MassIVE
MassIVE is a community mass spectrometry data repository developed by the NIH-funded UC San Diego Center for Computational Mass Spectrometry to support global, free exchange, browsing, redistribution, reanalysis, and publication-linked sharing of mass spectrometry datasets.
[{"category": "Organization", "contact_details": [{"contact_type": "url", "value": "https://ccms.ucsd.edu/"}], "label": "UC San Diego Center for Computational Mass Spectrometry"}]
[{"category": "GraphicalInterface", "description": "MassIVE web portal for submitting, browsing, downloading, and reanalyzing public mass spectrometry datasets.", "format": "http", "id": "massive.portal", "name": "MassIVE Web Portal", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "massive"}], "product_url": "https://massive.ucsd.edu/ProteoSAFe/static/massive.jsp"}, {"category": "DocumentationProduct", "description": "MassIVE documentation covering dataset sharing, public dataset access, reanalysis workflows, APIs, and related MassIVE services.", "format": "http", "id": "massive.docs", "name": "MassIVE Documentation", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "massive"}], "product_url": "https://ccms-ucsd.github.io/MassIVEDocumentation/"}, {"category": "GraphProduct", "description": "RDF knowledge graph materialized by the MetaBoKG workflow from public metabolomics repository outputs, GNPS molecular-networking jobs, annotation evidence, sample metadata, and environmental and taxonomic context. The repository documents generated per-job Turtle files under mapping/kg and loading into Virtuoso named graphs.", "id": "metabokg.graph", "latest_version": "arXiv v1 demonstration", "name": "MetaboKG RDF Graph", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "metabokg"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmed"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmedcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "gnps"}, {"relation_type": "prov:hadPrimarySource", "source": "massive"}, {"relation_type": "prov:hadPrimarySource", "source": "redu"}], "product_url": "https://github.com/HolobiomicsLab/MetaBoKG", "secondary_source": [{"relation_type": "prov:used", "source": "ms"}, {"relation_type": "prov:used", "source": "chebi"}, {"relation_type": "prov:used", "source": "ncbitaxon"}, {"relation_type": "prov:used", "source": "envo"}, {"relation_type": "prov:used", "source": "ncit"}, {"relation_type": "prov:used", "source": "uberon"}, {"relation_type": "prov:used", "source": "chmo"}, {"relation_type": "prov:used", "source": "sio"}, {"relation_type": "prov:used", "source": "prov-o"}, {"relation_type": "prov:used", "source": "dcat"}, {"relation_type": "prov:used", "source": "afo"}], "warnings": ["No static public graph release or hosted endpoint was available in the GitHub repository when curated on 2026-06-02; the repository documents local Turtle materialization and Virtuoso loading."]}, {"category": "MappingProduct", "description": "RML mappings and configuration templates used to transform GNPS, molecular networking, feature-based molecular networking, and ReDU data into RDF.", "format": "http", "id": "metabokg.rml_mappings", "license": {"id": "https://www.apache.org/licenses/LICENSE-2.0", "label": "Apache License 2.0"}, "name": "MetaBoKG RML Mappings", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "metabokg"}], "product_url": "https://github.com/HolobiomicsLab/MetaBoKG/tree/main/mapping/rml", "secondary_source": [{"relation_type": "prov:wasInformedBy", "source": "gnps"}, {"relation_type": "prov:wasInformedBy", "source": "massive"}, {"relation_type": "prov:wasInformedBy", "source": "redu"}]}, {"category": "GraphicalInterface", "description": "Pan-ReDU dashboard and file-selection interface for exploring daily updated public metabolomics metadata and selecting public data for GNPS reanalysis.", "format": "http", "id": "redu.dashboard", "name": "Pan-ReDU Dashboard", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "redu"}], "product_url": "https://redu.gnps2.org/selection/", "secondary_source": [{"relation_type": "prov:wasInformedBy", "source": "gnps"}, {"relation_type": "prov:wasInformedBy", "source": "massive"}]}]
