dbSNP
dbSNP contains human single nucleotide variations, microsatellites, and small-scale insertions and deletions along with publication, population frequency, molecular consequence, and genomic and RefSeq mapping information for both common variations and clinical mutations.
[{"category": "Organization", "contact_details": [{"contact_type": "email", "value": "info@ncbi.nlm.nih.gov"}, {"contact_type": "url", "value": "https://www.ncbi.nlm.nih.gov/home/about/contact/"}], "id": "ncbi", "label": "National Center for Biotechnology Information (NCBI)"}]
[{"category": "GraphicalInterface", "description": "Web interface for searching and exploring dbSNP data", "id": "dbsnp.site", "is_public": true, "name": "dbSNP Web Interface", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "dbsnp"}], "product_url": "https://www.ncbi.nlm.nih.gov/snp/"}, {"category": "ProgrammingInterface", "description": "Programmatic access to dbSNP data via the NCBI E-utilities API", "id": "dbsnp.api", "is_public": true, "name": "dbSNP E-utilities API", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "dbsnp"}], "product_url": "https://www.ncbi.nlm.nih.gov/books/NBK25500/"}, {"category": "Product", "compression": "gzip", "description": "JSON format files with dbSNP RefSNP data", "format": "json", "id": "dbsnp.json", "name": "dbSNP JSON Files", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "dbsnp"}], "product_url": "https://ftp.ncbi.nih.gov/snp/latest_release/JSON/"}, {"category": "ProgrammingInterface", "description": "NCBI Variation Services API for accessing and manipulating variant data", "id": "dbsnp.variation.api", "is_public": true, "name": "NCBI Variation Services API", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "dbsnp"}], "product_url": "https://api.ncbi.nlm.nih.gov/variation/v0/"}, {"category": "GraphProduct", "compression": "zip", "description": "Nodes from dbSNP", "format": "csv", "id": "biomarkerkg.nodes.variant", "name": "BKG Variant Nodes", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "biomarkerkg"}, {"relation_type": "prov:hadPrimarySource", "source": "dbsnp"}], "product_file_size": 782975, "product_url": "https://s3.amazonaws.com/maayan-kg/biomarker-kg/Variant.nodes.zip"}, {"category": "GraphProduct", "description": "RNA-KG as a Neo4j Dump", "format": "neo4j", "id": "rna-kg.kg.neo4j", "name": "RNA-KG Neo4j Dump", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "circbase"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "cosmic"}, {"relation_type": "prov:hadPrimarySource", "source": "dbsnp"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "pr"}, {"relation_type": "prov:hadPrimarySource", "source": "pw"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "rna-kg"}, {"relation_type": "prov:hadPrimarySource", "source": "rnacentral"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "vo"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}], "product_file_size": 3976840239, "product_url": "https://rna-kg.biodata.di.unimi.it/rnakgv20.dump"}, {"category": "GraphProduct", "description": "RNA-KG Nodes in CSV format", "format": "csv", "id": "rna-kg.kg.nodes", "name": "RNA-KG Nodes", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "circbase"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "cosmic"}, {"relation_type": "prov:hadPrimarySource", "source": "dbsnp"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "pr"}, {"relation_type": "prov:hadPrimarySource", "source": "pw"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "rna-kg"}, {"relation_type": "prov:hadPrimarySource", "source": "rnacentral"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "vo"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}], "product_file_size": 4424633304, "product_url": "https://rna-kg.biodata.di.unimi.it/nodes.csv"}, {"category": "GraphProduct", "description": "RNA-KG Edges in CSV format", "format": "csv", "id": "rna-kg.kg.edges", "name": "RNA-KG Edges", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "circbase"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "cosmic"}, {"relation_type": "prov:hadPrimarySource", "source": "dbsnp"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "pr"}, {"relation_type": "prov:hadPrimarySource", "source": "pw"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "rna-kg"}, {"relation_type": "prov:hadPrimarySource", "source": "rnacentral"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "vo"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}], "product_file_size": 