Alliance of Genome Resources
The Alliance of Genome Resources (Alliance) is a collaborative platform integrating model organism knowledge (FlyBase, MGD, RGD, SGD, WormBase, Xenbase, ZFIN) and Gene Ontology Consortium annotations to provide harmonized comparative genomics, gene function, phenotype, disease association, expression, orthology, and variant data for cross-species research and translation.
[{"category": "Organization", "contact_details": [{"contact_type": "url", "value": "https://www.alliancegenome.org/contact-us"}], "label": "Alliance of Genome Resources"}]
[{"category": "GraphicalInterface", "description": "Primary web portal for integrated cross-species search and exploration of genes, phenotypes, disease models, expression, variants, and orthology summaries", "format": "http", "id": "alliance.portal", "name": "Alliance Web Portal", "original_source": ["alliance"], "product_url": "https://www.alliancegenome.org/"}, {"category": "ProgrammingInterface", "description": "REST/JSON API providing programmatic access to integrated gene, orthology, phenotype, disease, expression, and variant endpoints", "id": "alliance.api", "is_public": true, "name": "Alliance API", "original_source": ["alliance"], "product_url": "https://www.alliancegenome.org/swagger-ui"}, {"category": "ProgrammingInterface", "description": "OpenAPI specification (machine-readable) for the Alliance REST API", "format": "json", "id": "alliance.openapi", "name": "Alliance OpenAPI Spec", "original_source": ["alliance"], "product_url": "https://www.alliancegenome.org/openapi"}, {"category": "GraphicalInterface", "description": "AllianceMine instance (InterMine-based) enabling advanced query building over integrated genomic data", "id": "alliance.mine", "name": "AllianceMine", "original_source": ["alliance"], "product_url": "https://www.alliancegenome.org/bluegenes/alliancemine"}, {"category": "GraphicalInterface", "description": "JBrowse 2 genome browser instance for interactive visualization of genomes, annotations, and variants across species", "id": "alliance.jbrowse2", "name": "Alliance JBrowse 2", "original_source": ["alliance"], "product_url": "https://www.alliancegenome.org/jbrowse2/"}, {"category": "GraphicalInterface", "description": "Textpresso literature mining interface for full-text and ontology term powered searches across curated publications", "id": "alliance.textpresso", "name": "Alliance Textpresso", "original_source": ["alliance"], "product_url": "https://www.alliancegenome.org/textpresso"}, {"category": "Product", "description": "Root directory for release-specific bulk data dumps (JSON, TSV, GAF, and other formats) for genes, orthology, phenotypes, disease associations, alleles, and related integrated datasets; individual per-file products can be programmatically enumerated in future updates", "id": "alliance.downloads", "name": "Alliance Data Downloads (Root)", "original_source": ["alliance"], "product_url": "https://download.alliancegenome.org/", "warnings": ["File was not able to be retrieved when checked on 2026-01-30_ No Content-Length header found", "File was not able to be retrieved when checked on 2026-01-28_ No Content-Length header found", "File was not able to be retrieved when checked on 2026-02-04: No Content-Length header found"]}, {"category": "GraphProduct", "description": "KGX Distribution of KG-Monarch", "edge_count": 15356321, "format": "kgx", "id": "kg-monarch.graph", "name": "KGX Distribution of KG-Monarch", "node_categories": ["biolink:AnatomicalEntity", "biolink:BiologicalProcess", "biolink:Case", "biolink:Cell", "biolink:CellularComponent", "biolink:ChemicalEntity", "biolink:Disease", "biolink:Gene", "biolink:Genotype", "biolink:LifeStage", "biolink:MolecularActivity", "biolink:MolecularEntity", "biolink:NamedThing", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:SequenceVariant"], "node_count": 1379605, "original_source": ["phenio", "alliance", "bgee", "biogrid", "clingen", "clinvar", "ctd", "dictybase", "go", "hp", "maxo", "panther", "pombase", "reactome", "string", "xenbase", "zfin"], "predicates": ["biolink:actively_involved_in", "biolink:acts_upstream_of", "biolink:acts_upstream_of_negative_effect", "biolink:acts_upstream_of_or_within", "biolink:acts_upstream_of_or_within_negative_effect", "biolink:acts_upstream_of_or_within_positive_effect", "biolink:acts_upstream_of_positive_effect", "biolink:ameliorates_condition", "biolink:associated_with_increased_likelihood_of", "biolink:caused_by", "biolink:causes", "biolink:colocalizes_with", "biolink:contraindicated_in", "biolink:contributes_to", "biolink:disease_has_location", "biolink:disrupts", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:genetically_associated_with", "biolink:has_disease", "biolink:has_gene", "biolink:has_mode_of_inheritance", "biolink:has_participant", "biolink:has_phenotype", "biolink:has_sequence_variant", "biolink:homologous_to", "biolink:interacts_with", "biolink:is_active_in", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:model_of", "biolink:orthologous_to", "biolink:part_of", "biolink:participates_in", "biolink:preventative_for_condition", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:treats_or_applied_or_studied_to_treat"], "product_file_size": 230877741, "product_url": "http://data.monarchinitiative.org/monarch-kg/latest/monarch-kg.tar.gz", "secondary_source": ["kg-monarch"]}, {"category": "GraphProduct", "description": "KGX JSON-Lines Distribution of KG-Monarch", "edge_count": 15356321, "format": "kgx-jsonl", "id": "kg-monarch.graph.jsonl", "name": "KGX JSON-L Distribution of