CORUM
CORUM (Comprehensive Resource of Mammalian Protein Complexes) is a curated database of experimentally characterized protein complexes from mammalian organisms, particularly human, mouse, and rat, with a focus on manually annotated information from scientific literature.
[{"category": "Organization", "contact_details": [{"contact_type": "url", "value": "https://www.helmholtz-munich.de/"}, {"contact_type": "email", "value": "corum@helmholtz-muenchen.de"}], "label": "Helmholtz Zentrum M\u00fcnchen"}]
[{"category": "Product", "description": "Complete dataset of all curated protein complexes in CORUM in tab-delimited format", "format": "tsv", "id": "corum.all_complexes", "license": {"id": "https://creativecommons.org/licenses/by-nc/4.0/", "label": "CC BY-NC 4.0"}, "name": "CORUM All Complexes", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "corum"}], "product_url": "https://mips.helmholtz-muenchen.de/corum/download/", "warnings": ["File was not able to be retrieved when checked on 2026-03-30_ Error connecting to URL_ HTTPSConnectionPool(host='mips.helmholtz-muenchen.de', port=443)_ Max retries exceeded with url_ /corum/download/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1028)')))", "File was not able to be retrieved when checked on 2026-03-30_ Error connecting to URL_ HTTPSConnectionPool(host='mips.helmholtz-muenchen.de', port=443)_ Max retries exceeded with url_ /corum/download/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-02-04_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2026-01-15_ Error connecting to URL_ HTTPSConnectionPool(host='mips.helmholtz-muenchen.de', port=443)_ Max retries exceeded with url_ /corum/download/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1017)')))"]}, {"category": "Product", "description": "Core dataset of manually curated, non-redundant protein complexes in CORUM in tab-delimited format", "format": "tsv", "id": "corum.core_complexes", "license": {"id": "https://creativecommons.org/licenses/by-nc/4.0/", "label": "CC BY-NC 4.0"}, "name": "CORUM Core Complexes", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "corum"}], "product_url": "https://mips.helmholtz-muenchen.de/corum/download/", "warnings": ["File was not able to be retrieved when checked on 2026-03-30_ Error connecting to URL_ HTTPSConnectionPool(host='mips.helmholtz-muenchen.de', port=443)_ Max retries exceeded with url_ /corum/download/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1028)')))", "File was not able to be retrieved when checked on 2026-03-30_ Error connecting to URL_ HTTPSConnectionPool(host='mips.helmholtz-muenchen.de', port=443)_ Max retries exceeded with url_ /corum/download/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-02-04_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2026-01-15_ Error connecting to URL_ HTTPSConnectionPool(host='mips.helmholtz-muenchen.de', port=443)_ Max retries exceeded with url_ /corum/download/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1017)')))"]}, {"category": "Product", "description": "Dataset of all CORUM protein complexes in PSI-MI XML format (Proteomics Standards Initiative)", "format": "psi_mi_xml", "id": "corum.psi_mi", "license": {"id": "https://creativecommons.org/licenses/by-nc/4.0/", "label": "CC BY-NC 4.0"}, "name": "CORUM PSI-MI", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "corum"}], "product_url": "https://mips.helmholtz-muenchen.de/corum/download/", "warnings": ["File was not able to be retrieved when checked on 2026-03-30_ Error connecting to URL_ HTTPSConnectionPool(host='mips.helmholtz-muenchen.de', port=443)_ Max retries exceeded with url_ /corum/download/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1028)')))", "File was not able to be retrieved when checked on 2026-03-30_ Error connecting to URL_ HTTPSConnectionPool(host='mips.helmholtz-muenchen.de', port=443)_ Max retries exceeded with url_ /corum/download/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-02-04_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2026-01-15_ Error connecting to URL_ HTTPSConnectionPool(host='mips.helmholtz-muenchen.de', port=443)_ Max retries exceeded with url_ /corum/download/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1017)')))"]}, {"category": "Product", "description": "Dataset of all CORUM protein complexes in PSI-MI MITAB 2.5 format", "format": "psi_mi_mitab", "id": "corum.mitab", "license": {"id": "https://creativecommons.org/licenses/by-nc/4.0/", "label": "CC BY-NC 4.0"}, "name": "CORUM MITAB", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "corum"}], "product_url": "https://mips.helmholtz-muenchen.de/corum/download/", "warnings": ["File was not able to be retrieved when checked on 2026-03-30_ Error connecting to URL_ HTTPSConnectionPool(host='mips.helmholtz-muenchen.de', port=443)_ Max retries exceeded with url_ /corum/download/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1028)')))", "File was not able to be retrieved when checked on 2026-03-30_ Error connecting to URL_ HTTPSConnectionPool(host='mips.helmholtz-muenchen.de', port=443)_ Max retries exceeded with url_ /corum/download/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-02-04_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2026-01-15_ Error connecting to URL_ HTTPSConnectionPool(host='mips.helmholtz-muenchen.de', port=443)_ Max retries exceeded with url_ /corum/download/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1017)')))"]}, {"category": "Product", "description": "Network embeddings of the Bioteque graph that represent biological entities and their associations", "format": "mixed", "id": "bioteque.embeddings", "name": "Bioteque