18370248815, "product_url": "https://rna-kg.biodata.di.unimi.it/edges.csv"}, {"category": "Product", "description": "Genetic variant data from ClinVar, dbSNP, GWAS Catalog and other variant databases", "format": "http", "id": "genecards.variant.data", "name": "GeneCards Variant Data", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "dbsnp"}, {"relation_type": "prov:hadPrimarySource", "source": "genecards"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}], "product_url": "https://www.genecards.org/", "warnings": ["File was not able to be retrieved when checked on 2026-06-05: HTTP 403 error when accessing file", "File was not able to be retrieved when checked on 2026-03-30_ HTTP 403 error when accessing file"]}, {"category": "GraphProduct", "compression": "gzip", "description": "PharMeBINet V2 JSON release published on February 6, 2024.", "format": "json", "id": "pharmebinet.json", "latest_version": "v2", "name": "PharMeBINet JSON Release", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 1942958027, "product_url": "https://zenodo.org/api/records/17814889/files/pharmebinet_24_02_06.json.gz/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "compression": "zip", "description": "PharMeBINet V2 TSV release published on February 6, 2024.", "format": "tsv", "id": "pharmebinet.tsv", "latest_version": "v2", "name": "PharMeBINet TSV Release", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 1922614551, "product_url": "https://zenodo.org/api/records/17814889/files/pharmebinet_tsv_24_02_06.zip/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "compression": "zip", "description": "PharMeBINet V2 GraphML release published on February 6, 2024.", "format": "mixed", "id": "pharmebinet.graphml", "latest_version": "v2", "name": "PharMeBINet GraphML Release", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 2027519087, "product_url": "https://zenodo.org/api/records/17814889/files/PharMeBiNet_graphml_24_02_06.zip/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "compression": "zip", "description": "PharMeBINet V2 Neo4j database release published on February 6, 2024.", "format": "neo4j", "id": "pharmebinet.neo4j", "latest_version": "v2", "name": "PharMeBINet Neo4j Database", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 3847978577, "product_url": "https://zenodo.org/api/records/17814889/files/pharmebinet_24_02_06.zip/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "compression": "zip", "description": "PharMeBINet V2 Neo4j dump release published on February 6, 2024.", "dump_format": "neo4j", "format": "neo4j", "id": "pharmebinet.neo4j.dump", "latest_version": "v2", "name": "PharMeBINet Neo4j Dump", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 3598325722, "product_url": "https://zenodo.org/api/records/17814889/files/pharmebinet_dump_24_02_06.zip/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphicalInterface", "description": "Web interface for searching and retrieving variant information from 35+ million PubMed articles with autocomplete, filtering, and entity highlighting", "format": "http", "id": "litvar.web_interface", "name": "LitVar Web Interface", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "litvar"}], "product_url": "https://www.ncbi.nlm.nih.gov/research/litvar2/", "secondary_source": [{"relation_type": "prov:wasInformedBy", "source": "clingen"}, {"relation_type": "prov:wasInformedBy", "source": "clinvar"}, {"relation_type": "prov:wasInformedBy", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "pmc"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubmed"}, {"relation_type": "prov:used", "source": "pubtator"}]}, {"category": "ProgrammingInterface", "description": "RESTful API providing programmatic access to variant summaries, publications, search, and gene-level variant queries", "format": "http", "id": "litvar.api", "name": "LitVar API", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "litvar"}], "product_url": "https://www.ncbi.nlm.nih.gov/research/litvar2-api/", "secondary_source": [{"relation_type": "prov:wasInformedBy", "source": "clingen"}, {"relation_type": "prov:wasInformedBy", "source": "clinvar"}, {"relation_type": "prov:wasInformedBy", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "pmc"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubmed"}, {"relation_type": "prov:used", "source": "pubtator"}]}, {"category": "ProgrammingInterface", "description": "MarkerDB