Chemical Entities of Biological Interest
A structured classification of molecular entities of biological interest focusing on 'small' chemical compounds.
[{"category": "Individual", "contact_details": [{"contact_type": "email", "value": "amalik@ebi.ac.uk"}, {"contact_type": "github", "value": "amalik01"}], "label": "Adnan Malik", "orcid": "0000-0001-8123-5351"}]
[{"category": "OntologyProduct", "description": "Chemical Entities of Biological Interest in OWL format", "format": "owl", "id": "chebi.owl", "name": "chebi.owl", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chebi"}], "product_url": "http://purl.obolibrary.org/obo/chebi.owl"}, {"category": "OntologyProduct", "description": "Chemical Entities of Biological Interest in OBO format", "format": "obo", "id": "chebi.obo", "name": "chebi.obo", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chebi"}], "product_url": "http://purl.obolibrary.org/obo/chebi.obo"}, {"category": "OntologyProduct", "description": "Chemical Entities of Biological Interest in JSON format", "format": "json", "id": "chebi.json", "name": "chebi.json", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chebi"}], "product_file_size": 506456231, "product_url": "http://purl.obolibrary.org/obo/chebi.json"}, {"category": "OntologyProduct", "description": "chebi, compressed owl", "format": "owl", "id": "chebi.owl.gz", "name": "chebi, compressed owl", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chebi"}], "product_file_size": 62947851, "product_url": "http://purl.obolibrary.org/obo/chebi.owl.gz"}, {"category": "OntologyProduct", "description": "chebi_lite, no syns or xrefs", "format": "obo", "id": "chebi.chebi_lite.obo", "name": "chebi_lite, no syns or xrefs", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chebi"}], "product_url": "http://purl.obolibrary.org/obo/chebi/chebi_lite.obo"}, {"category": "OntologyProduct", "description": "chebi_core, no xrefs", "format": "obo", "id": "chebi.chebi_core.obo", "name": "chebi_core, no xrefs", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chebi"}], "product_url": "http://purl.obolibrary.org/obo/chebi/chebi_core.obo"}, {"category": "GraphProduct", "description": "Turnkey neo4j distributions that deploy fully-indexed, standalone UBKG instances as neo4j graph databases, running in a Docker container. Requires UMLS API key to access.", "dump_format": "neo4j", "id": "ubkg.neo4j", "name": "UBKG Neo4j Docker Distribution", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "4dn"}, {"relation_type": "prov:hadPrimarySource", "source": "biomarker"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "clingen"}, {"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "connectivitymap"}, {"relation_type": "prov:hadPrimarySource", "source": "dct"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "edam"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "erccrbp"}, {"relation_type": "prov:hadPrimarySource", "source": "erccreg"}, {"relation_type": "prov:hadPrimarySource", "source": "faldo"}, {"relation_type": "prov:hadPrimarySource", "source": "gencode"}, {"relation_type": "prov:hadPrimarySource", "source": "glycocoo"}, {"relation_type": "prov:hadPrimarySource", "source": "glycordf"}, {"relation_type": "prov:hadPrimarySource", "source": "gtex"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "hra"}, {"relation_type": "prov:hadPrimarySource", "source": "hsapdv"}, {"relation_type": "prov:hadPrimarySource", "source": "hubmap"}, {"relation_type": "prov:hadPrimarySource", "source": "icd10"}, {"relation_type": "prov:hadPrimarySource", "source": "kidsfirst"}, {"relation_type": "prov:hadPrimarySource", "source": "lincs"}, {"relation_type": "prov:hadPrimarySource", "source": "loinc"}, {"relation_type": "prov:hadPrimarySource", "source": "mi"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "motrpac"}, {"relation_type": "prov:hadPrimarySource", "source": "mp"}, {"relation_type": "prov:hadPrimarySource", "source": "msigdb"}, {"relation_type": "prov:hadPrimarySource", "source": "mw"}, {"relation_type": "prov:hadPrimarySource", "source": "npo"}, {"relation_type": "prov:hadPrimarySource", "source": "obi"}, {"relation_type": "prov:hadPrimarySource", "source": "obib"}, {"relation_type": "prov:hadPrimarySource", "source": "opentargets"}, {"relation_type": "prov:hadPrimarySource", "source": "ordo"}, {"relation_type": "prov:hadPrimarySource", "source": "pato"}, {"relation_type": "prov:hadPrimarySource", "source": "pgo"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "sbo"}, {"relation_type": "prov:hadPrimarySource", "source": "sckan"}, {"relation_type": "prov:hadPrimarySource", "source": "sennet"}, {"relation_type": "prov:hadPrimarySource", "source": "snomedct"}, {"relation_type": "prov:hadPrimarySource", "source": "stellar"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "ubkg"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "uo"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}], "product_url": "https://ubkg-downloads.xconsortia.org/"}, {"category": "GraphProduct", "description": "Ontology CSV files that can be imported into a neo4j instance to create a UBKG database. Requires UMLS API key to access.", "format": "csv", "id": "ubkg.csv", "name": "UBKG Ontology CSV Files", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "4dn"}, {"relation_type": "prov:hadPrimarySource", "source": "biomarker"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "clingen"}, {"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "connectivitymap"}, {"relation_type": "prov:hadPrimarySource", "source": "dct"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "edam"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "erccrbp"}, {"relation_type": "prov:hadPrimarySource", "source": "erccreg"}, {"relation_type": "prov:hadPrimarySource", "source": "faldo"}, {"relation_type": "prov:hadPrimarySource", "source": "gencode"}, {"relation_type": "prov:hadPrimarySource", "source": "glycocoo"}, {"relation_type": "prov:hadPrimarySource", "source": "glycordf"}, {"relation_type": "prov:hadPrimarySource", "source": "gtex"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "hra"}, {"relation_type": "prov:hadPrimarySource", "source": "hsapdv"}, {"relation_type": "prov:hadPrimarySource", "source": "hubmap"}, {"relation_type": "prov:hadPrimarySource", "source": "icd10"}, {"relation_type": "prov:hadPrimarySource", "source": "kidsfirst"}, {"relation_type": "prov:hadPrimarySource", "source": "lincs"}, {"relation_type": "prov:hadPrimarySource", "source": "loinc"}, {"relation_type": "prov:hadPrimarySource", "source": "mi"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "motrpac"}, {"relation_type": "prov:hadPrimarySource", "source": "mp"}, {"relation_type": "prov:hadPrimarySource", "source": "msigdb"}, {"relation_type": "prov:hadPrimarySource", "source": "mw"}, {"relation_type": "prov:hadPrimarySource", "source": "npo"}, {"relation_type": "prov:hadPrimarySource", "source": "obi"}, {"relation_type": "prov:hadPrimarySource", "source": "obib"}, {"relation_type": "prov:hadPrimarySource", "source": "opentargets"}, {"relation_type": "prov:hadPrimarySource", "source": "ordo"}, {"relation_type": "prov:hadPrimarySource", "source": "pato"}, {"relation_type": "prov:hadPrimarySource", "source": "pgo"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "sbo"}, {"relation_type": "prov:hadPrimarySource", "source": "sckan"}, {"relation_type": "prov:hadPrimarySource", "source": "sennet"}, {"relation_type": "prov:hadPrimarySource", "source": "snomedct"}, {"relation_type": "prov:hadPrimarySource", "source": "stellar"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "ubkg"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "uo"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}], "product_url": "https://ubkg-downloads.xconsortia.org/"}, {"category": "Product", "description": "Network embeddings of the Bioteque graph that represent biological entities and their associations", "id": "bioteque.embeddings", "name": "Bioteque Embeddings", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "achilles"}, {"relation_type": "prov:hadPrimarySource", "source": "bioteque"}, {"relation_type": "prov:hadPrimarySource", "source": "bto"}, {"relation_type": "prov:hadPrimarySource", "source": "ccle"}, {"relation_type": "prov:hadPrimarySource", "source": "cellosaurus"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "chemicalchecker"}, {"relation_type": "prov:hadPrimarySource", "source": "clue"}, {"relation_type": "prov:hadPrimarySource", "source": "compartments"}, {"relation_type": "prov:hadPrimarySource", "source": "corum"}, {"relation_type": "prov:hadPrimarySource", "source": "cosmic"}, {"relation_type": "prov:hadPrimarySource", "source": "creeds"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "depmap"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "dorothea"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "drugcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "gdsc"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gtex"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "huri"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "lincs"}, {"relation_type": "prov:hadPrimarySource", "source": "offsides"}, {"relation_type": "prov:hadPrimarySource", "source": "omnipath"}, {"relation_type": "prov:hadPrimarySource", "source": "opentargets"}, {"relation_type": "prov:hadPrimarySource", "source": "pharmacodb"}, {"relation_type": "prov:hadPrimarySource", "source": "prism"}, {"relation_type": "prov:hadPrimarySource", "source": "progeny"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "repodb"}, {"relation_type": "prov:hadPrimarySource", "source": "repohub"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}], "product_url": "https://bioteque.irbbarcelona.org/downloads/embeddings"}, {"category": "GraphProduct", "compression": "targz", "description": "Raw source files for all KG-Microbe framework transforms (all 4 KGs)", "format": "kgx", "id": "kg-microbe.graph.raw", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0 1.0"}, "name": "KG-Microbe KGX Graph - Raw", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bacdive"}, {"relation_type": "prov:hadPrimarySource", "source": "bactotraits"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "disbiome"}, {"relation_type": "prov:hadPrimarySource", "source": "ec"}, {"relation_type": "prov:hadPrimarySource", "source": "envo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-microbe"}, {"relation_type": "prov:hadPrimarySource", "source": "mediadive"}, {"relation_type": "prov:hadPrimarySource", "source": "metpo"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "rhea"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}], "product_file_size": 12464495186, "product_url": "https://portal.nersc.gov/project/m4689/KGMicrobe-raw-20250222.tar.gz"}, {"category": "GraphProduct", "compression": "targz", "description": "The core KG KG-Microbe-Core with ontologies, organismal traits, and growth preferences.", "format": "kgx", "id": "kg-microbe.graph.core", "name": "KG-Microbe KGX Graph - Core", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bacdive"}, {"relation_type": "prov:hadPrimarySource", "source": "bactotraits"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "disbiome"}, {"relation_type": "prov:hadPrimarySource", "source": "ec"}, {"relation_type": "prov:hadPrimarySource", "source": "envo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-microbe"}, {"relation_type": "prov:hadPrimarySource", "source": "mediadive"}, {"relation_type": "prov:hadPrimarySource", "source": "metpo"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "rhea"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}], "product_url": "https://github.com/Knowledge-Graph-Hub/kg-microbe/releases/latest"}, {"category": "GraphProduct", "compression": "targz", "description": "Core plus human biomedical data (ontologies, CTD, Wallen et al)", "format": "kgx", "id": "kg-microbe.graph.biomedical", "name": "KG-Microbe KGX Graph - Biomedical", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bacdive"}, {"relation_type": "prov:hadPrimarySource", "source": "bactotraits"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "disbiome"}, {"relation_type": "prov:hadPrimarySource", "source": "ec"}, {"relation_type": "prov:hadPrimarySource", "source": "envo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-microbe"}, {"relation_type": "prov:hadPrimarySource", "source": "mediadive"}, {"relation_type": "prov:hadPrimarySource", "source": "metpo"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "rhea"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}], "product_url": "https://github.com/Knowledge-Graph-Hub/kg-microbe/releases/latest"}, {"category": "GraphProduct", "compression": "targz", "description": "Core plus Uniprot genome annotations", "format": "kgx", "id": "kg-microbe.graph.function", "name": "KG-Microbe KGX Graph - Function", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bacdive"}, {"relation_type": "prov:hadPrimarySource", "source": "bactotraits"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "disbiome"}, {"relation_type": "prov:hadPrimarySource", "source": "ec"}, {"relation_type": "prov:hadPrimarySource", "source": "envo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-microbe"}, {"relation_type": "prov:hadPrimarySource", "source": "mediadive"}, {"relation_type": "prov:hadPrimarySource", "source": "metpo"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "rhea"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}], "product_file_size": 4623010863, "product_url": "https://portal.nersc.gov/project/m4689/KGMicrobe-function-20250222.tar.gz"}, {"category": "GraphProduct", "compression": "targz", "description": "Biomedical plus Uniprot genome annotations", "format": "kgx", "id": "kg-microbe.graph.biomedical-function", "name": "KG-Microbe KGX Graph - Biomedical-Function", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bacdive"}, {"relation_type": "prov:hadPrimarySource", "source": "bactotraits"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "disbiome"}, {"relation_type": "prov:hadPrimarySource", "source": "ec"}, {"relation_type": "prov:hadPrimarySource", "source": "envo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-microbe"}, {"relation_type": "prov:hadPrimarySource", "source": "mediadive"}, {"relation_type": "prov:hadPrimarySource", "source": "metpo"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "rhea"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}], "product_file_size": 4640682152, "product_url": "https://portal.nersc.gov/project/m4689/KGMicrobe-biomedical-function-20250222.tar.gz"}, {"category": "GraphProduct", "description": "Core UniBioMap graph edges file.", "format": "csv", "id": "unibiomap.links", "name": "UniBioMap Graph Links", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "unibiomap"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "bindingdb"}, {"relation_type": "prov:hadPrimarySource", "source": "foodb"}, {"relation_type": "prov:hadPrimarySource", "source": "tcdb"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "stitch"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "unichem"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "batman"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "compath"}, {"relation_type": "prov:hadPrimarySource", "source": "phosphositeplus"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "smpdb"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "medgen"}, {"relation_type": "prov:hadPrimarySource", "source": "umls"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "inchikey"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}], "product_file_size": 1406201678, "product_url": "https://aideepmed.com/UniBioMap/database/unibiomap/unibiomap.links.csv"}, {"category": "GraphProduct", "description": "Auxiliary UniBioMap graph annotations and metadata.", "format": "tsv", "id": "unibiomap.auxs", "name": "UniBioMap Graph Auxiliaries", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "unibiomap"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "bindingdb"}, {"relation_type": "prov:hadPrimarySource", "source": "foodb"}, {"relation_type": "prov:hadPrimarySource", "source": "tcdb"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "stitch"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "unichem"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "batman"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "compath"}, {"relation_type": "prov:hadPrimarySource", "source": "phosphositeplus"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "smpdb"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "medgen"}, {"relation_type": "prov:hadPrimarySource", "source": "umls"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "inchikey"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}], "product_file_size": 591290539, "product_url": "https://aideepmed.com/UniBioMap/database/unibiomap/unibiomap.auxs.tsv"}, {"category": "GraphProduct", "description": "Predicted UniBioMap graph edges with confidence scores.", "format": "csv", "id": "unibiomap.pred", "name": "UniBioMap Predicted Graph", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "unibiomap"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "bindingdb"}, {"relation_type": "prov:hadPrimarySource", "source": "foodb"}, {"relation_type": "prov:hadPrimarySource", "source": "tcdb"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "stitch"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "unichem"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "batman"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "compath"}, {"relation_type": "prov:hadPrimarySource", "source": "phosphositeplus"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "smpdb"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "medgen"}, {"relation_type": "prov:hadPrimarySource", "source": "umls"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "inchikey"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}], "product_file_size": 2484982268, "product_url": "https://aideepmed.com/UniBioMap/database/unibiomap/unibiomap.pred.csv"}, {"category": "GraphProduct", "description": "Full unfiltered UniBioMap predicted graph edges file.", "format": "csv", "id": "unibiomap.pred.full", "name": "UniBioMap Predicted Graph (Full)", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "unibiomap"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "bindingdb"}, {"relation_type": "prov:hadPrimarySource", "source": "foodb"}, {"relation_type": "prov:hadPrimarySource", "source": "tcdb"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "stitch"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "unichem"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "batman"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "compath"}, {"relation_type": "prov:hadPrimarySource", "source": "phosphositeplus"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "smpdb"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "medgen"}, {"relation_type": "prov:hadPrimarySource", "source": "umls"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "inchikey"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}], "product_file_size": 6303875907, "product_url": "https://aideepmed.com/UniBioMap/database/unibiomap/unibiomap.pred.full.csv"}, {"category": "GraphProduct", "description": "The integrative Biomedical Knowledge Hub (iBKH) knowledge graph, harmonizing and integrating information from diverse biomedical resources including DRKG, iDISK, and multiple databases (BRENDA, CTD, DrugBank, KEGG, PharmGKB, Reactome, SIDER, and others).", "id": "ibkh.graph", "name": "iBKH Knowledge Graph", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "brenda"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "drkg"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "ibkh"}, {"relation_type": "prov:hadPrimarySource", "source": "idisk"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "pharmgkb"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}]}, {"category": "MappingProduct", "description": "bigg.metabolite SSSOM", "format": "sssom", "id": "obo-db-ingest.bigg.metabolite.sssom.tsv", "license": {"id": "http://bigg.ucsd.edu/license#license", "label": "Custom"}, "name": "bigg.metabolite SSSOM", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bigg"}, {"relation_type": "prov:hadPrimarySource", "source": "biocyc"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "obo-db-ingest"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}], "product_file_size": 400516, "product_url": "https://w3id.org/biopragmatics/resources/bigg.metabolite/bigg.metabolite.sssom.tsv"}, {"description": "The MechRepoNet knowledge graph in its original format", "id": "mechreponet.kg", "name": "MechRepoNet Knowledge Graph", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "biolink"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "complexportal"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hetionet"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "mechreponet"}, {"relation_type": "prov:hadPrimarySource", "source": "mirtarbase"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "pr"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "rnacentral"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "unii"}], "product_url": "https://github.com/SuLab/MechRepoNet/releases/tag/publication"}, {"category": "ProgrammingInterface", "description": "Plover-hosted TRAPI web API for querying the Multiomics Microbiome knowledge graph", "format": "http", "id": "microbiomekg.api", "is_public": true, "name": "MicrobiomeKG Plover TRAPI API", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "biolink"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "eupathdb"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "microbiomekg"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "ncit"}, {"relation_type": "prov:hadPrimarySource", "source": "panther"}, {"relation_type": "prov:hadPrimarySource", "source": "pr"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "rhea"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}], "product_url": "https://multiomics.transltr.io/mbkp"}, {"category": "GraphProduct", "description": "PheKnowLator graph files, including subsets with and without inverse relations.", "format": "owl", "id": "pheknowlator.graph", "latest_version": "current_build", "name": "PheKnowLator graph", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bioportal"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "clo"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "genemania"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "medgen"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "pheknowlator"}, {"relation_type": "prov:hadPrimarySource", "source": "pr"}, {"relation_type": "prov:hadPrimarySource", "source": "pw"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "ro"}, {"relation_type": "prov:hadPrimarySource", "source": "so"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "vo"}], "product_url": "https://console.cloud.google.com/storage/browser/pheknowlator/current_build/knowledge_graphs?pageState=(%22StorageObjectListTable%22:(%22f%22:%22%255B%255D%22))&inv=1&invt=Ab5_1Q&project=pheknowlator", "versions": ["v1.0.0", "v2.0.0", "v2.1.0", "v3.0.2", "v4.0.0", "current_build"]}, {"category": "GraphProduct", "description": "Nodes for KGX distribution of the RTX-KG2 (RTX-KG2.10.1c)", "format": "kgx-jsonl", "id": "rtx-kg2.graph.nodes", "name": "RTX-KG2.10.1c KGX JSONL Nodes", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "drugcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "dgidb"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "gtopdb"}, {"relation_type": "prov:hadPrimarySource", "source": "rtx-kg2"}, {"relation_type": "prov:hadPrimarySource", "source": "semmeddb"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "umls"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "smpdb"}], "product_file_size": 376501785, "product_url": "https://rtx-kg2-public.s3.us-west-2.amazonaws.com/kg2c-2.10.1-v1.0-nodes.jsonl.gz"}, {"category": "GraphProduct", "description": "Edges for KGX distribution of the RTX-KG2 (RTX-KG2.10.1c)", "format": "kgx-jsonl", "id": "rtx-kg2.graph.edges", "name": "RTX-KG2.10.1c KGX JSONL Edges", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "drugcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "dgidb"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "gtopdb"}, {"relation_type": "prov:hadPrimarySource", "source": "rtx-kg2"}, {"relation_type": "prov:hadPrimarySource", "source": "semmeddb"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "umls"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "smpdb"}], "product_file_size": 