Embeddings", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "achilles"}, {"relation_type": "prov:hadPrimarySource", "source": "bioteque"}, {"relation_type": "prov:hadPrimarySource", "source": "bto"}, {"relation_type": "prov:hadPrimarySource", "source": "ccle"}, {"relation_type": "prov:hadPrimarySource", "source": "cellosaurus"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "chemicalchecker"}, {"relation_type": "prov:hadPrimarySource", "source": "clue"}, {"relation_type": "prov:hadPrimarySource", "source": "compartments"}, {"relation_type": "prov:hadPrimarySource", "source": "corum"}, {"relation_type": "prov:hadPrimarySource", "source": "cosmic"}, {"relation_type": "prov:hadPrimarySource", "source": "creeds"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "depmap"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "dorothea"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "drugcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "gdsc"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gtex"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "huri"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "lincs"}, {"relation_type": "prov:hadPrimarySource", "source": "offsides"}, {"relation_type": "prov:hadPrimarySource", "source": "omnipath"}, {"relation_type": "prov:hadPrimarySource", "source": "opentargets"}, {"relation_type": "prov:hadPrimarySource", "source": "pharmacodb"}, {"relation_type": "prov:hadPrimarySource", "source": "prism"}, {"relation_type": "prov:hadPrimarySource", "source": "progeny"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "repodb"}, {"relation_type": "prov:hadPrimarySource", "source": "repohub"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}], "product_url": "https://bioteque.irbbarcelona.org/downloads/embeddings"}, {"category": "GraphProduct", "description": "Neo4j database dump of the Clinical Knowledge Graph and additional relationships", "dump_format": "neo4j", "edge_count": 220000000, "format": "mixed", "id": "clinicalkg.graph", "name": "CKG Graph Dump", "node_count": 16000000, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bto"}, {"relation_type": "prov:hadPrimarySource", "source": "cancer-genome-interpreter"}, {"relation_type": "prov:hadPrimarySource", "source": "clinicalkg"}, {"relation_type": "prov:hadPrimarySource", "source": "corum"}, {"relation_type": "prov:hadPrimarySource", "source": "dgidb"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "foodb"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "mi"}, {"relation_type": "prov:hadPrimarySource", "source": "mod"}, {"relation_type": "prov:hadPrimarySource", "source": "ms"}, {"relation_type": "prov:hadPrimarySource", "source": "mutationds"}, {"relation_type": "prov:hadPrimarySource", "source": "oncokb"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "phosphositeplus"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "signor"}, {"relation_type": "prov:hadPrimarySource", "source": "smpdb"}, {"relation_type": "prov:hadPrimarySource", "source": "snomedct"}, {"relation_type": "prov:hadPrimarySource", "source": "stitch"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "uo"}], "product_url": "https://data.mendeley.com/datasets/mrcf7f4tc2/1"}, {"category": "GraphProduct", "description": "Neo4j database dump of the Clinical Knowledge Graph and additional relationships", "dump_format": "neo4j", "edge_count": 220000000, "format": "mixed", "id": "cancer-genome-interpreter.clinicalkg.graph", "name": "CKG Graph Dump", "node_count": 16000000, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "stitch"}, {"relation_type": "prov:hadPrimarySource", "source": "smpdb"}, {"relation_type": "prov:hadPrimarySource", "source": "signor"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "phosphositeplus"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "oncokb"}, {"relation_type": "prov:hadPrimarySource", "source": "mutationds"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "foodb"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "dgidb"}, {"relation_type": "prov:hadPrimarySource", "source": "corum"}, {"relation_type": "prov:hadPrimarySource", "source": "cancer-genome-interpreter"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "bto"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "snomedct"}, {"relation_type": "prov:hadPrimarySource", "source": "mod"}, {"relation_type": "prov:hadPrimarySource", "source": "mi"}, {"relation_type": "prov:hadPrimarySource", "source": "ms"}, {"relation_type": "prov:hadPrimarySource", "source": "uo"}], "product_url": "https://data.mendeley.com/datasets/mrcf7f4tc2/1"}, {"category": "GraphProduct", "description": "Graph database dump and additional relationship files for the Clinical Knowledge Graph.", "format": "neo4j", "id": "ckg.graph", "latest_version": "1", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC BY 4.0"}, "name": "CKG Graph Database Dump", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bto"}, {"relation_type": "prov:hadPrimarySource", "source": "cancer-genome-interpreter"}, {"relation_type": "prov:hadPrimarySource", "source": "ckg"}, {"relation_type": "prov:hadPrimarySource", "source": "corum"}, {"relation_type": "prov:hadPrimarySource", "source": "dgidb"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "foodb"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "mi"}, {"relation_type": "prov:hadPrimarySource", "source": "mod"}, {"relation_type": "prov:hadPrimarySource", "source": "ms"}, {"relation_type": "prov:hadPrimarySource", "source": "mutationds"}, {"relation_type": "prov:hadPrimarySource", "source": "oncokb"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "phosphositeplus"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "signor"}, {"relation_type": "prov:hadPrimarySource", "source": "smpdb"}, {"relation_type": "prov:hadPrimarySource", "source": "snomedct"}, {"relation_type": "prov:hadPrimarySource", "source": "stitch"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "uo"}], "product_url": "https://data.mendeley.com/datasets/mrcf7f4tc2/1"}, {"category": "Product", "compression": "gzip", "description": "PC v14 integrated BioPAX Level 3 unified model containing normalized pathway data, molecular interactions, cross-database entity mappings, and metadata-derived content from 26 datasource rows.", "format": "biopax", "id": "pathwaycommons.biopax", "name": "Integrated BioPAX Model", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_file_size": 1700903742, "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/pc-biopax.owl.gz", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}, {"category": "Product", "description": "Harmonizome 3.0 processed dataset downloads, including dataset-specific association files and knowledge graph serialization downloads.", "format": "mixed", "id": "harmonizome.downloads", "name": "Harmonizome