Environment Ontology
An ontology of environmental systems, components, and processes.
[{"category": "Individual", "contact_details": [{"contact_type": "email", "value": "pier.buttigieg@awi.de"}, {"contact_type": "github", "value": "pbuttigieg"}], "label": "Pier Luigi Buttigieg", "orcid": "0000-0002-4366-3088"}]
[{"category": "OntologyProduct", "description": "main ENVO OWL release", "format": "owl", "id": "envo.owl", "name": "main ENVO OWL release", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "envo"}], "product_file_size": 819909, "product_url": "http://purl.obolibrary.org/obo/envo.owl"}, {"category": "OntologyProduct", "description": "ENVO in obographs JSON format", "format": "json", "id": "envo.json", "name": "ENVO in obographs JSON format", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "envo"}], "product_file_size": 653600, "product_url": "http://purl.obolibrary.org/obo/envo.json"}, {"category": "OntologyProduct", "description": "ENVO in OBO Format. May be lossy", "format": "obo", "id": "envo.obo", "name": "ENVO in OBO Format. May be lossy", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "envo"}], "product_file_size": 595276, "product_url": "http://purl.obolibrary.org/obo/envo.obo"}, {"category": "OntologyProduct", "description": "OBO-Basic edition of ENVO", "format": "obo", "id": "envo.subsets.envo-basic.obo", "name": "OBO-Basic edition of ENVO", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "envo"}], "product_file_size": 422465, "product_url": "http://purl.obolibrary.org/obo/envo/subsets/envo-basic.obo"}, {"category": "OntologyProduct", "description": "Earth Microbiome Project subset", "format": "owl", "id": "envo.subsets.envoEmpo.owl", "name": "Earth Microbiome Project subset", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "envo"}], "product_file_size": 19016, "product_url": "http://purl.obolibrary.org/obo/envo/subsets/envoEmpo.owl"}, {"category": "OntologyProduct", "description": "GSC Lite subset of ENVO", "format": "obo", "id": "envo.subsets.EnvO-Lite-GSC.obo", "name": "GSC Lite subset of ENVO", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "envo"}], "product_file_size": 12912, "product_url": "http://purl.obolibrary.org/obo/envo/subsets/EnvO-Lite-GSC.obo"}, {"category": "GraphProduct", "compression": "targz", "description": "Raw source files for all KG-Microbe framework transforms (all 4 KGs)", "format": "kgx", "id": "kg-microbe.graph.raw", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0 1.0"}, "name": "KG-Microbe KGX Graph - Raw", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bacdive"}, {"relation_type": "prov:hadPrimarySource", "source": "bactotraits"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "disbiome"}, {"relation_type": "prov:hadPrimarySource", "source": "ec"}, {"relation_type": "prov:hadPrimarySource", "source": "envo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-microbe"}, {"relation_type": "prov:hadPrimarySource", "source": "mediadive"}, {"relation_type": "prov:hadPrimarySource", "source": "metpo"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "rhea"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}], "product_file_size": 12464495186, "product_url": "https://portal.nersc.gov/project/m4689/KGMicrobe-raw-20250222.tar.gz"}, {"category": "GraphProduct", "compression": "targz", "description": "The core KG KG-Microbe-Core with ontologies, organismal traits, and growth preferences.", "format": "kgx", "id": "kg-microbe.graph.core", "name": "KG-Microbe KGX Graph - Core", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bacdive"}, {"relation_type": "prov:hadPrimarySource", "source": "bactotraits"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "disbiome"}, {"relation_type": "prov:hadPrimarySource", "source": "ec"}, {"relation_type": "prov:hadPrimarySource", "source": "envo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-microbe"}, {"relation_type": "prov:hadPrimarySource", "source": "mediadive"}, {"relation_type": "prov:hadPrimarySource", "source": "metpo"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "rhea"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}], "product_url": "https://github.com/Knowledge-Graph-Hub/kg-microbe/releases/latest"}, {"category": "GraphProduct", "compression": "targz", "description": "Core plus human biomedical data (ontologies, CTD, Wallen et al)", "format": "kgx", "id": "kg-microbe.graph.biomedical", "name": "KG-Microbe KGX Graph - Biomedical", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bacdive"}, {"relation_type": "prov:hadPrimarySource", "source": "bactotraits"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "disbiome"}, {"relation_type": "prov:hadPrimarySource", "source": "ec"}, {"relation_type": "prov:hadPrimarySource", "source": "envo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-microbe"}, {"relation_type": "prov:hadPrimarySource", "source": "mediadive"}, {"relation_type": "prov:hadPrimarySource", "source": "metpo"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "rhea"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}], "product_url": "https://github.com/Knowledge-Graph-Hub/kg-microbe/releases/latest"}, {"category": "GraphProduct", "compression": "targz", "description": "Core