1807360397, "product_url": "https://rtx-kg2-public.s3.us-west-2.amazonaws.com/kg2c-2.10.1-v1.0-edges.jsonl.gz"}, {"category": "ProgrammingInterface", "description": "Neo4j distribution of the RTX-KG2 as a graph database", "dump_format": "neo4j", "id": "rtx-kg2.neo4j", "is_neo4j": true, "is_public": false, "name": "RTX-KG2 Neo4j", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "drugcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "dgidb"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "gtopdb"}, {"relation_type": "prov:hadPrimarySource", "source": "rtx-kg2"}, {"relation_type": "prov:hadPrimarySource", "source": "semmeddb"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "umls"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "smpdb"}], "product_url": "https://arax.ncats.io/"}, {"category": "GraphProduct", "description": "KGX distribution of the ICEES Exposures KP in Knowledge Graph Exchange (KGX) format, containing integrated clinical and environmental exposures data as a knowledge graph with 226 nodes and 14,342 edges", "format": "kgx-jsonl", "id": "icees-kg.graph", "name": "KGX distribution of the ICEES Exposures KP", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "umls"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "icees-kg"}], "product_url": "https://stars.renci.org/var/plater/bl-4.2.1/icees-kg/1.5.0/"}, {"category": "ProgrammingInterface", "description": "Translator Reasoner API (TRAPI) endpoint for querying ICEES KG using standardized Translator protocols", "format": "http", "id": "icees-kg.trapi", "name": "ICEES KG TRAPI API", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "umls"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "icees-kg"}, {"relation_type": "prov:hadPrimarySource", "source": "translator"}], "product_url": "https://robokop.renci.org/api-docs/docs/automat/icees-kg-trapi"}, {"category": "Product", "description": "Meta knowledge graph and metadata describing the data sources, node types, edge types, and predicates available in ICEES KG", "format": "json", "id": "icees-kg.metadata", "name": "ICEES KG Metadata", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "umls"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "icees-kg"}, {"relation_type": "prov:hadPrimarySource", "source": "translator"}], "product_url": "https://robokop.renci.org/api-docs/docs/automat/metadata-metadata-get-icees-kg"}, {"category": "GraphProduct", "description": "Downloadable knowledge graph dump in TAR/GZ format containing complete FORUM data", "id": "forum.graph.dump", "name": "FORUM Knowledge Graph Dump", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "cheminf"}, {"relation_type": "prov:hadPrimarySource", "source": "chemont"}, {"relation_type": "prov:hadPrimarySource", "source": "cito"}, {"relation_type": "prov:hadPrimarySource", "source": "dc"}, {"relation_type": "prov:hadPrimarySource", "source": "fabio"}, {"relation_type": "prov:hadPrimarySource", "source": "forum"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmed"}, {"relation_type": "prov:hadPrimarySource", "source": "skos"}], "product_url": "ftp://forum:Forum2021Cov!@ftp.semantic-metabolomics.org/dumps/2021/share.tar.gz", "warnings": ["File was not able to be retrieved when checked on 2026-06-05: FTP error: timed out", "File was not able to be retrieved when checked on 2026-03-30_ FTP error_ timed out"]}, {"category": "GraphProduct", "description": "RNA-KG as a Neo4j Dump", "format": "neo4j", "id": "rna-kg.kg.neo4j", "name": "RNA-KG Neo4j Dump", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "circbase"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "cosmic"}, {"relation_type": "prov:hadPrimarySource", "source": "dbsnp"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "pr"}, {"relation_type": "prov:hadPrimarySource", "source": "pw"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "rna-kg"}, {"relation_type": "prov:hadPrimarySource", "source": "rnacentral"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "vo"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}], "product_file_size": 3976840239, "product_url": "https://rna-kg.biodata.di.unimi.it/rnakgv20.dump"}, {"category": "GraphProduct", "description": "RNA-KG Nodes in CSV format", "format": "csv", "id": "rna-kg.kg.nodes", "name": "RNA-KG Nodes", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "circbase"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "cosmic"}, {"relation_type": "prov:hadPrimarySource", "source": "dbsnp"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "pr"}, {"relation_type": "prov:hadPrimarySource", "source": "pw"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "rna-kg"}, {"relation_type": "prov:hadPrimarySource", "source": "rnacentral"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "vo"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}], "product_file_size": 4424633304, "product_url": "https://rna-kg.biodata.di.unimi.it/nodes.csv"}, {"category": "GraphProduct", "description": "RNA-KG Edges in CSV format", "format": "csv", "id": "rna-kg.kg.edges", "name": "RNA-KG Edges", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "circbase"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "cosmic"}, {"relation_type": "prov:hadPrimarySource", "source": "dbsnp"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "pr"}, {"relation_type": "prov:hadPrimarySource", "source": "pw"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "rna-kg"}, {"relation_type": "prov:hadPrimarySource", "source": "rnacentral"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "vo"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}], "product_file_size": 18370248815, "product_url": "https://rna-kg.biodata.di.unimi.it/edges.csv"}, {"category": "OntologyProduct", "description": "The latest release of EFO in OWL format", "format": "owl", "id": "efo.owl", "name": "EFO OWL", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bfo"}, {"relation_type": "prov:hadPrimarySource", "source": "bto"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "clo"}, {"relation_type": "prov:hadPrimarySource", "source": "cob"}, {"relation_type": "prov:hadPrimarySource", "source": "dc"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "ecto"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "fbbt"}, {"relation_type": "prov:hadPrimarySource", "source": "fbdv"}, {"relation_type": "prov:hadPrimarySource", "source": "fma"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hancestro"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "iao"}, {"relation_type": "prov:hadPrimarySource", "source": "ido"}, {"relation_type": "prov:hadPrimarySource", "source": "ma"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "mp"}, {"relation_type": "prov:hadPrimarySource", "source": "mpath"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "ncit"}, {"relation_type": "prov:hadPrimarySource", "source": "oba"}, {"relation_type": "prov:hadPrimarySource", "source": "obi"}, {"relation_type": "prov:hadPrimarySource", "source": "ogms"}, {"relation_type": "prov:hadPrimarySource", "source": "oio"}, {"relation_type": "prov:hadPrimarySource", "source": "omit"}, {"relation_type": "prov:hadPrimarySource", "source": "omo"}, {"relation_type": "prov:hadPrimarySource", "source": "ordo"}, {"relation_type": "prov:hadPrimarySource", "source": "pato"}, {"relation_type": "prov:hadPrimarySource", "source": "po"}, {"relation_type": "prov:hadPrimarySource", "source": "pr"}, {"relation_type": "prov:hadPrimarySource", "source": "ro"}, {"relation_type": "prov:hadPrimarySource", "source": "semapv"}, {"relation_type": "prov:hadPrimarySource", "source": "skos"}, {"relation_type": "prov:hadPrimarySource", "source": "so"}, {"relation_type": "prov:hadPrimarySource", "source": "to"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "uo"}, {"relation_type": "prov:hadPrimarySource", "source": "wbls"}, {"relation_type": "prov:hadPrimarySource", "source": "zfa"}], "product_file_size": 240665663, "product_url": "https://www.ebi.ac.uk/efo/efo.owl"}, {"category": "OntologyProduct", "description": "The latest release of EFO in OBO format", "format": "obo", "id": "efo.obo", "name": "EFO OBO", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bfo"}, {"relation_type": "prov:hadPrimarySource", "source": "bto"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "clo"}, {"relation_type": "prov:hadPrimarySource", "source": "cob"}, {"relation_type": "prov:hadPrimarySource", "source": "dc"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "ecto"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "fbbt"}, {"relation_type": "prov:hadPrimarySource", "source": "fbdv"}, {"relation_type": "prov:hadPrimarySource", "source": "fma"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hancestro"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "iao"}, {"relation_type": "prov:hadPrimarySource", "source": "ido"}, {"relation_type": "prov:hadPrimarySource", "source": "ma"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "mp"}, {"relation_type": "prov:hadPrimarySource", "source": "mpath"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "ncit"}, {"relation_type": "prov:hadPrimarySource", "source": "oba"}, {"relation_type": "prov:hadPrimarySource", "source": "obi"}, {"relation_type": "prov:hadPrimarySource", "source": "ogms"}, {"relation_type": "prov:hadPrimarySource", "source": "oio"}, {"relation_type": "prov:hadPrimarySource", "source": "omit"}, {"relation_type": "prov:hadPrimarySource", "source": "omo"}, {"relation_type": "prov:hadPrimarySource", "source": "ordo"}, {"relation_type": "prov:hadPrimarySource", "source": "pato"}, {"relation_type": "prov:hadPrimarySource", "source": "po"}, {"relation_type": "prov:hadPrimarySource", "source": "pr"}, {"relation_type": "prov:hadPrimarySource", "source": "ro"}, {"relation_type": "prov:hadPrimarySource", "source": "semapv"}, {"relation_type": "prov:hadPrimarySource", "source": "skos"}, {"relation_type": "prov:hadPrimarySource", "source": "so"}, {"relation_type": "prov:hadPrimarySource", "source": "to"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "uo"}, {"relation_type": "prov:hadPrimarySource", "source": "wbls"}, {"relation_type": "prov:hadPrimarySource", "source": "zfa"}], "product_file_size": 64058275, "product_url": "https://www.ebi.ac.uk/efo/efo.obo"}, {"category": "GraphProduct", "description": "Nodes for the Drug Approvals KP, v0.3.9", "format": "kgx", "id": "drug-approvals-kp.graph.nodes", "name": "Drug Approvals KP Graph Nodes", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "drug-approvals-kp"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}], "product_file_size": 701451, "product_url": "https://db.systemsbiology.net/gestalt/KG/drug_approvals_kg_nodes_v0.3.9.tsv"}, {"category": "GraphProduct", "description": "Edges for the Drug Approvals KP, v0.3.9", "format": "kgx", "id": "drug-approvals-kp.graph.edges", "name": "Drug Approvals KP Graph Edges", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "drug-approvals-kp"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}], "product_file_size": 31052966, "product_url": "https://db.systemsbiology.net/gestalt/KG/drug_approvals_kg_edges_v0.3.9.tsv"}, {"category": "GraphProduct", "compatibility": [{"standard": "biolink"}], "compression": "zip", "description": "Curated mechanistic drug\u2013disease paths comprising the DrugMechDB dataset packaged as a downloadable archive.", "dump_format": "other", "format": "mixed", "id": "drugmechdb.graph", "latest_version": "2.0.1", "name": "DrugMechDB Graph Dataset", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "drugmechdb"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "pr"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}], "product_url": "https://doi.org/10.5281/zenodo.8139357", "repository": "https://github.com/SuLab/DrugMechDB", "versions": ["2.0.1", "2.0.0", "1.0.2", "1.0"]}, {"category": "GraphProduct", "description": "RDF dump of the Open Research Knowledge Graph distributed in N-Triples format.", "format": "ntriples", "id": "orkg.dump", "name": "ORKG RDF