iPTMnet
iPTMnet is an integrated resource for protein post-translational modification (PTM) network discovery that employs an integrative bioinformatics approach combining text mining, data mining, and ontological representation to capture rich PTM information, including PTM enzyme-substrate-site relationships, PTM-specific protein-protein interactions (PPIs), and PTM conservation across species.
[]
[{"category": "GraphicalInterface", "description": "iPTMnet web portal for searching PTM proteins, enzymes, substrates, PTM sites, PTM-dependent interactions, literature evidence, and cross-species PTM conservation.", "format": "http", "id": "iptmnet.portal", "license": {"id": "https://creativecommons.org/licenses/by-nc-sa/4.0/", "label": "CC BY-NC-SA 4.0"}, "name": "iPTMnet Web Portal", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "iptmnet"}], "product_url": "https://research.bioinformatics.udel.edu/iptmnet/"}, {"category": "GraphProduct", "description": "Current iPTMnet PTM record table with PTM type, source, UniProt protein, organism, site, enzyme, relation identifiers, and publication evidence.", "format": "tsv", "id": "iptmnet.ptm", "license": {"id": "https://creativecommons.org/licenses/by-nc-sa/4.0/", "label": "CC BY-NC-SA 4.0"}, "name": "iPTMnet PTM Table", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "iptmnet"}], "product_file_size": 44116546, "product_url": "https://research.bioinformatics.udel.edu/iptmnet_data/files/current/ptm.txt", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "dbptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsno"}, {"relation_type": "prov:wasDerivedFrom", "source": "efip"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "nextprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "p3db"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphoelm"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphat"}, {"relation_type": "prov:wasDerivedFrom", "source": "pombase"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubtator"}, {"relation_type": "prov:wasDerivedFrom", "source": "rlims-p"}, {"relation_type": "prov:wasDerivedFrom", "source": "signor"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}]}, {"category": "Product", "description": "Current iPTMnet confidence score table for PTM site records.", "format": "tsv", "id": "iptmnet.score", "license": {"id": "https://creativecommons.org/licenses/by-nc-sa/4.0/", "label": "CC BY-NC-SA 4.0"}, "name": "iPTMnet Score Table", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "iptmnet"}], "product_file_size": 26110370, "product_url": "https://research.bioinformatics.udel.edu/iptmnet_data/files/current/score.txt"}, {"category": "Product", "description": "Current iPTMnet protein table with UniProt accessions, names, organism labels, and reviewed/unreviewed status.", "format": "tsv", "id": "iptmnet.protein", "license": {"id": "https://creativecommons.org/licenses/by-nc-sa/4.0/", "label": "CC BY-NC-SA 4.0"}, "name": "iPTMnet Protein Table", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "iptmnet"}], "product_file_size": 9324847, "product_url": "https://research.bioinformatics.udel.edu/iptmnet_data/files/current/protein.txt", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}]}, {"category": "DocumentationProduct", "description": "README for the current iPTMnet downloadable PTM, score, and protein tables.", "format": "txt", "id": "iptmnet.download.readme", "license": {"id": "https://creativecommons.org/licenses/by-nc-sa/4.0/", "label": "CC BY-NC-SA 4.0"}, "name": "iPTMnet Download README", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "iptmnet"}], "product_file_size": 1892, "product_url": "https://research.bioinformatics.udel.edu/iptmnet_data/files/current/readme.txt"}, {"category": "ProgrammingInterface", "connection_url": "https://research.bioinformatics.udel.edu/iptmnet/api/", "description": "RESTful API for retrieving iPTMnet PTM data, with Swagger documentation and companion R/Python client packages.", "format": "json", "id": "iptmnet.api", "is_public": true, "name": "iPTMnet REST API", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "iptmnet"}], "product_url": "https://research.bioinformatics.udel.edu/iptmnet/api/doc/"}, {"category": "ProgrammingInterface", "description": "R client documentation for accessing the iPTMnet REST