plus Uniprot genome annotations", "format": "kgx", "id": "kg-microbe.graph.function", "name": "KG-Microbe KGX Graph - Function", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bacdive"}, {"relation_type": "prov:hadPrimarySource", "source": "bactotraits"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "disbiome"}, {"relation_type": "prov:hadPrimarySource", "source": "ec"}, {"relation_type": "prov:hadPrimarySource", "source": "envo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-microbe"}, {"relation_type": "prov:hadPrimarySource", "source": "mediadive"}, {"relation_type": "prov:hadPrimarySource", "source": "metpo"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "rhea"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}], "product_file_size": 4623010863, "product_url": "https://portal.nersc.gov/project/m4689/KGMicrobe-function-20250222.tar.gz"}, {"category": "GraphProduct", "compression": "targz", "description": "Biomedical plus Uniprot genome annotations", "format": "kgx", "id": "kg-microbe.graph.biomedical-function", "name": "KG-Microbe KGX Graph - Biomedical-Function", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bacdive"}, {"relation_type": "prov:hadPrimarySource", "source": "bactotraits"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "disbiome"}, {"relation_type": "prov:hadPrimarySource", "source": "ec"}, {"relation_type": "prov:hadPrimarySource", "source": "envo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-microbe"}, {"relation_type": "prov:hadPrimarySource", "source": "mediadive"}, {"relation_type": "prov:hadPrimarySource", "source": "metpo"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "rhea"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}], "product_file_size": 4640682152, "product_url": "https://portal.nersc.gov/project/m4689/KGMicrobe-biomedical-function-20250222.tar.gz"}, {"category": "GraphProduct", "description": "RDF knowledge graph materialized by the MetaBoKG workflow from public metabolomics repository outputs, GNPS molecular-networking jobs, annotation evidence, sample metadata, and environmental and taxonomic context. The repository documents generated per-job Turtle files under mapping/kg and loading into Virtuoso named graphs.", "id": "metabokg.graph", "latest_version": "arXiv v1 demonstration", "name": "MetaboKG RDF Graph", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "metabokg"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmed"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmedcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "gnps"}, {"relation_type": "prov:hadPrimarySource", "source": "massive"}, {"relation_type": "prov:hadPrimarySource", "source": "redu"}], "product_url": "https://github.com/HolobiomicsLab/MetaBoKG", "secondary_source": [{"relation_type": "prov:used", "source": "ms"}, {"relation_type": "prov:used", "source": "chebi"}, {"relation_type": "prov:used", "source": "ncbitaxon"}, {"relation_type": "prov:used", "source": "envo"}, {"relation_type": "prov:used", "source": "ncit"}, {"relation_type": "prov:used", "source": "uberon"}, {"relation_type": "prov:used", "source": "chmo"}, {"relation_type": "prov:used", "source": "sio"}, {"relation_type": "prov:used", "source": "prov-o"}, {"relation_type": "prov:used", "source": "dcat"}, {"relation_type": "prov:used", "source": "afo"}], "warnings": ["No static public graph release or hosted endpoint was available in the GitHub repository when curated on 2026-06-02; the repository documents local Turtle materialization and Virtuoso loading."]}, {"category": "DataModelProduct", "description": "Turtle schema files defining MetaBoKG classes, properties, and ReDU class hierarchies used by the generated knowledge graph.", "id": "metabokg.schema", "license": {"id": "https://www.apache.org/licenses/LICENSE-2.0", "label": "Apache License 2.0"}, "name": "MetaBoKG RDF Schema", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "metabokg"}], "product_url": "https://github.com/HolobiomicsLab/MetaBoKG/tree/main/Schema", "secondary_source": [{"relation_type": "prov:wasInformedBy", "source": "ms"}, {"relation_type": "prov:wasInformedBy", "source": "chebi"}, {"relation_type": "prov:wasInformedBy", "source": "ncbitaxon"}, {"relation_type": "prov:wasInformedBy", "source": "envo"}, {"relation_type": "prov:wasInformedBy", "source": "ncit"}, {"relation_type": "prov:wasInformedBy", "source": "uberon"}, {"relation_type": "prov:wasInformedBy", "source": "chmo"}, {"relation_type": "prov:wasInformedBy", "source": "sio"}, {"relation_type": "prov:wasInformedBy", "source": "prov-o"}, {"relation_type": "prov:wasInformedBy", "source": "dcat"}, {"relation_type": "prov:wasInformedBy", "source": "afo"}]}]
