snoDB
snoDB is a specialized database of human small nucleolar RNAs (snoRNAs), integrating data from established databases with manually curated literature. It provides comprehensive information on snoRNA genomic locations, sequences, conservation, host genes, snoRNA-RNA interactions, snoRNA-protein interactions, and abundance data across tissues and cancer cells.
[]
[{"category": "GraphicalInterface", "description": "Web portal for searching, browsing, and analyzing human snoRNA data with interactive tables and visualization tools", "format": "http", "id": "snodb.portal", "name": "snoDB 2.0 Portal", "product_url": "https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/"}, {"category": "GraphicalInterface", "description": "Interactive abundance viewer for visualizing snoRNA expression across tissues and cell lines", "format": "http", "id": "snodb.abundance-viewer", "name": "Abundance Viewer", "product_url": "https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/"}, {"category": "GraphicalInterface", "description": "Browser for exploring rRNA chemical modification sites and their guide snoRNAs", "format": "http", "id": "snodb.rrna-modifications", "name": "rRNA Chemical Modifications Browser", "product_url": "https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/rRNA_modifications/"}, {"category": "GraphicalInterface", "description": "Statistics dashboard showing snoRNA type distributions, length distributions, and target biotypes", "format": "http", "id": "snodb.statistics", "name": "Statistics Dashboard", "product_url": "https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/statistics/"}, {"category": "GraphicalInterface", "description": "Sequence similarity search tool for finding snoRNAs by sequence", "format": "http", "id": "snodb.sequence-search", "name": "Sequence Search Tool", "product_url": "https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/sequence_similarity_search/"}, {"category": "Product", "description": "Database of human snoRNA sequences with GRCh38 genomic coordinates", "format": "http", "id": "snodb.sequences", "name": "snoRNA Sequences", "product_url": "https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/", "warnings": ["File was not able to be retrieved when checked on 2026-01-30_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-28_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-15_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1017)')))", "File was not able to be retrieved when checked on 2026-02-04: Error connecting to URL: HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443): Max retries exceeded with url: /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1000)')))"]}, {"category": "Product", "description": "Conservation data including PhastCons scores for 100 vertebrates from UCSC genome browser", "format": "http", "id": "snodb.conservation", "name": "Conservation Data", "product_url": "https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/", "warnings": ["File was not able to be retrieved when checked on 2026-01-30_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-28_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-15_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1017)')))", "File was not able to be retrieved when checked on 2026-02-04: Error connecting to URL: HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443): Max retries exceeded with url: /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1000)')))"]}, {"category": "Product", "description": "snoRNA motif sequences and guide regions (boxes C, D, C', D' for C/D box snoRNAs; H and ACA boxes for H/ACA snoRNAs)", "format": "http", "id": "snodb.motifs", "name": "Motif and Guide Region Data", "product_url": "https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/", "warnings": ["File was not able to be retrieved when checked on 2026-01-30_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-28_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-15_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1017)')))", "File was not able to be retrieved when checked on 2026-02-04: Error connecting to URL: HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443): Max retries exceeded with url: /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1000)')))"]}, {"category": "Product", "description": "Host gene information with functional annotations from Gene Ontology", "format": "http", "id": "snodb.host-genes", "name": "Host Gene Data", "product_url": "https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/", "warnings": ["File was not able to be retrieved when checked on 2026-01-30_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-28_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-15_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1017)')))", "File was not able to be retrieved when checked on 2026-02-04: Error connecting to URL: HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443): Max retries exceeded with url: /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1000)')))"]}, {"category": "Product", "description": "Canonical snoRNA-rRNA and snoRNA-snRNA interactions from multiple sources", "format": "http", "id": "snodb.canonical-interactions", "name": "Canonical snoRNA-RNA Interactions", "product_url": "https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/", "warnings": ["File was not able to be retrieved when checked on 2026-01-30_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-28_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-15_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1017)')))", "File was not able to be retrieved when checked on 2026-02-04: Error connecting to URL: HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443): Max retries exceeded with url: /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1000)')))"]}, {"category": "Product", "description": "Non-canonical snoRNA-RNA interactions from RISE database", "format": "http", "id": "snodb.noncanonical-interactions", "name": "Non-canonical snoRNA-RNA Interactions", "product_url": "https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/", "warnings": ["File was not