API.", "format": "http", "id": "iptmnet.r_client", "is_public": true, "name": "iPTMnetR", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "iptmnet"}], "product_url": "https://udel-cbcb.github.io/iPTMnetR/#/"}, {"category": "ProgrammingInterface", "description": "Python client documentation for accessing the iPTMnet REST API.", "format": "http", "id": "iptmnet.python_client", "is_public": true, "name": "pyiPTMnet", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "iptmnet"}], "product_url": "https://udel-cbcb.github.io/pyiPTMnet/"}, {"category": "GraphicalInterface", "description": "Interactive Shiny web interface for exploring and visualizing human kinase-substrate interactions", "format": "http", "id": "kinace.portal", "name": "KiNet Web Portal", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "kinace"}], "product_url": "https://kinet.kinametrix.com/", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "coralkinome"}, {"relation_type": "prov:wasDerivedFrom", "source": "darkkinasekb"}, {"relation_type": "prov:wasDerivedFrom", "source": "epsd"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "interpro"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "kinhub"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}]}, {"category": "GraphProduct", "description": "iPTMnet protein has site edges", "format": "csv", "id": "prokn.iptmnet.protein.has_site.site.edges", "name": "ProKN iPTMnet Protein Site Edges", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "iptmnet"}, {"relation_type": "prov:hadPrimarySource", "source": "prokn"}], "product_file_size": 34132692, "product_url": "https://research.bioinformatics.udel.edu/prokn_dp/downloads/current/iPTMnet.Protein.HAS_SITE.Site.edges.csv"}, {"category": "GraphProduct", "description": "iPTMnet protein catalyzes PTM site edges", "format": "csv", "id": "prokn.iptmnet.protein.catalyzes.ptmsite.edges", "name": "ProKN iPTMnet Protein Catalyzes PTM Site Edges", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "iptmnet"}, {"relation_type": "prov:hadPrimarySource", "source": "prokn"}], "product_file_size": 4049194, "product_url": "https://research.bioinformatics.udel.edu/prokn_dp/downloads/current/iPTMnet.Protein.CATALYZES.PTMSite.edges.csv"}, {"category": "GraphProduct", "compression": "gzip", "description": "PharMeBINet V2 JSON release published on February 6, 2024.", "format": "json", "id": "pharmebinet.json", "latest_version": "v2", "name": "PharMeBINet JSON Release", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 1942958027, "product_url": "https://zenodo.org/api/records/17814889/files/pharmebinet_24_02_06.json.gz/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "compression": "zip", "description": "PharMeBINet V2 TSV release published on February 6, 2024.", "format": "tsv", "id": "pharmebinet.tsv", "latest_version": "v2", "name": "PharMeBINet TSV Release", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 1922614551, "product_url": "https://zenodo.org/api/records/17814889/files/pharmebinet_tsv_24_02_06.zip/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "compression": "zip", "description": "PharMeBINet V2 GraphML release published on February 6, 2024.", "format": "mixed", "id": "pharmebinet.graphml", "latest_version": "v2", "name": "PharMeBINet GraphML Release", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 2027519087, "product_url": "https://zenodo.org/api/records/17814889/files/PharMeBiNet_graphml_24_02_06.zip/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "compression": "zip", "description": "PharMeBINet V2 Neo4j database release published on February 6, 2024.", "format": "neo4j", "id": "pharmebinet.neo4j", "latest_version": "v2", "name": "PharMeBINet Neo4j Database", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 3847978577, "product_url": "https://zenodo.org/api/records/17814889/files/pharmebinet_24_02_06.zip/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "compression": "zip", "description": "PharMeBINet V2 Neo4j dump release published on February 6, 2024.", "dump_format": "neo4j", "format": "neo4j", "id": "pharmebinet.neo4j.dump", "latest_version": "v2", "name": "PharMeBINet Neo4j Dump", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 3598325722, "product_url": "https://zenodo.org/api/records/17814889/files/pharmebinet_dump_24_02_06.zip/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "Product", "description": "Download page for complete phosphorylation site datasets and annotation data from EPSD 2.0", "format": "http", "id": "epsd.download", "name": "EPSD Data