Pathway Commons
Pathway Commons is a centralized web resource that aggregates biological pathway and molecular interaction data from pathway, interaction, protein, chemical, and identifier-mapping sources into BioPAX and related network formats. Its PC v14 metadata lists 26 datasource rows, 6,692 pathways, 3,579,336 molecular interactions, and 4,168,535 physical entities.
[{"category": "Organization", "contact_details": [{"contact_type": "url", "value": "https://www.mskcc.org/"}], "id": "mskcc", "label": "Memorial Sloan Kettering Cancer Center"}, {"category": "Organization", "contact_details": [{"contact_type": "url", "value": "https://www.utoronto.ca/"}], "id": "utoronto", "label": "University of Toronto"}]
[{"category": "ProgrammingInterface", "description": "RESTful web service API for programmatic access to Pathway Commons PC v14 data with search, pathway retrieval, graph traversal, and network analysis operations.", "format": "http", "id": "pathwaycommons.api", "is_public": true, "name": "Pathway Commons REST API", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_url": "https://www.pathwaycommons.org/pc2/"}, {"category": "GraphicalInterface", "description": "Interactive Pathway Commons web interface for browsing, searching, and visualizing integrated biological pathways and molecular interactions.", "format": "http", "id": "pathwaycommons.web", "is_public": true, "name": "Pathway Commons Web Interface", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_url": "https://www.pathwaycommons.org/"}, {"category": "Product", "description": "Download directory for Pathway Commons PC v14 integrated pathway and molecular interaction datasets, including BioPAX, SIF, GMT, TXT, and JSON-LD products.", "format": "mixed", "id": "pathwaycommons.downloads", "name": "Pathway Commons Data Downloads", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}, {"category": "Product", "compression": "gzip", "description": "PC v14 integrated BioPAX Level 3 unified model containing normalized pathway data, molecular interactions, cross-database entity mappings, and metadata-derived content from 26 datasource rows.", "format": "biopax", "id": "pathwaycommons.biopax", "name": "Integrated BioPAX Model", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_file_size": 1700903742, "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/pc-biopax.owl.gz", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}, {"category": "Product", "compression": "gzip", "description": "PC v14 Simple Interaction Format network file representing binary pairwise molecular relationships integrated from Pathway Commons upstream datasource rows.", "format": "sif", "id": "pathwaycommons.sif", "name": "SIF Network Format", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_file_size": 9810179, "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/pc-hgnc.sif.gz", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}, {"category": "Product", "compression": "gzip", "description": "PC v14 Gene Matrix Transposed gene sets for pathway enrichment analysis, derived from the integrated Pathway Commons pathway archive.", "format": "tsv", "id": "pathwaycommons.gmt", "name": "GMT Gene Set Format", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_file_size": 262513, "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/pc-hgnc.gmt.gz", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}, {"category": "Product", "compression": "gzip", "description": "PC v14 tab-delimited extended SIF node and edge file using HGNC-oriented identifiers for integrated Pathway Commons interactions.", "format": "txt", "id": "pathwaycommons.txt", "name": "Extended SIF TXT Format", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_file_size": 115608500, "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/pc-hgnc.txt.gz", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}, {"category": "DocumentationProduct", "description": "Comprehensive API documentation, data format specifications, and tutorials for using Pathway Commons data and services", "format": "http", "id": "pathwaycommons.documentation", "is_public": true, "name": "Pathway Commons Documentation", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_url": "https://www.pathwaycommons.org/pc2/swagger-ui.html"}, {"category": "GraphProduct", "compression": "gzip", "description": "PharMeBINet V2 JSON release published on February 6, 2024.", "format": "json", "id": "pharmebinet.json", "latest_version": "v2", "name": "PharMeBINet JSON Release", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 1942958027, "product_url": "https://zenodo.org/api/records/17814889/files/pharmebinet_24_02_06.json.gz/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "compression": "zip", "description": "PharMeBINet V2 TSV release published on February 6, 2024.", "format": "tsv", "id": "pharmebinet.tsv", "latest_version": "v2", "name": "PharMeBINet TSV Release", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 