able to be retrieved when checked on 2026-01-30_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-28_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-15_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1017)')))", "File was not able to be retrieved when checked on 2026-02-04: Error connecting to URL: HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443): Max retries exceeded with url: /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1000)')))"]}, {"category": "Product", "description": "snoRNA-protein interactions from ENCODE eCLIP data of 150 RNA binding proteins", "format": "http", "id": "snodb.protein-interactions", "name": "snoRNA-Protein Interactions", "product_url": "https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/", "warnings": ["File was not able to be retrieved when checked on 2026-01-30_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-28_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-15_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1017)')))", "File was not able to be retrieved when checked on 2026-02-04: Error connecting to URL: HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443): Max retries exceeded with url: /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1000)')))"]}, {"category": "Product", "description": "snoRNA and host gene abundance data from TGIRT-Seq across tissues and cancer cell lines", "format": "http", "id": "snodb.abundance", "name": "Abundance Data", "product_url": "https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/", "warnings": ["File was not able to be retrieved when checked on 2026-01-30_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-28_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-15_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1017)')))", "File was not able to be retrieved when checked on 2026-02-04: Error connecting to URL: HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443): Max retries exceeded with url: /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1000)')))"]}, {"category": "Product", "description": "rRNA modification positions with validation status and modification levels from multiple studies", "format": "http", "id": "snodb.rrna-mods", "name": "rRNA Modification Data", "product_url": "https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/rRNA_modifications/", "warnings": ["File was not able to be retrieved when checked on 2026-01-30_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/rRNA_modifications/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-28_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/rRNA_modifications/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-15_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/rRNA_modifications/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1017)')))", "File was not able to be retrieved when checked on 2026-02-04: Error connecting to URL: HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443): Max retries exceeded with url: /snoDB/rRNA_modifications/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1000)')))"]}, {"category": "Product", "description": "snoRNA copy information based on RFAM classification", "format": "http", "id": "snodb.copies", "name": "snoRNA Copy Data", "product_url": "https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/", "warnings": ["File was not able to be retrieved when checked on 2026-01-30_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-28_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-15_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1017)')))", "File was not able to be retrieved when checked on 2026-02-04: Error connecting to URL: HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443): Max retries exceeded with url: /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1000)')))"]}, {"category": "Product", "description": "Exportable data tables with advanced search and filtering capabilities", "format": "http", "id": "snodb.export", "name": "Data Export", "product_url": "https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/", "warnings": ["File was not able to be retrieved when checked on 2026-01-30_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-28_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-15_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1017)')))", "File was not able to be retrieved when checked on 2026-02-04: Error connecting to URL: HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443): Max retries exceeded with url: /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1000)')))"]}, {"category": "ProcessProduct", "description": "Tool for integrating snoDB snoRNAs into Ensembl or RefSeq GTF annotation files", "format": "http", "id": "snodb.snorupdate", "name": "snoRupdate", "product_url": "https://github.com/scottgroup/snoRupdate"}, {"category": "DocumentationProduct", "description": "Comprehensive documentation about data sources, methods, and curation processes", "format": "http", "id": "snodb.about", "name": "About and Help Documentation", "product_url": "https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/about/", "warnings": ["File was not able to be retrieved when checked on 2026-01-30_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/about/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-28_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/about/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-15_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/about/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1017)')))", "File was not able to be retrieved when checked on 2026-02-04: Error connecting to URL: HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443): Max retries exceeded with url: /snoDB/about/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1000)')))"]}, {"category": "DocumentationProduct", "description": "Interactive tutorial for navigating and using snoDB features", "format": "http", "id": "snodb.tutorial", "name": "Tutorial", "product_url": "https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/tutorial/", "warnings": ["File was not able to be retrieved when checked on 