CCLE
CCLE is the Cancer Cell Line Encyclopedia, a collaboration between the Broad Institute and the Novartis Institutes for Biomedical Research.
[{"category": "Organization", "label": "CCLE"}]
[{"category": "DocumentationProduct", "description": "CCLE project site describing the Cancer Cell Line Encyclopedia collaboration, motivations, and project phases.", "format": "http", "id": "ccle.docs", "name": "CCLE Project Site", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "ccle"}], "product_url": "https://sites.broadinstitute.org/ccle/"}, {"category": "Product", "description": "CCLE datasets page linking processed genetic, transcriptomic, proteomic, and metabolomic releases and related DepMap resources.", "format": "http", "id": "ccle.datasets", "name": "CCLE Datasets", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "ccle"}], "product_url": "https://sites.broadinstitute.org/ccle/datasets"}, {"category": "Product", "description": "ccle OBO", "format": "obo", "id": "obo-db-ingest.ccle.obo", "license": {"id": "https://opendatacommons.org/licenses/odbl/1-0/", "label": "ODbL-1.0"}, "name": "ccle OBO", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "ccle"}, {"relation_type": "prov:hadPrimarySource", "source": "obo-db-ingest"}], "product_file_size": 19324, "product_url": "https://w3id.org/biopragmatics/resources/ccle/ccle.obo"}, {"category": "Product", "description": "ccle OWL", "format": "owl", "id": "obo-db-ingest.ccle.owl", "license": {"id": "https://opendatacommons.org/licenses/odbl/1-0/", "label": "ODbL-1.0"}, "name": "ccle OWL", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "ccle"}, {"relation_type": "prov:hadPrimarySource", "source": "obo-db-ingest"}], "product_file_size": 29770, "product_url": "https://w3id.org/biopragmatics/resources/ccle/ccle.owl"}, {"category": "Product", "description": "ccle OBO Graph JSON", "format": "json", "id": "obo-db-ingest.ccle.json", "license": {"id": "https://opendatacommons.org/licenses/odbl/1-0/", "label": "ODbL-1.0"}, "name": "ccle OBO Graph JSON", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "ccle"}, {"relation_type": "prov:hadPrimarySource", "source": "obo-db-ingest"}], "product_file_size": 23282, "product_url": "https://w3id.org/biopragmatics/resources/ccle/ccle.json"}, {"category": "MappingProduct", "description": "ccle SSSOM", "format": "sssom", "id": "obo-db-ingest.ccle.sssom.tsv", "license": {"id": "https://opendatacommons.org/licenses/odbl/1-0/", "label": "ODbL-1.0"}, "name": "ccle SSSOM", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "ccle"}, {"relation_type": "prov:hadPrimarySource", "source": "obo-db-ingest"}], "product_file_size": 14414, "product_url": "https://w3id.org/biopragmatics/resources/ccle/ccle.sssom.tsv"}, {"category": "Product", "description": "Network embeddings of the Bioteque graph that represent biological entities and their associations", "format": "mixed", "id": "bioteque.embeddings", "name": "Bioteque Embeddings", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "achilles"}, {"relation_type": "prov:hadPrimarySource", "source": "bioteque"}, {"relation_type": "prov:hadPrimarySource", "source": "bto"}, {"relation_type": "prov:hadPrimarySource", "source": "ccle"}, {"relation_type": "prov:hadPrimarySource", "source": "cellosaurus"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "chemicalchecker"}, {"relation_type": "prov:hadPrimarySource", "source": "clue"}, {"relation_type": "prov:hadPrimarySource", "source": "compartments"}, {"relation_type": "prov:hadPrimarySource", "source": "corum"}, {"relation_type": "prov:hadPrimarySource", "source": "cosmic"}, {"relation_type": "prov:hadPrimarySource", "source": "creeds"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "depmap"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "dorothea"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "drugcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "gdsc"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gtex"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "huri"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "lincs"}, {"relation_type": "prov:hadPrimarySource", "source": "offsides"}, {"relation_type": "prov:hadPrimarySource", "source": "omnipath"}, {"relation_type": "prov:hadPrimarySource", "source": "opentargets"}, {"relation_type": "prov:hadPrimarySource", "source": "pharmacodb"}, {"relation_type": "prov:hadPrimarySource", "source": "prism"}, {"relation_type": "prov:hadPrimarySource", "source": "progeny"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "repodb"}, {"relation_type": "prov:hadPrimarySource", "source": "repohub"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}], "product_url": "https://bioteque.irbbarcelona.org/downloads/embeddings"}, {"category": "ProcessProduct", "description": "INDRA CoGEx is a graph database integrating