OmniCorp
OmniCorp is a NCATS Translator literature co-occurrence database that runs named-entity recognition and entity linking over public PubMed abstracts to count publications containing individual Biolink-relevant entities and pairs of co-mentioned entities. It supports literature-based discovery and evidence augmentation by adding co-occurrence counts or literature co-occurrence edges to TRAPI messages.
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{"activity_status": "active", "category": "DataSource", "contacts": [{"category": "Organization", "contact_details": [{"contact_type": "url", "value": "https://github.com/NCATSTranslator/Translator-All/wiki/OmniCorp"}], "label": "NCATS Translator"}], "creation_date": "2025-11-05T00:00:00Z", "description": "OmniCorp is a NCATS Translator literature co-occurrence database that runs named-entity recognition and entity linking over public PubMed abstracts to count publications containing individual Biolink-relevant entities and pairs of co-mentioned entities. It supports literature-based discovery and evidence augmentation by adding co-occurrence counts or literature co-occurrence edges to TRAPI messages.", "domains": ["literature", "biomedical"], "homepage_url": "https://github.com/NCATSTranslator/Translator-All/wiki/OmniCorp", "id": "omnicorp", "infores_id": "omnicorp", "last_modified_date": "2026-06-02T00:00:00Z", "layout": "resource_detail", "name": "OmniCorp", "products": [{"category": "Product", "description": "Co-occurrence database generated from public PubMed abstracts with entity normalization for Biolink-relevant biomedical concepts", "format": "mixed", "id": "omnicorp.cooccurrence", "name": "OmniCorp Co-occurrence Data", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "omnicorp"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmed"}], "product_url": "https://github.com/NCATSTranslator/Translator-All/wiki/OmniCorp", "secondary_source": [{"relation_type": "prov:used", "source": "biolink"}]}, {"category": "ProgrammingInterface", "description": "API behavior documented for adding co-occurrence counts and literature co-occurrence edges to TRAPI messages", "format": "http", "id": "omnicorp.api", "name": "OmniCorp API", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "omnicorp"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmed"}], "product_url": "https://github.com/NCATSTranslator/Translator-All/wiki/OmniCorp", "secondary_source": [{"relation_type": "prov:used", "source": "biolink"}], "warnings": ["The registry points to the Translator wiki documentation; checked RENCI OmniCorp service URLs were unavailable or had certificate issues on 2026-06-02."]}], "repository": "https://github.com/NCATS-Gamma/omnicorp", "synonyms": ["OmniCorp"], "tags": ["translator"]}