Dump", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "orkg"}, {"relation_type": "prov:hadPrimarySource", "source": "wikidata"}, {"relation_type": "prov:hadPrimarySource", "source": "geonames"}, {"relation_type": "prov:hadPrimarySource", "source": "ncit"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "clo"}, {"relation_type": "prov:hadPrimarySource", "source": "omit"}, {"relation_type": "prov:hadPrimarySource", "source": "iao"}, {"relation_type": "prov:hadPrimarySource", "source": "uo"}, {"relation_type": "prov:hadPrimarySource", "source": "stato"}, {"relation_type": "prov:hadPrimarySource", "source": "obi"}], "product_file_size": 642902930, "product_url": "https://orkg.org/files/rdf-dumps/rdf-export-orkg.nt"}, {"category": "GraphicalInterface", "description": "FORUM web application interface for semantic metabolomics exploration", "id": "forum.webapp", "name": "FORUM Web Application", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "forum"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmed"}], "product_url": "https://forum-webapp.semantic-metabolomics.fr/"}, {"category": "ProgrammingInterface", "description": "FORUM REST API for programmatic access to chemical-disease associations", "id": "forum.api", "name": "FORUM API", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "forum"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmed"}], "product_url": "https://forum-webapp.semantic-metabolomics.fr/#/openapi-documentation"}, {"category": "DocumentationProduct", "description": "FORUM VoID (Vocabulary of Interlinked Datasets) metadata describing the knowledge graph structure", "id": "forum.void", "name": "FORUM VoID Metadata", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "forum"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmed"}], "product_file_size": 96461, "product_url": "https://forum.semantic-metabolomics.fr/.well-known/void"}, {"category": "GraphicalInterface", "description": "Graphical interface for MedKG", "id": "medkb.site", "name": "MedKG Site", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "medkg"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "ttd"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "snomedct"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmed"}], "product_url": "http://pitools.niper.ac.in/medkg/", "secondary_source": [{"relation_type": "prov:wasInfluencedBy", "source": "medkg"}]}, {"category": "ProcessProduct", "description": "Source data directory used for SuppKG in the SemRep_DS repository.", "format": "http", "id": "suppkg.source-data", "name": "SuppKG Source Data Repository", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "suppkg"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmed"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}], "product_url": "https://github.com/zhang-informatics/SemRep_DS/tree/main/SuppKG"}, {"category": "MappingProduct", "description": "Mapping file linking CAS Registry Numbers to MeSH identifiers", "format": "csv", "id": "tera.cas-to-mesh-csv", "name": "CAS to MeSH Mapping (CSV)", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "tera"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}], "product_file_size": 109400, "product_url": "https://zenodo.org/records/4244313/files/cas_to_mesh.csv"}, {"category": "GraphProduct", "compression": "gzip", "description": "PharMeBINet V2 JSON release published on February 6, 2024.", "format": "json", "id": "pharmebinet.json", "latest_version": "v2", "name": "PharMeBINet JSON Release", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 1942958027, "product_url": "https://zenodo.org/api/records/17814889/files/pharmebinet_24_02_06.json.gz/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "compression": "zip", "description": "PharMeBINet V2 TSV release published on February 6, 2024.", "format": "tsv", "id": "pharmebinet.tsv", "latest_version": "v2", "name": "PharMeBINet TSV Release", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 1922614551, "product_url": "https://zenodo.org/api/records/17814889/files/pharmebinet_tsv_24_02_06.zip/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "compression": "zip", "description": "PharMeBINet V2 GraphML release published on February 6, 2024.", "format": "mixed", "id": "pharmebinet.graphml", "latest_version": "v2", "name": "PharMeBINet GraphML Release", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 2027519087, "product_url": "https://zenodo.org/api/records/17814889/files/PharMeBiNet_graphml_24_02_06.zip/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "compression": "zip", "description": "PharMeBINet V2 Neo4j database release published on February 6, 2024.", "format": "neo4j", "id": "pharmebinet.neo4j", "latest_version": "v2", "name": "PharMeBINet Neo4j Database", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 3847978577, "product_url": "https://zenodo.org/api/records/17814889/files/pharmebinet_24_02_06.zip/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "compression": "zip", "description": "PharMeBINet V2 Neo4j dump release published on February 6, 2024.", "dump_format": "neo4j", "format": "neo4j", "id": "pharmebinet.neo4j.dump", "latest_version": "v2", "name": "PharMeBINet Neo4j Dump", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 3598325722, "product_url": "https://zenodo.org/api/records/17814889/files/pharmebinet_dump_24_02_06.zip/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphicalInterface", "description": "MediaDive web portal for browsing, searching, comparing, and building microbial cultivation media recipes.", "format": "http", "id": "mediadive.portal", "name": "MediaDive Web Portal", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "mediadive"}], "product_url": "https://mediadive.dsmz.de/", "secondary_source": [{"relation_type": "prov:wasInformedBy", "source": "bacdive"}, {"relation_type": "prov:used", "source": "chebi"}, {"relation_type": "prov:used", "source": "ncbitaxon"}]}, {"category": "ProgrammingInterface", "description": "MediaDive REST API documentation for programmatic retrieval of media, solutions, ingredients, strains, and related records.", "format": "http", "id": "mediadive.rest_api", "name": "MediaDive REST API", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "mediadive"}], "product_url": "https://mediadive.dsmz.de/doc/index.html", "secondary_source": [{"relation_type": "prov:wasInformedBy", "source": "bacdive"}, {"relation_type": "prov:used", "source": "chebi"}, {"relation_type": "prov:used", "source": "ncbitaxon"}]}, {"category": "ProgrammingInterface", "description": "MediaDive SPARQL endpoint for querying the DSMZ Digital Diversity RDF representation of MediaDive data.", "format": "http", "id": "mediadive.sparql", "name": "MediaDive SPARQL Endpoint", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "mediadive"}], "product_url": "https://sparql.dsmz.de/mediadive", "secondary_source": [{"relation_type": "prov:wasInformedBy", "source": "bacdive"}, {"relation_type": "prov:used", "source": "chebi"}, {"relation_type": "prov:used", "source": "ncbitaxon"}]}, {"category": "Product", "compression": "gzip", "description": "PC v14 integrated BioPAX Level 3 unified model containing normalized pathway data, molecular interactions, cross-database entity mappings, and metadata-derived content from 26 datasource rows.", "format": "biopax", "id": "pathwaycommons.biopax", "name": "Integrated BioPAX Model", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_file_size": 1700903742, "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/pc-biopax.owl.gz", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}, {"category": "GraphProduct", "description": "RDF knowledge graph materialized by the MetaBoKG workflow from public metabolomics repository outputs, GNPS molecular-networking jobs, annotation evidence, sample metadata, and environmental and taxonomic context. The repository documents generated per-job Turtle files under mapping/kg and loading into Virtuoso named graphs.", "id": "metabokg.graph", "latest_version": "arXiv v1 demonstration", "name": "MetaboKG RDF Graph", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "metabokg"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmed"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmedcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "gnps"}, {"relation_type": "prov:hadPrimarySource", "source": "massive"}, {"relation_type": "prov:hadPrimarySource", "source": "redu"}], "product_url": "https://github.com/HolobiomicsLab/MetaBoKG", "secondary_source": [{"relation_type": "prov:used", "source": "ms"}, {"relation_type": "prov:used", "source": "chebi"}, {"relation_type": "prov:used", "source": "ncbitaxon"}, {"relation_type": "prov:used", "source": "envo"}, {"relation_type": "prov:used", "source": "ncit"}, {"relation_type": "prov:used", "source": "uberon"}, {"relation_type": "prov:used", "source": "chmo"}, {"relation_type": "prov:used", "source": "sio"}, {"relation_type": "prov:used", "source": "prov-o"}, {"relation_type": "prov:used", "source": "dcat"}, {"relation_type": "prov:used", "source": "afo"}], "warnings": ["No static public graph release or hosted endpoint was available in the GitHub repository when curated on 2026-06-02; the repository documents local Turtle materialization and Virtuoso loading."]}, {"category": "DataModelProduct", "description": "Turtle schema files defining MetaBoKG classes, properties, and ReDU class hierarchies used by the generated knowledge graph.", "id": "metabokg.schema", "license": {"id": "https://www.apache.org/licenses/LICENSE-2.0", "label": "Apache License 2.0"}, "name": "MetaBoKG RDF Schema", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "metabokg"}], "product_url": "https://github.com/HolobiomicsLab/MetaBoKG/tree/main/Schema", "secondary_source": [{"relation_type": "prov:wasInformedBy", "source": "ms"}, {"relation_type": "prov:wasInformedBy", "source": "chebi"}, {"relation_type": "prov:wasInformedBy", "source": "ncbitaxon"}, {"relation_type": "prov:wasInformedBy", "source": "envo"}, {"relation_type": "prov:wasInformedBy", "source": "ncit"}, {"relation_type": "prov:wasInformedBy", "source": "uberon"}, {"relation_type": "prov:wasInformedBy", "source": "chmo"}, {"relation_type": "prov:wasInformedBy", "source": "sio"}, {"relation_type": "prov:wasInformedBy", "source": "prov-o"}, {"relation_type": "prov:wasInformedBy", "source": "dcat"}, {"relation_type": "prov:wasInformedBy", "source": "afo"}]}, {"category": "Product", "description": "Download directory for Pathway Commons PC v14 integrated pathway and molecular interaction datasets, including BioPAX, SIF, GMT, TXT, and JSON-LD products.", "format": "mixed", "id": "pathwaycommons.downloads", "name": "Pathway Commons Data Downloads", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}, {"category": "Product", "compression": "gzip", "description": "PC v14 Simple Interaction Format network file representing binary pairwise molecular relationships integrated from Pathway Commons upstream datasource rows.", "format": "sif", "id": "pathwaycommons.sif", "name": "SIF Network Format", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_file_size": 9810179, "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/pc-hgnc.sif.gz", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}, {"category": "Product", "compression": "gzip", "description": "PC v14 Gene Matrix Transposed gene sets for pathway enrichment analysis, derived from the integrated Pathway Commons pathway archive.", "id": "pathwaycommons.gmt", "name": "GMT Gene Set Format", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_file_size": 262513, "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/pc-hgnc.gmt.gz", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}, {"category": "Product", "compression": "gzip", "description": "PC v14 tab-delimited extended SIF node and edge file using HGNC-oriented identifiers for integrated Pathway Commons interactions.", "format": "txt", "id": "pathwaycommons.txt", "name": "Extended SIF TXT Format", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_file_size": 115608500, "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/pc-hgnc.txt.gz", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}]