1922614551, "product_url": "https://zenodo.org/api/records/17814889/files/pharmebinet_tsv_24_02_06.zip/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "compression": "zip", "description": "PharMeBINet V2 GraphML release published on February 6, 2024.", "format": "mixed", "id": "pharmebinet.graphml", "latest_version": "v2", "name": "PharMeBINet GraphML Release", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 2027519087, "product_url": "https://zenodo.org/api/records/17814889/files/PharMeBiNet_graphml_24_02_06.zip/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "compression": "zip", "description": "PharMeBINet V2 Neo4j database release published on February 6, 2024.", "format": "neo4j", "id": "pharmebinet.neo4j", "latest_version": "v2", "name": "PharMeBINet Neo4j Database", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 3847978577, "product_url": "https://zenodo.org/api/records/17814889/files/pharmebinet_24_02_06.zip/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "compression": "zip", "description": "PharMeBINet V2 Neo4j dump release published on February 6, 2024.", "dump_format": "neo4j", "format": "neo4j", "id": "pharmebinet.neo4j.dump", "latest_version": "v2", "name": "PharMeBINet Neo4j Dump", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 3598325722, "product_url": "https://zenodo.org/api/records/17814889/files/pharmebinet_dump_24_02_06.zip/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "description": "Downloadable GeneMANIA interaction network data organized by release and organism, with individual networks, combined default networks, metadata, and identifier mapping tables in plain tab-delimited text files", "format": "txt", "id": "genemania.networks", "latest_version": "current", "name": "GeneMANIA Interaction Network Archive", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "genemania"}], "product_url": "https://genemania.org/data/current/", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "geo"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "mint"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}]}, {"category": "Product", "description": "Harmonizome 3.0 processed dataset downloads, including dataset-specific association files and knowledge graph serialization downloads.", "format": "mixed", "id": "harmonizome.downloads", "name": "Harmonizome Downloads", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "harmonizome"}], "product_url": "https://maayanlab.cloud/Harmonizome/download", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "achilles"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogps"}, {"relation_type": "prov:wasDerivedFrom", "source": "ccle"}, {"relation_type": "prov:wasDerivedFrom", "source": "cellmarker"}, {"relation_type": "prov:wasDerivedFrom", "source": "chea"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "cmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "compartments"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "cosmic"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "depmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "encode"}, {"relation_type": "prov:wasDerivedFrom", "source": "gdsc"}, {"relation_type": "prov:wasDerivedFrom", "source": "geo"}, {"relation_type": "prov:wasDerivedFrom", "source": "glygen"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gtex"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "hpa"}, {"relation_type": "prov:wasDerivedFrom", "source": "hubmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "impc"}, {"relation_type": "prov:wasDerivedFrom", "source": "interpro"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "lincs-l1000"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "motrpac"}, {"relation_type": "prov:wasDerivedFrom", "source": "mp"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pfocr"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "tcga"}, {"relation_type": "prov:wasDerivedFrom", "source": "tissues"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "description": "Neo4j knowledge graph serialization of Harmonizome processed datasets, including genes, attributes, resources, datasets, and gene-attribute associations.", "dump_format": "neo4j", "format": "neo4j", "id": "harmonizome.kg-neo4j", "latest_version": "3.0", "name": "Harmonizome Knowledge Graph Neo4j