Downloads", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "harmonizome"}], "product_url": "https://maayanlab.cloud/Harmonizome/download", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "achilles"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogps"}, {"relation_type": "prov:wasDerivedFrom", "source": "ccle"}, {"relation_type": "prov:wasDerivedFrom", "source": "cellmarker"}, {"relation_type": "prov:wasDerivedFrom", "source": "chea"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "cmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "compartments"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "cosmic"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "depmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "encode"}, {"relation_type": "prov:wasDerivedFrom", "source": "gdsc"}, {"relation_type": "prov:wasDerivedFrom", "source": "geo"}, {"relation_type": "prov:wasDerivedFrom", "source": "glygen"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gtex"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "hpa"}, {"relation_type": "prov:wasDerivedFrom", "source": "hubmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "impc"}, {"relation_type": "prov:wasDerivedFrom", "source": "interpro"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "lincs-l1000"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "motrpac"}, {"relation_type": "prov:wasDerivedFrom", "source": "mp"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pfocr"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "tcga"}, {"relation_type": "prov:wasDerivedFrom", "source": "tissues"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "description": "Neo4j knowledge graph serialization of Harmonizome processed datasets, including genes, attributes, resources, datasets, and gene-attribute associations.", "dump_format": "neo4j", "format": "neo4j", "id": "harmonizome.kg-neo4j", "latest_version": "3.0", "name": "Harmonizome Knowledge Graph Neo4j Database", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "harmonizome"}], "product_url": "https://harmonizome-kg.maayanlab.cloud/", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "achilles"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogps"}, {"relation_type": "prov:wasDerivedFrom", "source": "ccle"}, {"relation_type": "prov:wasDerivedFrom", "source": "cellmarker"}, {"relation_type": "prov:wasDerivedFrom", "source": "chea"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "cmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "compartments"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "cosmic"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "depmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "encode"}, {"relation_type": "prov:wasDerivedFrom", "source": "gdsc"}, {"relation_type": "prov:wasDerivedFrom", "source": "geo"}, {"relation_type": "prov:wasDerivedFrom", "source": "glygen"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gtex"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "hpa"}, {"relation_type": "prov:wasDerivedFrom", "source": "hubmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "impc"}, {"relation_type": "prov:wasDerivedFrom", "source": "interpro"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "lincs-l1000"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "motrpac"}, {"relation_type": "prov:wasDerivedFrom", "source": "mp"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pfocr"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "tcga"}, {"relation_type": "prov:wasDerivedFrom", "source": "tissues"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "Product", "description": "Download directory for Pathway Commons PC v14 integrated pathway and molecular interaction datasets, including BioPAX, SIF, GMT, TXT, and JSON-LD products.", "format": "mixed", "id": "pathwaycommons.downloads", "name": "Pathway Commons Data Downloads", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}, {"category": "Product", "compression": "gzip", "description": "PC v14 Simple Interaction Format network file representing binary pairwise molecular relationships integrated from Pathway Commons upstream datasource rows.", "format": "sif", "id": "pathwaycommons.sif", "name": "SIF Network Format", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_file_size": 9810179, "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/pc-hgnc.sif.gz", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}, {"category": "Product", "compression": "gzip", "description": "PC v14 Gene Matrix Transposed gene sets for pathway enrichment analysis, derived from the integrated Pathway Commons pathway archive.", "format": "tsv", "id": "pathwaycommons.gmt", "name": "GMT Gene Set Format", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_file_size": 262513, "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/pc-hgnc.gmt.gz", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}, {"category": "Product", "compression": "gzip", "description": "PC v14 tab-delimited extended SIF node and edge file using HGNC-oriented identifiers for integrated Pathway Commons interactions.", "format": "txt", "id": "pathwaycommons.txt", "name": "Extended SIF TXT Format", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_file_size": 115608500, "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/pc-hgnc.txt.gz", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}, {"category": "ProgrammingInterface", "description": "REST API for searching identifiers and special keywords, mapping between data sources with a chain-query syntax, and retrieving entries across the integrated BioBTree databases.", "format": "http", "id": "biobtree.api", "is_public": true, "name": "BioBTree REST API", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "biobtree"}, {"relation_type": "prov:hadPrimarySource", "source": "alphafold"}, {"relation_type": "prov:hadPrimarySource", "source": "alphamissense"}, {"relation_type": "prov:hadPrimarySource", "source": "bao"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "bindingdb"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "brenda"}, {"relation_type": "prov:hadPrimarySource", "source": "cellphonedb"}, {"relation_type": "prov:hadPrimarySource", "source": "cellxgene"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "clinicaltrialsgov"}, {"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "collectri"}, {"relation_type": "prov:hadPrimarySource", "source": "corum"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "dbsnp"}, {"relation_type": "prov:hadPrimarySource", "source": "eco"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "encode"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "expressionatlas"}, {"relation_type": "prov:hadPrimarySource", "source": "fantom5"}, {"relation_type": "prov:hadPrimarySource", "source": "gencc"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "jaspar"}, {"relation_type": "prov:hadPrimarySource", "source": "lipidmaps"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "mirdb"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "msigdb"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "orphanet"}, {"relation_type": "prov:hadPrimarySource", "source": "pdb"}, {"relation_type": "prov:hadPrimarySource", "source": "pharmgkb"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "rhea"}, {"relation_type": "prov:hadPrimarySource", "source": "rnacentral"}, {"relation_type": "prov:hadPrimarySource", "source": "signor"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "surechembl"}, {"relation_type": "prov:hadPrimarySource", "source": "swisslipid"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}], "product_url": "https://sugi.bio/biobtree/api/"}, {"category": "GraphProduct", "compatibility": [{"standard": "biolink", "version": "4.2.1"}], "compression": "gzip", "description": "Human-scoped, Neo4j-ready subgraph of the BioBTree knowledge graph, exported as a biolink-typed KGX graph (~40M nodes / ~132M edges, ~8.3 GB compressed across separate node and edge files). A practical projection of the full graph for human-centric biomedical use. Published on Zenodo.", "edge_count": 132075627, "format": "kgx", "id": "biobtree.graph.human-subgraph", "license": {"id": "https://creativecommons.org/licenses/by-nc-sa/4.0/", "label": "CC-BY-NC-SA-4.0"}, "name": "BioBTree Knowledge Graph - Human Subgraph (KGX)", "node_categories": ["biolink:BiologicalProcess", "biolink:Cell", "biolink:CellLine", "biolink:CellularComponent", "biolink:CodingSequence", "biolink:Disease", "biolink:DiseaseOrPhenotypicFeature", "biolink:Drug", "biolink:Exon", "biolink:Gene", "biolink:GrossAnatomicalStructure", "biolink:MacromolecularComplex", "biolink:MolecularActivity", "biolink:NoncodingRNAProduct", "biolink:NucleicAcidSequenceMotif", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:ProteinDomain", "biolink:ProteinFamily", "biolink:Publication", "biolink:RegulatoryRegion", "biolink:SequenceVariant", "biolink:SmallMolecule", "biolink:Transcript"], "node_count": 40160474, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "biobtree"}, {"relation_type": "prov:hadPrimarySource", "source": "alphafold"}, {"relation_type": "prov:hadPrimarySource", "source": "alphamissense"}, {"relation_type": "prov:hadPrimarySource", "source": "bao"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "bindingdb"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "brenda"}, {"relation_type": "prov:hadPrimarySource", "source": "cellphonedb"}, {"relation_type": "prov:hadPrimarySource", "source": "cellxgene"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "clinicaltrialsgov"}, {"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "collectri"}, {"relation_type": "prov:hadPrimarySource", "source": "corum"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "dbsnp"}, {"relation_type": "prov:hadPrimarySource", "source": "eco"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "encode"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "expressionatlas"}, {"relation_type": "prov:hadPrimarySource", "source": "fantom5"}, {"relation_type": "prov:hadPrimarySource", "source": "gencc"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "jaspar"}, {"relation_type": "prov:hadPrimarySource", "source": "lipidmaps"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "mirdb"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "msigdb"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "orphanet"}, {"relation_type": "prov:hadPrimarySource", "source": "pdb"}, {"relation_type": "prov:hadPrimarySource", "source": "pharmgkb"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "rhea"}, {"relation_type": "prov:hadPrimarySource", "source": "rnacentral"}, {"relation_type": "prov:hadPrimarySource", "source": "signor"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "surechembl"}, {"relation_type": "prov:hadPrimarySource", "source": "swisslipid"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}], "predicates": ["biolink:actively_involved_in", "biolink:affects", "biolink:associated_with", "biolink:close_match", "biolink:derives_from", "biolink:directly_physically_interacts_with", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:gene_product_of", "biolink:has_adverse_event", "biolink:has_gene_product", "biolink:has_part", "biolink:has_participant", "biolink:has_phenotype", "biolink:in_clinical_trials_for", "biolink:in_taxon", "biolink:interacts_with", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:member_of", "biolink:mentions", "biolink:orthologous_to", "biolink:paralogous_to", "biolink:participates_in", "biolink:physically_interacts_with", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:transcribed_from", "biolink:translates_to", "biolink:treats_or_applied_or_studied_to_treat"], "product_url": "https://zenodo.org/records/20816742"}]