KG-Monarch", "node_categories": ["biolink:AnatomicalEntity", "biolink:BiologicalProcess", "biolink:Case", "biolink:Cell", "biolink:CellularComponent", "biolink:ChemicalEntity", "biolink:Disease", "biolink:Gene", "biolink:Genotype", "biolink:LifeStage", "biolink:MolecularActivity", "biolink:MolecularEntity", "biolink:NamedThing", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:SequenceVariant"], "node_count": 1379605, "original_source": ["phenio", "alliance", "bgee", "biogrid", "clingen", "clinvar", "ctd", "dictybase", "go", "hp", "maxo", "panther", "pombase", "reactome", "string", "xenbase", "zfin"], "predicates": ["biolink:actively_involved_in", "biolink:acts_upstream_of", "biolink:acts_upstream_of_negative_effect", "biolink:acts_upstream_of_or_within", "biolink:acts_upstream_of_or_within_negative_effect", "biolink:acts_upstream_of_or_within_positive_effect", "biolink:acts_upstream_of_positive_effect", "biolink:ameliorates_condition", "biolink:associated_with_increased_likelihood_of", "biolink:caused_by", "biolink:causes", "biolink:colocalizes_with", "biolink:contraindicated_in", "biolink:contributes_to", "biolink:disease_has_location", "biolink:disrupts", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:genetically_associated_with", "biolink:has_disease", "biolink:has_gene", "biolink:has_mode_of_inheritance", "biolink:has_participant", "biolink:has_phenotype", "biolink:has_sequence_variant", "biolink:homologous_to", "biolink:interacts_with", "biolink:is_active_in", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:model_of", "biolink:orthologous_to", "biolink:part_of", "biolink:participates_in", "biolink:preventative_for_condition", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:treats_or_applied_or_studied_to_treat"], "product_file_size": 315667976, "product_url": "https://data.monarchinitiative.org/monarch-kg/latest/monarch-kg.jsonl.tar.gz", "secondary_source": ["kg-monarch"]}, {"category": "GraphProduct", "description": "RDF Distribution of KG-Monarch", "edge_count": 15356321, "format": "rdfxml", "id": "kg-monarch.graph.rdf", "name": "RDF Distribution of KG-Monarch", "node_categories": ["biolink:AnatomicalEntity", "biolink:BiologicalProcess", "biolink:Case", "biolink:Cell", "biolink:CellularComponent", "biolink:ChemicalEntity", "biolink:Disease", "biolink:Gene", "biolink:Genotype", "biolink:LifeStage", "biolink:MolecularActivity", "biolink:MolecularEntity", "biolink:NamedThing", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:SequenceVariant"], "node_count": 1379605, "original_source": ["phenio", "alliance", "bgee", "biogrid", "clingen", "clinvar", "ctd", "dictybase", "go", "hp", "maxo", "panther", "pombase", "reactome", "string", "xenbase", "zfin"], "predicates": ["biolink:actively_involved_in", "biolink:acts_upstream_of", "biolink:acts_upstream_of_negative_effect", "biolink:acts_upstream_of_or_within", "biolink:acts_upstream_of_or_within_negative_effect", "biolink:acts_upstream_of_or_within_positive_effect", "biolink:acts_upstream_of_positive_effect", "biolink:ameliorates_condition", "biolink:associated_with_increased_likelihood_of", "biolink:caused_by", "biolink:causes", "biolink:colocalizes_with", "biolink:contraindicated_in", "biolink:contributes_to", "biolink:disease_has_location", "biolink:disrupts", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:genetically_associated_with", "biolink:has_disease", "biolink:has_gene", "biolink:has_mode_of_inheritance", "biolink:has_participant", "biolink:has_phenotype", "biolink:has_sequence_variant", "biolink:homologous_to", "biolink:interacts_with", "biolink:is_active_in", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:model_of", "biolink:orthologous_to", "biolink:part_of", "biolink:participates_in", "biolink:preventative_for_condition", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:treats_or_applied_or_studied_to_treat"], "product_file_size": 879238775, "product_url": "https://data.monarchinitiative.org/monarch-kg/latest/monarch-kg.nt.gz", "secondary_source": ["kg-monarch"]}, {"category": "GraphProduct", "description": "Neo4j Dump of KG-Monarch", "dump_format": "neo4j", "edge_count": 15356321, "id": "kg-monarch.graph.neo4j", "name": "Neo4j Dump of KG-Monarch", "node_categories": ["biolink:AnatomicalEntity", "biolink:BiologicalProcess", "biolink:Case", "biolink:Cell", "biolink:CellularComponent", "biolink:ChemicalEntity", "biolink:Disease", "biolink:Gene", "biolink:Genotype", "biolink:LifeStage", "biolink:MolecularActivity", "biolink:MolecularEntity", "biolink:NamedThing", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:SequenceVariant"], "node_count": 1379605, "original_source": ["phenio", "alliance", "bgee", "biogrid", "clingen", "clinvar", "ctd", "dictybase", "go", "hp", "maxo", "panther", "pombase", "reactome", "string", "xenbase", "zfin"], "predicates": ["biolink:actively_involved_in", "biolink:acts_upstream_of", "biolink:acts_upstream_of_negative_effect", "biolink:acts_upstream_of_or_within", "biolink:acts_upstream_of_or_within_negative_effect", "biolink:acts_upstream_of_or_within_positive_effect", "biolink:acts_upstream_of_positive_effect", "biolink:ameliorates_condition", "biolink:associated_with_increased_likelihood_of", "biolink:caused_by", "biolink:causes", "biolink:colocalizes_with", "biolink:contraindicated_in", "biolink:contributes_to", "biolink:disease_has_location", "biolink:disrupts", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:genetically_associated_with", "biolink:has_disease", "biolink:has_gene", "biolink:has_mode_of_inheritance", "biolink:has_participant", "biolink:has_phenotype", "biolink:has_sequence_variant", "biolink:homologous_to", "biolink:interacts_with", "biolink:is_active_in", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:model_of", "biolink:orthologous_to", "biolink:part_of", "biolink:participates_in", "biolink:preventative_for_condition", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:treats_or_applied_or_studied_to_treat"], "product_file_size": 