{"activity_status": "active", "category": "Ontology", "collection": ["obo-foundry"], "contacts": [{"category": "Individual", "contact_details": [{"contact_type": "email", "value": "amalik@ebi.ac.uk"}, {"contact_type": "github", "value": "amalik01"}], "label": "Adnan Malik", "orcid": "0000-0001-8123-5351"}], "creation_date": "2025-03-18T00:00:00Z", "description": "A structured classification of molecular entities of biological interest focusing on 'small' chemical compounds.", "domains": ["chemistry and biochemistry"], "homepage_url": "http://www.ebi.ac.uk/chebi", "id": "chebi", "infores_id": "chebi", "last_modified_date": "2026-04-15T00:00:00Z", "layout": "resource_detail", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC BY 4.0", "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png"}, "name": "Chemical Entities of Biological Interest", "products": [{"category": "OntologyProduct", "description": "Chemical Entities of Biological Interest in OWL format", "format": "owl", "id": "chebi.owl", "name": "chebi.owl", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chebi"}], "product_url": "http://purl.obolibrary.org/obo/chebi.owl"}, {"category": "OntologyProduct", "description": "Chemical Entities of Biological Interest in OBO format", "format": "obo", "id": "chebi.obo", "name": "chebi.obo", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chebi"}], "product_url": "http://purl.obolibrary.org/obo/chebi.obo"}, {"category": "OntologyProduct", "description": "Chemical Entities of Biological Interest in JSON format", "format": "json", "id": "chebi.json", "name": "chebi.json", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chebi"}], "product_file_size": 506456231, "product_url": "http://purl.obolibrary.org/obo/chebi.json"}, {"category": "OntologyProduct", "description": "chebi, compressed owl", "format": "owl", "id": "chebi.owl.gz", "name": "chebi, compressed owl", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chebi"}], "product_file_size": 62947851, "product_url": "http://purl.obolibrary.org/obo/chebi.owl.gz"}, {"category": "OntologyProduct", "description": "chebi_lite, no syns or xrefs", "format": "obo", "id": "chebi.chebi_lite.obo", "name": "chebi_lite, no syns or xrefs", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chebi"}], "product_url": "http://purl.obolibrary.org/obo/chebi/chebi_lite.obo"}, {"category": "OntologyProduct", "description": "chebi_core, no xrefs", "format": "obo", "id": "chebi.chebi_core.obo", "name": "chebi_core, no xrefs", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chebi"}], "product_url": "http://purl.obolibrary.org/obo/chebi/chebi_core.obo"}, {"category": "GraphProduct", "description": "Turnkey neo4j distributions that deploy fully-indexed, standalone UBKG instances as neo4j graph databases, running in a Docker container. Requires UMLS API key to access.", "dump_format": "neo4j", "id": "ubkg.neo4j", "name": "UBKG Neo4j Docker Distribution", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "4dn"}, {"relation_type": "prov:hadPrimarySource", "source": "biomarker"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "clingen"}, {"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "connectivitymap"}, {"relation_type": "prov:hadPrimarySource", "source": "dct"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "edam"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "erccrbp"}, {"relation_type": "prov:hadPrimarySource", "source": "erccreg"}, {"relation_type": "prov:hadPrimarySource", "source": "faldo"}, {"relation_type": "prov:hadPrimarySource", "source": "gencode"}, {"relation_type": "prov:hadPrimarySource", "source": "glycocoo"}, {"relation_type": "prov:hadPrimarySource", "source": "glycordf"}, {"relation_type": "prov:hadPrimarySource", "source": "gtex"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "hra"}, {"relation_type": "prov:hadPrimarySource", "source": "hsapdv"}, {"relation_type": "prov:hadPrimarySource", "source": "hubmap"}, {"relation_type": "prov:hadPrimarySource", "source": "icd10"}, {"relation_type": "prov:hadPrimarySource", "source": "kidsfirst"}, {"relation_type": "prov:hadPrimarySource", "source": "lincs"}, {"relation_type": "prov:hadPrimarySource", "source": "loinc"}, {"relation_type": "prov:hadPrimarySource", "source": "mi"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "motrpac"}, {"relation_type": "prov:hadPrimarySource", "source": "mp"}, {"relation_type": "prov:hadPrimarySource", "source": "msigdb"}, {"relation_type": "prov:hadPrimarySource", "source": "mw"}, {"relation_type": "prov:hadPrimarySource", "source": "npo"}, {"relation_type": "prov:hadPrimarySource", "source": "obi"}, {"relation_type": "prov:hadPrimarySource", "source": "obib"}, {"relation_type": "prov:hadPrimarySource", "source": "opentargets"}, {"relation_type": "prov:hadPrimarySource", "source": "ordo"}, {"relation_type": "prov:hadPrimarySource", "source": "pato"}, {"relation_type": "prov:hadPrimarySource", "source": "pgo"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "sbo"}, {"relation_type": "prov:hadPrimarySource", "source": "sckan"}, {"relation_type": "prov:hadPrimarySource", "source": "sennet"}, {"relation_type": "prov:hadPrimarySource", "source": "snomedct"}, {"relation_type": "prov:hadPrimarySource", "source": "stellar"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "ubkg"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "uo"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}], "product_url": "https://ubkg-downloads.xconsortia.org/"}, {"category": "GraphProduct", "description": "Ontology CSV files that can be imported into a neo4j instance to create a UBKG database. Requires UMLS API key to access.", "format": "csv", "id": "ubkg.csv", "name": "UBKG Ontology CSV Files", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "4dn"}, {"relation_type": "prov:hadPrimarySource", "source": "biomarker"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "clingen"}, {"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "connectivitymap"}, {"relation_type": "prov:hadPrimarySource", "source": "dct"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "edam"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "erccrbp"}, {"relation_type": "prov:hadPrimarySource", "source": "erccreg"}, {"relation_type": "prov:hadPrimarySource", "source": "faldo"}, {"relation_type": "prov:hadPrimarySource", "source": "gencode"}, {"relation_type": "prov:hadPrimarySource", "source": "glycocoo"}, {"relation_type": "prov:hadPrimarySource", "source": "glycordf"}, {"relation_type": "prov:hadPrimarySource", "source": "gtex"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "hra"}, {"relation_type": "prov:hadPrimarySource", "source": "hsapdv"}, {"relation_type": "prov:hadPrimarySource", "source": "hubmap"}, {"relation_type": "prov:hadPrimarySource", "source": "icd10"}, {"relation_type": "prov:hadPrimarySource", "source": "kidsfirst"}, {"relation_type": "prov:hadPrimarySource", "source": "lincs"}, {"relation_type": "prov:hadPrimarySource", "source": "loinc"}, {"relation_type": "prov:hadPrimarySource", "source": "mi"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "motrpac"}, {"relation_type": "prov:hadPrimarySource", "source": "mp"}, {"relation_type": "prov:hadPrimarySource", "source": "msigdb"}, {"relation_type": "prov:hadPrimarySource", "source": "mw"}, {"relation_type": "prov:hadPrimarySource", "source": "npo"}, {"relation_type": "prov:hadPrimarySource", "source": "obi"}, {"relation_type": "prov:hadPrimarySource", "source": "obib"}, {"relation_type": "prov:hadPrimarySource", "source": "opentargets"}, {"relation_type": "prov:hadPrimarySource", "source": "ordo"}, {"relation_type": "prov:hadPrimarySource", "source": "pato"}, {"relation_type": "prov:hadPrimarySource", "source": "pgo"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "sbo"}, {"relation_type": "prov:hadPrimarySource", "source": "sckan"}, {"relation_type": "prov:hadPrimarySource", "source": "sennet"}, {"relation_type": "prov:hadPrimarySource", "source": "snomedct"}, {"relation_type": "prov:hadPrimarySource", "source": "stellar"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "ubkg"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "uo"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}], "product_url": "https://ubkg-downloads.xconsortia.org/"}, {"category": "Product", "description": "Network embeddings of the Bioteque graph that represent biological entities and their associations", "id": "bioteque.embeddings", "name": "Bioteque Embeddings", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "achilles"}, {"relation_type": "prov:hadPrimarySource", "source": "bioteque"}, {"relation_type": "prov:hadPrimarySource", "source": "bto"}, {"relation_type": "prov:hadPrimarySource", "source": "ccle"}, {"relation_type": "prov:hadPrimarySource", "source": "cellosaurus"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "chemicalchecker"}, {"relation_type": "prov:hadPrimarySource", "source": "clue"}, {"relation_type": "prov:hadPrimarySource", "source": "compartments"}, {"relation_type": "prov:hadPrimarySource", "source": "corum"}, {"relation_type": "prov:hadPrimarySource", "source": "cosmic"}, {"relation_type": "prov:hadPrimarySource", "source": "creeds"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "depmap"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "dorothea"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "drugcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "gdsc"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gtex"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "huri"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "lincs"}, {"relation_type": "prov:hadPrimarySource", "source": "offsides"}, {"relation_type": "prov:hadPrimarySource", "source": "omnipath"}, {"relation_type": "prov:hadPrimarySource", "source": "opentargets"}, {"relation_type": "prov:hadPrimarySource", "source": "pharmacodb"}, {"relation_type": "prov:hadPrimarySource", "source": "prism"}, {"relation_type": "prov:hadPrimarySource", "source": "progeny"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "repodb"}, {"relation_type": "prov:hadPrimarySource", "source": "repohub"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}], "product_url": "https://bioteque.irbbarcelona.org/downloads/embeddings"}, {"category": "GraphProduct", "compression": "targz", "description": "Raw source files for all KG-Microbe framework transforms (all 4 KGs)", "format": "kgx", "id": "kg-microbe.graph.raw", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0 1.0"}, "name": "KG-Microbe KGX Graph - Raw", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bacdive"}, {"relation_type": "prov:hadPrimarySource", "source": "bactotraits"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "disbiome"}, {"relation_type": "prov:hadPrimarySource", "source": "ec"}, {"relation_type": "prov:hadPrimarySource", "source": "envo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-microbe"}, {"relation_type": "prov:hadPrimarySource", "source": "mediadive"}, {"relation_type": "prov:hadPrimarySource", "source": "metpo"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "rhea"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}], "product_file_size": 12464495186, "product_url": "https://portal.nersc.gov/project/m4689/KGMicrobe-raw-20250222.tar.gz"}, {"category": "GraphProduct", "compression": "targz", "description": "The core KG KG-Microbe-Core with ontologies, organismal traits, and growth preferences.", "format": "kgx", "id": "kg-microbe.graph.core", "name": "KG-Microbe KGX Graph - Core", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bacdive"}, {"relation_type": "prov:hadPrimarySource", "source": "bactotraits"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "disbiome"}, {"relation_type": "prov:hadPrimarySource", "source": "ec"}, {"relation_type": "prov:hadPrimarySource", "source": "envo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-microbe"}, {"relation_type": "prov:hadPrimarySource", "source": "mediadive"}, {"relation_type": "prov:hadPrimarySource", "source": "metpo"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "rhea"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}], "product_url": "https://github.com/Knowledge-Graph-Hub/kg-microbe/releases/latest"}, {"category": "GraphProduct", "compression": "targz", "description": "Core plus human biomedical data (ontologies, CTD, Wallen et al)", "format": "kgx", "id": "kg-microbe.graph.biomedical", "name": "KG-Microbe KGX Graph - Biomedical", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bacdive"}, {"relation_type": "prov:hadPrimarySource", "source": "bactotraits"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "disbiome"}, {"relation_type": "prov:hadPrimarySource", "source": "ec"}, {"relation_type": "prov:hadPrimarySource", "source": "envo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-microbe"}, {"relation_type": "prov:hadPrimarySource", "source": "mediadive"}, {"relation_type": "prov:hadPrimarySource", "source": "metpo"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "rhea"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}], "product_url": "https://github.com/Knowledge-Graph-Hub/kg-microbe/releases/latest"}, {"category": "GraphProduct", "compression": "targz", "description": "Core plus Uniprot genome annotations", "format": "kgx", "id": "kg-microbe.graph.function", "name": "KG-Microbe KGX Graph - Function", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bacdive"}, {"relation_type": "prov:hadPrimarySource", "source": "bactotraits"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "disbiome"}, {"relation_type": "prov:hadPrimarySource", "source": "ec"}, {"relation_type": "prov:hadPrimarySource", "source": "envo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-microbe"}, {"relation_type": "prov:hadPrimarySource", "source": "mediadive"}, {"relation_type": "prov:hadPrimarySource", "source": "metpo"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "rhea"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}], "product_file_size": 4623010863, "product_url": "https://portal.nersc.gov/project/m4689/KGMicrobe-function-20250222.tar.gz"}, {"category": "GraphProduct", "compression": "targz", "description": "Biomedical plus Uniprot genome annotations", "format": "kgx", "id": "kg-microbe.graph.biomedical-function", "name": "KG-Microbe KGX Graph - Biomedical-Function", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bacdive"}, {"relation_type": "prov:hadPrimarySource", "source": "bactotraits"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "disbiome"}, {"relation_type": "prov:hadPrimarySource", "source": "ec"}, {"relation_type": "prov:hadPrimarySource", "source": "envo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-microbe"}, {"relation_type": "prov:hadPrimarySource", "source": "mediadive"}, {"relation_type": "prov:hadPrimarySource", "source": "metpo"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "rhea"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}], "product_file_size": 4640682152, "product_url": "https://portal.nersc.gov/project/m4689/KGMicrobe-biomedical-function-20250222.tar.gz"}, {"category": "GraphProduct", "description": "Core UniBioMap graph edges file.", "format": "csv", "id": "unibiomap.links", "name": "UniBioMap Graph Links", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "unibiomap"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "bindingdb"}, {"relation_type": "prov:hadPrimarySource", "source": "foodb"}, {"relation_type": "prov:hadPrimarySource", "source": "tcdb"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "stitch"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "unichem"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "batman"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "compath"}, {"relation_type": "prov:hadPrimarySource", "source": "phosphositeplus"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "smpdb"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "medgen"}, {"relation_type": "prov:hadPrimarySource", "source": "umls"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "inchikey"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}], "product_file_size": 1406201678, "product_url": "https://aideepmed.com/UniBioMap/database/unibiomap/unibiomap.links.csv"}, {"category": "GraphProduct", "description": "Auxiliary UniBioMap graph annotations and metadata.", "format": "tsv", "id": "unibiomap.auxs", "name": "UniBioMap Graph Auxiliaries", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "unibiomap"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "bindingdb"}, {"relation_type": "prov:hadPrimarySource", "source": "foodb"}, {"relation_type": "prov:hadPrimarySource", "source": "tcdb"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "stitch"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "unichem"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "batman"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "compath"}, {"relation_type": "prov:hadPrimarySource", "source": "phosphositeplus"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "smpdb"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "medgen"}, {"relation_type": "prov:hadPrimarySource", "source": "umls"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "inchikey"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}], "product_file_size": 591290539, "product_url": "https://aideepmed.com/UniBioMap/database/unibiomap/unibiomap.auxs.tsv"}, {"category": "GraphProduct", "description": "Predicted UniBioMap graph edges with confidence scores.", "format": "csv", "id": "unibiomap.pred", "name": "UniBioMap Predicted Graph", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "unibiomap"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "bindingdb"}, {"relation_type": "prov:hadPrimarySource", "source": "foodb"}, {"relation_type": "prov:hadPrimarySource", "source": "tcdb"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "stitch"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "unichem"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "batman"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "compath"}, {"relation_type": "prov:hadPrimarySource", "source": "phosphositeplus"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "smpdb"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "medgen"}, {"relation_type": "prov:hadPrimarySource", "source": "umls"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "inchikey"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}], "product_file_size": 2484982268, "product_url": "https://aideepmed.com/UniBioMap/database/unibiomap/unibiomap.pred.csv"}, {"category": "GraphProduct", "description": "Full unfiltered UniBioMap predicted graph edges file.", "format": "csv", "id": "unibiomap.pred.full", "name": "UniBioMap Predicted Graph (Full)", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "unibiomap"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "bindingdb"}, {"relation_type": "prov:hadPrimarySource", "source": "foodb"}, {"relation_type": "prov:hadPrimarySource", "source": "tcdb"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "stitch"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "unichem"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "batman"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "compath"}, {"relation_type": "prov:hadPrimarySource", "source": "phosphositeplus"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "smpdb"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "medgen"}, {"relation_type": "prov:hadPrimarySource", "source": "umls"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "inchikey"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}], "product_file_size": 6303875907, "product_url": "https://aideepmed.com/UniBioMap/database/unibiomap/unibiomap.pred.full.csv"}, {"category": "GraphProduct", "description": "The integrative Biomedical Knowledge Hub (iBKH) knowledge graph, harmonizing and integrating information from diverse biomedical resources including DRKG, iDISK, and multiple databases (BRENDA, CTD, DrugBank, KEGG, PharmGKB, Reactome, SIDER, and others).", "id": "ibkh.graph", "name": "iBKH Knowledge Graph", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "brenda"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "drkg"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "ibkh"}, {"relation_type": "prov:hadPrimarySource", "source": "idisk"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "pharmgkb"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}]}, {"category": "MappingProduct", "description": "bigg.metabolite SSSOM", "format": "sssom", "id": "obo-db-ingest.bigg.metabolite.sssom.tsv", "license": {"id": "http://bigg.ucsd.edu/license#license", "label": "Custom"}, "name": "bigg.metabolite SSSOM", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bigg"}, {"relation_type": "prov:hadPrimarySource", "source": "biocyc"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "obo-db-ingest"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}], "product_file_size": 400516, "product_url": "https://w3id.org/biopragmatics/resources/bigg.metabolite/bigg.metabolite.sssom.tsv"}, {"description": "The MechRepoNet knowledge graph in its original format", "id": "mechreponet.kg", "name": "MechRepoNet Knowledge Graph", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "biolink"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "complexportal"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hetionet"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "mechreponet"}, {"relation_type": "prov:hadPrimarySource", "source": "mirtarbase"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "pr"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "rnacentral"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "unii"}], "product_url": "https://github.com/SuLab/MechRepoNet/releases/tag/publication"}, {"category": "ProgrammingInterface", "description": "Plover-hosted TRAPI web API for querying the Multiomics Microbiome knowledge graph", "format": "http", "id": "microbiomekg.api", "is_public": true, "name": "MicrobiomeKG Plover TRAPI API", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "biolink"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "eupathdb"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "microbiomekg"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "ncit"}, {"relation_type": "prov:hadPrimarySource", "source": "panther"}, {"relation_type": "prov:hadPrimarySource", "source": "pr"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "rhea"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}], "product_url": "https://multiomics.transltr.io/mbkp"}, {"category": "GraphProduct", "description": "PheKnowLator graph files, including subsets with and without inverse relations.", "format": "owl", "id": "pheknowlator.graph", "latest_version": "current_build", "name": "PheKnowLator graph", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bioportal"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "clo"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "genemania"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "medgen"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "pheknowlator"}, {"relation_type": "prov:hadPrimarySource", "source": "pr"}, {"relation_type": "prov:hadPrimarySource", "source": "pw"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "ro"}, {"relation_type": "prov:hadPrimarySource", "source": "so"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "vo"}], "product_url": "https://console.cloud.google.com/storage/browser/pheknowlator/current_build/knowledge_graphs?pageState=(%22StorageObjectListTable%22:(%22f%22:%22%255B%255D%22))&inv=1&invt=Ab5_1Q&project=pheknowlator", "versions": ["v1.0.0", "v2.0.0", "v2.1.0", "v3.0.2", "v4.0.0", "current_build"]}, {"category": "GraphProduct", "description": "Nodes for KGX distribution of the RTX-KG2 (RTX-KG2.10.1c)", "format": "kgx-jsonl", "id": "rtx-kg2.graph.nodes", "name": "RTX-KG2.10.1c KGX JSONL Nodes", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "drugcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "dgidb"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "gtopdb"}, {"relation_type": "prov:hadPrimarySource", "source": "rtx-kg2"}, {"relation_type": "prov:hadPrimarySource", "source": "semmeddb"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "umls"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "smpdb"}], "product_file_size": 376501785, "product_url": "https://rtx-kg2-public.s3.us-west-2.amazonaws.com/kg2c-2.10.1-v1.0-nodes.jsonl.gz"}, {"category": "GraphProduct", "description": "Edges for KGX distribution of the RTX-KG2 (RTX-KG2.10.1c)", "format": "kgx-jsonl", "id": "rtx-kg2.graph.edges", "name": "RTX-KG2.10.1c KGX JSONL Edges", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "drugcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "dgidb"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "gtopdb"}, {"relation_type": "prov:hadPrimarySource", "source": "rtx-kg2"}, {"relation_type": "prov:hadPrimarySource", "source": "semmeddb"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "umls"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "smpdb"}], "product_file_size": 