"}]}]
{"activity_status": "active", "category": "DataSource", "contacts": [{"category": "Organization", "contact_details": [{"contact_type": "url", "value": "https://intermine.org/"}], "label": "InterMine"}], "creation_date": "2026-06-02T00:00:00Z", "description": "InterMine is an open-source biological data warehouse system for integrating heterogeneous biological data sources and exposing them through customizable web interfaces, query templates, and RESTful web-service APIs.", "domains": ["biomedical", "genomics", "information technology"], "homepage_url": "https://intermine.org/", "id": "intermine", "last_modified_date": "2026-06-03T00:00:00Z", "layout": "resource_detail", "license": {"id": "https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html", "label": "LGPL-2.1"}, "name": "InterMine", "products": [{"category": "DocumentationProduct", "description": "InterMine server documentation describing the biological data warehouse system, BlueGenes interface, data integration model, and web-service API.", "id": "intermine.documentation", "name": "InterMine Documentation", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "intermine"}], "product_url": "https://intermine.org/im-docs/docs/introduction/index"}, {"category": "Product", "description": "Open-source InterMine codebase for building biological data warehouses and deploying InterMine instances.", "id": "intermine.software", "name": "InterMine Software", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "intermine"}], "product_url": "https://github.com/intermine/intermine", "repository": "https://github.com/intermine/intermine"}, {"category": "GraphicalInterface", "description": "Public InterMine Registry listing deployed InterMine instances across organisms and life-science research areas.", "id": "intermine.registry", "name": "InterMine Registry", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "intermine"}], "product_url": "https://registry.intermine.org/"}, {"category": "ProgrammingInterface", "description": "InterMine Registry Swagger API for programmatically discovering public InterMine instances.", "id": "intermine.registry-api", "is_public": true, "name": "InterMine Registry API", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "intermine"}], "product_url": "https://intermine.org/developers/registry/"}, {"category": "GraphicalInterface", "description": "Web-based interface for searching, querying, and analyzing mouse data from MGI through MouseMine", "format": "http", "id": "mousemine.web", "name": "MouseMine Web Interface", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "mousemine"}], "product_url": "https://www.mousemine.org/mousemine/begin.do", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "mgi"}, {"relation_type": "prov:wasInfluencedBy", "source": "intermine"}]}, {"category": "ProgrammingInterface", "description": "Programmatic access to MouseMine data via RESTful web services with client libraries for Perl, Python, Ruby, and Java", "format": "http", "id": "mousemine.api", "is_public": true, "name": "MouseMine API", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "mousemine"}], "product_url": "https://www.mousemine.org/mousemine/api.do", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "mgi"}, {"relation_type": "prov:wasInfluencedBy", "source": "intermine"}]}, {"category": "GraphicalInterface", "description": "Pre-built query templates for common data retrieval tasks covering genome features, proteins, expression, interactions, phenotypes, diseases, and more", "format": "http", "id": "mousemine.templates", "name": "MouseMine Query Templates", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "mousemine"}], "product_url": "https://www.mousemine.org/mousemine/templates.do", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "mgi"}, {"relation_type": "prov:wasInfluencedBy", "source": "intermine"}]}, {"category": "GraphicalInterface", "description": "Custom query construction tool for building complex, iterative queries across multiple data types", "format": "http", "id": "mousemine.querybuilder", "name": "MouseMine QueryBuilder", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "mousemine"}], "product_url": "https://www.mousemine.org/mousemine/customQuery.do", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "mgi"}, {"relation_type": "prov:wasInfluencedBy", "source": "intermine"}]}], "publications": [{"authors": ["Richard N Smith", "Jelena Aleksic", "Daniela Butano", "Adrian Carr", "Sergio Contrino", "Fengyuan Hu"], "doi": "10.1093/bioinformatics/bts577", "id": "doi:10.1093/bioinformatics/bts577", "journal": "Bioinformatics", "preferred": true, "title": "InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data", "year": "2012"}, {"authors": ["Alex Kalderimis", "Mike Lyne", "Daniela Butano", "Sergio Contrino", "Kim Rutherford", "Paul Flicek"], "doi": "10.1093/nar/gku301", "id": "doi:10.1093/nar/gku301", "journal": "Nucleic Acids Research", "preferred": false, "title": "InterMine: extensive web services for modern biology", "year": "2014"}], "repository": "https://github.com/intermine/intermine"}