1438250397, "product_url": "https://data.monarchinitiative.org/monarch-kg/latest/monarch-kg.neo4j.dump", "secondary_source": ["kg-monarch"], "warnings": []}, {"category": "GraphProduct", "description": "DuckDB database of KG-Monarch", "edge_count": 15356321, "id": "kg-monarch.graph.duckdb", "name": "DuckDB database of KG-Monarch", "node_categories": ["biolink:AnatomicalEntity", "biolink:BiologicalProcess", "biolink:Case", "biolink:Cell", "biolink:CellularComponent", "biolink:ChemicalEntity", "biolink:Disease", "biolink:Gene", "biolink:Genotype", "biolink:LifeStage", "biolink:MolecularActivity", "biolink:MolecularEntity", "biolink:NamedThing", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:SequenceVariant"], "node_count": 1379605, "original_source": ["phenio", "alliance", "bgee", "biogrid", "clingen", "clinvar", "ctd", "dictybase", "go", "hp", "maxo", "panther", "pombase", "reactome", "string", "xenbase", "zfin"], "predicates": ["biolink:actively_involved_in", "biolink:acts_upstream_of", "biolink:acts_upstream_of_negative_effect", "biolink:acts_upstream_of_or_within", "biolink:acts_upstream_of_or_within_negative_effect", "biolink:acts_upstream_of_or_within_positive_effect", "biolink:acts_upstream_of_positive_effect", "biolink:ameliorates_condition", "biolink:associated_with_increased_likelihood_of", "biolink:caused_by", "biolink:causes", "biolink:colocalizes_with", "biolink:contraindicated_in", "biolink:contributes_to", "biolink:disease_has_location", "biolink:disrupts", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:genetically_associated_with", "biolink:has_disease", "biolink:has_gene", "biolink:has_mode_of_inheritance", "biolink:has_participant", "biolink:has_phenotype", "biolink:has_sequence_variant", "biolink:homologous_to", "biolink:interacts_with", "biolink:is_active_in", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:model_of", "biolink:orthologous_to", "biolink:part_of", "biolink:participates_in", "biolink:preventative_for_condition", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:treats_or_applied_or_studied_to_treat"], "product_file_size": 6827814912, "product_url": "https://data.monarchinitiative.org/monarch-kg/latest/monarch-kg.duckdb", "secondary_source": ["kg-monarch"]}, {"category": "GraphProduct", "description": "KGX JSON-Lines Distribution of KG-Monarch (Edges)", "edge_count": 15356321, "format": "kgx-jsonl", "id": "kg-monarch.graph.jsonl.edges", "name": "KGX JSON-L Distribution of KG-Monarch Edges", "node_categories": ["biolink:AnatomicalEntity", "biolink:BiologicalProcess", "biolink:Case", "biolink:Cell", "biolink:CellularComponent", "biolink:ChemicalEntity", "biolink:Disease", "biolink:Gene", "biolink:Genotype", "biolink:LifeStage", "biolink:MolecularActivity", "biolink:MolecularEntity", "biolink:NamedThing", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:SequenceVariant"], "node_count": 1379605, "original_source": ["phenio", "alliance", "bgee", "biogrid", "clingen", "clinvar", "ctd", "dictybase", "go", "hp", "maxo", "panther", "pombase", "reactome", "string", "xenbase", "zfin"], "predicates": ["biolink:actively_involved_in", "biolink:acts_upstream_of", "biolink:acts_upstream_of_negative_effect", "biolink:acts_upstream_of_or_within", "biolink:acts_upstream_of_or_within_negative_effect", "biolink:acts_upstream_of_or_within_positive_effect", "biolink:acts_upstream_of_positive_effect", "biolink:ameliorates_condition", "biolink:associated_with_increased_likelihood_of", "biolink:caused_by", "biolink:causes", "biolink:colocalizes_with", "biolink:contraindicated_in", "biolink:contributes_to", "biolink:disease_has_location", "biolink:disrupts", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:genetically_associated_with", "biolink:has_disease", "biolink:has_gene", "biolink:has_mode_of_inheritance", "biolink:has_participant", "biolink:has_phenotype", "biolink:has_sequence_variant", "biolink:homologous_to", "biolink:interacts_with", "biolink:is_active_in", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:model_of", "biolink:orthologous_to", "biolink:part_of", "biolink:participates_in", "biolink:preventative_for_condition", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:treats_or_applied_or_studied_to_treat"], "product_file_size": 15279494795, "product_url": "https://data.monarchinitiative.org/monarch-kg/latest/monarch-kg_edges.jsonl", "secondary_source": ["kg-monarch"]}, {"category": "GraphProduct", "description": "KGX JSON-Lines Distribution of KG-Monarch (Nodes)", "edge_count": 15356321, "format": "kgx-jsonl", "id": "kg-monarch.graph.jsonl.nodes", "name": "KGX JSON-L Distribution of KG-Monarch Nodes", "node_categories": ["biolink:AnatomicalEntity", "biolink:BiologicalProcess", "biolink:Case", "biolink:Cell", "biolink:CellularComponent", "biolink:ChemicalEntity", "biolink:Disease", "biolink:Gene", "biolink:Genotype", "biolink:LifeStage", "biolink:MolecularActivity", "biolink:MolecularEntity", "biolink:NamedThing", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:SequenceVariant"], "node_count": 