Database", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "harmonizome"}], "product_url": "https://harmonizome-kg.maayanlab.cloud/", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "achilles"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogps"}, {"relation_type": "prov:wasDerivedFrom", "source": "ccle"}, {"relation_type": "prov:wasDerivedFrom", "source": "cellmarker"}, {"relation_type": "prov:wasDerivedFrom", "source": "chea"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "cmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "compartments"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "cosmic"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "depmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "encode"}, {"relation_type": "prov:wasDerivedFrom", "source": "gdsc"}, {"relation_type": "prov:wasDerivedFrom", "source": "geo"}, {"relation_type": "prov:wasDerivedFrom", "source": "glygen"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gtex"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "hpa"}, {"relation_type": "prov:wasDerivedFrom", "source": "hubmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "impc"}, {"relation_type": "prov:wasDerivedFrom", "source": "interpro"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "lincs-l1000"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "motrpac"}, {"relation_type": "prov:wasDerivedFrom", "source": "mp"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pfocr"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "tcga"}, {"relation_type": "prov:wasDerivedFrom", "source": "tissues"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphicalInterface", "description": "Web-based interface for searching and browsing comprehensive gene-centric information integrating data from over 200 sources", "format": "http", "id": "genecards.web.interface", "name": "GeneCards Web Interface", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "5srrnadb"}, {"relation_type": "prov:hadPrimarySource", "source": "alliance"}, {"relation_type": "prov:hadPrimarySource", "source": "alphafold"}, {"relation_type": "prov:hadPrimarySource", "source": "aminode"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "biocyc"}, {"relation_type": "prov:hadPrimarySource", "source": "biogps"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "bitterdb"}, {"relation_type": "prov:hadPrimarySource", "source": "cdd"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "civic"}, {"relation_type": "prov:hadPrimarySource", "source": "clinicaltrialsgov"}, {"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "compartments"}, {"relation_type": "prov:hadPrimarySource", "source": "cosmic"}, {"relation_type": "prov:hadPrimarySource", "source": "craft"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "dbsnp"}, {"relation_type": "prov:hadPrimarySource", "source": "dbsuper"}, {"relation_type": "prov:hadPrimarySource", "source": "dgidb"}, {"relation_type": "prov:hadPrimarySource", "source": "dgv"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "ena"}, {"relation_type": "prov:hadPrimarySource", "source": "encode"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "epd"}, {"relation_type": "prov:hadPrimarySource", "source": "fabric"}, {"relation_type": "prov:hadPrimarySource", "source": "fantom5"}, {"relation_type": "prov:hadPrimarySource", "source": "flybase"}, {"relation_type": "prov:hadPrimarySource", "source": "gard"}, {"relation_type": "prov:hadPrimarySource", "source": "gencode"}, {"relation_type": "prov:hadPrimarySource", "source": "genecards"}, {"relation_type": "prov:hadPrimarySource", "source": "geneorganizer"}, {"relation_type": "prov:hadPrimarySource", "source": "genomernai"}, {"relation_type": "prov:hadPrimarySource", "source": "glyconnect"}, {"relation_type": "prov:hadPrimarySource", "source": "glygen"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gtex"}, {"relation_type": "prov:hadPrimarySource", "source": "gtopdb"}, {"relation_type": "prov:hadPrimarySource", "source": "gtrnadb"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "homologene"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "hprd"}, {"relation_type": "prov:hadPrimarySource", "source": "humancyc"}, {"relation_type": "prov:hadPrimarySource", "source": "icd10"}, {"relation_type": "prov:hadPrimarySource", "source": "icd11"}, {"relation_type": "prov:hadPrimarySource", "source": "iid"}, {"relation_type": "prov:hadPrimarySource", "source": "imgt"}, {"relation_type": "prov:hadPrimarySource", "source": "innatedb"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-monarch"}, {"relation_type": "prov:hadPrimarySource", "source": "lncbase"}, {"relation_type": "prov:hadPrimarySource", "source": "lncbook"}, {"relation_type": "prov:hadPrimarySource", "source": "lncipedia"}, {"relation_type": "prov:hadPrimarySource", "source": "lncrnadisease"}, {"relation_type": "prov:hadPrimarySource", "source": "malacards"}, {"relation_type": "prov:hadPrimarySource", "source": "medgen"}, {"relation_type": "prov:hadPrimarySource", "source": "medlineplus"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "mgi"}, {"relation_type": "prov:hadPrimarySource", "source": "mint"}, {"relation_type": "prov:hadPrimarySource", "source": "mirbase"}, {"relation_type": "prov:hadPrimarySource", "source": "mirgenedb"}, {"relation_type": "prov:hadPrimarySource", "source": "mirtarbase"}, {"relation_type": "prov:hadPrimarySource", "source": "modomics"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "ncit"}, {"relation_type": "prov:hadPrimarySource", "source": "nextprot"}, {"relation_type": "prov:hadPrimarySource", "source": "noncode"