{"activity_status": "active", "category": "DataSource", "contacts": [{"category": "Organization", "contact_details": [{"contact_type": "url", "value": "https://www.helmholtz-munich.de/"}, {"contact_type": "email", "value": "corum@helmholtz-muenchen.de"}], "label": "Helmholtz Zentrum M\u00fcnchen"}], "creation_date": "2025-07-22T00:00:00Z", "description": "CORUM (Comprehensive Resource of Mammalian Protein Complexes) is a curated database of experimentally characterized protein complexes from mammalian organisms, particularly human, mouse, and rat, with a focus on manually annotated information from scientific literature.", "domains": ["proteomics", "biomedical", "chemistry and biochemistry"], "homepage_url": "https://mips.helmholtz-muenchen.de/corum/", "id": "corum", "last_modified_date": "2026-06-12T00:00:00Z", "layout": "resource_detail", "license": {"id": "https://creativecommons.org/licenses/by-nc/4.0/", "label": "CC BY-NC 4.0"}, "name": "CORUM", "products": [{"category": "Product", "description": "Complete dataset of all curated protein complexes in CORUM in tab-delimited format", "format": "tsv", "id": "corum.all_complexes", "license": {"id": "https://creativecommons.org/licenses/by-nc/4.0/", "label": "CC BY-NC 4.0"}, "name": "CORUM All Complexes", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "corum"}], "product_url": "https://mips.helmholtz-muenchen.de/corum/download/", "warnings": ["File was not able to be retrieved when checked on 2026-03-30_ Error connecting to URL_ HTTPSConnectionPool(host='mips.helmholtz-muenchen.de', port=443)_ Max retries exceeded with url_ /corum/download/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1028)')))", "File was not able to be retrieved when checked on 2026-03-30_ Error connecting to URL_ HTTPSConnectionPool(host='mips.helmholtz-muenchen.de', port=443)_ Max retries exceeded with url_ /corum/download/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-02-04_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2026-01-15_ Error connecting to URL_ HTTPSConnectionPool(host='mips.helmholtz-muenchen.de', port=443)_ Max retries exceeded with url_ /corum/download/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1017)')))"]}, {"category": "Product", "description": "Core dataset of manually curated, non-redundant protein complexes in CORUM in tab-delimited format", "format": "tsv", "id": "corum.core_complexes", "license": {"id": "https://creativecommons.org/licenses/by-nc/4.0/", "label": "CC BY-NC 4.0"}, "name": "CORUM Core Complexes", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "corum"}], "product_url": "https://mips.helmholtz-muenchen.de/corum/download/", "warnings": ["File was not able to be retrieved when checked on 2026-03-30_ Error connecting to URL_ HTTPSConnectionPool(host='mips.helmholtz-muenchen.de', port=443)_ Max retries exceeded with url_ /corum/download/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1028)')))", "File was not able to be retrieved when checked on 2026-03-30_ Error connecting to URL_ HTTPSConnectionPool(host='mips.helmholtz-muenchen.de', port=443)_ Max retries exceeded with url_ /corum/download/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-02-04_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2026-01-15_ Error connecting to URL_ HTTPSConnectionPool(host='mips.helmholtz-muenchen.de', port=443)_ Max retries exceeded with url_ /corum/download/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1017)')))"]}, {"category": "Product", "description": "Dataset of all CORUM protein complexes in PSI-MI XML format (Proteomics Standards Initiative)", "format": "psi_mi_xml", "id": "corum.psi_mi", "license": {"id": "https://creativecommons.org/licenses/by-nc/4.0/", "label": "CC BY-NC 4.0"}, "name": "CORUM PSI-MI", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "corum"}], "product_url": "https://mips.helmholtz-muenchen.de/corum/download/", "warnings": ["File was not able to be retrieved when checked on 2026-03-30_ Error connecting to URL_ HTTPSConnectionPool(host='mips.helmholtz-muenchen.de', port=443)_ Max retries exceeded with url_ /corum/download/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1028)')))", "File was not able to be retrieved when checked on 2026-03-30_ Error connecting to URL_ HTTPSConnectionPool(host='mips.helmholtz-muenchen.de', port=443)_ Max retries exceeded with url_ /corum/download/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-02-04_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2026-01-15_ Error connecting to URL_ HTTPSConnectionPool(host='mips.helmholtz-muenchen.de', port=443)_ Max retries exceeded with url_ /corum/download/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1017)')))"]}, {"category": "Product", "description": "Dataset of all CORUM protein complexes in PSI-MI MITAB 2.5 format", "format": "psi_mi_mitab", "id": "corum.mitab", "license": {"id": "https://creativecommons.org/licenses/by-nc/4.0/", "label": "CC BY-NC 4.0"}, "name": "CORUM MITAB", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "corum"}], "product_url": "https://mips.helmholtz-muenchen.de/corum/download/", "warnings": ["File was not able to be retrieved when checked on 2026-03-30_ Error connecting to URL_ HTTPSConnectionPool(host='mips.helmholtz-muenchen.de', port=443)_ Max retries exceeded with url_ /corum/download/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1028)')))", "File was not able to be retrieved when checked on 2026-03-30_ Error connecting to URL_ HTTPSConnectionPool(host='mips.helmholtz-muenchen.de', port=443)_ Max retries exceeded with url_ /corum/download/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-02-04_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2026-01-15_ Error connecting to URL_ HTTPSConnectionPool(host='mips.helmholtz-muenchen.de', port=443)_ Max retries exceeded with url_ /corum/download/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1017)')))"]}, {"category": "Product", "description": "Network embeddings of the Bioteque graph that represent biological entities and their associations", "format": "mixed", "id": "bioteque.embeddings", "name": "Bioteque Embeddings", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "achilles"}, {"relation_type": "prov:hadPrimarySource", "source": "bioteque"}, {"relation_type": "prov:hadPrimarySource", "source": "bto"}, {"relation_type": "prov:hadPrimarySource", "source": "ccle"}, {"relation_type": "prov:hadPrimarySource", "source": "cellosaurus"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "chemicalchecker"}, {"relation_type": "prov:hadPrimarySource", "source": "clue"}, {"relation_type": "prov:hadPrimarySource", "source": "compartments"}, {"relation_type": "prov:hadPrimarySource", "source": "corum"}, {"relation_type": "prov:hadPrimarySource", "source": "cosmic"}, {"relation_type": "prov:hadPrimarySource", "source": "creeds"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "depmap"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "dorothea"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "drugcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "gdsc"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gtex"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "huri"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "lincs"}, {"relation_type": "prov:hadPrimarySource", "source": "offsides"}, {"relation_type": "prov:hadPrimarySource", "source": "omnipath"}, {"relation_type": "prov:hadPrimarySource", "source": "opentargets"}, {"relation_type": "prov:hadPrimarySource", "source": "pharmacodb"}, {"relation_type": "prov:hadPrimarySource", "source": "prism"}, {"relation_type": "prov:hadPrimarySource", "source": "progeny"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "repodb"}, {"relation_type": "prov:hadPrimarySource", "source": "repohub"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}], "product_url": "https://bioteque.irbbarcelona.org/downloads/embeddings"}, {"category": "GraphProduct", "description": "Neo4j