1379605, "original_source": ["phenio", "alliance", "bgee", "biogrid", "clingen", "clinvar", "ctd", "dictybase", "go", "hp", "maxo", "panther", "pombase", "reactome", "string", "xenbase", "zfin"], "predicates": ["biolink:actively_involved_in", "biolink:acts_upstream_of", "biolink:acts_upstream_of_negative_effect", "biolink:acts_upstream_of_or_within", "biolink:acts_upstream_of_or_within_negative_effect", "biolink:acts_upstream_of_or_within_positive_effect", "biolink:acts_upstream_of_positive_effect", "biolink:ameliorates_condition", "biolink:associated_with_increased_likelihood_of", "biolink:caused_by", "biolink:causes", "biolink:colocalizes_with", "biolink:contraindicated_in", "biolink:contributes_to", "biolink:disease_has_location", "biolink:disrupts", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:genetically_associated_with", "biolink:has_disease", "biolink:has_gene", "biolink:has_mode_of_inheritance", "biolink:has_participant", "biolink:has_phenotype", "biolink:has_sequence_variant", "biolink:homologous_to", "biolink:interacts_with", "biolink:is_active_in", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:model_of", "biolink:orthologous_to", "biolink:part_of", "biolink:participates_in", "biolink:preventative_for_condition", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:treats_or_applied_or_studied_to_treat"], "product_file_size": 1149505896, "product_url": "https://data.monarchinitiative.org/monarch-kg/latest/monarch-kg_nodes.jsonl", "secondary_source": ["kg-monarch"]}, {"category": "GraphProduct", "description": "Neo4j Dump of KG-Monarch Edges", "edge_count": 15356321, "format": "neo4j", "id": "kg-monarch.graph.neo4j.edges", "name": "Neo4j Dump of KG-Monarch Edges", "node_categories": ["biolink:AnatomicalEntity", "biolink:BiologicalProcess", "biolink:Case", "biolink:Cell", "biolink:CellularComponent", "biolink:ChemicalEntity", "biolink:Disease", "biolink:Gene", "biolink:Genotype", "biolink:LifeStage", "biolink:MolecularActivity", "biolink:MolecularEntity", "biolink:NamedThing", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:SequenceVariant"], "node_count": 1379605, "original_source": ["phenio", "alliance", "bgee", "biogrid", "clingen", "clinvar", "ctd", "dictybase", "go", "hp", "maxo", "panther", "pombase", "reactome", "string", "xenbase", "zfin"], "predicates": ["biolink:actively_involved_in", "biolink:acts_upstream_of", "biolink:acts_upstream_of_negative_effect", "biolink:acts_upstream_of_or_within", "biolink:acts_upstream_of_or_within_negative_effect", "biolink:acts_upstream_of_or_within_positive_effect", "biolink:acts_upstream_of_positive_effect", "biolink:ameliorates_condition", "biolink:associated_with_increased_likelihood_of", "biolink:caused_by", "biolink:causes", "biolink:colocalizes_with", "biolink:contraindicated_in", "biolink:contributes_to", "biolink:disease_has_location", "biolink:disrupts", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:genetically_associated_with", "biolink:has_disease", "biolink:has_gene", "biolink:has_mode_of_inheritance", "biolink:has_participant", "biolink:has_phenotype", "biolink:has_sequence_variant", "biolink:homologous_to", "biolink:interacts_with", "biolink:is_active_in", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:model_of", "biolink:orthologous_to", "biolink:part_of", "biolink:participates_in", "biolink:preventative_for_condition", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:treats_or_applied_or_studied_to_treat"], "product_file_size": 4386388748, "product_url": "https://data.monarchinitiative.org/monarch-kg/latest/monarch-kg_edges.neo4j.csv", "secondary_source": ["kg-monarch"]}, {"category": "GraphProduct", "description": "Neo4j Dump of KG-Monarch Nodes", "edge_count": 15356321, "format": "neo4j", "id": "kg-monarch.graph.neo4j.nodes", "name": "Neo4j Dump of KG-Monarch Nodes", "node_categories": ["biolink:AnatomicalEntity", "biolink:BiologicalProcess", "biolink:Case", "biolink:Cell", "biolink:CellularComponent", "biolink:ChemicalEntity", "biolink:Disease", "biolink:Gene", "biolink:Genotype", "biolink:LifeStage", "biolink:MolecularActivity", "biolink:MolecularEntity", "biolink:NamedThing", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:SequenceVariant"], "node_count": 1379605, "original_source": ["phenio", "alliance", "bgee", "biogrid", "clingen", "clinvar", "ctd", "dictybase", "go", "hp", "maxo", "panther", "pombase", "reactome", "string", "xenbase", "zfin"], "predicates": ["biolink:actively_involved_in", "biolink:acts_upstream_of", "biolink:acts_upstream_of_negative_effect", "biolink:acts_upstream_of_or_within", "biolink:acts_upstream_of_or_within_negative_effect", "biolink:acts_upstream_of_or_within_positive_effect", "biolink:acts_upstream_of_positive_effect", "biolink:ameliorates_condition", "biolink:associated_with_increased_likelihood_of", "biolink:caused_by", "biolink:causes", "biolink:colocalizes_with", "biolink:contraindicated_in", "biolink:contributes_to", "biolink:disease_has_location", "biolink:disrupts", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:genetically_associated_with", "biolink:has_disease", "biolink:has_gene", "biolink:has_mode_of_inheritance", "biolink:has_participant", "biolink:has_phenotype", "biolink:has_sequence_variant", "biolink:homologous_to", "biolink:interacts_with", "biolink:is_active_in", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:model_of", "biolink:orthologous_to", "biolink:part_of", "biolink:participates_in", "biolink:preventative_for_condition", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:treats_or_applied_or_studied_to_treat"], "product_file_size": 349573789, "product_url": "https://data.monarchinitiative.org/monarch-kg/latest/monarch-kg_nodes.neo4j.csv", "secondary_source": ["kg-monarch"]}, {"category": "GraphProduct", "description": "KGX graph package for Alliance of Genome Resources (build alliance_8.2.0_1.0_2025sep1_4.3.6; release 2025_12_15)", "format": "kgx", "id": "translator.alliance.graph", "name": "Translator Alliance KGX Graph", "original_source": ["alliance"], "product_url": "https://stars.renci.org/var/translator/releases/alliance/2025_12_15/", "secondary_source": ["translator"]}]