{"activity_status": "active", "category": "Ontology", "collection": ["obo-foundry"], "contacts": [{"category": "Individual", "contact_details": [{"contact_type": "email", "value": "pier.buttigieg@awi.de"}, {"contact_type": "github", "value": "pbuttigieg"}], "label": "Pier Luigi Buttigieg", "orcid": "0000-0002-4366-3088"}], "creation_date": "2025-07-10T00:00:00Z", "description": "An ontology of environmental systems, components, and processes.", "domains": ["environment"], "homepage_url": "http://environmentontology.org/", "id": "envo", "last_modified_date": "2026-04-15T00:00:00Z", "layout": "resource_detail", "license": {"id": "http://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0 1.0", "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png"}, "name": "Environment Ontology", "products": [{"category": "OntologyProduct", "description": "main ENVO OWL release", "format": "owl", "id": "envo.owl", "name": "main ENVO OWL release", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "envo"}], "product_file_size": 819909, "product_url": "http://purl.obolibrary.org/obo/envo.owl"}, {"category": "OntologyProduct", "description": "ENVO in obographs JSON format", "format": "json", "id": "envo.json", "name": "ENVO in obographs JSON format", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "envo"}], "product_file_size": 653600, "product_url": "http://purl.obolibrary.org/obo/envo.json"}, {"category": "OntologyProduct", "description": "ENVO in OBO Format. May be lossy", "format": "obo", "id": "envo.obo", "name": "ENVO in OBO Format. May be lossy", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "envo"}], "product_file_size": 595276, "product_url": "http://purl.obolibrary.org/obo/envo.obo"}, {"category": "OntologyProduct", "description": "OBO-Basic edition of ENVO", "format": "obo", "id": "envo.subsets.envo-basic.obo", "name": "OBO-Basic edition of ENVO", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "envo"}], "product_file_size": 422465, "product_url": "http://purl.obolibrary.org/obo/envo/subsets/envo-basic.obo"}, {"category": "OntologyProduct", "description": "Earth Microbiome Project subset", "format": "owl", "id": "envo.subsets.envoEmpo.owl", "name": "Earth Microbiome Project subset", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "envo"}], "product_file_size": 19016, "product_url": "http://purl.obolibrary.org/obo/envo/subsets/envoEmpo.owl"}, {"category": "OntologyProduct", "description": "GSC Lite subset of ENVO", "format": "obo", "id": "envo.subsets.EnvO-Lite-GSC.obo", "name": "GSC Lite subset of ENVO", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "envo"}], "product_file_size": 12912, "product_url": "http://purl.obolibrary.org/obo/envo/subsets/EnvO-Lite-GSC.obo"}, {"category": "GraphProduct", "compression": "targz", "description": "Raw source files for all KG-Microbe framework transforms (all 4 KGs)", "format": "kgx", "id": "kg-microbe.graph.raw", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0 1.0"}, "name": "KG-Microbe KGX Graph - Raw", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bacdive"}, {"relation_type": "prov:hadPrimarySource", "source": "bactotraits"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "disbiome"}, {"relation_type": "prov:hadPrimarySource", "source": "ec"}, {"relation_type": "prov:hadPrimarySource", "source": "envo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-microbe"}, {"relation_type": "prov:hadPrimarySource", "source": "mediadive"}, {"relation_type": "prov:hadPrimarySource", "source": "metpo"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "rhea"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}], "product_file_size": 12464495186, "product_url": "https://portal.nersc.gov/project/m4689/KGMicrobe-raw-20250222.tar.gz"}, {"category": "GraphProduct", "compression": "targz", "description": "The core KG KG-Microbe-Core with ontologies, organismal traits, and growth preferences.", "format": "kgx", "id": "kg-microbe.graph.core", "name": "KG-Microbe KGX Graph - Core", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bacdive"}, {"relation_type": "prov:hadPrimarySource", "source": "bactotraits"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "disbiome"}, {"relation_type": "prov:hadPrimarySource", "source": "ec"}, {"relation_type": "prov:hadPrimarySource", "source": "envo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-microbe"}, {"relation_type": "prov:hadPrimarySource", "source": "mediadive"}, {"relation_type": "prov:hadPrimarySource", "source": "metpo"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "rhea"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}], "product_url": "https://github.com/Knowledge-Graph-Hub/kg-microbe/releases/latest"}, {"category": "GraphProduct", "compression": "targz", "description": "Core plus human biomedical data (ontologies, CTD, Wallen et al)", "format": "kgx", "id": "kg-microbe.graph.biomedical", "name": "KG-Microbe KGX Graph - Biomedical", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bacdive"}, {"relation_type": "prov:hadPrimarySource", "source": "bactotraits"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "disbiome"}, {"relation_type": "prov:hadPrimarySource", "source": "ec"}, {"relation_type": "prov:hadPrimarySource", "source": "envo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-microbe"}, {"relation_type": "prov:hadPrimarySource", "source": "mediadive"}, {"relation_type": "prov:hadPrimarySource", "source": "metpo"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "rhea"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}], "product_url": "https://github.com/Knowledge-Graph-Hub/kg-microbe/releases/latest"}, {"category": "GraphProduct", "compression": "targz", "description": "Core