1807360397, "product_url": "https://rtx-kg2-public.s3.us-west-2.amazonaws.com/kg2c-2.10.1-v1.0-edges.jsonl.gz"}, {"category": "ProgrammingInterface", "description": "Neo4j distribution of the RTX-KG2 as a graph database", "dump_format": "neo4j", "id": "rtx-kg2.neo4j", "is_neo4j": true, "is_public": false, "name": "RTX-KG2 Neo4j", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "drugcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "dgidb"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "gtopdb"}, {"relation_type": "prov:hadPrimarySource", "source": "rtx-kg2"}, {"relation_type": "prov:hadPrimarySource", "source": "semmeddb"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "umls"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "smpdb"}], "product_url": "https://arax.ncats.io/"}, {"category": "GraphProduct", "description": "KGX distribution of the ICEES Exposures KP in Knowledge Graph Exchange (KGX) format, containing integrated clinical and environmental exposures data as a knowledge graph with 226 nodes and 14,342 edges", "format": "kgx-jsonl", "id": "icees-kg.graph", "name": "KGX distribution of the ICEES Exposures KP", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "umls"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "icees-kg"}], "product_url": "https://stars.renci.org/var/plater/bl-4.2.1/icees-kg/1.5.0/"}, {"category": "ProgrammingInterface", "description": "Translator Reasoner API (TRAPI) endpoint for querying ICEES KG using standardized Translator protocols", "format": "http", "id": "icees-kg.trapi", "name": "ICEES KG TRAPI API", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "umls"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "icees-kg"}, {"relation_type": "prov:hadPrimarySource", "source": "translator"}], "product_url": "https://robokop.renci.org/api-docs/docs/automat/icees-kg-trapi"}, {"category": "Product", "description": "Meta knowledge graph and metadata describing the data sources, node types, edge types, and predicates available in ICEES KG", "format": "json", "id": "icees-kg.metadata", "name": "ICEES KG Metadata", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "umls"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "icees-kg"}, {"relation_type": "prov:hadPrimarySource", "source": "translator"}], "product_url": "https://robokop.renci.org/api-docs/docs/automat/metadata-metadata-get-icees-kg"}, {"category": "GraphProduct", "description": "Downloadable knowledge graph dump in TAR/GZ format containing complete FORUM data", "id": "forum.graph.dump", "name": "FORUM Knowledge Graph Dump", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "cheminf"}, {"relation_type": "prov:hadPrimarySource", "source": "chemont"}, {"relation_type": "prov:hadPrimarySource", "source": "cito"}, {"relation_type": "prov:hadPrimarySource", "source": "dc"}, {"relation_type": "prov:hadPrimarySource", "source": "fabio"}, {"relation_type": "prov:hadPrimarySource", "source": "forum"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmed"}, {"relation_type": "prov:hadPrimarySource", "source": "skos"}], "product_url": "ftp://forum:Forum2021Cov!@ftp.semantic-metabolomics.org/dumps/2021/share.tar.gz", "warnings": ["File was not able to be retrieved when checked on 2026-06-05: FTP error: timed out", "File was not able to be retrieved when checked on 2026-03-30_ FTP error_ timed out"]}, {"category": "GraphProduct", "description": "RNA-KG as a Neo4j Dump", "format": "neo4j", "id": "rna-kg.kg.neo4j", "name": "RNA-KG Neo4j Dump", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "circbase"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "cosmic"}, {"relation_type": "prov:hadPrimarySource", "source": "dbsnp"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "pr"}, {"relation_type": "prov:hadPrimarySource", "source": "pw"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "rna-kg"}, {"relation_type": "prov:hadPrimarySource", "source": "rnacentral"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "vo"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}], "product_file_size": 3976840239, "product_url": "https://rna-kg.biodata.di.unimi.it/rnakgv20.dump"}, {"category": "GraphProduct", "description": "RNA-KG Nodes in CSV format", "format": "csv", "id": "rna-kg.kg.nodes", "name": "RNA-KG Nodes", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "circbase"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "cosmic"}, {"relation_type": "prov:hadPrimarySource", "source": "dbsnp"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "pr"}, {"relation_type": "prov:hadPrimarySource", "source": "pw"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "rna-kg"}, {"relation_type": "prov:hadPrimarySource", "source": "rnacentral"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "vo"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}], "product_file_size": 4424633304, "product_url": "https://rna-kg.biodata.di.unimi.it/nodes.csv"}, {"category": "GraphProduct", "description": "RNA-KG Edges in CSV format", "format": "csv", "id": "rna-kg.kg.edges", "name": "RNA-KG Edges", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "circbase"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "cosmic"}, {"relation_type": "prov:hadPrimarySource", "source": "dbsnp"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "pr"}, {"relation_type": "prov:hadPrimarySource", "source": "pw"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "rna-kg"}, {"relation_type": "prov:hadPrimarySource", "source": "rnacentral"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "vo"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}], "product_file_size": 18370248815, "product_url": "https://rna-kg.biodata.di.unimi.it/edges.csv"}, {"category": "OntologyProduct", "description": "The latest release of EFO in OWL format", "format": "owl", "id": "efo.owl", "name": "EFO OWL", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bfo"}, {"relation_type": "prov:hadPrimarySource", "source": "bto"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "clo"}, {"relation_type": "prov:hadPrimarySource", "source": "cob"}, {"relation_type": "prov:hadPrimarySource", "source": "dc"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "ecto"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "fbbt"}, {"relation_type": "prov:hadPrimarySource", "source": "fbdv"}, {"relation_type": "prov:hadPrimarySource", "source": "fma"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hancestro"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "iao"}, {"relation_type": "prov:hadPrimarySource", "source": "ido"}, {"relation_type": "prov:hadPrimarySource", "source": "ma"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "mp"}, {"relation_type": "prov:hadPrimarySource", "source": "mpath"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "ncit"}, {"relation_type": "prov:hadPrimarySource", "source": "oba"}, {"relation_type": "prov:hadPrimarySource", "source": "obi"}, {"relation_type": "prov:hadPrimarySource", "source": "ogms"}, {"relation_type": "prov:hadPrimarySource", "source": "oio"}, {"relation_type": "prov:hadPrimarySource", "source": "omit"}, {"relation_type": "prov:hadPrimarySource", "source": "omo"}, {"relation_type": "prov:hadPrimarySource", "source": "ordo"}, {"relation_type": "prov:hadPrimarySource", "source": "pato"}, {"relation_type": "prov:hadPrimarySource", "source": "po"}, {"relation_type": "prov:hadPrimarySource", "source": "pr"}, {"relation_type": "prov:hadPrimarySource", "source": "ro"}, {"relation_type": "prov:hadPrimarySource", "source": "semapv"}, {"relation_type": "prov:hadPrimarySource", "source": "skos"}, {"relation_type": "prov:hadPrimarySource", "source": "so"}, {"relation_type": "prov:hadPrimarySource", "source": "to"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "uo"}, {"relation_type": "prov:hadPrimarySource", "source": "wbls"}, {"relation_type": "prov:hadPrimarySource", "source": "zfa"}], "product_file_size": 240665663, "product_url": "https://www.ebi.ac.uk/efo/efo.owl"}, {"category": "OntologyProduct", "description": "The latest release of EFO in OBO format", "format": "obo", "id": "efo.obo", "name": "EFO OBO", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bfo"}, {"relation_type": "prov:hadPrimarySource", "source": "bto"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "clo"}, {"relation_type": "prov:hadPrimarySource", "source": "cob"}, {"relation_type": "prov:hadPrimarySource", "source": "dc"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "ecto"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "fbbt"}, {"relation_type": "prov:hadPrimarySource", "source": "fbdv"}, {"relation_type": "prov:hadPrimarySource", "source": "fma"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hancestro"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "iao"}, {"relation_type": "prov:hadPrimarySource", "source": "ido"}, {"relation_type": "prov:hadPrimarySource", "source": "ma"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "mp"}, {"relation_type": "prov:hadPrimarySource", "source": "mpath"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "ncit"}, {"relation_type": "prov:hadPrimarySource", "source": "oba"}, {"relation_type": "prov:hadPrimarySource", "source": "obi"}, {"relation_type": "prov:hadPrimarySource", "source": "ogms"}, {"relation_type": "prov:hadPrimarySource", "source": "oio"}, {"relation_type": "prov:hadPrimarySource", "source": "omit"}, {"relation_type": "prov:hadPrimarySource", "source": "omo"}, {"relation_type": "prov:hadPrimarySource", "source": "ordo"}, {"relation_type": "prov:hadPrimarySource", "source": "pato"}, {"relation_type": "prov:hadPrimarySource", "source": "po"}, {"relation_type": "prov:hadPrimarySource", "source": "pr"}, {"relation_type": "prov:hadPrimarySource", "source": "ro"}, {"relation_type": "prov:hadPrimarySource", "source": "semapv"}, {"relation_type": "prov:hadPrimarySource", "source": "skos"}, {"relation_type": "prov:hadPrimarySource", "source": "so"}, {"relation_type": "prov:hadPrimarySource", "source": "to"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "uo"}, {"relation_type": "prov:hadPrimarySource", "source": "wbls"}, {"relation_type": "prov:hadPrimarySource", "source": "zfa"}], "product_file_size": 64058275, "product_url": "https://www.ebi.ac.uk/efo/efo.obo"}, {"category": "GraphProduct", "description": "Nodes for the Drug Approvals KP, v0.3.9", "format": "kgx", "id": "drug-approvals-kp.graph.nodes", "name": "Drug Approvals KP Graph Nodes", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "drug-approvals-kp"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}], "product_file_size": 701451, "product_url": "https://db.systemsbiology.net/gestalt/KG/drug_approvals_kg_nodes_v0.3.9.tsv"}, {"category": "GraphProduct", "description": "Edges for the Drug Approvals KP, v0.3.9", "format": "kgx", "id": "drug-approvals-kp.graph.edges", "name": "Drug Approvals KP Graph Edges", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "drug-approvals-kp"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}], "product_file_size": 31052966, "product_url": "https://db.systemsbiology.net/gestalt/KG/drug_approvals_kg_edges_v0.3.9.tsv"}, {"category": "GraphProduct", "compatibility": [{"standard": "biolink"}], "compression": "zip", "description": "Curated mechanistic drug\u2013disease paths comprising the DrugMechDB dataset packaged as a downloadable archive.", "dump_format": "other", "format": "mixed", "id": "drugmechdb.graph", "latest_version": "2.0.1", "name": "DrugMechDB Graph Dataset", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "drugmechdb"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "pr"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}], "product_url": "https://doi.org/10.5281/zenodo.8139357", "repository": "https://github.com/SuLab/DrugMechDB", "versions": ["2.0.1", "2.0.0", "1.0.2", "1.0"]}, {"category": "GraphProduct", "description": "RDF dump of the Open Research Knowledge Graph distributed in N-Triples format.", "format": "ntriples", "id": "orkg.dump", "name": "ORKG RDF