{"activity_status": "active", "category": "DataSource", "contacts": [{"category": "Organization", "contact_details": [{"contact_type": "url", "value": "https://ccms.ucsd.edu/"}], "label": "UC San Diego Center for Computational Mass Spectrometry"}], "creation_date": "2026-06-02T00:00:00Z", "description": "MassIVE is a community mass spectrometry data repository developed by the NIH-funded UC San Diego Center for Computational Mass Spectrometry to support global, free exchange, browsing, redistribution, reanalysis, and publication-linked sharing of mass spectrometry datasets.", "domains": ["chemistry and biochemistry", "biomedical", "proteomics"], "homepage_url": "https://massive.ucsd.edu/ProteoSAFe/static/massive.jsp", "id": "massive", "last_modified_date": "2026-06-05T00:00:00Z", "layout": "resource_detail", "name": "MassIVE", "products": [{"category": "GraphicalInterface", "description": "MassIVE web portal for submitting, browsing, downloading, and reanalyzing public mass spectrometry datasets.", "format": "http", "id": "massive.portal", "name": "MassIVE Web Portal", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "massive"}], "product_url": "https://massive.ucsd.edu/ProteoSAFe/static/massive.jsp"}, {"category": "DocumentationProduct", "description": "MassIVE documentation covering dataset sharing, public dataset access, reanalysis workflows, APIs, and related MassIVE services.", "format": "http", "id": "massive.docs", "name": "MassIVE Documentation", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "massive"}], "product_url": "https://ccms-ucsd.github.io/MassIVEDocumentation/"}, {"category": "GraphProduct", "description": "RDF knowledge graph materialized by the MetaBoKG workflow from public metabolomics repository outputs, GNPS molecular-networking jobs, annotation evidence, sample metadata, and environmental and taxonomic context. The repository documents generated per-job Turtle files under mapping/kg and loading into Virtuoso named graphs.", "id": "metabokg.graph", "latest_version": "arXiv v1 demonstration", "name": "MetaboKG RDF Graph", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "metabokg"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmed"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmedcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "gnps"}, {"relation_type": "prov:hadPrimarySource", "source": "massive"}, {"relation_type": "prov:hadPrimarySource", "source": "redu"}], "product_url": "https://github.com/HolobiomicsLab/MetaBoKG", "secondary_source": [{"relation_type": "prov:used", "source": "ms"}, {"relation_type": "prov:used", "source": "chebi"}, {"relation_type": "prov:used", "source": "ncbitaxon"}, {"relation_type": "prov:used", "source": "envo"}, {"relation_type": "prov:used", "source": "ncit"}, {"relation_type": "prov:used", "source": "uberon"}, {"relation_type": "prov:used", "source": "chmo"}, {"relation_type": "prov:used", "source": "sio"}, {"relation_type": "prov:used", "source": "prov-o"}, {"relation_type": "prov:used", "source": "dcat"}, {"relation_type": "prov:used", "source": "afo"}], "warnings": ["No static public graph release or hosted endpoint was available in the GitHub repository when curated on 2026-06-02; the repository documents local Turtle materialization and Virtuoso loading."]}, {"category": "MappingProduct", "description": "RML mappings and configuration templates used to transform GNPS, molecular networking, feature-based molecular networking, and ReDU data into RDF.", "format": "http", "id": "metabokg.rml_mappings", "license": {"id": "https://www.apache.org/licenses/LICENSE-2.0", "label": "Apache License 2.0"}, "name": "MetaBoKG RML Mappings", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "metabokg"}], "product_url": "https://github.com/HolobiomicsLab/MetaBoKG/tree/main/mapping/rml", "secondary_source": [{"relation_type": "prov:wasInformedBy", "source": "gnps"}, {"relation_type": "prov:wasInformedBy", "source": "massive"}, {"relation_type": "prov:wasInformedBy", "source": "redu"}]}, {"category": "GraphicalInterface", "description": "Pan-ReDU dashboard and file-selection interface for exploring daily updated public metabolomics metadata and selecting public data for GNPS reanalysis.", "format": "http", "id": "redu.dashboard", "name": "Pan-ReDU Dashboard", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "redu"}], "product_url": "https://redu.gnps2.org/selection/", "secondary_source": [{"relation_type": "prov:wasInformedBy", "source": "gnps"}, {"relation_type": "prov:wasInformedBy", "source": "massive"}]}], "publications": [{"id": "https://doi.org/10.1038/nbt.3597", "journal": "Nature Biotechnology", "title": "Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking", "year": "2016"}], "synonyms": ["Mass Spectrometry Interactive Virtual Environment", "MassIVE"]}