PathoPhenoDB
PathoPhenoDB is a database of human pathogens, the diseases and phenotypes they elicit in human organisms, and information related to drug treatments and mechanisms of drug resistance. Specifically, PathoPhenoDB contains associations between pathogens and diseases, between pathogens and phenotypes, between drugs that are approved to treat particular pathogens, and it identifies genes or proteins within pathogens that can convey resistance to particular drugs.
[{"category": "Organization", "contact_details": [{"contact_type": "url", "value": "https://github.com/bio-ontology-research-group"}], "label": "Bio-Ontology Research Group"}, {"category": "Individual", "contact_details": [{"contact_type": "github", "value": "bio-ontology-research-group"}], "label": "Bio-Ontology Research Group"}]
[{"category": "GraphProduct", "description": "PathoPhenoDB data containing pathogen-disease and pathogen-phenotype associations", "format": "ntriples", "id": "pathophenodb.data", "name": "PathoPhenoDB RDF data, version 3", "original_source": ["pathophenodb"], "product_file_size": 203836895, "product_url": "http://patho.phenomebrowser.net/media/downloads/patho_pheno_withsymbols.nt"}, {"category": "GraphicalInterface", "description": "Web interface for querying and browsing PathoPhenoDB data", "id": "pathophenodb.web", "name": "PathoPhenoDB Web Interface", "original_source": ["pathophenodb"], "product_url": "http://patho.phenomebrowser.net/"}, {"category": "GraphProduct", "description": "The SPOKE knowledge graph containing nodes and edges from multiple biomedical data sources.", "id": "spoke.graph", "name": "SPOKE Graph", "original_source": ["ncbigene", "pubmed", "mesh", "pid", "doid", "diseases", "drugcentral", "go", "gwascatalog", "reactome", "lincs-l1000", "uberon", "wikipathways", "bindingdb", "drugbank", "sider", "bgee", "uniprot", "string", "omim", "chembl", "foodb", "civic", "gdsc", "clinicaltrialsgov", "hpa", "cl", "kegg", "metacyc", "bv-brc", "ncbitaxon", "pathophenodb", "pfam", "interpro", "protcid"], "secondary_source": ["spoke"]}]
{"activity_status": "active", "category": "DataSource", "contacts": [{"category": "Organization", "contact_details": [{"contact_type": "url", "value": "https://github.com/bio-ontology-research-group"}], "label": "Bio-Ontology Research Group"}, {"category": "Individual", "contact_details": [{"contact_type": "github", "value": "bio-ontology-research-group"}], "label": "Bio-Ontology Research Group"}], "description": "PathoPhenoDB is a database of human pathogens, the diseases and phenotypes they elicit in human organisms, and information related to drug treatments and mechanisms of drug resistance. Specifically, PathoPhenoDB contains associations between pathogens and diseases, between pathogens and phenotypes, between drugs that are approved to treat particular pathogens, and it identifies genes or proteins within pathogens that can convey resistance to particular drugs.", "domains": ["health", "microbiology", "pharmacology", "drug discovery"], "homepage_url": "http://patho.phenomebrowser.net/", "id": "pathophenodb", "layout": "resource_detail", "name": "PathoPhenoDB", "products": [{"category": "GraphProduct", "description": "PathoPhenoDB data containing pathogen-disease and pathogen-phenotype associations", "format": "ntriples", "id": "pathophenodb.data", "name": "PathoPhenoDB RDF data, version 3", "original_source": ["pathophenodb"], "product_file_size": 203836895, "product_url": "http://patho.phenomebrowser.net/media/downloads/patho_pheno_withsymbols.nt"}, {"category": "GraphicalInterface", "description": "Web interface for querying and browsing PathoPhenoDB data", "id": "pathophenodb.web", "name": "PathoPhenoDB Web Interface", "original_source": ["pathophenodb"], "product_url": "http://patho.phenomebrowser.net/"}, {"category": "GraphProduct", "description": "The SPOKE knowledge graph containing nodes and edges from multiple biomedical data sources.", "id": "spoke.graph", "name": "SPOKE Graph", "original_source": ["ncbigene", "pubmed", "mesh", "pid", "doid", "diseases", "drugcentral", "go", "gwascatalog", "reactome", "lincs-l1000", "uberon", "wikipathways", "bindingdb", "drugbank", "sider", "bgee", "uniprot", "string", "omim", "chembl", "foodb", "civic", "gdsc", "clinicaltrialsgov", "hpa", "cl", "kegg", "metacyc", "bv-brc", "ncbitaxon", "pathophenodb", "pfam", "interpro", "protcid"], "secondary_source": ["spoke"]}], "publications": [{"authors": ["\u015eenay Kafkas", "Marwa Abdelhakim", "Yasmeen Hashish", "Maxat Kulmanov", "Marwa Abdellatif", "Paul N. Schofield", "Robert Hoehndorf"], "id": "http://doi.org/10.1038/s41597-019-0090-x", "journal": "Scientific Data", "preferred": true, "title": "PathoPhenoDB, linking human pathogens to their phenotypes in support of infectious disease research", "year": "2019"}], "repository": "https://github.com/bio-ontology-research-group/pathophenodb", "taxon": ["NCBITaxon:9606"]}