{"activity_status": "active", "category": "Aggregator", "contacts": [{"category": "Organization", "contact_details": [{"contact_type": "url", "value": "https://www.alliancegenome.org/contact-us"}], "label": "Alliance of Genome Resources"}], "creation_date": "2025-08-13T00:00:00Z", "description": "The Alliance of Genome Resources (Alliance) is a collaborative platform integrating model organism knowledge (FlyBase, MGD, RGD, SGD, WormBase, Xenbase, ZFIN) and Gene Ontology Consortium annotations to provide harmonized comparative genomics, gene function, phenotype, disease association, expression, orthology, and variant data for cross-species research and translation.", "domains": ["genomics"], "homepage_url": "https://www.alliancegenome.org/", "id": "alliance", "last_modified_date": "2025-09-03T00:00:00Z", "layout": "resource_detail", "license": {"id": "https://www.alliancegenome.org/privacy-warranty-licensing", "label": "Alliance Data Licensing & Privacy"}, "name": "Alliance of Genome Resources", "products": [{"category": "GraphicalInterface", "description": "Primary web portal for integrated cross-species search and exploration of genes, phenotypes, disease models, expression, variants, and orthology summaries", "format": "http", "id": "alliance.portal", "name": "Alliance Web Portal", "original_source": ["alliance"], "product_url": "https://www.alliancegenome.org/"}, {"category": "ProgrammingInterface", "description": "REST/JSON API providing programmatic access to integrated gene, orthology, phenotype, disease, expression, and variant endpoints", "id": "alliance.api", "is_public": true, "name": "Alliance API", "original_source": ["alliance"], "product_url": "https://www.alliancegenome.org/swagger-ui"}, {"category": "ProgrammingInterface", "description": "OpenAPI specification (machine-readable) for the Alliance REST API", "format": "json", "id": "alliance.openapi", "name": "Alliance OpenAPI Spec", "original_source": ["alliance"], "product_url": "https://www.alliancegenome.org/openapi"}, {"category": "GraphicalInterface", "description": "AllianceMine instance (InterMine-based) enabling advanced query building over integrated genomic data", "id": "alliance.mine", "name": "AllianceMine", "original_source": ["alliance"], "product_url": "https://www.alliancegenome.org/bluegenes/alliancemine"}, {"category": "GraphicalInterface", "description": "JBrowse 2 genome browser instance for interactive visualization of genomes, annotations, and variants across species", "id": "alliance.jbrowse2", "name": "Alliance JBrowse 2", "original_source": ["alliance"], "product_url": "https://www.alliancegenome.org/jbrowse2/"}, {"category": "GraphicalInterface", "description": "Textpresso literature mining interface for full-text and ontology term powered searches across curated publications", "id": "alliance.textpresso", "name": "Alliance Textpresso", "original_source": ["alliance"], "product_url": "https://www.alliancegenome.org/textpresso"}, {"category": "Product", "description": "Root directory for release-specific bulk data dumps (JSON, TSV, GAF, and other formats) for genes, orthology, phenotypes, disease associations, alleles, and related integrated datasets; individual per-file products can be programmatically enumerated in future updates", "id": "alliance.downloads", "name": "Alliance Data Downloads (Root)", "original_source": ["alliance"], "product_url": "https://download.alliancegenome.org/", "warnings": ["File was not able to be retrieved when checked on 2026-01-30_ No Content-Length header found", "File was not able to be retrieved when checked on 2026-01-28_ No Content-Length header found", "File was not able to be retrieved when checked on 2026-02-04: No Content-Length header found"]}, {"category": "GraphProduct", "description": "KGX Distribution of KG-Monarch", "edge_count": 15356321, "format": "kgx", "id": "kg-monarch.graph", "name": "KGX Distribution of KG-Monarch", "node_categories": ["biolink:AnatomicalEntity", "biolink:BiologicalProcess", "biolink:Case", "biolink:Cell", "biolink:CellularComponent", "biolink:ChemicalEntity", "biolink:Disease", "biolink:Gene", "biolink:Genotype", "biolink:LifeStage", "biolink:MolecularActivity", "biolink:MolecularEntity", "biolink:NamedThing", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:SequenceVariant"], "node_count": 1379605, "original_source": ["phenio", "alliance", "bgee", "biogrid", "clingen", "clinvar", "ctd", "dictybase", "go", "hp", "maxo", "panther", "pombase", "reactome", "string", "xenbase", "zfin"], "predicates": ["biolink:actively_involved_in", "biolink:acts_upstream_of", "biolink:acts_upstream_of_negative_effect", "biolink:acts_upstream_of_or_within", "biolink:acts_upstream_of_or_within_negative_effect", "biolink:acts_upstream_of_or_within_positive_effect", "biolink:acts_upstream_of_positive_effect", "biolink:ameliorates_condition", "biolink:associated_with_increased_likelihood_of", "biolink:caused_by", "biolink:causes", "biolink:colocalizes_with", "biolink:contraindicated_in", "biolink:contributes_to", "biolink:disease_has_location", "biolink:disrupts", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:genetically_associated_with", "biolink:has_disease", "biolink:has_gene", "biolink:has_mode_of_inheritance", "biolink:has_participant", "biolink:has_phenotype", "biolink:has_sequence_variant", "biolink:homologous_to", "biolink:interacts_with", "biolink:is_active_in", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:model_of", "biolink:orthologous_to", "biolink:part_of", "biolink:participates_in", "biolink:preventative_for_condition", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:treats_or_applied_or_studied_to_treat"], "product_file_size": 230877741, "product_url": "http://data.monarchinitiative.org/monarch-kg/latest/monarch-kg.tar.gz", "secondary_source": ["kg-monarch"]}, {"category": "GraphProduct", "description": "KGX JSON-Lines Distribution of KG-Monarch", "edge_count": 15356321, "format": "kgx-jsonl", "id": "kg-monarch.graph.jsonl", "name": "KGX