Download", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "epsd"}], "product_url": "https://epsd.biocuckoo.cn/Download.php", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}]}, {"category": "GraphProduct", "description": "CSV download of the full KiNet human kinase-substrate interaction dataset with source database, evidence, and PMID reference fields", "format": "csv", "id": "kinace.interactions", "name": "KiNet Full Interaction Dataset", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "kinace"}], "product_file_size": 5180792, "product_url": "https://raw.githubusercontent.com/GauravPandeyLab/KiNet/master/data/ksi_source_full_dataset.csv", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "epsd"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}]}]
{"activity_status": "active", "category": "DataSource", "creation_date": "2025-11-13T00:00:00Z", "description": "iPTMnet is an integrated resource for protein post-translational modification (PTM) network discovery that employs an integrative bioinformatics approach combining text mining, data mining, and ontological representation to capture rich PTM information, including PTM enzyme-substrate-site relationships, PTM-specific protein-protein interactions (PPIs), and PTM conservation across species.", "domains": ["proteomics"], "homepage_url": "https://research.bioinformatics.udel.edu/iptmnet/", "id": "iptmnet", "infores_id": "iptmnet", "last_modified_date": "2026-06-02T00:00:00Z", "layout": "resource_detail", "license": {"id": "https://creativecommons.org/licenses/by-nc-sa/4.0/", "label": "CC BY-NC-SA 4.0"}, "name": "iPTMnet", "products": [{"category": "GraphicalInterface", "description": "iPTMnet web portal for searching PTM proteins, enzymes, substrates, PTM sites, PTM-dependent interactions, literature evidence, and cross-species PTM conservation.", "format": "http", "id": "iptmnet.portal", "license": {"id": "https://creativecommons.org/licenses/by-nc-sa/4.0/", "label": "CC BY-NC-SA 4.0"}, "name": "iPTMnet Web Portal", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "iptmnet"}], "product_url": "https://research.bioinformatics.udel.edu/iptmnet/"}, {"category": "GraphProduct", "description": "Current iPTMnet PTM record table with PTM type, source, UniProt protein, organism, site, enzyme, relation identifiers, and publication evidence.", "format": "tsv", "id": "iptmnet.ptm", "license": {"id": "https://creativecommons.org/licenses/by-nc-sa/4.0/", "label": "CC BY-NC-SA 4.0"}, "name": "iPTMnet PTM Table", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "iptmnet"}], "product_file_size": 44116546, "product_url": "https://research.bioinformatics.udel.edu/iptmnet_data/files/current/ptm.txt", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "dbptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsno"}, {"relation_type": "prov:wasDerivedFrom", "source": "efip"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "nextprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "p3db"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphoelm"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphat"}, {"relation_type": "prov:wasDerivedFrom", "source": "pombase"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubtator"}, {"relation_type": "prov:wasDerivedFrom", "source": "rlims-p"}, {"relation_type": "prov:wasDerivedFrom", "source": "signor"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}]}, {"category": "Product", "description": "Current iPTMnet confidence score table for PTM site records.", "format": "tsv", "id": "iptmnet.score", "license": {"id": "https://creativecommons.org/licenses/by-nc-sa/4.0/", "label": "CC BY-NC-SA 4.0"}, "name": "iPTMnet Score Table", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "iptmnet"}], "product_file_size": 26110370, "product_url": "https://research.bioinformatics.udel.edu/iptmnet_data/files/current/score.txt"}, {"category": "Product", "description": "Current iPTMnet protein table with UniProt accessions, names, organism labels, and reviewed/unreviewed status.", "format": "tsv", "id": "iptmnet.protein", "license": {"id": "https://creativecommons.org/licenses/by-nc-sa/4.0/", "label": "CC BY-NC-SA 4.0"}, "name": "iPTMnet Protein Table", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "iptmnet"}], "product_file_size": 9324847, "product_url": "https://research.bioinformatics.udel.edu/iptmnet_data/files/current/protein.txt", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}]}, {"category": "DocumentationProduct", "description": "README