2026-01-30_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/tutorial/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-28_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/tutorial/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-15_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/tutorial/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1017)')))", "File was not able to be retrieved when checked on 2026-02-04: Error connecting to URL: HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443): Max retries exceeded with url: /snoDB/tutorial/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1000)')))"]}, {"category": "DocumentationProduct", "description": "Detailed information about TGIRT-Seq data processing and experimental methods", "format": "http", "id": "snodb.experiment-details", "name": "Experiment Details", "product_url": "https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/experiment_details/", "warnings": ["File was not able to be retrieved when checked on 2026-01-30_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/experiment_details/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-28_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/experiment_details/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-15_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/experiment_details/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1017)')))", "File was not able to be retrieved when checked on 2026-02-04: Error connecting to URL: HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443): Max retries exceeded with url: /snoDB/experiment_details/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1000)')))"]}, {"category": "GraphicalInterface", "description": "Web portal for searching and browsing ncRNA sequences, structures, and annotations", "format": "http", "id": "rnacentral.portal", "name": "RNAcentral Portal", "original_source": ["5srrnadb", "crd", "dictybase", "ena", "ensembl", "evlncrnas", "expressionatlas", "flybase", "genecards", "greengenes", "gtrnadb", "hgnc", "intact", "lncbase", "lncbook", "lncipedia", "lncrnadb", "malacards", "mgnify", "mirbase", "mirgenedb", "modomics", "noncode", "pdbe", "pirbase", "plncdb", "pombase", "rdp", "rediportal", "rfam", "rgd", "ribocentre", "ribovision", "sgd", "silva", "snodb", "snopy", "snornadatabase", "srpdb", "tair", "tarbase", "tmrnawebsite", "zfin", "zwd", "rnacentral"], "product_url": "https://rnacentral.org/"}, {"category": "ProgrammingInterface", "description": "REST API for programmatic access to RNAcentral data", "format": "http", "id": 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"Product", "description": "Database of human snoRNA sequences with GRCh38 genomic coordinates", "format": "http", "id": "snodb.sequences", "name": "snoRNA Sequences", "product_url": "https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/", "warnings": ["File was not able to be retrieved when checked on 2026-01-30_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-28_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-15_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1017)')))", "File was not able to be retrieved when checked on 2026-02-04: Error connecting to URL: HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443): Max retries exceeded with url: /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1000)')))"]}, {"category": "Product", "description": "Conservation data including PhastCons scores for 100 vertebrates from UCSC genome browser", "format": "http", "id": "snodb.conservation", "name": "Conservation Data", "product_url": "https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/", "warnings": ["File was not able to be retrieved when checked on 2026-01-30_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-28_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-15_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1017)')))", "File was not able to be retrieved when checked on 2026-02-04: Error connecting to URL: HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443): Max retries exceeded with url: /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1000)')))"]}, {"category": "Product", "description": "snoRNA motif sequences and guide regions (boxes C, D, C', D' for C/D box snoRNAs; H and ACA boxes for H/ACA snoRNAs)", "format": "http", "id": "snodb.motifs", "name": "Motif and Guide Region Data", "product_url": "https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/", "warnings": ["File was not able to be retrieved when checked on 2026-01-30_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-28_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-15_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1017)')))", "File was not able to be retrieved when checked on 2026-02-04: Error connecting to URL: HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443): Max retries exceeded with url: /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1000)')))"]}, {"category": "Product", "description": "Host gene information with functional annotations from Gene Ontology", "format": "http", "id": "snodb.host-genes", "name": "Host Gene Data", "product_url": "https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/", "warnings": ["File was not able to be retrieved when checked on 2026-01-30_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-28_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-15_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1017)')))", "File was not able to be retrieved when checked on 2026-02-04: Error connecting to URL: HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443): Max retries exceeded with url: /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1000)')))"]}, {"category": "Product", "description": "Canonical snoRNA-rRNA and snoRNA-snRNA interactions from multiple sources", "format": "http", "id": "snodb.canonical-interactions", "name": "Canonical snoRNA-RNA Interactions", "product_url": "https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/", "warnings": ["File was not able to be retrieved when checked on 