Phospho.ELM
Phospho.ELM is a manually curated database of experimentally verified serine, threonine, and tyrosine phosphorylation sites in eukaryotic proteins, linking phosphorylation instances to kinases, species, sequence accessions, and literature references.
[{"category": "Organization", "contact_details": [{"contact_type": "email", "value": "phospho@elm.eu.org"}, {"contact_type": "url", "value": "http://phospho.elm.eu.org/about.html"}], "label": "Phospho.ELM"}]
[{"category": "GraphicalInterface", "description": "Phospho.ELM HTTP web portal for searching experimentally verified phosphorylation sites by protein, accession, kinase, phosphopeptide-binding domain, organism group, and output format.", "format": "http", "id": "phosphoelm.portal", "name": "Phospho.ELM Web Portal", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "phosphoelm"}], "product_url": "http://phospho.elm.eu.org/"}, {"category": "Product", "description": "Phospho.ELM version 9.0 dataset request page for phosphorylation instances with accessions, sequences, residue positions, phosphorylated residues, PubMed identifiers, upstream kinases, evidence source class, species, and entry dates.", "format": "mixed", "id": "phosphoelm.dataset", "license": {"id": "http://phospho.elm.eu.org/dumps/Phospho.Elm_AcademicLicense.pdf", "label": "Phospho.ELM Academic License"}, "name": "Phospho.ELM Dataset", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "phosphoelm"}], "product_url": "http://phospho.elm.eu.org/dataset.html", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "ensembl"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubmed"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}], "warnings": []}, {"category": "ProcessProduct", "description": "Phospho.ELM PhosphoBLAST search tool for comparing protein queries against the curated phosphorylated-peptide dataset.", "id": "phosphoelm.phosphoblast", "name": "Phospho.ELM PhosphoBLAST", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "phosphoelm"}], "product_url": "http://phospho.elm.eu.org/pELMBlastSearch.html", "secondary_source": [{"relation_type": "prov:wasInformedBy", "source": "smart"}], "warnings": []}, {"category": "ProgrammingInterface", "connection_url": "http://phospho.elm.eu.org/webservice/phosphoELMdb.wsdl", "description": "Prototype Phospho.ELM SOAP web service WSDL for programmatic access to Phospho.ELM database functions.", "format": "http", "id": "phosphoelm.webservice", "is_public": true, "name": "Phospho.ELM Web Service", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "phosphoelm"}], "product_url": "http://phospho.elm.eu.org/webservice/phosphoELMdb.wsdl"}, {"category": "GraphProduct", "description": "Current iPTMnet PTM record table with PTM type, source, UniProt protein, organism, site, enzyme, relation identifiers, and publication evidence.", "format": "tsv", "id": "iptmnet.ptm", "license": {"id": "https://creativecommons.org/licenses/by-nc-sa/4.0/", "label": "CC BY-NC-SA 4.0"}, "name": "iPTMnet PTM Table", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "iptmnet"}], "product_file_size": 44116546, "product_url": "https://research.bioinformatics.udel.edu/iptmnet_data/files/current/ptm.txt", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "dbptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsno"}, {"relation_type": "prov:wasDerivedFrom", "source": "efip"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "nextprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "p3db"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphoelm"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphat"}, {"relation_type": "prov:wasDerivedFrom", "source": "pombase"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubtator"}, {"relation_type": "prov:wasDerivedFrom", "source": "rlims-p"}, {"relation_type": "prov:wasDerivedFrom", "source": "signor"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}]}]
{"activity_status": "orphaned", "category": "DataSource", "contacts": [{"category": "Organization", "contact_details": [{"contact_type": "email", "value": "phospho@elm.eu.org"}, {"contact_type": "url", "value": "http://phospho.elm.eu.org/about.html"}], "label": "Phospho.ELM"}], "creation_date": "2026-06-02T00:00:00Z", "description": "Phospho.ELM is a manually curated database of experimentally verified serine, threonine, and tyrosine phosphorylation sites in eukaryotic proteins, linking phosphorylation instances to kinases, species, sequence accessions, and literature references.", "domains": ["biomedical", "proteomics", "biological systems"], "homepage_url": "http://phospho.elm.eu.org/", "id": "phosphoelm", "last_modified_date": "2026-06-18T00:00:00Z", "layout": "resource_detail", "name": "Phospho.ELM", "products": [{"category": "GraphicalInterface", "description": "Phospho.ELM