plus Uniprot genome annotations", "format": "kgx", "id": "kg-microbe.graph.function", "name": "KG-Microbe KGX Graph - Function", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bacdive"}, {"relation_type": "prov:hadPrimarySource", "source": "bactotraits"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "disbiome"}, {"relation_type": "prov:hadPrimarySource", "source": "ec"}, {"relation_type": "prov:hadPrimarySource", "source": "envo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-microbe"}, {"relation_type": "prov:hadPrimarySource", "source": "mediadive"}, {"relation_type": "prov:hadPrimarySource", "source": "metpo"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "rhea"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}], "product_file_size": 4623010863, "product_url": "https://portal.nersc.gov/project/m4689/KGMicrobe-function-20250222.tar.gz"}, {"category": "GraphProduct", "compression": "targz", "description": "Biomedical plus Uniprot genome annotations", "format": "kgx", "id": "kg-microbe.graph.biomedical-function", "name": "KG-Microbe KGX Graph - Biomedical-Function", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bacdive"}, {"relation_type": "prov:hadPrimarySource", "source": "bactotraits"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "disbiome"}, {"relation_type": "prov:hadPrimarySource", "source": "ec"}, {"relation_type": "prov:hadPrimarySource", "source": "envo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-microbe"}, {"relation_type": "prov:hadPrimarySource", "source": "mediadive"}, {"relation_type": "prov:hadPrimarySource", "source": "metpo"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "rhea"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}], "product_file_size": 4640682152, "product_url": "https://portal.nersc.gov/project/m4689/KGMicrobe-biomedical-function-20250222.tar.gz"}, {"category": "GraphProduct", "description": "RDF knowledge graph materialized by the MetaBoKG workflow from public metabolomics repository outputs, GNPS molecular-networking jobs, annotation evidence, sample metadata, and environmental and taxonomic context. The repository documents generated per-job Turtle files under mapping/kg and loading into Virtuoso named graphs.", "id": "metabokg.graph", "latest_version": "arXiv v1 demonstration", "name": "MetaboKG RDF Graph", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "metabokg"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmed"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmedcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "gnps"}, {"relation_type": "prov:hadPrimarySource", "source": "massive"}, {"relation_type": "prov:hadPrimarySource", "source": "redu"}], "product_url": "https://github.com/HolobiomicsLab/MetaBoKG", "secondary_source": [{"relation_type": "prov:used", "source": "ms"}, {"relation_type": "prov:used", "source": "chebi"}, {"relation_type": "prov:used", "source": "ncbitaxon"}, {"relation_type": "prov:used", "source": "envo"}, {"relation_type": "prov:used", "source": "ncit"}, {"relation_type": "prov:used", "source": "uberon"}, {"relation_type": "prov:used", "source": "chmo"}, {"relation_type": "prov:used", "source": "sio"}, {"relation_type": "prov:used", "source": "prov-o"}, {"relation_type": "prov:used", "source": "dcat"}, {"relation_type": "prov:used", "source": "afo"}], "warnings": ["No static public graph release or hosted endpoint was available in the GitHub repository when curated on 2026-06-02; the repository documents local Turtle materialization and Virtuoso loading."]}, {"category": "DataModelProduct", "description": "Turtle schema files defining MetaBoKG classes, properties, and ReDU class hierarchies used by the generated knowledge graph.", "id": "metabokg.schema", "license": {"id": "https://www.apache.org/licenses/LICENSE-2.0", "label": "Apache License 2.0"}, "name": "MetaBoKG RDF Schema", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "metabokg"}], "product_url": "https://github.com/HolobiomicsLab/MetaBoKG/tree/main/Schema", "secondary_source": [{"relation_type": "prov:wasInformedBy", "source": "ms"}, {"relation_type": "prov:wasInformedBy", "source": "chebi"}, {"relation_type": "prov:wasInformedBy", "source": "ncbitaxon"}, {"relation_type": "prov:wasInformedBy", "source": "envo"}, {"relation_type": "prov:wasInformedBy", "source": "ncit"}, {"relation_type": "prov:wasInformedBy", "source": "uberon"}, {"relation_type": "prov:wasInformedBy", "source": "chmo"}, {"relation_type": "prov:wasInformedBy", "source": "sio"}, {"relation_type": "prov:wasInformedBy", "source": "prov-o"}, {"relation_type": "prov:wasInformedBy", "source": "dcat"}, {"relation_type": "prov:wasInformedBy", "source": "afo"}]}], "publications": [{"id": "https://doi.org/10.1186/2041-1480-4-43", "title": "The environment ontology: contextualising biological and biomedical entities"}, {"id": "https://doi.org/10.1186/s13326-016-0097-6", "title": "The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation"}], "repository": "https://github.com/EnvironmentOntology/envo"}