JSON-L Distribution of KG-Monarch", "node_categories": ["biolink:AnatomicalEntity", "biolink:BiologicalProcess", "biolink:Case", "biolink:Cell", "biolink:CellularComponent", "biolink:ChemicalEntity", "biolink:Disease", "biolink:Gene", "biolink:Genotype", "biolink:LifeStage", "biolink:MolecularActivity", "biolink:MolecularEntity", "biolink:NamedThing", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:SequenceVariant"], "node_count": 1379605, "original_source": ["phenio", "alliance", "bgee", "biogrid", "clingen", "clinvar", "ctd", "dictybase", "go", "hp", "maxo", "panther", "pombase", "reactome", "string", "xenbase", "zfin"], "predicates": ["biolink:actively_involved_in", "biolink:acts_upstream_of", "biolink:acts_upstream_of_negative_effect", "biolink:acts_upstream_of_or_within", "biolink:acts_upstream_of_or_within_negative_effect", "biolink:acts_upstream_of_or_within_positive_effect", "biolink:acts_upstream_of_positive_effect", "biolink:ameliorates_condition", "biolink:associated_with_increased_likelihood_of", "biolink:caused_by", "biolink:causes", "biolink:colocalizes_with", "biolink:contraindicated_in", "biolink:contributes_to", "biolink:disease_has_location", "biolink:disrupts", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:genetically_associated_with", "biolink:has_disease", "biolink:has_gene", "biolink:has_mode_of_inheritance", "biolink:has_participant", "biolink:has_phenotype", "biolink:has_sequence_variant", "biolink:homologous_to", "biolink:interacts_with", "biolink:is_active_in", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:model_of", "biolink:orthologous_to", "biolink:part_of", "biolink:participates_in", "biolink:preventative_for_condition", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:treats_or_applied_or_studied_to_treat"], "product_file_size": 315667976, "product_url": "https://data.monarchinitiative.org/monarch-kg/latest/monarch-kg.jsonl.tar.gz", "secondary_source": ["kg-monarch"]}, {"category": "GraphProduct", "description": "RDF Distribution of KG-Monarch", "edge_count": 15356321, "format": "rdfxml", "id": "kg-monarch.graph.rdf", "name": "RDF Distribution of KG-Monarch", "node_categories": ["biolink:AnatomicalEntity", "biolink:BiologicalProcess", "biolink:Case", "biolink:Cell", "biolink:CellularComponent", "biolink:ChemicalEntity", "biolink:Disease", "biolink:Gene", "biolink:Genotype", "biolink:LifeStage", "biolink:MolecularActivity", "biolink:MolecularEntity", "biolink:NamedThing", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:SequenceVariant"], "node_count": 1379605, "original_source": ["phenio", "alliance", "bgee", "biogrid", "clingen", "clinvar", "ctd", "dictybase", "go", "hp", "maxo", "panther", "pombase", "reactome", "string", "xenbase", "zfin"], "predicates": ["biolink:actively_involved_in", "biolink:acts_upstream_of", "biolink:acts_upstream_of_negative_effect", "biolink:acts_upstream_of_or_within", "biolink:acts_upstream_of_or_within_negative_effect", "biolink:acts_upstream_of_or_within_positive_effect", "biolink:acts_upstream_of_positive_effect", "biolink:ameliorates_condition", "biolink:associated_with_increased_likelihood_of", "biolink:caused_by", "biolink:causes", "biolink:colocalizes_with", "biolink:contraindicated_in", "biolink:contributes_to", "biolink:disease_has_location", "biolink:disrupts", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:genetically_associated_with", "biolink:has_disease", "biolink:has_gene", "biolink:has_mode_of_inheritance", "biolink:has_participant", "biolink:has_phenotype", "biolink:has_sequence_variant", "biolink:homologous_to", "biolink:interacts_with", "biolink:is_active_in", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:model_of", "biolink:orthologous_to", "biolink:part_of", "biolink:participates_in", "biolink:preventative_for_condition", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:treats_or_applied_or_studied_to_treat"], "product_file_size": 879238775, "product_url": "https://data.monarchinitiative.org/monarch-kg/latest/monarch-kg.nt.gz", "secondary_source": ["kg-monarch"]}, {"category": "GraphProduct", "description": "Neo4j Dump of KG-Monarch", "dump_format": "neo4j", "edge_count": 15356321, "id": "kg-monarch.graph.neo4j", "name": "Neo4j Dump of KG-Monarch", "node_categories": ["biolink:AnatomicalEntity", "biolink:BiologicalProcess", "biolink:Case", "biolink:Cell", "biolink:CellularComponent", "biolink:ChemicalEntity", "biolink:Disease", "biolink:Gene", "biolink:Genotype", "biolink:LifeStage", "biolink:MolecularActivity", "biolink:MolecularEntity", "biolink:NamedThing", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:SequenceVariant"], "node_count": 1379605, "original_source": ["phenio", "alliance", "bgee", "biogrid", "clingen", "clinvar", "ctd", "dictybase", "go", "hp", "maxo", "panther", "pombase", "reactome", "string", "xenbase", "zfin"], "predicates": ["biolink:actively_involved_in", "biolink:acts_upstream_of", "biolink:acts_upstream_of_negative_effect", "biolink:acts_upstream_of_or_within", "biolink:acts_upstream_of_or_within_negative_effect", "biolink:acts_upstream_of_or_within_positive_effect", "biolink:acts_upstream_of_positive_effect", "biolink:ameliorates_condition", "biolink:associated_with_increased_likelihood_of", "biolink:caused_by", "biolink:causes", "biolink:colocalizes_with", "biolink:contraindicated_in", "biolink:contributes_to", "biolink:disease_has_location", "biolink:disrupts", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:genetically_associated_with", "biolink:has_disease", "biolink:has_gene", "biolink:has_mode_of_inheritance", "biolink:has_participant", "biolink:has_phenotype", "biolink:has_sequence_variant", "biolink:homologous_to", "biolink:interacts_with", "biolink:is_active_in", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:model_of", "biolink:orthologous_to", "biolink:part_of", "biolink:participates_in", "biolink:preventative_for_condition", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:treats_or_applied_or_studied_to_treat"], "product_file_size": 