EpiGraphDB
EpiGraphDB is an analytical platform and graph database for health data science that integrates Mendelian randomization causal estimates across a wide range of phenotypes with diverse bioinformatic and epidemiological resources. It supports systematic causal inference, data mining, and exploration through a web application, API, R package, and curated graph knowledge base.
[{"category": "Organization", "contact_details": [{"contact_type": "email", "value": "feedback@epigraphdb.org"}, {"contact_type": "url", "value": "https://docs.epigraphdb.org/"}, {"contact_type": "github", "value": "https://github.com/MRCIEU/epigraphdb"}], "label": "EpiGraphDB Team (MRC Integrative Epidemiology Unit, University of Bristol)"}]
[{"category": "GraphicalInterface", "description": "Web application for interactive exploration of EpiGraphDB including search, causal estimates, pathways, literature evidence, ontology, and visualization gallery", "format": "http", "id": "epigraphdb.web", "name": "EpiGraphDB Web UI", "original_source": ["epigraphdb"], "product_url": "https://epigraphdb.org/"}, {"category": "ProgrammingInterface", "description": "Public REST API for programmatic access to EpiGraphDB graph entities, relationships, causal estimates, and metadata", "id": "epigraphdb.api", "is_public": true, "name": "EpiGraphDB REST API", "original_source": ["epigraphdb"], "product_url": "https://api.epigraphdb.org/"}, {"category": "ProgrammingInterface", "description": "R client package providing higher-level access to EpiGraphDB API endpoints and analysis workflows", "id": "epigraphdb.rpackage", "is_public": true, "name": "epigraphdb R Package", "original_source": ["epigraphdb"], "product_url": "https://mrcieu.github.io/epigraphdb-r/", "secondary_source": ["epigraphdb"]}, {"category": "DocumentationProduct", "description": "Example notebooks demonstrating EpiGraphDB use cases, including causal inference, pleiotropy assessment, drug target identification, literature triangulation, and metadata queries", "id": "epigraphdb.examples", "name": "EpiGraphDB Example Notebooks", "original_source": ["epigraphdb"], "product_url": "https://github.com/MRCIEU/epigraphdb/tree/master/paper-case-studies"}, {"category": "GraphProduct", "description": "Integrated graph knowledge base combining Mendelian randomization causal estimates, pathway, QTL, drug, literature-derived, and ontology-backed relationships (Neo4j backend)", "format": "neo4j", "id": "epigraphdb.graph", "name": "EpiGraphDB Graph Database", "original_source": ["epigraphdb", "kg-monarch", "vectology", "ukbiobank", "prsatlas", "eqtlgen", "mondo", "gtex", "ensembl", "cpic", "opentargets", "efo", "semmeddb", "intact", "string", "reactome", "mrbase"], "product_url": "https://docs.epigraphdb.org/graph-database/", "secondary_source": ["epigraphdb"]}, {"category": "DocumentationProduct", "description": "Documentation hub containing conceptual overviews, API endpoint references, data integration details, metrics, and research study links", "format": "http", "id": "epigraphdb.docs", "name": "EpiGraphDB Documentation", "original_source": ["epigraphdb"], "product_url": "https://docs.epigraphdb.org/"}]
{"activity_status": "active", "category": "KnowledgeGraph", "contacts": [{"category": "Organization", "contact_details": [{"contact_type": "email", "value": "feedback@epigraphdb.org"}, {"contact_type": "url", "value": "https://docs.epigraphdb.org/"}, {"contact_type": "github", "value": "https://github.com/MRCIEU/epigraphdb"}], "label": "EpiGraphDB Team (MRC Integrative Epidemiology Unit, University of Bristol)"}], "creation_date": "2025-09-03T00:00:00Z", "description": "EpiGraphDB is an analytical platform and graph database for health data science that integrates Mendelian randomization causal estimates across a wide range of phenotypes with diverse bioinformatic and epidemiological resources. It supports systematic causal inference, data mining, and exploration through a web application, API, R package, and curated graph knowledge base.", "domains": ["health", "biomedical", "genomics", "investigations"], "evaluation_page": "resource/epigraphdb/epigraphdb_eval_automated.html", "homepage_url": "https://epigraphdb.org/", "id": "epigraphdb", "last_modified_date": "2025-09-03T00:00:00Z", "layout": "resource_detail", "license": {"id": "https://github.com/MRCIEU/epigraphdb", "label": "Mixed"}, "name": "EpiGraphDB", "products": [{"category": "GraphicalInterface", "description": "Web application for interactive exploration of EpiGraphDB including search, causal estimates, pathways, literature evidence, ontology, and visualization gallery", "format": "http", "id": "epigraphdb.web", "name": "EpiGraphDB Web UI", "original_source": ["epigraphdb"], "product_url": "https://epigraphdb.org/"}, {"category": "ProgrammingInterface", "description": "Public REST API for programmatic access to EpiGraphDB graph entities, relationships, causal estimates, and metadata", "id": "epigraphdb.api", "is_public": true, "name": "EpiGraphDB REST API", "original_source": ["epigraphdb"], "product_url": "https://api.epigraphdb.org/"}, {"category": "ProgrammingInterface", "description": "R client package providing higher-level access to EpiGraphDB API endpoints and analysis workflows", "id": "epigraphdb.rpackage", "is_public": true, "name": "epigraphdb R Package", "original_source": ["epigraphdb"], "product_url": "https://mrcieu.github.io/epigraphdb-r/", "secondary_source": ["epigraphdb"]}, {"category": "DocumentationProduct", "description": "Example notebooks demonstrating EpiGraphDB use cases, including causal inference, pleiotropy assessment, drug target identification, literature triangulation, and metadata queries", "id": "epigraphdb.examples", "name": "EpiGraphDB Example Notebooks", "original_source": ["epigraphdb"], "product_url": "https://github.com/MRCIEU/epigraphdb/tree/master/paper-case-studies"}, {"category": "GraphProduct", "description": "Integrated graph knowledge base combining Mendelian randomization causal estimates, pathway, QTL, drug, literature-derived, and ontology-backed relationships (Neo4j backend)", "format": "neo4j", "id": "epigraphdb.graph", "name": "EpiGraphDB Graph Database", "original_source": ["epigraphdb", "kg-monarch", "vectology", "ukbiobank", "prsatlas", "eqtlgen", "mondo", "gtex", "ensembl", "cpic", "opentargets", "efo", "semmeddb", "intact", "string", "reactome", "mrbase"], "product_url": "https://docs.epigraphdb.org/graph-database/", "secondary_source": ["epigraphdb"]}, {"category": "DocumentationProduct", "description": "Documentation hub containing conceptual overviews, API endpoint references, data integration details, metrics, and research study links", "format": "http", "id": "epigraphdb.docs", "name": "EpiGraphDB Documentation", "original_source": ["epigraphdb"], "product_url": "https://docs.epigraphdb.org/"}]}