causal relations, ontological relations, properties, and data, assembled at scale automatically from the scientific literature and structured sources. This is the code to build the graph.", "format": "python", "id": "indra.cogex.code", "name": "INDRA CoGEx Build Code", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "nihreporter"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmed"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "cellmarker"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "ccle"}, {"relation_type": "prov:hadPrimarySource", "source": "clinicaltrialsgov"}, {"relation_type": "prov:hadPrimarySource", "source": "indra"}], "product_url": "https://github.com/gyorilab/indra_cogex"}, {"category": "Product", "description": "ccle Nodes TSV", "format": "tsv", "id": "obo-db-ingest.ccle.tsv", "license": {"id": "https://opendatacommons.org/licenses/odbl/1-0/", "label": "ODbL-1.0"}, "name": "ccle Nodes TSV", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "ccle"}, {"relation_type": "prov:hadPrimarySource", "source": "obo-db-ingest"}], "product_file_size": 12188, "product_url": "https://w3id.org/biopragmatics/resources/ccle/ccle.tsv"}, {"category": "GraphicalInterface", "description": "Primary web portal for searching and browsing cancer pharmacogenomics data across multiple integrated datasets with interactive dose-response curve visualization", "format": "http", "id": "pharmacodb.portal", "name": "PharmacoDB Web Application", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmacodb"}], "product_url": "https://pharmacodb.ca/", "secondary_source": [{"relation_type": "prov:wasInfluencedBy", "source": "ccle"}, {"relation_type": "prov:wasInfluencedBy", "source": "gdsc"}, {"relation_type": "prov:wasInfluencedBy", "source": "ctrp"}]}, {"category": "ProgrammingInterface", "description": "GraphQL API providing programmatic access to cell lines, compounds, tissues, datasets, experiments, and intersections data", "format": "http", "id": "pharmacodb.api", "is_public": true, "name": "PharmacoDB API", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmacodb"}], "product_url": "https://pharmacodb.ca/graphql", "secondary_source": [{"relation_type": "prov:wasInfluencedBy", "source": "ccle"}, {"relation_type": "prov:wasInfluencedBy", "source": "gdsc"}, {"relation_type": "prov:wasInfluencedBy", "source": "ctrp"}]}, {"category": "DocumentationProduct", "description": "Comprehensive user documentation covering search functionality, datasets, tissues, cell lines, experiments, genes, compounds, and biomarker discovery features", "format": "http", "id": "pharmacodb.documentation", "name": "PharmacoDB Documentation", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmacodb"}], "product_url": "https://pharmacodb.ca/documentation", "secondary_source": [{"relation_type": "prov:wasInfluencedBy", "source": "ccle"}, {"relation_type": "prov:wasInfluencedBy", "source": "gdsc"}, {"relation_type": "prov:wasInfluencedBy", "source": "ctrp"}]}, {"category": "Product", "description": "Harmonizome 3.0 processed dataset downloads, including dataset-specific association files and knowledge graph serialization downloads.", "format": "mixed", "id": "harmonizome.downloads", "name": "Harmonizome Downloads", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "harmonizome"}], "product_url": "https://maayanlab.cloud/Harmonizome/download", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "achilles"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogps"}, {"relation_type": "prov:wasDerivedFrom", "source": "ccle"}, {"relation_type": "prov:wasDerivedFrom", "source": "cellmarker"}, {"relation_type": "prov:wasDerivedFrom", "source": "chea"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "cmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "compartments"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "cosmic"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "depmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "encode"}, {"relation_type": "prov:wasDerivedFrom", "source": "gdsc"}, {"relation_type": "prov:wasDerivedFrom", "source": "geo"}, {"relation_type": "prov:wasDerivedFrom", "source": "glygen"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gtex"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "hpa"}, {"relation_type": "prov:wasDerivedFrom", "source": "hubmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "impc"}, {"relation_type": "prov:wasDerivedFrom", "source": "interpro"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "lincs-l1000"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "motrpac"}, {"relation_type": "prov:wasDerivedFrom", "source": "mp"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pfocr"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "tcga"}, {"relation_type": "prov:wasDerivedFrom", "source": "tissues"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "description": "Neo4j