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}, {"relation_type": "prov:hadPrimarySource", "source": "opentargets"}, {"relation_type": "prov:hadPrimarySource", "source": "orphanet"}, {"relation_type": "prov:hadPrimarySource", "source": "panther"}, {"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}, {"relation_type": "prov:hadPrimarySource", "source": "paxdb"}, {"relation_type": "prov:hadPrimarySource", "source": "pdb"}, {"relation_type": "prov:hadPrimarySource", "source": "pdbe"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "pharmgkb"}, {"relation_type": "prov:hadPrimarySource", "source": "pid"}, {"relation_type": "prov:hadPrimarySource", "source": "pirsf"}, {"relation_type": "prov:hadPrimarySource", "source": "prosite"}, {"relation_type": "prov:hadPrimarySource", "source": "proteomicsdb"}, {"relation_type": "prov:hadPrimarySource", "source": "proteopedia"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmed"}, {"relation_type": "prov:hadPrimarySource", "source": "pubtator"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "rfam"}, {"relation_type": "prov:hadPrimarySource", "source": "rgd"}, {"relation_type": "prov:hadPrimarySource", "source": "rnacentral"}, {"relation_type": "prov:hadPrimarySource", "source": "scop"}, {"relation_type": "prov:hadPrimarySource", "source": "sfld"}, {"relation_type": "prov:hadPrimarySource", "source": "sgd"}, {"relation_type": "prov:hadPrimarySource", "source": "signor"}, {"relation_type": "prov:hadPrimarySource", "source": "silva"}, {"relation_type": "prov:hadPrimarySource", "source": "simap"}, {"relation_type": "prov:hadPrimarySource", "source": "smart"}, {"relation_type": "prov:hadPrimarySource", "source": "snodb"}, {"relation_type": "prov:hadPrimarySource", "source": "snomedct"}, {"relation_type": "prov:hadPrimarySource", "source": "snopy"}, {"relation_type": "prov:hadPrimarySource", "source": "srpdb"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "tair"}, {"relation_type": "prov:hadPrimarySource", "source": "tarbase"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "treefam"}, {"relation_type": "prov:hadPrimarySource", "source": "ttd"}, {"relation_type": "prov:hadPrimarySource", "source": "ucnebase"}, {"relation_type": "prov:hadPrimarySource", "source": "ucsc"}, {"relation_type": "prov:hadPrimarySource", "source": "umls"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "vista"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipedia"}, {"relation_type": "prov:hadPrimarySource", "source": "wormbase"}], "product_url": "https://www.genecards.org/"}, {"category": "GraphProduct", "description": "Integrated rare-disease knowledge graph produced by the RD-Clust workflow, connecting rare diseases to genes, phenotypes, Gene Ontology terms, drugs/ligands, and pathway interactions. Distributed as the processed disease ontograph within the RD-Clust repository.", "format": "http", "id": "ncatsgardkg.graph", "name": "NCATS GARD Knowledge Graph", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "ncatsgardkg"}, {"relation_type": "prov:hadPrimarySource", "source": "gard"}], "product_url": "https://github.com/ncats/RD-Clust/tree/main/data/processed", "secondary_source": [{"relation_type": "prov:wasInfluencedBy", "source": "hp"}, {"relation_type": "prov:wasInfluencedBy", "source": "go"}, {"relation_type": "prov:wasInfluencedBy", "source": "mondo"}, {"relation_type": "prov:wasInfluencedBy", "source": "orphanet"}, {"relation_type": "prov:wasInfluencedBy", "source": "ncbigene"}, {"relation_type": "prov:wasInfluencedBy", "source": "pharos"}, {"relation_type": "prov:wasInfluencedBy", "source": "chembl"}, {"relation_type": "prov:wasInfluencedBy", "source": "chebi"}, {"relation_type": "prov:wasInfluencedBy", "source": "pubchem"}, {"relation_type": "prov:wasInfluencedBy", "source": "pathwaycommons"}]}]
{"activity_status": "active", "category": "Aggregator", "contacts": [{"category": "Organization", "contact_details": [{"contact_type": "url", "value": "https://www.mskcc.org/"}], "id": "mskcc", "label": "Memorial Sloan Kettering Cancer Center"}, {"category": "Organization", "contact_details": [{"contact_type": "url", "value": "https://www.utoronto.ca/"}], "id": "utoronto", "label": "University of Toronto"}], "creation_date": "2026-06-02T00:00:00Z", "description": "Pathway Commons is a centralized web resource that aggregates biological pathway and molecular interaction data from pathway, interaction, protein, chemical, and identifier-mapping sources into BioPAX and related network formats. Its PC v14 metadata lists 26 datasource rows, 6,692 pathways, 3,579,336 molecular interactions, and 4,168,535 physical entities.", "domains": ["pathways", "systems biology", "biomedical"], "homepage_url": "https://www.pathwaycommons.org/", "id": "pathwaycommons", "infores_id": "pathway-commons", "last_modified_date": "2026-06-22T00:00:00Z", "layout": "resource_detail", "license": {"id": "https://creativecommons.org/licenses/by/3.0/", "label": "CC