1438250397, "product_url": "https://data.monarchinitiative.org/monarch-kg/latest/monarch-kg.neo4j.dump", "secondary_source": ["kg-monarch"], "warnings": []}, {"category": "GraphProduct", "description": "DuckDB database of KG-Monarch", "edge_count": 15356321, "id": "kg-monarch.graph.duckdb", "name": "DuckDB database of KG-Monarch", "node_categories": ["biolink:AnatomicalEntity", "biolink:BiologicalProcess", "biolink:Case", "biolink:Cell", "biolink:CellularComponent", "biolink:ChemicalEntity", "biolink:Disease", "biolink:Gene", "biolink:Genotype", "biolink:LifeStage", "biolink:MolecularActivity", "biolink:MolecularEntity", "biolink:NamedThing", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:SequenceVariant"], "node_count": 1379605, "original_source": ["phenio", "alliance", "bgee", "biogrid", "clingen", "clinvar", "ctd", "dictybase", "go", "hp", "maxo", "panther", "pombase", "reactome", "string", "xenbase", "zfin"], "predicates": ["biolink:actively_involved_in", "biolink:acts_upstream_of", "biolink:acts_upstream_of_negative_effect", "biolink:acts_upstream_of_or_within", "biolink:acts_upstream_of_or_within_negative_effect", "biolink:acts_upstream_of_or_within_positive_effect", "biolink:acts_upstream_of_positive_effect", "biolink:ameliorates_condition", "biolink:associated_with_increased_likelihood_of", "biolink:caused_by", "biolink:causes", "biolink:colocalizes_with", "biolink:contraindicated_in", "biolink:contributes_to", "biolink:disease_has_location", "biolink:disrupts", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:genetically_associated_with", "biolink:has_disease", "biolink:has_gene", "biolink:has_mode_of_inheritance", "biolink:has_participant", "biolink:has_phenotype", "biolink:has_sequence_variant", "biolink:homologous_to", "biolink:interacts_with", "biolink:is_active_in", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:model_of", "biolink:orthologous_to", "biolink:part_of", "biolink:participates_in", "biolink:preventative_for_condition", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:treats_or_applied_or_studied_to_treat"], "product_file_size": 6827814912, "product_url": "https://data.monarchinitiative.org/monarch-kg/latest/monarch-kg.duckdb", "secondary_source": ["kg-monarch"]}, {"category": "GraphProduct", "description": "KGX JSON-Lines Distribution of KG-Monarch (Edges)", "edge_count": 15356321, "format": "kgx-jsonl", "id": "kg-monarch.graph.jsonl.edges", "name": "KGX JSON-L Distribution of KG-Monarch Edges", "node_categories": ["biolink:AnatomicalEntity", "biolink:BiologicalProcess", "biolink:Case", "biolink:Cell", "biolink:CellularComponent", "biolink:ChemicalEntity", "biolink:Disease", "biolink:Gene", "biolink:Genotype", "biolink:LifeStage", "biolink:MolecularActivity", "biolink:MolecularEntity", "biolink:NamedThing", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:SequenceVariant"], "node_count": 1379605, "original_source": ["phenio", "alliance", "bgee", "biogrid", "clingen", "clinvar", "ctd", "dictybase", "go", "hp", "maxo", "panther", "pombase", "reactome", "string", "xenbase", "zfin"], "predicates": ["biolink:actively_involved_in", "biolink:acts_upstream_of", "biolink:acts_upstream_of_negative_effect", "biolink:acts_upstream_of_or_within", "biolink:acts_upstream_of_or_within_negative_effect", "biolink:acts_upstream_of_or_within_positive_effect", "biolink:acts_upstream_of_positive_effect", "biolink:ameliorates_condition", "biolink:associated_with_increased_likelihood_of", "biolink:caused_by", "biolink:causes", "biolink:colocalizes_with", "biolink:contraindicated_in", "biolink:contributes_to", "biolink:disease_has_location", "biolink:disrupts", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:genetically_associated_with", "biolink:has_disease", "biolink:has_gene", "biolink:has_mode_of_inheritance", "biolink:has_participant", "biolink:has_phenotype", "biolink:has_sequence_variant", "biolink:homologous_to", "biolink:interacts_with", "biolink:is_active_in", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:model_of", "biolink:orthologous_to", "biolink:part_of", "biolink:participates_in", "biolink:preventative_for_condition", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:treats_or_applied_or_studied_to_treat"], "product_file_size": 15279494795, "product_url": "https://data.monarchinitiative.org/monarch-kg/latest/monarch-kg_edges.jsonl", "secondary_source": ["kg-monarch"]}, {"category": "GraphProduct", "description": "KGX JSON-Lines Distribution of KG-Monarch (Nodes)", "edge_count": 15356321, "format": "kgx-jsonl", "id": "kg-monarch.graph.jsonl.nodes", "name": "KGX JSON-L Distribution of KG-Monarch Nodes", "node_categories": ["biolink:AnatomicalEntity", "biolink:BiologicalProcess", "biolink:Case", "biolink:Cell", "biolink:CellularComponent", "biolink:ChemicalEntity", "biolink:Disease", "biolink:Gene", "biolink:Genotype", "biolink:LifeStage", "biolink:MolecularActivity", "biolink:MolecularEntity", "biolink:NamedThing", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:SequenceVariant"], "node_count": 