knowledge graph serialization of Harmonizome processed datasets, including genes, attributes, resources, datasets, and gene-attribute associations.", "dump_format": "neo4j", "format": "neo4j", "id": "harmonizome.kg-neo4j", "latest_version": "3.0", "name": "Harmonizome Knowledge Graph Neo4j Database", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "harmonizome"}], "product_url": "https://harmonizome-kg.maayanlab.cloud/", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "achilles"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogps"}, {"relation_type": "prov:wasDerivedFrom", "source": "ccle"}, {"relation_type": "prov:wasDerivedFrom", "source": "cellmarker"}, {"relation_type": "prov:wasDerivedFrom", "source": "chea"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "cmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "compartments"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "cosmic"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "depmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "encode"}, {"relation_type": "prov:wasDerivedFrom", "source": "gdsc"}, {"relation_type": "prov:wasDerivedFrom", "source": "geo"}, {"relation_type": "prov:wasDerivedFrom", "source": "glygen"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gtex"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "hpa"}, {"relation_type": "prov:wasDerivedFrom", "source": "hubmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "impc"}, {"relation_type": "prov:wasDerivedFrom", "source": "interpro"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "lincs-l1000"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "motrpac"}, {"relation_type": "prov:wasDerivedFrom", "source": "mp"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pfocr"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "tcga"}, {"relation_type": "prov:wasDerivedFrom", "source": "tissues"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}]
{"activity_status": "active", "category": "DataSource", "contacts": [{"category": "Organization", "label": "CCLE"}], "creation_date": "2025-03-18T00:00:00Z", "description": "CCLE is the Cancer Cell Line Encyclopedia, a collaboration between the Broad Institute and the Novartis Institutes for Biomedical Research.", "domains": ["biomedical"], "homepage_url": "https://sites.broadinstitute.org/ccle/", "id": "ccle", "last_modified_date": "2026-06-18T00:00:00Z", "layout": "resource_detail", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC BY 4.0", "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png"}, "name": "CCLE", "products": [{"category": "DocumentationProduct", "description": "CCLE project site describing the Cancer Cell Line Encyclopedia collaboration, motivations, and project phases.", "format": "http", "id": "ccle.docs", "name": "CCLE Project Site", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "ccle"}], "product_url": "https://sites.broadinstitute.org/ccle/"}, {"category": "Product", "description": "CCLE datasets page linking processed genetic, transcriptomic, proteomic, and metabolomic releases and related DepMap resources.", "format": "http", "id": "ccle.datasets", "name": "CCLE Datasets", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "ccle"}], "product_url": "https://sites.broadinstitute.org/ccle/datasets"}, {"category": "Product", "description": "ccle OBO", "format": "obo", "id": "obo-db-ingest.ccle.obo", "license": {"id": "https://opendatacommons.org/licenses/odbl/1-0/", "label": "ODbL-1.0"}, "name": "ccle OBO", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "ccle"}, {"relation_type": "prov:hadPrimarySource", "source": "obo-db-ingest"}], "product_file_size": 19324, "product_url": "https://w3id.org/biopragmatics/resources/ccle/ccle.obo"}, {"category": "Product", "description": "ccle OWL", "format": "owl", "id": "obo-db-ingest.ccle.owl", "license": {"id": "https://opendatacommons.org/licenses/odbl/1-0/", "label": "ODbL-1.0"}, "name": "ccle OWL", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "ccle"}, {"relation_type": "prov:hadPrimarySource", "source": "obo-db-ingest"}], "product_file_size": 29770, "product_url": "https://w3id.org/biopragmatics/resources/ccle/ccle.owl"}, {"category": "Product", "description": "ccle OBO Graph JSON", "format": "json", "id": "obo-db-ingest.ccle.json", "license": {"id": "https://opendatacommons.org/licenses/odbl/1-0/", "label": "ODbL-1.0"}, "name": "ccle OBO Graph JSON", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "ccle"}, {"relation_type": "prov:hadPrimarySource", "source": "obo-db-ingest"}], "product_file_size": 23282, "product_url": "https://w3id.org/biopragmatics/resources/ccle/ccle.json"}, {"category": "MappingProduct", "description": "ccle