OmniPath
OmniPath is a comprehensive prior knowledge resource that integrates molecular interactions and biological pathway information from over 100 original databases and resources. It provides unified access to protein-protein interactions, gene regulatory interactions, enzyme-PTM relationships, protein complexes, protein annotations, and intercellular communication data through multiple interfaces including web services, R/Bioconductor packages, Python clients, and Cytoscape plugins.
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{"authors": ["D\u00e9nes T\u00fcrei", "Alberto Valdeolivas", "Lejla Gul", "Nicol\u00e0s Palacio-Escat", "Michal Klein", "Olga Ivanova", "M\u00e1rton \u00d6lbei", "Attila G\u00e1bor", "Fabian Theis", "Dezs\u0151 M\u00f3dos", "Tam\u00e1s Korcsm\u00e1ros", "Julio Saez-Rodriguez"], "doi": "10.15252/msb.20209923", "id": "doi:10.15252/msb.20209923", "title": "Integrated intra- and intercellular signaling knowledge for multicellular omics analysis", "year": "2021"}], "repository": "https://github.com/saezlab/pypath"}