CellMarker
CellMarker is a comprehensive and accurate resource of cell markers for various cell types in tissues of human and mouse. CellMarker 2.0 provides a manually curated collection of 26,915 markers across 2,578 cell types and 656 tissues, resulting in 83,361 tissue-cell type-marker entries, and includes integrated web tools for single-cell data analysis.
[{"category": "Individual", "contact_details": [{"contact_type": "email", "value": "xiaoyun@ems.hrbmu.edu.cn"}], "label": "Yun Xiao"}, {"category": "Organization", "contact_details": [{"contact_type": "url", "value": "https://bio-bigdata.hrbmu.edu.cn/CellMarker/"}], "label": "College of Bioinformatics Science and Technology, Harbin Medical University"}]
[{"category": "Product", "description": "Human CellMarker 2.0 marker dataset in spreadsheet format", "format": "mixed", "id": "cellmarker.human", "name": "Human Cell Markers", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "cellmarker"}], "product_file_size": 7982475, "product_url": "http://117.50.127.228/CellMarker/CellMarker_download_files/file/Cell_marker_Human.xlsx"}, {"category": "Product", "description": "Mouse CellMarker 2.0 marker dataset in spreadsheet format", "format": "mixed", "id": "cellmarker.mouse", "name": "Mouse Cell Markers", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "cellmarker"}], "product_file_size": 3740448, "product_url": "http://117.50.127.228/CellMarker/CellMarker_download_files/file/Cell_marker_Mouse.xlsx"}, {"category": "Product", "description": "CellMarker 2.0 marker dataset derived from single-cell sequencing studies in human and mouse", "format": "mixed", "id": "cellmarker.singlecell", "name": "Single Cell Markers", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "cellmarker"}], "product_file_size": 6005874, "product_url": "http://117.50.127.228/CellMarker/CellMarker_download_files/file/Cell_marker_Seq.xlsx"}, {"category": "Product", "description": "Combined CellMarker 2.0 marker dataset for human and mouse in spreadsheet format", "format": "mixed", "id": "cellmarker.all", "name": "All Cell Markers", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "cellmarker"}], "product_file_size": 10010437, "product_url": "http://117.50.127.228/CellMarker/CellMarker_download_files/file/Cell_marker_All.xlsx"}, {"category": "GraphicalInterface", "description": "CellMarker 2.0 annotation tool for assigning cell types using curated marker genes", "format": "http", "id": "cellmarker.act", "name": "Cell Annotation Tool", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "cellmarker"}], "product_url": "http://117.50.127.228/CellMarker/CellMarker_annotation.jsp"}, {"category": "ProcessProduct", "description": "INDRA CoGEx is a graph database integrating causal relations, ontological relations, properties, and data, assembled at scale automatically from the scientific literature and structured sources. This is the code to build the graph.", "format": "python", "id": "indra.cogex.code", "name": "INDRA CoGEx Build Code", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "nihreporter"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmed"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "cellmarker"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "ccle"}, {"relation_type": "prov:hadPrimarySource", "source": "clinicaltrialsgov"}, {"relation_type": "prov:hadPrimarySource", "source": "indra"}], "product_url": "https://github.com/gyorilab/indra_cogex"}, {"category": "Product", "description": "Harmonizome 3.0 processed dataset downloads, including dataset-specific association files and knowledge graph serialization downloads.", "format": "mixed", "id": "harmonizome.downloads", "name": "Harmonizome Downloads", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "harmonizome"}], "product_url": "https://maayanlab.cloud/Harmonizome/download", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "achilles"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogps"}, {"relation_type": "prov:wasDerivedFrom", "source": "ccle"}, {"relation_type": "prov:wasDerivedFrom", "source": "cellmarker"}, {"relation_type": "prov:wasDerivedFrom", "source": "chea"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "cmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "compartments"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "cosmic"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "depmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "encode"}, {"relation_type": "prov:wasDerivedFrom", "source": "gdsc"}, {"relation_type": "prov:wasDerivedFrom", "source": "geo"}, {"relation_type": "prov:wasDerivedFrom", "source": "glygen"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