API documentation and endpoint examples for condition, chemical, genetic, protein, and karyotype biomarker records.", "format": "http", "id": "markerdb.api", "name": "MarkerDB API", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "markerdb"}], "product_url": "https://markerdb.ca/markerdb_api", "secondary_source": [{"relation_type": "prov:wasInformedBy", "source": "dbsnp"}, {"relation_type": "prov:wasInformedBy", "source": "gwascatalog"}, {"relation_type": "prov:wasInformedBy", "source": "hmdb"}, {"relation_type": "prov:wasInformedBy", "source": "omim"}, {"relation_type": "prov:wasInformedBy", "source": "pubchem"}, {"relation_type": "prov:wasInformedBy", "source": "uniprot"}]}, {"category": "Product", "description": "TSV export of MarkerDB genetic biomarkers with associated conditions.", "format": "tsv", "id": "markerdb.sequence_variants.tsv", "name": "MarkerDB Genetic Biomarkers TSV", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "markerdb"}], "product_url": "https://markerdb.ca/pages/download_all_sequence_variants?format=tsv", "secondary_source": [{"relation_type": "prov:wasInformedBy", "source": "dbsnp"}, {"relation_type": "prov:wasInformedBy", "source": "gwascatalog"}, {"relation_type": "prov:wasInformedBy", "source": "omim"}], "warnings": ["File was not able to be retrieved when checked on 2026-06-05: No Content-Length header found"]}]
{"activity_status": "active", "category": "DataSource", "contacts": [{"category": "Organization", "contact_details": [{"contact_type": "email", "value": "info@ncbi.nlm.nih.gov"}, {"contact_type": "url", "value": "https://www.ncbi.nlm.nih.gov/home/about/contact/"}], "id": "ncbi", "label": "National Center for Biotechnology Information (NCBI)"}], "creation_date": "2025-05-04T00:00:00Z", "description": "dbSNP contains human single nucleotide variations, microsatellites, and small-scale insertions and deletions along with publication, population frequency, molecular consequence, and genomic and RefSeq mapping information for both common variations and clinical mutations.", "domains": ["biological systems", "biomedical"], "homepage_url": "https://www.ncbi.nlm.nih.gov/snp/", "id": "dbsnp", "infores_id": "dbsnp", "last_modified_date": "2026-02-20T00:00:00Z", "layout": "resource_detail", "license": {"id": "https://www.ncbi.nlm.nih.gov/home/about/policies/", "label": "Public Domain"}, "name": "dbSNP", "products": [{"category": "GraphicalInterface", "description": "Web interface for searching and exploring dbSNP data", "id": "dbsnp.site", "is_public": true, "name": "dbSNP Web Interface", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "dbsnp"}], "product_url": "https://www.ncbi.nlm.nih.gov/snp/"}, {"category": "ProgrammingInterface", "description": "Programmatic access to dbSNP data via the NCBI E-utilities API", "id": "dbsnp.api", "is_public": true, "name": "dbSNP E-utilities API", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "dbsnp"}], "product_url": "https://www.ncbi.nlm.nih.gov/books/NBK25500/"}, {"category": "Product", "compression": "gzip", "description": "JSON format files with dbSNP RefSNP data", "format": "json", "id": "dbsnp.json", "name": "dbSNP JSON Files", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "dbsnp"}], "product_url": "https://ftp.ncbi.nih.gov/snp/latest_release/JSON/"}, {"category": "ProgrammingInterface", "description": "NCBI Variation Services API for accessing and manipulating variant data", "id": "dbsnp.variation.api", "is_public": true, "name": "NCBI Variation Services API", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "dbsnp"}], "product_url": "https://api.ncbi.nlm.nih.gov/variation/v0/"}, {"category": "GraphProduct", "compression": "zip", "description": "Nodes from dbSNP", "format": "csv", "id": "biomarkerkg.nodes.variant", "name": "BKG Variant Nodes", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "biomarkerkg"}, {"relation_type": "prov:hadPrimarySource", "source": "dbsnp"}], "product_file_size": 782975, "product_url": "https://s3.amazonaws.com/maayan-kg/biomarker-kg/Variant.nodes.zip"}, {"category": "GraphProduct", "description": "RNA-KG