SSSOM", "format": "sssom", "id": "obo-db-ingest.ccle.sssom.tsv", "license": {"id": "https://opendatacommons.org/licenses/odbl/1-0/", "label": "ODbL-1.0"}, "name": "ccle SSSOM", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "ccle"}, {"relation_type": "prov:hadPrimarySource", "source": "obo-db-ingest"}], "product_file_size": 14414, "product_url": "https://w3id.org/biopragmatics/resources/ccle/ccle.sssom.tsv"}, {"category": "Product", "description": "Network embeddings of the Bioteque graph that represent biological entities and their associations", "format": "mixed", "id": "bioteque.embeddings", "name": "Bioteque Embeddings", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "achilles"}, {"relation_type": "prov:hadPrimarySource", "source": "bioteque"}, {"relation_type": "prov:hadPrimarySource", "source": "bto"}, {"relation_type": "prov:hadPrimarySource", "source": "ccle"}, {"relation_type": "prov:hadPrimarySource", "source": "cellosaurus"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "chemicalchecker"}, {"relation_type": "prov:hadPrimarySource", "source": "clue"}, {"relation_type": "prov:hadPrimarySource", "source": "compartments"}, {"relation_type": "prov:hadPrimarySource", "source": "corum"}, {"relation_type": "prov:hadPrimarySource", "source": "cosmic"}, {"relation_type": "prov:hadPrimarySource", "source": "creeds"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "depmap"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "dorothea"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "drugcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "gdsc"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gtex"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "huri"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "lincs"}, {"relation_type": "prov:hadPrimarySource", "source": "offsides"}, {"relation_type": "prov:hadPrimarySource", "source": "omnipath"}, {"relation_type": "prov:hadPrimarySource", "source": "opentargets"}, {"relation_type": "prov:hadPrimarySource", "source": "pharmacodb"}, {"relation_type": "prov:hadPrimarySource", "source": "prism"}, {"relation_type": "prov:hadPrimarySource", "source": "progeny"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "repodb"}, {"relation_type": "prov:hadPrimarySource", "source": "repohub"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}], "product_url": "https://bioteque.irbbarcelona.org/downloads/embeddings"}, {"category": "ProcessProduct", "description": "INDRA CoGEx is a graph database integrating causal relations, ontological relations, properties, and data, assembled at scale automatically from the scientific literature and structured sources. This is the code to build the graph.", "format": "python", "id": "indra.cogex.code", "name": "INDRA CoGEx Build Code", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "nihreporter"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmed"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "cellmarker"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "ccle"}, {"relation_type": "prov:hadPrimarySource", "source": "clinicaltrialsgov"}, {"relation_type": "prov:hadPrimarySource", "source": "indra"}], "product_url": "https://github.com/gyorilab/indra_cogex"}, {"category": "Product", "description": "ccle Nodes TSV", "format": "tsv", "id": "obo-db-ingest.ccle.tsv", "license": {"id": "https://opendatacommons.org/licenses/odbl/1-0/", "label": "ODbL-1.0"}, "name": "ccle Nodes TSV", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "ccle"}, {"relation_type": "prov:hadPrimarySource", "source": "obo-db-ingest"}], "product_file_size": 12188, "product_url": "https://w3id.org/biopragmatics/resources/ccle/ccle.tsv"}, {"category": "GraphicalInterface", "description": "Primary web portal for searching and browsing cancer pharmacogenomics data across multiple integrated datasets with interactive dose-response curve visualization", "format": "http", "id": "pharmacodb.portal", "name": "PharmacoDB Web Application", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmacodb"}], "product_url": "https://pharmacodb.ca/", "secondary_source": [{"relation_type": "prov:wasInfluencedBy", "source": "ccle"}, {"relation_type": "prov:wasInfluencedBy", "source": "gdsc"}, {"relation_type": "prov:wasInfluencedBy", "source": "ctrp"}]}, {"category": "ProgrammingInterface", "description": "GraphQL API providing programmatic access to cell lines, compounds, tissues, datasets, experiments, and intersections data", "format": "http", "id": "pharmacodb.api", "is_public": true, "name": "PharmacoDB API", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmacodb"}], "product_url": "https://pharmacodb.ca/graphql", "secondary_source": [{"relation_type": "prov:wasInfluencedBy", "source": "ccle"}, {"relation_type": "prov:wasInfluencedBy", "source": "gdsc"}, {"relation_type": "prov:wasInfluencedBy", "source": "ctrp"}]}, {"category": "DocumentationProduct", "description": "Comprehensive