Dump", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "orkg"}, {"relation_type": "prov:hadPrimarySource", "source": "wikidata"}, {"relation_type": "prov:hadPrimarySource", "source": "geonames"}, {"relation_type": "prov:hadPrimarySource", "source": "ncit"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "clo"}, {"relation_type": "prov:hadPrimarySource", "source": "omit"}, {"relation_type": "prov:hadPrimarySource", "source": "iao"}, {"relation_type": "prov:hadPrimarySource", "source": "uo"}, {"relation_type": "prov:hadPrimarySource", "source": "stato"}, {"relation_type": "prov:hadPrimarySource", "source": "obi"}], "product_file_size": 642902930, "product_url": "https://orkg.org/files/rdf-dumps/rdf-export-orkg.nt"}, {"category": "GraphicalInterface", "description": "FORUM web application interface for semantic metabolomics exploration", "id": "forum.webapp", "name": "FORUM Web Application", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "forum"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmed"}], "product_url": "https://forum-webapp.semantic-metabolomics.fr/"}, {"category": "ProgrammingInterface", "description": "FORUM REST API for programmatic access to chemical-disease associations", "id": "forum.api", "name": "FORUM API", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "forum"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmed"}], "product_url": "https://forum-webapp.semantic-metabolomics.fr/#/openapi-documentation"}, {"category": "DocumentationProduct", "description": "FORUM VoID (Vocabulary of Interlinked Datasets) metadata describing the knowledge graph structure", "id": "forum.void", "name": "FORUM VoID Metadata", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "forum"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmed"}], "product_file_size": 96461, "product_url": "https://forum.semantic-metabolomics.fr/.well-known/void"}, {"category": "GraphicalInterface", "description": "Graphical interface for MedKG", "id": "medkb.site", "name": "MedKG Site", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "medkg"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "ttd"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "snomedct"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmed"}], "product_url": "http://pitools.niper.ac.in/medkg/", "secondary_source": [{"relation_type": "prov:wasInfluencedBy", "source": "medkg"}]}, {"category": "ProcessProduct", "description": "Source data directory used for SuppKG in the SemRep_DS repository.", "format": "http", "id": "suppkg.source-data", "name": "SuppKG Source Data Repository", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "suppkg"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmed"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}], "product_url": "https://github.com/zhang-informatics/SemRep_DS/tree/main/SuppKG"}, {"category": "MappingProduct", "description": "Mapping file linking CAS Registry Numbers to MeSH identifiers", "format": "csv", "id": "tera.cas-to-mesh-csv", "name": "CAS to MeSH Mapping (CSV)", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "tera"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}], "product_file_size": 109400, "product_url": "https://zenodo.org/records/4244313/files/cas_to_mesh.csv"}, {"category": "GraphProduct", "compression": "gzip", "description": "PharMeBINet V2 JSON release published on February 6, 2024.", "format": "json", "id": "pharmebinet.json", "latest_version": "v2", "name": "PharMeBINet JSON Release", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 1942958027, "product_url": "https://zenodo.org/api/records/17814889/files/pharmebinet_24_02_06.json.gz/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "compression": "zip", "description": "PharMeBINet V2 TSV release published on February 6, 2024.", "format": "tsv", "id": "pharmebinet.tsv", "latest_version": "v2", "name": "PharMeBINet TSV Release", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 1922614551, "product_url": "https://zenodo.org/api/records/17814889/files/pharmebinet_tsv_24_02_06.zip/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "compression": "zip", "description": "PharMeBINet V2 GraphML release published on February 6, 2024.", "format": "mixed", "id": "pharmebinet.graphml", "latest_version": "v2", "name": "PharMeBINet GraphML Release", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 2027519087, "product_url": "https://zenodo.org/api/records/17814889/files/PharMeBiNet_graphml_24_02_06.zip/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "compression": "zip", "description": "PharMeBINet V2 Neo4j database release published on February 6, 2024.", "format": "neo4j", "id": "pharmebinet.neo4j", "latest_version": "v2", "name": "PharMeBINet Neo4j Database", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 3847978577, "product_url": "https://zenodo.org/api/records/17814889/files/pharmebinet_24_02_06.zip/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "compression": "zip", "description": "PharMeBINet V2 Neo4j dump release published on February 6, 2024.", "dump_format": "neo4j", "format": "neo4j", "id": "pharmebinet.neo4j.dump", "latest_version": "v2", "name": "PharMeBINet Neo4j Dump", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 3598325722, "product_url": "https://zenodo.org/api/records/17814889/files/pharmebinet_dump_24_02_06.zip/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphicalInterface", "description": "MediaDive web portal for browsing, searching, comparing, and building microbial cultivation media recipes.", "format": "http", "id": "mediadive.portal", "name": "MediaDive Web Portal", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "mediadive"}], "product_url": "https://mediadive.dsmz.de/", "secondary_source": [{"relation_type": "prov:wasInformedBy", "source": "bacdive"}, {"relation_type": "prov:used", "source": "chebi"}, {"relation_type": "prov:used", "source": "ncbitaxon"}]}, {"category": "ProgrammingInterface", "description": "MediaDive REST API documentation for programmatic retrieval of media, solutions, ingredients, strains, and related records.", "format": "http", "id": "mediadive.rest_api", "name": "MediaDive REST API", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "mediadive"}], "product_url": "https://mediadive.dsmz.de/doc/index.html", "secondary_source": [{"relation_type": "prov:wasInformedBy", "source": "bacdive"}, {"relation_type": "prov:used", "source": "chebi"}, {"relation_type": "prov:used", "source": "ncbitaxon"}]}, {"category": "ProgrammingInterface", "description": "MediaDive SPARQL endpoint for querying the DSMZ Digital Diversity RDF representation of MediaDive data.", "format": "http", "id": "mediadive.sparql", "name": "MediaDive SPARQL Endpoint", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "mediadive"}], "product_url": "https://sparql.dsmz.de/mediadive", "secondary_source": [{"relation_type": "prov:wasInformedBy", "source": "bacdive"}, {"relation_type": "prov:used", "source": "chebi"}, {"relation_type": "prov:used", "source": "ncbitaxon"}]}, {"category": "Product", "compression": "gzip", "description": "PC v14 integrated BioPAX Level 3 unified model containing normalized pathway data, molecular interactions, cross-database entity mappings, and metadata-derived content from 26 datasource rows.", "format": "biopax", "id": "pathwaycommons.biopax", "name": "Integrated BioPAX Model", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_file_size": 1700903742, "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/pc-biopax.owl.gz", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}, {"category": "GraphProduct", "description": "RDF knowledge graph materialized by the MetaBoKG workflow from public metabolomics repository outputs, GNPS molecular-networking jobs, annotation evidence, sample metadata, and environmental and taxonomic context. The repository documents generated per-job Turtle files under mapping/kg and loading into Virtuoso named graphs.", "id": "metabokg.graph", "latest_version": "arXiv v1 demonstration", "name": "MetaboKG RDF Graph", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "metabokg"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmed"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmedcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "gnps"}, {"relation_type": "prov:hadPrimarySource", "source": "massive"}, {"relation_type": "prov:hadPrimarySource", "source": "redu"}], "product_url": "https://github.com/HolobiomicsLab/MetaBoKG", "secondary_source": [{"relation_type": "prov:used", "source": "ms"}, {"relation_type": "prov:used", "source": "chebi"}, {"relation_type": "prov:used", "source": "ncbitaxon"}, {"relation_type": "prov:used", "source": "envo"}, {"relation_type": "prov:used", "source": "ncit"}, {"relation_type": "prov:used", "source": "uberon"}, {"relation_type": "prov:used", "source": "chmo"}, {"relation_type": "prov:used", "source": "sio"}, {"relation_type": "prov:used", "source": "prov-o"}, {"relation_type": "prov:used", "source": "dcat"}, {"relation_type": "prov:used", "source": "afo"}], "warnings": ["No static public graph release or hosted endpoint was available in the GitHub repository when curated on 2026-06-02; the repository documents local Turtle materialization and Virtuoso loading."]}, {"category": "DataModelProduct", "description": "Turtle schema files defining MetaBoKG classes, properties, and ReDU class hierarchies used by the generated knowledge graph.", "id": "metabokg.schema", "license": {"id": "https://www.apache.org/licenses/LICENSE-2.0", "label": "Apache License 2.0"}, "name": "MetaBoKG RDF Schema", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "metabokg"}], "product_url": "https://github.com/HolobiomicsLab/MetaBoKG/tree/main/Schema", "secondary_source": [{"relation_type": "prov:wasInformedBy", "source": "ms"}, {"relation_type": "prov:wasInformedBy", "source": "chebi"}, {"relation_type": "prov:wasInformedBy", "source": "ncbitaxon"}, {"relation_type": "prov:wasInformedBy", "source": "envo"}, {"relation_type": "prov:wasInformedBy", "source": "ncit"}, {"relation_type": "prov:wasInformedBy", "source": "uberon"}, {"relation_type": "prov:wasInformedBy", "source": "chmo"}, {"relation_type": "prov:wasInformedBy", "source": "sio"}, {"relation_type": "prov:wasInformedBy", "source": "prov-o"}, {"relation_type": "prov:wasInformedBy", "source": "dcat"}, {"relation_type": "prov:wasInformedBy", "source": "afo"}]}, {"category": "Product", "description": "Download directory for Pathway Commons PC v14 integrated pathway and molecular interaction datasets, including BioPAX, SIF, GMT, TXT, and JSON-LD products.", "format": "mixed", "id": "pathwaycommons.downloads", "name": "Pathway Commons Data Downloads", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}, {"category": "Product", "compression": "gzip", "description": "PC v14 Simple Interaction Format network file representing binary pairwise molecular relationships integrated from Pathway Commons upstream datasource rows.", "format": "sif", "id": "pathwaycommons.sif", "name": "SIF Network Format", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_file_size": 9810179, "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/pc-hgnc.sif.gz", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}, {"category": "Product", "compression": "gzip", "description": "PC v14 Gene Matrix Transposed gene sets for pathway enrichment analysis, derived from the integrated Pathway Commons pathway archive.", "id": "pathwaycommons.gmt", "name": "GMT Gene Set Format", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_file_size": 262513, "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/pc-hgnc.gmt.gz", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}, {"category": "Product", "compression": "gzip", "description": "PC v14 tab-delimited extended SIF node and edge file using HGNC-oriented identifiers for integrated Pathway Commons interactions.", "format": "txt", "id": "pathwaycommons.txt", "name": "Extended SIF TXT Format", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_file_size": 115608500, "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/pc-hgnc.txt.gz", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}], "publications": [{"id": "https://doi.org/10.1093/nar/gkaf1271", "title": "ChEBI: re-engineered for a sustainable future"}, {"id": "https://www.ncbi.nlm.nih.gov/pubmed/26467479", "title": "ChEBI in 2016: Improved services and an expanding collection of metabolites."}], "repository": "https://github.com/ebi-chebi/ChEBI"}