1379605, "original_source": ["phenio", "alliance", "bgee", "biogrid", "clingen", "clinvar", "ctd", "dictybase", "go", "hp", "maxo", "panther", "pombase", "reactome", "string", "xenbase", "zfin"], "predicates": ["biolink:actively_involved_in", "biolink:acts_upstream_of", "biolink:acts_upstream_of_negative_effect", "biolink:acts_upstream_of_or_within", "biolink:acts_upstream_of_or_within_negative_effect", "biolink:acts_upstream_of_or_within_positive_effect", "biolink:acts_upstream_of_positive_effect", "biolink:ameliorates_condition", "biolink:associated_with_increased_likelihood_of", "biolink:caused_by", "biolink:causes", "biolink:colocalizes_with", "biolink:contraindicated_in", "biolink:contributes_to", "biolink:disease_has_location", "biolink:disrupts", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:genetically_associated_with", "biolink:has_disease", "biolink:has_gene", "biolink:has_mode_of_inheritance", "biolink:has_participant", "biolink:has_phenotype", "biolink:has_sequence_variant", "biolink:homologous_to", "biolink:interacts_with", "biolink:is_active_in", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:model_of", "biolink:orthologous_to", "biolink:part_of", "biolink:participates_in", "biolink:preventative_for_condition", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:treats_or_applied_or_studied_to_treat"], "product_file_size": 1149505896, "product_url": "https://data.monarchinitiative.org/monarch-kg/latest/monarch-kg_nodes.jsonl", "secondary_source": ["kg-monarch"]}, {"category": "GraphProduct", "description": "Neo4j Dump of KG-Monarch Edges", "edge_count": 15356321, "format": "neo4j", "id": "kg-monarch.graph.neo4j.edges", "name": "Neo4j Dump of KG-Monarch Edges", "node_categories": ["biolink:AnatomicalEntity", "biolink:BiologicalProcess", "biolink:Case", "biolink:Cell", "biolink:CellularComponent", "biolink:ChemicalEntity", "biolink:Disease", "biolink:Gene", "biolink:Genotype", "biolink:LifeStage", "biolink:MolecularActivity", "biolink:MolecularEntity", "biolink:NamedThing", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:SequenceVariant"], "node_count": 1379605, "original_source": ["phenio", "alliance", "bgee", "biogrid", "clingen", "clinvar", "ctd", "dictybase", "go", "hp", "maxo", "panther", "pombase", "reactome", "string", "xenbase", "zfin"], "predicates": ["biolink:actively_involved_in", "biolink:acts_upstream_of", "biolink:acts_upstream_of_negative_effect", "biolink:acts_upstream_of_or_within", "biolink:acts_upstream_of_or_within_negative_effect", "biolink:acts_upstream_of_or_within_positive_effect", "biolink:acts_upstream_of_positive_effect", "biolink:ameliorates_condition", "biolink:associated_with_increased_likelihood_of", "biolink:caused_by", "biolink:causes", "biolink:colocalizes_with", "biolink:contraindicated_in", "biolink:contributes_to", "biolink:disease_has_location", "biolink:disrupts", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:genetically_associated_with", "biolink:has_disease", "biolink:has_gene", "biolink:has_mode_of_inheritance", "biolink:has_participant", "biolink:has_phenotype", "biolink:has_sequence_variant", "biolink:homologous_to", "biolink:interacts_with", "biolink:is_active_in", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:model_of", "biolink:orthologous_to", "biolink:part_of", "biolink:participates_in", "biolink:preventative_for_condition", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:treats_or_applied_or_studied_to_treat"], "product_file_size": 4386388748, "product_url": "https://data.monarchinitiative.org/monarch-kg/latest/monarch-kg_edges.neo4j.csv", "secondary_source": ["kg-monarch"]}, {"category": "GraphProduct", "description": "Neo4j Dump of KG-Monarch Nodes", "edge_count": 15356321, "format": "neo4j", "id": "kg-monarch.graph.neo4j.nodes", "name": "Neo4j Dump of KG-Monarch Nodes", "node_categories": ["biolink:AnatomicalEntity", "biolink:BiologicalProcess", "biolink:Case", "biolink:Cell", "biolink:CellularComponent", "biolink:ChemicalEntity", "biolink:Disease", "biolink:Gene", "biolink:Genotype", "biolink:LifeStage", "biolink:MolecularActivity", "biolink:MolecularEntity", "biolink:NamedThing", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:SequenceVariant"], "node_count": 1379605, "original_source": ["phenio", "alliance", "bgee", "biogrid", "clingen", "clinvar", "ctd", "dictybase", "go", "hp", "maxo", "panther", "pombase", "reactome", "string", "xenbase", "zfin"], "predicates": ["biolink:actively_involved_in", "biolink:acts_upstream_of", "biolink:acts_upstream_of_negative_effect", "biolink:acts_upstream_of_or_within", "biolink:acts_upstream_of_or_within_negative_effect", "biolink:acts_upstream_of_or_within_positive_effect", "biolink:acts_upstream_of_positive_effect", "biolink:ameliorates_condition", "biolink:associated_with_increased_likelihood_of", "biolink:caused_by", "biolink:causes", "biolink:colocalizes_with", "biolink:contraindicated_in", "biolink:contributes_to", "biolink:disease_has_location", "biolink:disrupts", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:genetically_associated_with", "biolink:has_disease", "biolink:has_gene", "biolink:has_mode_of_inheritance", "biolink:has_participant", "biolink:has_phenotype", "biolink:has_sequence_variant", "biolink:homologous_to", "biolink:interacts_with", "biolink:is_active_in", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:model_of", "biolink:orthologous_to", "biolink:part_of", "biolink:participates_in", "biolink:preventative_for_condition", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:treats_or_applied_or_studied_to_treat"], "product_file_size": 349573789, "product_url": "https://data.monarchinitiative.org/monarch-kg/latest/monarch-kg_nodes.neo4j.csv", "secondary_source": ["kg-monarch"]}, {"category": "GraphProduct", "description": "KGX graph package for Alliance of Genome Resources (build alliance_8.2.0_1.0_2025sep1_4.3.6; release 2025_12_15)", "format": "kgx", "id": "translator.alliance.graph", "name": "Translator Alliance KGX Graph", "original_source": ["alliance"], "product_url": "https://stars.renci.org/var/translator/releases/alliance/2025_12_15/", "secondary_source": ["translator"]}], "taxon": ["NCBITaxon:6239", "NCBITaxon:7227"]}