BY 3.0 (aggregated content)", "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png"}, "name": "Pathway Commons", "products": [{"category": "ProgrammingInterface", "description": "RESTful web service API for programmatic access to Pathway Commons PC v14 data with search, pathway retrieval, graph traversal, and network analysis operations.", "format": "http", "id": "pathwaycommons.api", "is_public": true, "name": "Pathway Commons REST API", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_url": "https://www.pathwaycommons.org/pc2/"}, {"category": "GraphicalInterface", "description": "Interactive Pathway Commons web interface for browsing, searching, and visualizing integrated biological pathways and molecular interactions.", "format": "http", "id": "pathwaycommons.web", "is_public": true, "name": "Pathway Commons Web Interface", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_url": "https://www.pathwaycommons.org/"}, {"category": "Product", "description": "Download directory for Pathway Commons PC v14 integrated pathway and molecular interaction datasets, including BioPAX, SIF, GMT, TXT, and JSON-LD products.", "format": "mixed", "id": "pathwaycommons.downloads", "name": "Pathway Commons Data Downloads", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}, {"category": "Product", "compression": "gzip", "description": "PC v14 integrated BioPAX Level 3 unified model containing normalized pathway data, molecular interactions, cross-database entity mappings, and metadata-derived content from 26 datasource rows.", "format": "biopax", "id": "pathwaycommons.biopax", "name": "Integrated BioPAX Model", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_file_size": 1700903742, "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/pc-biopax.owl.gz", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}, {"category": "Product", "compression": "gzip", "description": "PC v14 Simple Interaction Format network file representing binary pairwise molecular relationships integrated from Pathway Commons upstream datasource rows.", "format": "sif", "id": "pathwaycommons.sif", "name": "SIF Network Format", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_file_size": 9810179, "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/pc-hgnc.sif.gz", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}, {"category": "Product", "compression": "gzip", "description": "PC v14 Gene Matrix Transposed gene sets for pathway enrichment analysis, derived from the integrated Pathway Commons pathway archive.", "format": "tsv", "id": "pathwaycommons.gmt", "name": "GMT Gene Set Format", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_file_size": 262513, "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/pc-hgnc.gmt.gz", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}, {"category": "Product", "compression": "gzip", "description": "PC v14 tab-delimited extended SIF node and edge file using HGNC-oriented identifiers for integrated Pathway Commons interactions.", "format": "txt", "id": "pathwaycommons.txt", "name": "Extended SIF TXT Format", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_file_size": 115608500, "product_url": "https://download.baderlab.org/PathwayCommons/PC2/v14/pc-hgnc.txt.gz", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "unichem"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "humancyc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "dip"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "bind"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "reconx"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "inoh"}, {"relation_type": "prov:wasDerivedFrom", "source": "netpath"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "innatedb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biofactoid"}]}, {"category": "DocumentationProduct", "description": "Comprehensive API documentation, data format specifications, and tutorials for using Pathway Commons data and services", "format": "http", "id": "pathwaycommons.documentation", "is_public": true, "name": "Pathway Commons Documentation", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}], "product_url": "https://www.pathwaycommons.org/pc2/swagger-ui.html"}, {"category": "GraphProduct", "compression": "gzip", "description": "PharMeBINet V2 JSON release published on February 6, 2024.", "format": "json", "id": "pharmebinet.json", "latest_version": "v2", "name": "PharMeBINet JSON Release", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 1942958027, "product_url": "https://zenodo.org/api/records/17814889/files/pharmebinet_24_02_06.json.gz/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "compression": "zip", "description": "PharMeBINet V2 TSV release published on February 6, 2024.", "format": "tsv", "id": "pharmebinet.tsv", "latest_version": "v2", "name": "PharMeBINet TSV Release", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 