gtex"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "hpa"}, {"relation_type": "prov:wasDerivedFrom", "source": "hubmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "impc"}, {"relation_type": "prov:wasDerivedFrom", "source": "interpro"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "lincs-l1000"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "motrpac"}, {"relation_type": "prov:wasDerivedFrom", "source": "mp"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pfocr"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "tcga"}, {"relation_type": "prov:wasDerivedFrom", "source": "tissues"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "description": "Neo4j knowledge graph serialization of Harmonizome processed datasets, including genes, attributes, resources, datasets, and gene-attribute associations.", "dump_format": "neo4j", "format": "neo4j", "id": "harmonizome.kg-neo4j", "latest_version": "3.0", "name": "Harmonizome Knowledge Graph Neo4j Database", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "harmonizome"}], "product_url": "https://harmonizome-kg.maayanlab.cloud/", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "achilles"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogps"}, {"relation_type": "prov:wasDerivedFrom", "source": "ccle"}, {"relation_type": "prov:wasDerivedFrom", "source": "cellmarker"}, {"relation_type": "prov:wasDerivedFrom", "source": "chea"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "cmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "compartments"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "cosmic"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "depmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "encode"}, {"relation_type": "prov:wasDerivedFrom", "source": "gdsc"}, {"relation_type": "prov:wasDerivedFrom", "source": "geo"}, {"relation_type": "prov:wasDerivedFrom", "source": "glygen"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gtex"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "hpa"}, {"relation_type": "prov:wasDerivedFrom", "source": "hubmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "impc"}, {"relation_type": "prov:wasDerivedFrom", "source": "interpro"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "lincs-l1000"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "motrpac"}, {"relation_type": "prov:wasDerivedFrom", "source": "mp"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pfocr"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "tcga"}, {"relation_type": "prov:wasDerivedFrom", "source": "tissues"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "description": "Live TRAPI/BioThings metadata endpoint for the Multiomics BigGIM-DrugResponse KP, exposing the multiomics knowledge graph served by the Multiomics Provider (built from GTEx, TCGA, and drug-response data, with additional clinical-trials, drug-approval and knowledge-resource inputs).", "format": "json", "id": "multiomics-kp.graph", "name": "Multiomics KP Knowledge Graph", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "multiomics-kp"}, {"relation_type": "prov:hadPrimarySource", "source": "gtex"}, {"relation_type": "prov:hadPrimarySource", "source": "tcga"}, {"relation_type": "prov:hadPrimarySource", "source": "gdsc"}, {"relation_type": "prov:hadPrimarySource", "source": "clinicaltrialsgov"}, {"relation_type": "prov:hadPrimarySource", "source": "dailymed"}, {"relation_type": "prov:hadPrimarySource", "source": "faers"}], "product_url": "https://biothings.transltr.io/biggim_drugresponse_kp/metadata", "secondary_source": [{"relation_type": "prov:wasInfluencedBy", "source": "aact"}, {"relation_type": "prov:wasInfluencedBy", "source": "biogrid"}, {"relation_type": "prov:wasInfluencedBy", "source": "huri"}, {"relation_type": "prov:wasInfluencedBy", "source": "cellmarker"}, {"relation_type": "prov:wasInfluencedBy", "source": "drugcentral"}, {"relation_type": "prov:wasInfluencedBy", "source": "ttd"}, {"relation_type": "prov:wasInfluencedBy", "source": "pubmed"}]}]