2026-01-30_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-28_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-15_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1017)')))", "File was not able to be retrieved when checked on 2026-02-04: Error connecting to URL: HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443): Max retries exceeded with url: /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1000)')))"]}, {"category": "Product", "description": "Non-canonical snoRNA-RNA interactions from RISE database", "format": "http", "id": "snodb.noncanonical-interactions", "name": "Non-canonical snoRNA-RNA Interactions", "product_url": "https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/", "warnings": ["File was not able to be retrieved when checked on 2026-01-30_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-28_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-15_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1017)')))", "File was not able to be retrieved when checked on 2026-02-04: Error connecting to URL: HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443): Max retries exceeded with url: /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1000)')))"]}, {"category": "Product", "description": "snoRNA-protein interactions from ENCODE eCLIP data of 150 RNA binding proteins", "format": "http", "id": "snodb.protein-interactions", "name": "snoRNA-Protein Interactions", "product_url": "https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/", "warnings": ["File was not able to be retrieved when checked on 2026-01-30_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-28_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-15_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1017)')))", "File was not able to be retrieved when checked on 2026-02-04: Error connecting to URL: HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443): Max retries exceeded with url: /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1000)')))"]}, {"category": "Product", "description": "snoRNA and host gene abundance data from TGIRT-Seq across tissues and cancer cell lines", "format": "http", "id": "snodb.abundance", "name": "Abundance Data", "product_url": "https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/", "warnings": ["File was not able to be retrieved when checked on 2026-01-30_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-28_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-15_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1017)')))", "File was not able to be retrieved when checked on 2026-02-04: Error connecting to URL: HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443): Max retries exceeded with url: /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1000)')))"]}, {"category": "Product", "description": "rRNA modification positions with validation status and modification levels from multiple studies", "format": "http", "id": "snodb.rrna-mods", "name": "rRNA Modification Data", "product_url": "https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/rRNA_modifications/", "warnings": ["File was not able to be retrieved when checked on 2026-01-30_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/rRNA_modifications/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-28_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/rRNA_modifications/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-15_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/rRNA_modifications/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1017)')))", "File was not able to be retrieved when checked on 2026-02-04: Error connecting to URL: HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443): Max retries exceeded with url: /snoDB/rRNA_modifications/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1000)')))"]}, {"category": "Product", "description": "snoRNA copy information based on RFAM classification", "format": "http", "id": "snodb.copies", "name": "snoRNA Copy Data", "product_url": "https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/", "warnings": ["File was not able to be retrieved when checked on 2026-01-30_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-28_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-15_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1017)')))", "File was not able to be retrieved when checked on 2026-02-04: Error connecting to URL: HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443): Max retries exceeded with url: /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1000)')))"]}, {"category": "Product", "description": "Exportable data tables with advanced search and filtering capabilities", "format": "http", "id": "snodb.export", "name": "Data Export", "product_url": "https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/", "warnings": ["File was not able to be retrieved when checked on 2026-01-30_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-28_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-15_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1017)')))", "File was not able to be retrieved when checked on 2026-02-04: Error connecting to URL: HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443): Max retries exceeded with url: /snoDB/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1000)')))"]}, {"category": "ProcessProduct", "description": "Tool for integrating snoDB snoRNAs into Ensembl or RefSeq GTF annotation files", "format": "http", "id": "snodb.snorupdate", "name": "snoRupdate", "product_url": "https://github.com/scottgroup/snoRupdate"}, {"category": "DocumentationProduct", "description": "Comprehensive documentation about data sources, methods, and curation processes", "format": "http", "id": "snodb.about", "name": "About and Help Documentation", "product_url": "https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/about/", "warnings": ["File was not able to be retrieved when checked on 2026-01-30_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/about/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-28_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/about/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-15_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/about/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1017)')))", "File