1922614551, "product_url": "https://zenodo.org/api/records/17814889/files/pharmebinet_tsv_24_02_06.zip/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "compression": "zip", "description": "PharMeBINet V2 GraphML release published on February 6, 2024.", "format": "mixed", "id": "pharmebinet.graphml", "latest_version": "v2", "name": "PharMeBINet GraphML Release", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 2027519087, "product_url": "https://zenodo.org/api/records/17814889/files/PharMeBiNet_graphml_24_02_06.zip/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "compression": "zip", "description": "PharMeBINet V2 Neo4j database release published on February 6, 2024.", "format": "neo4j", "id": "pharmebinet.neo4j", "latest_version": "v2", "name": "PharMeBINet Neo4j Database", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 3847978577, "product_url": "https://zenodo.org/api/records/17814889/files/pharmebinet_24_02_06.zip/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "compression": "zip", "description": "PharMeBINet V2 Neo4j dump release published on February 6, 2024.", "dump_format": "neo4j", "format": "neo4j", "id": "pharmebinet.neo4j.dump", "latest_version": "v2", "name": "PharMeBINet Neo4j Dump", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 3598325722, "product_url": "https://zenodo.org/api/records/17814889/files/pharmebinet_dump_24_02_06.zip/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "description": "Downloadable GeneMANIA interaction network data organized by release and organism, with individual networks, combined default networks, metadata, and identifier mapping tables in plain tab-delimited text files", "format": "txt", "id": "genemania.networks", "latest_version": "current", "name": "GeneMANIA Interaction Network Archive", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "genemania"}], "product_url": "https://genemania.org/data/current/", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "geo"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "intact"}, {"relation_type": "prov:wasDerivedFrom", "source": "mint"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}]}, {"category": "Product", "description": "Harmonizome 3.0 processed dataset downloads, including dataset-specific association files and knowledge graph serialization downloads.", "format": "mixed", "id": "harmonizome.downloads", "name": "Harmonizome Downloads", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "harmonizome"}], "product_url": "https://maayanlab.cloud/Harmonizome/download", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "achilles"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogps"}, {"relation_type": "prov:wasDerivedFrom", "source": "ccle"}, {"relation_type": "prov:wasDerivedFrom", "source": "cellmarker"}, {"relation_type": "prov:wasDerivedFrom", "source": "chea"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "cmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "compartments"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "cosmic"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "depmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "encode"}, {"relation_type": "prov:wasDerivedFrom", "source": "gdsc"}, {"relation_type": "prov:wasDerivedFrom", "source": "geo"}, {"relation_type": "prov:wasDerivedFrom", "source": "glygen"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gtex"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "hpa"}, {"relation_type": "prov:wasDerivedFrom", "source": "hubmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "impc"}, {"relation_type": "prov:wasDerivedFrom", "source": "interpro"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "lincs-l1000"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "motrpac"}, {"relation_type": "prov:wasDerivedFrom", "source": "mp"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pfocr"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "tcga"}, {"relation_type": "prov:wasDerivedFrom", "source": "tissues"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "description": "Neo4j knowledge graph serialization of Harmonizome processed datasets, including genes, attributes, resources, datasets, and gene-attribute associations.", "dump_format": "neo4j", "format": "neo4j", "id": "harmonizome.kg-neo4j", "latest_version": "3.0", "name": "Harmonizome Knowledge Graph Neo4j