database dump of the Clinical Knowledge Graph and additional relationships", "dump_format": "neo4j", "edge_count": 220000000, "format": "mixed", "id": "clinicalkg.graph", "name": "CKG Graph Dump", "node_count": 16000000, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bto"}, {"relation_type": "prov:hadPrimarySource", "source": "cancer-genome-interpreter"}, {"relation_type": "prov:hadPrimarySource", "source": "clinicalkg"}, {"relation_type": "prov:hadPrimarySource", "source": "corum"}, {"relation_type": "prov:hadPrimarySource", "source": "dgidb"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "foodb"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "mi"}, {"relation_type": "prov:hadPrimarySource", "source": "mod"}, {"relation_type": "prov:hadPrimarySource", "source": "ms"}, {"relation_type": "prov:hadPrimarySource", "source": "mutationds"}, {"relation_type": "prov:hadPrimarySource", "source": "oncokb"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "phosphositeplus"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "signor"}, {"relation_type": "prov:hadPrimarySource", "source": "smpdb"}, {"relation_type": "prov:hadPrimarySource", "source": "snomedct"}, {"relation_type": "prov:hadPrimarySource", "source": "stitch"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "uo"}], "product_url": "https://data.mendeley.com/datasets/mrcf7f4tc2/1"}, {"category": "GraphProduct", "description": "Neo4j database dump of the Clinical Knowledge Graph and additional relationships", "dump_format": "neo4j", "edge_count": 220000000, "format": "mixed", "id": "cancer-genome-interpreter.clinicalkg.graph", "name": "CKG Graph Dump", "node_count": 16000000, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "stitch"}, {"relation_type": "prov:hadPrimarySource", "source": "smpdb"}, {"relation_type": "prov:hadPrimarySource", "source": "signor"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "phosphositeplus"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "oncokb"}, {"relation_type": "prov:hadPrimarySource", "source": "mutationds"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "foodb"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "dgidb"}, {"relation_type": "prov:hadPrimarySource", "source": "corum"}, {"relation_type": "prov:hadPrimarySource", "source": "cancer-genome-interpreter"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "bto"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "snomedct"}, {"relation_type": "prov:hadPrimarySource", "source": "mod"}, {"relation_type": "prov:hadPrimarySource", "source": "mi"}, {"relation_type": "prov:hadPrimarySource", "source": "ms"}, {"relation_type": "prov:hadPrimarySource", "source": "uo"}], "product_url": "https://data.mendeley.com/datasets/mrcf7f4tc2/1"}, {"category": "GraphProduct", "description": "Graph database dump and additional relationship files for the Clinical Knowledge Graph.", "format": "neo4j", "id": "ckg.graph", "latest_version": "1", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC BY 4.0"}, "name": "CKG Graph Database Dump", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bto"}, {"relation_type": "prov:hadPrimarySource", "source": "cancer-genome-interpreter"}, {"relation_type": "prov:hadPrimarySource", "source": "ckg"}, {"relation_type": "prov:hadPrimarySource", "source": "corum"}, {"relation_type": "prov:hadPrimarySource", "source": "dgidb"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "foodb"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "mi"}, {"relation_type": "prov:hadPrimarySource", "source": "mod"}, {"relation_type": "prov:hadPrimarySource", "source": "ms"}, {"relation_type": "prov:hadPrimarySource", "source": "mutationds"}, {"relation_type": "prov:hadPrimarySource", "source": "oncokb"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "phosphositeplus"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "signor"}, {"relation_type": "prov:hadPrimarySource", "source": "smpdb"}, {"relation_type": "prov:hadPrimarySource", "source": "snomedct"}, {"relation_type": "prov:hadPrimarySource", "source": "stitch"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "uo"}], "product_url": "https://data.mendeley.com/datasets/mrcf7f4tc2/1"}, {"category": "Product", "compression": "gzip", "description": "PC v14 integrated BioPAX Level 3 unified model containing normalized pathway data, molecular interactions, cross-database entity mappings, and metadata-derived content from 26 datasource rows.", "format": "biopax", "id": "pathwaycommons.biopax", "name": "Integrated BioPAX Model", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_file_size": 1700903742, "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/pc-biopax.owl.gz", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}, {"category": "Product", "description": "Harmonizome 3.0 processed dataset downloads, including dataset-specific association files and knowledge graph serialization downloads.", "format": "mixed", "id": "harmonizome.downloads", "name": "Harmonizome