was not able to be retrieved when checked on 2026-02-04: Error connecting to URL: HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443): Max retries exceeded with url: /snoDB/about/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1000)')))"]}, {"category": "DocumentationProduct", "description": "Interactive tutorial for navigating and using snoDB features", "format": "http", "id": "snodb.tutorial", "name": "Tutorial", "product_url": "https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/tutorial/", "warnings": ["File was not able to be retrieved when checked on 2026-01-30_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/tutorial/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-28_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/tutorial/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-15_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/tutorial/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1017)')))", "File was not able to be retrieved when checked on 2026-02-04: Error connecting to URL: HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443): Max retries exceeded with url: /snoDB/tutorial/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1000)')))"]}, {"category": "DocumentationProduct", "description": "Detailed information about TGIRT-Seq data processing and experimental methods", "format": "http", "id": "snodb.experiment-details", "name": "Experiment Details", "product_url": "https://bioinfo-scottgroup.med.usherbrooke.ca/snoDB/experiment_details/", "warnings": ["File was not able to be retrieved when checked on 2026-01-30_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/experiment_details/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-28_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/experiment_details/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1000)')))", "File was not able to be retrieved when checked on 2026-01-15_ Error connecting to URL_ HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443)_ Max retries exceeded with url_ /snoDB/experiment_details/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL_ CERTIFICATE_VERIFY_FAILED] certificate verify failed_ unable to get local issuer certificate (_ssl.c_1017)')))", "File was not able to be retrieved when checked on 2026-02-04: Error connecting to URL: HTTPSConnectionPool(host='bioinfo-scottgroup.med.usherbrooke.ca', port=443): Max retries exceeded with url: /snoDB/experiment_details/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1000)')))"]}, {"category": "GraphicalInterface", "description": "Web portal for searching and browsing ncRNA sequences, structures, and annotations", "format": "http", "id": "rnacentral.portal", "name": "RNAcentral Portal", "original_source": ["5srrnadb", "crd", "dictybase", "ena", "ensembl", "evlncrnas", "expressionatlas", "flybase", "genecards", "greengenes", "gtrnadb", "hgnc", "intact", "lncbase", "lncbook", "lncipedia", "lncrnadb", "malacards", "mgnify", "mirbase", "mirgenedb", "modomics", "noncode", "pdbe", "pirbase", "plncdb", "pombase", "rdp", "rediportal", "rfam", "rgd", "ribocentre", "ribovision", "sgd", "silva", "snodb", "snopy", "snornadatabase", "srpdb", "tair", "tarbase", "tmrnawebsite", "zfin", "zwd", "rnacentral"], "product_url": "https://rnacentral.org/"}, {"category": "ProgrammingInterface", "description": "REST API for programmatic access to RNAcentral data", "format": "http", "id": "rnacentral.api", "name": "RNAcentral REST API", "original_source": ["5srrnadb", "crd", "dictybase", "ena", "ensembl", "evlncrnas", "expressionatlas", "flybase", "genecards", "greengenes", "gtrnadb", "hgnc", "intact", "lncbase", "lncbook", "lncipedia", "lncrnadb", "malacards", "mgnify", "mirbase", "mirgenedb", "modomics", "noncode", "pdbe", "pirbase", "plncdb", "pombase", "rdp", "rediportal", "rfam", "rgd", "ribocentre", "ribovision", "sgd", "silva", "snodb", "snopy", "snornadatabase", "srpdb", "tair", "tarbase", "tmrnawebsite", "zfin", "zwd", "rnacentral"], "product_url": "https://rnacentral.org/api"}, {"category": "Product", "description": "FTP archive with current and archived release files (sequences and annotations)", "format": "http", "id": "rnacentral.ftp", "name": "RNAcentral FTP Archive", "original_source": ["5srrnadb", "crd", "dictybase", "ena", "ensembl", "evlncrnas", "expressionatlas", "flybase", "genecards", "greengenes", "gtrnadb", "hgnc", "intact", "lncbase", "lncbook", "lncipedia", "lncrnadb", "malacards", "mgnify", "mirbase", "mirgenedb", "modomics", "noncode", "pdbe", "pirbase", "plncdb", "pombase", "rdp", "rediportal", "rfam", "rgd", "ribocentre", "ribovision", "sgd", "silva", "snodb", "snopy", "snornadatabase", "srpdb", "tair", "tarbase", "tmrnawebsite", "zfin", "zwd", "rnacentral"], "product_url": "https://ftp.ebi.ac.uk/pub/databases/RNAcentral"}, {"category": "DataModelProduct", "description": "Public PostgreSQL database for direct SQL access to RNAcentral data", "format": "postgres", "id": "rnacentral.public-db", "name": "RNAcentral Public Postgres Database", "original_source": ["5srrnadb", "crd", "dictybase", "ena", "ensembl", "evlncrnas", "expressionatlas", "flybase", "genecards", "greengenes", "gtrnadb", "hgnc", "intact", "lncbase", "lncbook", "lncipedia", "lncrnadb", "malacards", "mgnify", "mirbase", "mirgenedb", "modomics", "noncode", "pdbe", "pirbase", "plncdb", "pombase", "rdp", "rediportal", "rfam", "rgd", "ribocentre", "ribovision", "sgd", "silva", "snodb", "snopy", "snornadatabase", "srpdb", "tair", "tarbase", "tmrnawebsite", "zfin", "zwd", "rnacentral"], "product_url": "https://rnacentral.org/help/public-database"}], "publications": [{"authors": ["Bergeron", "Paraqindes", "Fafard-Couture", "Deschamps-Francoeur", "Faucher-Gigu\u00e8re", "Bouchard-Bourelle", "Abou Elela", "Catez", "Marcel", "Scott"], "id": "https://pubmed.ncbi.nlm.nih.gov/36165892/", "journal": "Nucleic Acids Research", "preferred": true, "title": "snoDB 2.0: an enhanced interactive database, specializing in human snoRNAs", "year": "2023"}], "taxon": ["NCBITaxon:9606"]}