for the current iPTMnet downloadable PTM, score, and protein tables.", "format": "txt", "id": "iptmnet.download.readme", "license": {"id": "https://creativecommons.org/licenses/by-nc-sa/4.0/", "label": "CC BY-NC-SA 4.0"}, "name": "iPTMnet Download README", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "iptmnet"}], "product_file_size": 1892, "product_url": "https://research.bioinformatics.udel.edu/iptmnet_data/files/current/readme.txt"}, {"category": "ProgrammingInterface", "connection_url": "https://research.bioinformatics.udel.edu/iptmnet/api/", "description": "RESTful API for retrieving iPTMnet PTM data, with Swagger documentation and companion R/Python client packages.", "format": "json", "id": "iptmnet.api", "is_public": true, "name": "iPTMnet REST API", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "iptmnet"}], "product_url": "https://research.bioinformatics.udel.edu/iptmnet/api/doc/"}, {"category": "ProgrammingInterface", "description": "R client documentation for accessing the iPTMnet REST API.", "format": "http", "id": "iptmnet.r_client", "is_public": true, "name": "iPTMnetR", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "iptmnet"}], "product_url": "https://udel-cbcb.github.io/iPTMnetR/#/"}, {"category": "ProgrammingInterface", "description": "Python client documentation for accessing the iPTMnet REST API.", "format": "http", "id": "iptmnet.python_client", "is_public": true, "name": "pyiPTMnet", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "iptmnet"}], "product_url": "https://udel-cbcb.github.io/pyiPTMnet/"}, {"category": "GraphicalInterface", "description": "Interactive Shiny web interface for exploring and visualizing human kinase-substrate interactions", "format": "http", "id": "kinace.portal", "name": "KiNet Web Portal", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "kinace"}], "product_url": "https://kinet.kinametrix.com/", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "coralkinome"}, {"relation_type": "prov:wasDerivedFrom", "source": "darkkinasekb"}, {"relation_type": "prov:wasDerivedFrom", "source": "epsd"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "interpro"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "kinhub"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}]}, {"category": "GraphProduct", "description": "iPTMnet protein has site edges", "format": "csv", "id": "prokn.iptmnet.protein.has_site.site.edges", "name": "ProKN iPTMnet Protein Site Edges", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "iptmnet"}, {"relation_type": "prov:hadPrimarySource", "source": "prokn"}], "product_file_size": 34132692, "product_url": "https://research.bioinformatics.udel.edu/prokn_dp/downloads/current/iPTMnet.Protein.HAS_SITE.Site.edges.csv"}, {"category": "GraphProduct", "description": "iPTMnet protein catalyzes PTM site edges", "format": "csv", "id": "prokn.iptmnet.protein.catalyzes.ptmsite.edges", "name": "ProKN iPTMnet Protein Catalyzes PTM Site Edges", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "iptmnet"}, {"relation_type": "prov:hadPrimarySource", "source": "prokn"}], "product_file_size": 4049194, "product_url": "https://research.bioinformatics.udel.edu/prokn_dp/downloads/current/iPTMnet.Protein.CATALYZES.PTMSite.edges.csv"}, {"category": "GraphProduct", "compression": "gzip", "description": "PharMeBINet V2 JSON release published on February 6, 2024.", "format": "json", "id": "pharmebinet.json", "latest_version": "v2", "name": "PharMeBINet JSON Release", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 1942958027, "product_url": "https://zenodo.org/api/records/17814889/files/pharmebinet_24_02_06.json.gz/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "compression": "zip", "description": "PharMeBINet V2 TSV release published on February 6, 2024.", "format": "tsv", "id": "pharmebinet.tsv", "latest_version": "v2", "name": "PharMeBINet TSV Release", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 1922614551, "product_url": "https://zenodo.org/api/records/17814889/files/pharmebinet_tsv_24_02_06.zip/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "compression": "zip", "description": "PharMeBINet V2 GraphML release published on February 6, 2024.", "format": "mixed", "id": "pharmebinet.graphml", "latest_version": "v2", "name": "PharMeBINet GraphML Release", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 