{"activity_status": "active", "category": "DataSource", "contacts": [{"category": "Individual", "contact_details": [{"contact_type": "email", "value": "xiaoyun@ems.hrbmu.edu.cn"}], "label": "Yun Xiao"}, {"category": "Organization", "contact_details": [{"contact_type": "url", "value": "https://bio-bigdata.hrbmu.edu.cn/CellMarker/"}], "label": "College of Bioinformatics Science and Technology, Harbin Medical University"}], "creation_date": "2025-07-20T00:00:00Z", "description": "CellMarker is a comprehensive and accurate resource of cell markers for various cell types in tissues of human and mouse. CellMarker 2.0 provides a manually curated collection of 26,915 markers across 2,578 cell types and 656 tissues, resulting in 83,361 tissue-cell type-marker entries, and includes integrated web tools for single-cell data analysis.", "domains": ["biomedical", "genomics", "biological systems", "organisms"], "homepage_url": "https://bio-bigdata.hrbmu.edu.cn/CellMarker/", "id": "cellmarker", "infores_id": "cellmarker", "last_modified_date": "2026-07-01T00:00:00Z", "layout": "resource_detail", "name": "CellMarker", "products": [{"category": "Product", "description": "Human CellMarker 2.0 marker dataset in spreadsheet format", "format": "mixed", "id": "cellmarker.human", "name": "Human Cell Markers", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "cellmarker"}], "product_file_size": 7982475, "product_url": "http://117.50.127.228/CellMarker/CellMarker_download_files/file/Cell_marker_Human.xlsx"}, {"category": "Product", "description": "Mouse CellMarker 2.0 marker dataset in spreadsheet format", "format": "mixed", "id": "cellmarker.mouse", "name": "Mouse Cell Markers", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "cellmarker"}], "product_file_size": 3740448, "product_url": "http://117.50.127.228/CellMarker/CellMarker_download_files/file/Cell_marker_Mouse.xlsx"}, {"category": "Product", "description": "CellMarker 2.0 marker dataset derived from single-cell sequencing studies in human and mouse", "format": "mixed", "id": "cellmarker.singlecell", "name": "Single Cell Markers", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "cellmarker"}], "product_file_size": 6005874, "product_url": "http://117.50.127.228/CellMarker/CellMarker_download_files/file/Cell_marker_Seq.xlsx"}, {"category": "Product", "description": "Combined CellMarker 2.0 marker dataset for human and mouse in spreadsheet format", "format": "mixed", "id": "cellmarker.all", "name": "All Cell Markers", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "cellmarker"}], "product_file_size": 10010437, "product_url": "http://117.50.127.228/CellMarker/CellMarker_download_files/file/Cell_marker_All.xlsx"}, {"category": "GraphicalInterface", "description": "CellMarker 2.0 annotation tool for assigning cell types using curated marker genes", "format": "http", "id": "cellmarker.act", "name": "Cell Annotation Tool", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "cellmarker"}], "product_url": "http://117.50.127.228/CellMarker/CellMarker_annotation.jsp"}, {"category": "ProcessProduct", "description": "INDRA CoGEx is a graph database integrating causal relations, ontological relations, properties, and data, assembled at scale automatically from the scientific literature and structured sources. This is the code to build the graph.", "format": "python", "id": "indra.cogex.code", "name": "INDRA CoGEx Build Code", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "nihreporter"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmed"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "cellmarker"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "ccle"}, {"relation_type": "prov:hadPrimarySource", "source": "clinicaltrialsgov"}, {"relation_type": "prov:hadPrimarySource", "source": "indra"}], "product_url": "https://github.com/gyorilab/indra_cogex"}, {"category": "Product", "description": "Harmonizome 3.0 processed dataset downloads, including dataset-specific association files and knowledge graph serialization downloads.", "format": "mixed", "id": "harmonizome.downloads", "name": "Harmonizome Downloads", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "harmonizome"}], "product_url": "https://maayanlab.cloud/Harmonizome/download", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "achilles"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogps"}, {"relation_type": "prov:wasDerivedFrom", "source": "ccle"}, {"relation_type": "prov:wasDerivedFrom", "source": "cellmarker"}, {"relation_type": "prov:wasDerivedFrom", "source": "chea"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "cmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "compartments"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "cosmic"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "depmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "encode"}, {"relation_type": "prov:wasDerivedFrom", "source": "gdsc"}, {"relation_type": "prov:wasDerivedFrom", "source": "geo"}, {"relation_type": "prov:wasDerivedFrom", "source": "glygen"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gtex"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "hpa"}, {"relation_type": "prov:wasDerivedFrom", "source": "hubmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "impc"}, {"relation_type": "prov:wasDerivedFrom", "source": "interpro"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "lincs-l1000"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "motrpac"}, {"relation_type": "prov:wasDerivedFrom", "source": "mp"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pfocr"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "tcga"}, {"relation_type": "prov:wasDerivedFrom", "source": "tissues"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "description": "Neo4j