user documentation covering search functionality, datasets, tissues, cell lines, experiments, genes, compounds, and biomarker discovery features", "format": "http", "id": "pharmacodb.documentation", "name": "PharmacoDB Documentation", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "pharmacodb"}], "product_url": "https://pharmacodb.ca/documentation", "secondary_source": [{"relation_type": "prov:wasInfluencedBy", "source": "ccle"}, {"relation_type": "prov:wasInfluencedBy", "source": "gdsc"}, {"relation_type": "prov:wasInfluencedBy", "source": "ctrp"}]}, {"category": "Product", "description": "Harmonizome 3.0 processed dataset downloads, including dataset-specific association files and knowledge graph serialization downloads.", "format": "mixed", "id": "harmonizome.downloads", "name": "Harmonizome Downloads", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "harmonizome"}], "product_url": "https://maayanlab.cloud/Harmonizome/download", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "achilles"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogps"}, {"relation_type": "prov:wasDerivedFrom", "source": "ccle"}, {"relation_type": "prov:wasDerivedFrom", "source": "cellmarker"}, {"relation_type": "prov:wasDerivedFrom", "source": "chea"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "cmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "compartments"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "cosmic"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "depmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "encode"}, {"relation_type": "prov:wasDerivedFrom", "source": "gdsc"}, {"relation_type": "prov:wasDerivedFrom", "source": "geo"}, {"relation_type": "prov:wasDerivedFrom", "source": "glygen"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gtex"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "hpa"}, {"relation_type": "prov:wasDerivedFrom", "source": "hubmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "impc"}, {"relation_type": "prov:wasDerivedFrom", "source": "interpro"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "lincs-l1000"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "motrpac"}, {"relation_type": "prov:wasDerivedFrom", "source": "mp"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pfocr"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "tcga"}, {"relation_type": "prov:wasDerivedFrom", "source": "tissues"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "description": "Neo4j knowledge graph serialization of Harmonizome processed datasets, including genes, attributes, resources, datasets, and gene-attribute associations.", "dump_format": "neo4j", "format": "neo4j", "id": "harmonizome.kg-neo4j", "latest_version": "3.0", "name": "Harmonizome Knowledge Graph Neo4j Database", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "harmonizome"}], "product_url": "https://harmonizome-kg.maayanlab.cloud/", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "achilles"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogps"}, {"relation_type": "prov:wasDerivedFrom", "source": "ccle"}, {"relation_type": "prov:wasDerivedFrom", "source": "cellmarker"}, {"relation_type": "prov:wasDerivedFrom", "source": "chea"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "cmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "compartments"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "cosmic"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "depmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "encode"}, {"relation_type": "prov:wasDerivedFrom", "source": "gdsc"}, {"relation_type": "prov:wasDerivedFrom", "source": "geo"}, {"relation_type": "prov:wasDerivedFrom", "source": "glygen"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gtex"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "hpa"}, {"relation_type": "prov:wasDerivedFrom", "source": "hubmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "impc"}, {"relation_type": "prov:wasDerivedFrom", "source": "interpro"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "lincs-l1000"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "motrpac"}, {"relation_type": "prov:wasDerivedFrom", "source": "mp"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pfocr"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "tcga"}, {"relation_type": "prov:wasDerivedFrom", "source": "tissues"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}], "publications": [{"authors": ["Barretina J", "Caponigro G", "Stransky N", "Venkatesan K", "Margolin AA"], "doi": "10.1038/nature11003", "id": "https://www.ncbi.nlm.nih.gov/pubmed/22460905", "journal": "Nature", "preferred": true, "title": "The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity", "year": "2012"}], "taxon": ["NCBITaxon:9606"]}