WikiPathways
WikiPathways is an open, collaborative platform dedicated to the curation of biological pathways. The database contains 1,913 human-curated pathways across 27 species with 36,334 gene products and 7,052 metabolites, supporting multiple data formats (GPML, GMT, RDF) and programmatic access via SPARQL endpoints and web APIs. Community-driven curation with version control and CI/CD infrastructure enables rapid pathway annotation and knowledge sharing in an open science framework.
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"compression": "gzip", "description": "full database, part II: the networks (nodes, edges, scores,...)", "id": "string.database", "name": "STRING Database Network Schema", "original_source": ["biocyc", "biogrid", "cog", "compartments", "dip", "diseases", "eggnog", "ensembl", "flybase", "geo", "go", "hprd", "hgnc", "intact", "interpro", "kegg", "mint", "omim", "pdb", "pfam", "proteomehd", "pubmedcentral", "reactome", "refseq", "sgd", "simap", "smart", "swissmodel", "tissues", "uniprot", "wikipathways", "wormbase", "progenomes"], "product_file_size": 281505096430, "product_url": "https://stringdb-downloads.org/download/network_schema.v12.0.sql.gz"}, {"category": "Product", "description": "wikipathways Nodes TSV", "format": "tsv", "id": "obo-db-ingest.wikipathways.tsv", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "wikipathways Nodes TSV", "original_source": ["wikipathways"], "product_file_size": 33562, "product_url": 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