as a Neo4j Dump", "format": "neo4j", "id": "rna-kg.kg.neo4j", "name": "RNA-KG Neo4j Dump", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "circbase"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "cosmic"}, {"relation_type": "prov:hadPrimarySource", "source": "dbsnp"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "pr"}, {"relation_type": "prov:hadPrimarySource", "source": "pw"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "rna-kg"}, {"relation_type": "prov:hadPrimarySource", "source": "rnacentral"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "vo"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}], "product_file_size": 3976840239, "product_url": "https://rna-kg.biodata.di.unimi.it/rnakgv20.dump"}, {"category": "GraphProduct", "description": "RNA-KG Nodes in CSV format", "format": "csv", "id": "rna-kg.kg.nodes", "name": "RNA-KG Nodes", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "circbase"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "cosmic"}, {"relation_type": "prov:hadPrimarySource", "source": "dbsnp"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "pr"}, {"relation_type": "prov:hadPrimarySource", "source": "pw"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "rna-kg"}, {"relation_type": "prov:hadPrimarySource", "source": "rnacentral"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "vo"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}], "product_file_size": 4424633304, "product_url": "https://rna-kg.biodata.di.unimi.it/nodes.csv"}, {"category": "GraphProduct", "description": "RNA-KG Edges in CSV format", "format": "csv", "id": "rna-kg.kg.edges", "name": "RNA-KG Edges", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "circbase"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "cosmic"}, {"relation_type": "prov:hadPrimarySource", "source": "dbsnp"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "pr"}, {"relation_type": "prov:hadPrimarySource", "source": "pw"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "rna-kg"}, {"relation_type": "prov:hadPrimarySource", "source": "rnacentral"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "vo"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}], "product_file_size": 18370248815, "product_url": "https://rna-kg.biodata.di.unimi.it/edges.csv"}, {"category": "Product", "description": "Genetic variant data from ClinVar, dbSNP, GWAS Catalog and other variant databases", "format": "http", "id": "genecards.variant.data", "name": "GeneCards Variant Data", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "dbsnp"}, {"relation_type": "prov:hadPrimarySource", "source": "genecards"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}], "product_url": "https://www.genecards.org/", "warnings": ["File was not able to be retrieved when checked on 2026-06-05: HTTP 403 error when accessing file", "File was not able to be retrieved when checked on 2026-03-30_ HTTP 403 error when accessing file"]}, {"category": "GraphProduct", "compression": "gzip", "description": "PharMeBINet V2 JSON release published on February 6, 2024.", "format": "json", "id": "pharmebinet.json", "latest_version": "v2", "name": "PharMeBINet JSON Release", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 1942958027, "product_url": "https://zenodo.org/api/records/17814889/files/pharmebinet_24_02_06.json.gz/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "compression": "zip", "description": "PharMeBINet V2 TSV release published on February 6, 2024.", "format": "tsv", "id": "pharmebinet.tsv", "latest_version": "v2", "name": "PharMeBINet TSV Release", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 1922614551, "product_url": "https://zenodo.org/api/records/17814889/files/pharmebinet_tsv_24_02_06.zip/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "compression": "zip", "description": "PharMeBINet V2 GraphML release published on February 6, 2024.", "format": "mixed", "id": "pharmebinet.graphml", "latest_version": "v2", "name": "PharMeBINet GraphML Release", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 2027519087, "product_url": "https://zenodo.org/api/records/17814889/files/PharMeBiNet_graphml_24_02_06.zip/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "compression": "zip", "description": "PharMeBINet V2 Neo4j database release published