Downloads", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "harmonizome"}], "product_url": "https://maayanlab.cloud/Harmonizome/download", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "achilles"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogps"}, {"relation_type": "prov:wasDerivedFrom", "source": "ccle"}, {"relation_type": "prov:wasDerivedFrom", "source": "cellmarker"}, {"relation_type": "prov:wasDerivedFrom", "source": "chea"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "cmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "compartments"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "cosmic"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "depmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "encode"}, {"relation_type": "prov:wasDerivedFrom", "source": "gdsc"}, {"relation_type": "prov:wasDerivedFrom", "source": "geo"}, {"relation_type": "prov:wasDerivedFrom", "source": "glygen"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gtex"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "hpa"}, {"relation_type": "prov:wasDerivedFrom", "source": "hubmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "impc"}, {"relation_type": "prov:wasDerivedFrom", "source": "interpro"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "lincs-l1000"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "motrpac"}, {"relation_type": "prov:wasDerivedFrom", "source": "mp"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pfocr"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "tcga"}, {"relation_type": "prov:wasDerivedFrom", "source": "tissues"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "description": "Neo4j knowledge graph serialization of Harmonizome processed datasets, including genes, attributes, resources, datasets, and gene-attribute associations.", "dump_format": "neo4j", "format": "neo4j", "id": "harmonizome.kg-neo4j", "latest_version": "3.0", "name": "Harmonizome Knowledge Graph Neo4j Database", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "harmonizome"}], "product_url": "https://harmonizome-kg.maayanlab.cloud/", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "achilles"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogps"}, {"relation_type": "prov:wasDerivedFrom", "source": "ccle"}, {"relation_type": "prov:wasDerivedFrom", "source": "cellmarker"}, {"relation_type": "prov:wasDerivedFrom", "source": "chea"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "cmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "compartments"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "cosmic"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "depmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "encode"}, {"relation_type": "prov:wasDerivedFrom", "source": "gdsc"}, {"relation_type": "prov:wasDerivedFrom", "source": "geo"}, {"relation_type": "prov:wasDerivedFrom", "source": "glygen"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gtex"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "hpa"}, {"relation_type": "prov:wasDerivedFrom", "source": "hubmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "impc"}, {"relation_type": "prov:wasDerivedFrom", "source": "interpro"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "lincs-l1000"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "motrpac"}, {"relation_type": "prov:wasDerivedFrom", "source": "mp"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pfocr"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "tcga"}, {"relation_type": "prov:wasDerivedFrom", "source": "tissues"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "Product", "description": "Download directory for Pathway Commons PC v14 integrated pathway and molecular interaction datasets, including BioPAX, SIF, GMT, TXT, and JSON-LD products.", "format": "mixed", "id": "pathwaycommons.downloads", "name": "Pathway Commons Data Downloads", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}, {"category": "Product", "compression": "gzip", "description": "PC v14 Simple Interaction Format network file representing binary pairwise molecular relationships integrated from Pathway Commons upstream datasource rows.", "format": "sif", "id": "pathwaycommons.sif", "name": "SIF Network Format", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_file_size": 9810179, "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/pc-hgnc.sif.gz", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}, {"category": "Product", "compression": "gzip", "description": "PC v14 Gene Matrix Transposed gene sets for pathway enrichment analysis, derived from the integrated Pathway Commons pathway archive.", "format": "tsv", "id": "pathwaycommons.gmt", "name": "GMT Gene Set Format", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_file_size": 262513, "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/pc-hgnc.gmt.gz", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}, {"category": "Product", "compression": "gzip", "description": "PC v14 tab-delimited extended SIF node and edge file using HGNC-oriented identifiers for integrated Pathway Commons interactions.", "format": "txt", "id": "pathwaycommons.txt", "name": "Extended SIF TXT Format", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_file_size": 115608500, "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/pc-hgnc.txt.gz", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}, {"category": "ProgrammingInterface", "description": "REST API for searching identifiers and special keywords, mapping between data sources with a chain-query syntax, and retrieving entries across the integrated BioBTree databases.", "format": "http", "id": "biobtree.api", "is_public": true, "name": "BioBTree REST API", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "biobtree"}, {"relation_type": "prov:hadPrimarySource", "source": "alphafold"}, {"relation_type": "prov:hadPrimarySource", "source": "alphamissense"}, {"relation_type": "prov:hadPrimarySource", "source": "bao"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "bindingdb"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "brenda"}, {"relation_type": "prov:hadPrimarySource", "source": "cellphonedb"}, {"relation_type": "prov:hadPrimarySource", "source": "cellxgene"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "clinicaltrialsgov"}, {"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "collectri"}, {"relation_type": "prov:hadPrimarySource", "source": "corum"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "dbsnp"}, {"relation_type": "prov:hadPrimarySource", "source": "eco"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "encode"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "expressionatlas"}, {"relation_type": "prov:hadPrimarySource", "source": "fantom5"}, {"relation_type": "prov:hadPrimarySource", "source": "gencc"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "jaspar"}, {"relation_type": "prov:hadPrimarySource", "source": "lipidmaps"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "mirdb"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "msigdb"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "orphanet"}, {"relation_type": "prov:hadPrimarySource", "source": "pdb"}, {"relation_type": "prov:hadPrimarySource", "source": "pharmgkb"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "rhea"}, {"relation_type": "prov:hadPrimarySource", "source": "rnacentral"}, {"relation_type": "prov:hadPrimarySource", "source": "signor"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "surechembl"}, {"relation_type": "prov:hadPrimarySource", "source": "swisslipid"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}], "product_url": "https://sugi.bio/biobtree/api/"}, {"category": "GraphProduct", "compatibility": [{"standard": "biolink", "version": "4.2.1"}], "compression": "gzip", "description": "Human-scoped, Neo4j-ready subgraph of the BioBTree knowledge graph, exported as a biolink-typed KGX graph (~40M nodes / ~132M edges, ~8.3 GB compressed across separate node and edge files). A practical projection of the full graph for human-centric biomedical use. Published on Zenodo.", "edge_count": 132075627, "format": "kgx", "id": "biobtree.graph.human-subgraph", "license": {"id": "https://creativecommons.org/licenses/by-nc-sa/4.0/", "label": "CC-BY-NC-SA-4.0"}, "name": "BioBTree Knowledge Graph - Human Subgraph (KGX)", "node_categories": ["biolink:BiologicalProcess", "biolink:Cell", "biolink:CellLine", "biolink:CellularComponent", "biolink:CodingSequence", "biolink:Disease", "biolink:DiseaseOrPhenotypicFeature", "biolink:Drug", "biolink:Exon", "biolink:Gene", "biolink:GrossAnatomicalStructure", "biolink:MacromolecularComplex", "biolink:MolecularActivity", "biolink:NoncodingRNAProduct", "biolink:NucleicAcidSequenceMotif", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:ProteinDomain", "biolink:ProteinFamily", "biolink:Publication", "biolink:RegulatoryRegion", "biolink:SequenceVariant", "biolink:SmallMolecule", "biolink:Transcript"], "node_count": 40160474, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "biobtree"}, {"relation_type": "prov:hadPrimarySource", "source": "alphafold"}, {"relation_type": "prov:hadPrimarySource", "source": "alphamissense"}, {"relation_type": "prov:hadPrimarySource", "source": "bao"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "bindingdb"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "brenda"}, {"relation_type": "prov:hadPrimarySource", "source": "cellphonedb"}, {"relation_type": "prov:hadPrimarySource", "source": "cellxgene"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "clinicaltrialsgov"}, {"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "collectri"}, {"relation_type": "prov:hadPrimarySource", "source": "corum"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "dbsnp"}, {"relation_type": "prov:hadPrimarySource", "source": "eco"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "encode"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "expressionatlas"}, {"relation_type": "prov:hadPrimarySource", "source": "fantom5"}, {"relation_type": "prov:hadPrimarySource", "source": "gencc"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "jaspar"}, {"relation_type": "prov:hadPrimarySource", "source": "lipidmaps"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "mirdb"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "msigdb"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "orphanet"}, {"relation_type": "prov:hadPrimarySource", "source": "pdb"}, {"relation_type": "prov:hadPrimarySource", "source": "pharmgkb"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "rhea"}, {"relation_type": "prov:hadPrimarySource", "source": "rnacentral"}, {"relation_type": "prov:hadPrimarySource", "source": "signor"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "surechembl"}, {"relation_type": "prov:hadPrimarySource", "source": "swisslipid"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}], "predicates": ["biolink:actively_involved_in", "biolink:affects", "biolink:associated_with", "biolink:close_match", "biolink:derives_from", "biolink:directly_physically_interacts_with", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:gene_product_of", "biolink:has_adverse_event", "biolink:has_gene_product", "biolink:has_part", "biolink:has_participant", "biolink:has_phenotype", "biolink:in_clinical_trials_for", "biolink:in_taxon", "biolink:interacts_with", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:member_of", "biolink:mentions", "biolink:orthologous_to", "biolink:paralogous_to", "biolink:participates_in", "biolink:physically_interacts_with", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:transcribed_from", "biolink:translates_to", "biolink:treats_or_applied_or_studied_to_treat"], "product_url": "https://zenodo.org/records/20816742"}], "publications": [{"authors": ["George Tsitsiridis", "Ralph Steinkamp", "Madalina Giurgiu", "Barbara Brauner", "Gisela Fobo", "Goar Frishman", "Corinna Montrone", "Andreas Ruepp"], "doi": "10.1093/nar/gkac1015", "id": "doi:10.1093/nar/gkac1015", "journal": "Nucleic Acids Research", "preferred": true, "title": "CORUM: the comprehensive resource of mammalian protein complexes\u20132022", "year": "2023"}, {"authors": ["Madalina Giurgiu", "Julian Reinhard", "Barbara Brauner", "Irmtraud Dunger-Kaltenbach", "Gisela Fobo", "Goar Frishman", "Corinna Montrone", "Andreas Ruepp"], "doi": "10.1093/nar/gky973", "id": "doi:10.1093/nar/gky973", "journal": "Nucleic Acids Research", "title": "CORUM: the comprehensive resource of mammalian protein complexes\u20142019", "year": "2019"}, {"authors": ["Andreas Ruepp", "Barbara Brauner", "Irmtraud Dunger-Kaltenbach", "Goar Frishman", "Corinna Montrone", "Michael Stransky", "Brigitte Waegele", "Thorsten Schmidt", "Octave Noubibou Doudieu", "Volker St\u00fcmpflen", "Hans-Werner Mewes"], "doi": "10.1093/nar/gkp914", "id": "doi:10.1093/nar/gkp914", "journal": "Nucleic Acids Research", "title": "CORUM: the comprehensive resource of mammalian protein complexes\u20142009", "year": "2010"}], "repository": "https://mips.helmholtz-muenchen.de/corum/download", "taxon": ["NCBITaxon:40674", "NCBITaxon:10090", "NCBITaxon:10116", "NCBITaxon:9606"]}