knowledge graph serialization of Harmonizome processed datasets, including genes, attributes, resources, datasets, and gene-attribute associations.", "dump_format": "neo4j", "format": "neo4j", "id": "harmonizome.kg-neo4j", "latest_version": "3.0", "name": "Harmonizome Knowledge Graph Neo4j Database", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "harmonizome"}], "product_url": "https://harmonizome-kg.maayanlab.cloud/", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "achilles"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogps"}, {"relation_type": "prov:wasDerivedFrom", "source": "ccle"}, {"relation_type": "prov:wasDerivedFrom", "source": "cellmarker"}, {"relation_type": "prov:wasDerivedFrom", "source": "chea"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "cmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "compartments"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "cosmic"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "depmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "encode"}, {"relation_type": "prov:wasDerivedFrom", "source": "gdsc"}, {"relation_type": "prov:wasDerivedFrom", "source": "geo"}, {"relation_type": "prov:wasDerivedFrom", "source": "glygen"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gtex"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "hpa"}, {"relation_type": "prov:wasDerivedFrom", "source": "hubmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "impc"}, {"relation_type": "prov:wasDerivedFrom", "source": "interpro"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "lincs-l1000"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "motrpac"}, {"relation_type": "prov:wasDerivedFrom", "source": "mp"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pfocr"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "tcga"}, {"relation_type": "prov:wasDerivedFrom", "source": "tissues"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "description": "Live TRAPI/BioThings metadata endpoint for the Multiomics BigGIM-DrugResponse KP, exposing the multiomics knowledge graph served by the Multiomics Provider (built from GTEx, TCGA, and drug-response data, with additional clinical-trials, drug-approval and knowledge-resource inputs).", "format": "json", "id": "multiomics-kp.graph", "name": "Multiomics KP Knowledge Graph", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "multiomics-kp"}, {"relation_type": "prov:hadPrimarySource", "source": "gtex"}, {"relation_type": "prov:hadPrimarySource", "source": "tcga"}, {"relation_type": "prov:hadPrimarySource", "source": "gdsc"}, {"relation_type": "prov:hadPrimarySource", "source": "clinicaltrialsgov"}, {"relation_type": "prov:hadPrimarySource", "source": "dailymed"}, {"relation_type": "prov:hadPrimarySource", "source": "faers"}], "product_url": "https://biothings.transltr.io/biggim_drugresponse_kp/metadata", "secondary_source": [{"relation_type": "prov:wasInfluencedBy", "source": "aact"}, {"relation_type": "prov:wasInfluencedBy", "source": "biogrid"}, {"relation_type": "prov:wasInfluencedBy", "source": "huri"}, {"relation_type": "prov:wasInfluencedBy", "source": "cellmarker"}, {"relation_type": "prov:wasInfluencedBy", "source": "drugcentral"}, {"relation_type": "prov:wasInfluencedBy", "source": "ttd"}, {"relation_type": "prov:wasInfluencedBy", "source": "pubmed"}]}], "publications": [{"authors": ["Hu C", "Li T", "Xu Y", "Zhang X", "Li F", "Bai J", "Chen J", "Jiang W", "Yang K", "Ou Q", "Li X", "Zhang Y"], "doi": "10.1093/nar/gkac947", "id": "doi:10.1093/nar/gkac947", "journal": "Nucleic Acids Research", "preferred": true, "title": "CellMarker 2.0: an updated database of manually curated cell markers in human/mouse and web tools based on scRNA-seq data", "year": "2023"}, {"authors": ["Zhang X", "Lan Y", "Xu J", "Quan F", "Zhao E", "Deng C", "Luo T", "Xu L", "Liao G", "Yan M", "Ping Y", "Li F", "Shi A", "Bai J", "Zhao T", "Li X", "Xiao Y"], "doi": "10.1093/nar/gky900", "id": "doi:10.1093/nar/gky900", "journal": "Nucleic Acids Research", "title": "CellMarker - a manually curated resource of cell markers in human and mouse", "year": "2019"}], "taxon": ["NCBITaxon:9606", "NCBITaxon:10090"]}