HTTP web portal for searching experimentally verified phosphorylation sites by protein, accession, kinase, phosphopeptide-binding domain, organism group, and output format.", "format": "http", "id": "phosphoelm.portal", "name": "Phospho.ELM Web Portal", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "phosphoelm"}], "product_url": "http://phospho.elm.eu.org/"}, {"category": "Product", "description": "Phospho.ELM version 9.0 dataset request page for phosphorylation instances with accessions, sequences, residue positions, phosphorylated residues, PubMed identifiers, upstream kinases, evidence source class, species, and entry dates.", "format": "mixed", "id": "phosphoelm.dataset", "license": {"id": "http://phospho.elm.eu.org/dumps/Phospho.Elm_AcademicLicense.pdf", "label": "Phospho.ELM Academic License"}, "name": "Phospho.ELM Dataset", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "phosphoelm"}], "product_url": "http://phospho.elm.eu.org/dataset.html", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "ensembl"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubmed"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}], "warnings": []}, {"category": "ProcessProduct", "description": "Phospho.ELM PhosphoBLAST search tool for comparing protein queries against the curated phosphorylated-peptide dataset.", "id": "phosphoelm.phosphoblast", "name": "Phospho.ELM PhosphoBLAST", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "phosphoelm"}], "product_url": "http://phospho.elm.eu.org/pELMBlastSearch.html", "secondary_source": [{"relation_type": "prov:wasInformedBy", "source": "smart"}], "warnings": []}, {"category": "ProgrammingInterface", "connection_url": "http://phospho.elm.eu.org/webservice/phosphoELMdb.wsdl", "description": "Prototype Phospho.ELM SOAP web service WSDL for programmatic access to Phospho.ELM database functions.", "format": "http", "id": "phosphoelm.webservice", "is_public": true, "name": "Phospho.ELM Web Service", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "phosphoelm"}], "product_url": "http://phospho.elm.eu.org/webservice/phosphoELMdb.wsdl"}, {"category": "GraphProduct", "description": "Current iPTMnet PTM record table with PTM type, source, UniProt protein, organism, site, enzyme, relation identifiers, and publication evidence.", "format": "tsv", "id": "iptmnet.ptm", "license": {"id": "https://creativecommons.org/licenses/by-nc-sa/4.0/", "label": "CC BY-NC-SA 4.0"}, "name": "iPTMnet PTM Table", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "iptmnet"}], "product_file_size": 44116546, "product_url": "https://research.bioinformatics.udel.edu/iptmnet_data/files/current/ptm.txt", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "dbptm"}, {"relation_type": "prov:wasDerivedFrom", "source": "dbsno"}, {"relation_type": "prov:wasDerivedFrom", "source": "efip"}, {"relation_type": "prov:wasDerivedFrom", "source": "hprd"}, {"relation_type": "prov:wasDerivedFrom", "source": "nextprot"}, {"relation_type": "prov:wasDerivedFrom", "source": "p3db"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphoelm"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphogrid"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphat"}, {"relation_type": "prov:wasDerivedFrom", "source": "pombase"}, {"relation_type": "prov:wasDerivedFrom", "source": "pubtator"}, {"relation_type": "prov:wasDerivedFrom", "source": "rlims-p"}, {"relation_type": "prov:wasDerivedFrom", "source": "signor"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}]}], "publications": [{"authors": ["Holger Dinkel", "Claudia Chica", "Allegra Via", "Christian M Gould", "Lars J Jensen", "Toby J Gibson", "Francesca Diella"], "doi": "10.1093/nar/gkq1104", "id": "doi:10.1093/nar/gkq1104", "journal": "Nucleic Acids Research", "preferred": true, "title": "Phospho.ELM, a database of phosphorylation sites - update 2011", "year": "2011"}, {"authors": ["Francesca Diella", "Christian M Gould", "Claudia Chica", "Allegra Via", "Toby J Gibson"], "doi": "10.1093/nar/gkm772", "id": "doi:10.1093/nar/gkm772", "journal": "Nucleic Acids Research", "title": "Phospho.ELM, a database of phosphorylation sites - update 2008", "year": "2007"}, {"authors": ["Francesca Diella", "Scott Cameron", "Christine Gemund", "Rune Linding", "Allegra Via", "Bernhard Kuster", "Thomas Sicheritz-Ponten", "Nicolaj Blom", "Toby J Gibson"], "doi": "10.1186/1471-2105-5-79", "id": "doi:10.1186/1471-2105-5-79", "journal": "BMC Bioinformatics", "title": "Phospho.ELM, a database of experimentally verified phosphorylation sites in eukaryotic proteins", "year": "2004"}], "synonyms": ["PhosphoELM"], "warnings": ["Phospho.ELM is reachable over HTTP, but its own release notes identify version 9.0 from September 2010 as the current release."]}