Database", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "harmonizome"}], "product_url": "https://harmonizome-kg.maayanlab.cloud/", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "achilles"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogps"}, {"relation_type": "prov:wasDerivedFrom", "source": "ccle"}, {"relation_type": "prov:wasDerivedFrom", "source": "cellmarker"}, {"relation_type": "prov:wasDerivedFrom", "source": "chea"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "cmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "compartments"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "cosmic"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "depmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "encode"}, {"relation_type": "prov:wasDerivedFrom", "source": "gdsc"}, {"relation_type": "prov:wasDerivedFrom", "source": "geo"}, {"relation_type": "prov:wasDerivedFrom", "source": "glygen"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gtex"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "hpa"}, {"relation_type": "prov:wasDerivedFrom", "source": "hubmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "impc"}, {"relation_type": "prov:wasDerivedFrom", "source": "interpro"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "lincs-l1000"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "motrpac"}, {"relation_type": "prov:wasDerivedFrom", "source": "mp"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pfocr"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "tcga"}, {"relation_type": "prov:wasDerivedFrom", "source": "tissues"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphicalInterface", "description": "Web-based interface for searching and browsing comprehensive gene-centric information integrating data from over 200 sources", "format": "http", "id": "genecards.web.interface", "name": "GeneCards Web Interface", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "5srrnadb"}, {"relation_type": "prov:hadPrimarySource", "source": "alliance"}, {"relation_type": "prov:hadPrimarySource", "source": "alphafold"}, {"relation_type": "prov:hadPrimarySource", "source": "aminode"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "biocyc"}, {"relation_type": "prov:hadPrimarySource", "source": "biogps"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "bitterdb"}, {"relation_type": "prov:hadPrimarySource", "source": "cdd"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "civic"}, {"relation_type": "prov:hadPrimarySource", "source": "clinicaltrialsgov"}, {"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "compartments"}, {"relation_type": "prov:hadPrimarySource", "source": "cosmic"}, {"relation_type": "prov:hadPrimarySource", "source": "craft"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "dbsnp"}, {"relation_type": "prov:hadPrimarySource", "source": "dbsuper"}, {"relation_type": "prov:hadPrimarySource", "source": "dgidb"}, {"relation_type": "prov:hadPrimarySource", "source": "dgv"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "ena"}, {"relation_type": "prov:hadPrimarySource", "source": "encode"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "epd"}, {"relation_type": "prov:hadPrimarySource", "source": "fabric"}, {"relation_type": "prov:hadPrimarySource", "source": "fantom5"}, {"relation_type": "prov:hadPrimarySource", "source": "flybase"}, {"relation_type": "prov:hadPrimarySource", "source": "gard"}, {"relation_type": "prov:hadPrimarySource", "source": "gencode"}, {"relation_type": "prov:hadPrimarySource", "source": "genecards"}, {"relation_type": "prov:hadPrimarySource", "source": "geneorganizer"}, {"relation_type": "prov:hadPrimarySource", "source": "genomernai"}, {"relation_type": "prov:hadPrimarySource", "source": "glyconnect"}, {"relation_type": "prov:hadPrimarySource", "source": "glygen"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gtex"}, {"relation_type": "prov:hadPrimarySource", "source": "gtopdb"}, {"relation_type": "prov:hadPrimarySource", "source": "gtrnadb"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hmdb"}, {"relation_type": "prov:hadPrimarySource", "source": "homologene"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "hprd"}, {"relation_type": "prov:hadPrimarySource", "source": "humancyc"}, {"relation_type": "prov:hadPrimarySource", "source": "icd10"}, {"relation_type": "prov:hadPrimarySource", "source": "icd11"}, {"relation_type": "prov:hadPrimarySource", "source": "iid"}, {"relation_type": "prov:hadPrimarySource", "source": "imgt"}, {"relation_type": "prov:hadPrimarySource", "source": "innatedb"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-monarch"}, {"relation_type": "prov:hadPrimarySource", "source": "lncbase"}, {"relation_type": "prov:hadPrimarySource", "source": "lncbook"}, {"relation_type": "prov:hadPrimarySource", "source": "lncipedia"}, {"relation_type": "prov:hadPrimarySource", "source": "lncrnadisease"}, {"relation_type": "prov:hadPrimarySource", "source": "malacards"}, {"relation_type": "prov:hadPrimarySource", "source": "medgen"}, {"relation_type": "prov:hadPrimarySource", "source": "medlineplus"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "mgi"}, {"relation_type": "prov:hadPrimarySource", "source": "mint"}, {"relation_type": "prov:hadPrimarySource", "source": "mirbase"}, {"relation_type": "prov:hadPrimarySource", "source": "mirgenedb"}, {"relation_type": "prov:hadPrimarySource", "source": "mirtarbase"}, {"relation_type": "prov:hadPrimarySource", "source": "modomics"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "ncit"}, {"relation_type": "prov:hadPrimarySource", "source": "nextprot"}, {"relation_type": "prov:hadPrimarySource", "source": "noncode"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}, {"relation_type": "prov:hadPrimarySource", "source": "opentargets"}, {"relation_type": "prov:hadPrimarySource", "source": "orphanet"}, {"relation_type": "prov:hadPrimarySource", "source": "panther"}, {"relation_type": "prov:hadPrimarySource", "source": "pathwaycommons"}, {"relation_type": "prov:hadPrimarySource", "source": "paxdb"}, {"relation_type": "prov:hadPrimarySource", "source": "pdb"}, {"relation_type": "prov:hadPrimarySource", "source": "pdbe"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "pharmgkb"}, {"relation_type": "prov:hadPrimarySource", "source": "pid"}, {"relation_type": "prov:hadPrimarySource", "source": "pirsf"}, {"relation_type": "prov:hadPrimarySource", "source": "prosite"}, {"relation_type": "prov:hadPrimarySource", "source": "proteomicsdb"}, {"relation_type": "prov:hadPrimarySource", "source": "proteopedia"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmed"}, {"relation_type": "prov:hadPrimarySource", "source": "pubtator"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "rfam"}, {"relation_type": "prov:hadPrimarySource", "source": "rgd"}, {"relation_type": "prov:hadPrimarySource", "source": "rnacentral"}, {"relation_type": "prov:hadPrimarySource", "source": "scop"}, {"relation_type": "prov:hadPrimarySource", "source": "sfld"}, {"relation_type": "prov:hadPrimarySource", "source": "sgd"}, {"relation_type": "prov:hadPrimarySource", "source": "signor"}, {"relation_type": "prov:hadPrimarySource", "source": "silva"}, {"relation_type": "prov:hadPrimarySource", "source": "simap"}, {"relation_type": "prov:hadPrimarySource", "source": "smart"}, {"relation_type": "prov:hadPrimarySource", "source": "snodb"}, {"relation_type": "prov:hadPrimarySource", "source": "snomedct"}, {"relation_type": "prov:hadPrimarySource", "source": "snopy"}, {"relation_type": "prov:hadPrimarySource", "source": "srpdb"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "tair"}, {"relation_type": "prov:hadPrimarySource", "source": "tarbase"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "treefam"}, {"relation_type": "prov:hadPrimarySource", "source": "ttd"}, {"relation_type": "prov:hadPrimarySource", "source": "ucnebase"}, {"relation_type": "prov:hadPrimarySource", "source": "ucsc"}, {"relation_type": "prov:hadPrimarySource", "source": "umls"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "vista"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipedia"}, {"relation_type": "prov:hadPrimarySource", "source": "wormbase"}], "product_url": "https://www.genecards.org/"}, {"category": "GraphProduct", "description": "Integrated rare-disease knowledge graph produced by the RD-Clust workflow, connecting rare diseases to genes, phenotypes, Gene Ontology terms, drugs/ligands, and pathway interactions. Distributed as the processed disease ontograph within the RD-Clust repository.", "format": "http", "id": "ncatsgardkg.graph", "name": "NCATS GARD Knowledge Graph", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "ncatsgardkg"}, {"relation_type": "prov:hadPrimarySource", "source": "gard"}], "product_url": "https://github.com/ncats/RD-Clust/tree/main/data/processed", "secondary_source": [{"relation_type": "prov:wasInfluencedBy", "source": "hp"}, {"relation_type": "prov:wasInfluencedBy", "source": "go"}, {"relation_type": "prov:wasInfluencedBy", "source": "mondo"}, {"relation_type": "prov:wasInfluencedBy", "source": "orphanet"}, {"relation_type": "prov:wasInfluencedBy", "source": "ncbigene"}, {"relation_type": "prov:wasInfluencedBy", "source": "pharos"}, {"relation_type": "prov:wasInfluencedBy", "source": "chembl"}, {"relation_type": "prov:wasInfluencedBy", "source": "chebi"}, {"relation_type": "prov:wasInfluencedBy", "source": "pubchem"}, {"relation_type": "prov:wasInfluencedBy", "source": "pathwaycommons"}]}], "publications": [{"authors": ["Rodchenkov I", "Babur O", "Luna A", "et al."], "doi": "10.1093/nar/gkz946", "id": "doi:10.1093/nar/gkz946", "journal": "Nucleic Acids Research", "preferred": true, "title": "Pathway Commons 2019 Update: integration, analysis and exploration of pathway data", "year": "2019"}, {"authors": ["E. G. Cerami", "B. E. Gross", "E. Demir", "I. Rodchenkov", "O. Babur", "N. Anwar", "N. Schultz", "G. D. Bader", "C. Sander"], "doi": "10.1093/nar/gkq1039", "id": "doi:10.1093/nar/gkq1039", "journal": "Nucleic Acids Research", "title": "Pathway Commons, a web resource for biological pathway data", "year": "2011"}, {"authors": ["Cerami E", "Bader GD", "Gross BE", "Sander C"], "doi": "10.1186/1471-2105-7-497", "id": "doi:10.1186/1471-2105-7-497", "journal": "BMC Bioinformatics", "title": "cPath: open source software for collecting, storing, and querying biological pathways", "year": "2006"}], "repository": "https://github.com/PathwayCommons", "synonyms": ["Pathway Commons", "PathwayCommons", "PC"], "taxon": ["NCBITaxon:9606"], "version": "PC v14"}