on February 6, 2024.", "format": "neo4j", "id": "pharmebinet.neo4j", "latest_version": "v2", "name": "PharMeBINet Neo4j Database", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 3847978577, "product_url": "https://zenodo.org/api/records/17814889/files/pharmebinet_24_02_06.zip/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "compression": "zip", "description": "PharMeBINet V2 Neo4j dump release published on February 6, 2024.", "dump_format": "neo4j", "format": "neo4j", "id": "pharmebinet.neo4j.dump", "latest_version": "v2", "name": "PharMeBINet Neo4j Dump", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 3598325722, "product_url": "https://zenodo.org/api/records/17814889/files/pharmebinet_dump_24_02_06.zip/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphicalInterface", "description": "Web interface for searching and retrieving variant information from 35+ million PubMed articles with autocomplete, filtering, and entity highlighting", "format": "http", "id": "litvar.web_interface", "name": "LitVar Web Interface", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "litvar"}], "product_url": "https://www.ncbi.nlm.nih.gov/research/litvar2/", "secondary_source": [{"relation_type": "prov:wasInformedBy", "source": "clingen"}, {"relation_type": "prov:wasInformedBy", "source": "clinvar"}, {"relation_type": "prov:wasInformedBy", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "pmc"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubmed"}, {"relation_type": "prov:used", "source": "pubtator"}]}, {"category": "ProgrammingInterface", "description": "RESTful API providing programmatic access to variant summaries, publications, search, and gene-level variant queries", "format": "http", "id": "litvar.api", "name": "LitVar API", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "litvar"}], "product_url": "https://www.ncbi.nlm.nih.gov/research/litvar2-api/", "secondary_source": [{"relation_type": "prov:wasInformedBy", "source": "clingen"}, {"relation_type": "prov:wasInformedBy", "source": "clinvar"}, {"relation_type": "prov:wasInformedBy", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "pmc"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubmed"}, {"relation_type": "prov:used", "source": "pubtator"}]}, {"category": "ProgrammingInterface", "description": "MarkerDB API documentation and endpoint examples for condition, chemical, genetic, protein, and karyotype biomarker records.", "format": "http", "id": "markerdb.api", "name": "MarkerDB API", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "markerdb"}], "product_url": "https://markerdb.ca/markerdb_api", "secondary_source": [{"relation_type": "prov:wasInformedBy", "source": "dbsnp"}, {"relation_type": "prov:wasInformedBy", "source": "gwascatalog"}, {"relation_type": "prov:wasInformedBy", "source": "hmdb"}, {"relation_type": "prov:wasInformedBy", "source": "omim"}, {"relation_type": "prov:wasInformedBy", "source": "pubchem"}, {"relation_type": "prov:wasInformedBy", "source": "uniprot"}]}, {"category": "Product", "description": "TSV export of MarkerDB genetic biomarkers with associated conditions.", "format": "tsv", "id": "markerdb.sequence_variants.tsv", "name": "MarkerDB Genetic Biomarkers TSV", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "markerdb"}], "product_url": "https://markerdb.ca/pages/download_all_sequence_variants?format=tsv", "secondary_source": [{"relation_type": "prov:wasInformedBy", "source": "dbsnp"}, {"relation_type": "prov:wasInformedBy", "source": "gwascatalog"}, {"relation_type": "prov:wasInformedBy", "source": "omim"}], "warnings": ["File was not able to be retrieved when checked on 2026-06-05: No Content-Length header found"]}], "publications": [{"authors": ["Sherry ST", "Ward MH", "Kholodov M", "Baker J", "Phan L", "Smigielski EM", "Sirotkin K"], "doi": "doi:10.1093/nar/29.1.308", "id": "doi:10.1093/nar/29.1.308", "title": "dbSNP - Database for Single Nucleotide Polymorphisms and Other Classes of Minor Genetic Variation", "year": "2001"}, {"authors": ["Kitts A", "Phan L", "Ward M", "Holmes JB"], "doi": "doi:10.1093/nar/gkad1045", "id": "doi:10.1093/nar/gkad1045", "preferred": true, "title": "The evolution of dbSNP - 25 years of impact in genomic research", "year": "2023"}], "repository": "https://github.com/ncbi/dbsnp", "taxon": ["NCBITaxon:9606"]}