2027519087, "product_url": "https://zenodo.org/api/records/17814889/files/PharMeBiNet_graphml_24_02_06.zip/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "compression": "zip", "description": "PharMeBINet V2 Neo4j database release published on February 6, 2024.", "format": "neo4j", "id": "pharmebinet.neo4j", "latest_version": "v2", "name": "PharMeBINet Neo4j Database", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 3847978577, "product_url": "https://zenodo.org/api/records/17814889/files/pharmebinet_24_02_06.zip/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "compression": "zip", "description": "PharMeBINet V2 Neo4j dump release published on February 6, 2024.", "dump_format": "neo4j", "format": "neo4j", "id": "pharmebinet.neo4j.dump", "latest_version": "v2", "name": "PharMeBINet Neo4j Dump", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmebinet"}], "product_file_size": 3598325722, "product_url": "https://zenodo.org/api/records/17814889/files/pharmebinet_dump_24_02_06.zip/content", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "adrecs"}, {"relation_type": "prov:wasDerivedFrom", "source": "aelous"}, {"relation_type": "prov:wasDerivedFrom", "source": "atc"}, {"relation_type": "prov:wasDerivedFrom", "source": "bindingdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "cl"}, {"relation_type": "prov:wasDerivedFrom", "source": "chebi"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsnp"}, {"relation_type": "prov:wasDerivedFrom", "source": "ddinter"}, {"relation_type": "prov:wasDerivedFrom", "source": "doid"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugcentral"}, {"relation_type": "prov:wasDerivedFrom", "source": "efo"}, {"relation_type": "prov:wasDerivedFrom", "source": "fideo"}, {"relation_type": "prov:wasDerivedFrom", "source": "foodon"}, {"relation_type": "prov:wasDerivedFrom", "source": "gencc"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hetionet"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "hippie"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "iid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "markerdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "med-rt"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "mondo"}, {"relation_type": "prov:wasDerivedFrom", "source": "ncbigene"}, {"relation_type": "prov:wasDerivedFrom", "source": "ndfrt"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pharmgkb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ptmd"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubchem"}, {"relation_type": "prov:wasDerivedFrom", "source": "qptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "refseq"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnadisease"}, {"relation_type": "prov:wasDerivedFrom", "source": "rnainter"}, {"relation_type": "prov:wasDerivedFrom", "source": "sider"}, {"relation_type": "prov:wasDerivedFrom", "source": "smpdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "ttd"}, {"relation_type": "prov:wasDerivedFrom", "source": "uberon"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "Product", "description": "Download page for complete phosphorylation site datasets and annotation data from EPSD 2.0", "format": "http", "id": "epsd.download", "name": "EPSD Data Download", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "epsd"}], "product_url": "https://epsd.biocuckoo.cn/Download.php", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}]}, {"category": "GraphProduct", "description": "CSV download of the full KiNet human kinase-substrate interaction dataset with source database, evidence, and PMID reference fields", "format": "csv", "id": "kinace.interactions", "name": "KiNet Full Interaction Dataset", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "kinace"}], "product_file_size": 5180792, "product_url": "https://raw.githubusercontent.com/GauravPandeyLab/KiNet/master/data/ksi_source_full_dataset.csv", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "epsd"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}]}], "publications": [{"authors": ["Hongzhan Huang", "Cecilia N Arighi", "Karen E Ross", "Jia Ren", "Gang Li", "Sheng-Chih Chen", "Qinghua Wang", "Julie Cowart", "K Vijay-Shanker", "Cathy H Wu"], "doi": "10.1093/nar/gkx1104", "id": "doi:10.1093/nar/gkx1104", "journal": "Nucleic Acids Research", "preferred": true, "title": "iPTMnet: an integrated resource for protein post-translational modification network discovery", "year": "2018"}], "synonyms": []}