Pathosystems Resource Integration Center
The Pathosystems Resource Integration Center (PATRIC) was a bacterial bioinformatics resource center providing integrated data and analysis tools for bacterial infectious disease research. PATRIC has been succeeded by the Bacterial and Viral Bioinformatics Resource Center (BV-BRC), which continues to provide comprehensive bacterial genomics data, comparative analysis tools, and molecular characterization resources. The legacy PATRIC data and functionality have been integrated into BV-BRC.
[{"category": "Organization", "contact_details": [{"contact_type": "url", "value": "https://www.bv-brc.org/"}], "label": "BV-BRC"}]
[{"category": "GraphicalInterface", "description": "BV-BRC web portal that hosts legacy PATRIC bacterial genomics data and tools alongside expanded viral resources", "format": "http", "id": "patric.web", "name": "PATRIC/BV-BRC Web Portal", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "patric"}, {"relation_type": "prov:hadPrimarySource", "source": "bv-brc"}], "product_url": "https://www.bv-brc.org/"}, {"category": "Product", "description": "Legacy PATRIC bacterial genome data and annotations now available through BV-BRC genome data views and services", "format": "mixed", "id": "patric.genomes", "name": "PATRIC Genome Data", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "patric"}, {"relation_type": "prov:hadPrimarySource", "source": "bv-brc"}], "product_url": "https://www.bv-brc.org/docs/quick_start/data_functionality_overview.html", "warnings": []}, {"category": "ProgrammingInterface", "description": "BV-BRC REST Data API for querying and retrieving public data, including data inherited from PATRIC", "format": "http", "id": "patric.api", "name": "BV-BRC API", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "patric"}, {"relation_type": "prov:hadPrimarySource", "source": "bv-brc"}], "product_url": "https://www.bv-brc.org/docs/system_documentation/system_architecture.html#data-api"}, {"category": "DocumentationProduct", "description": "BV-BRC quick-start overview for PATRIC users, describing how legacy PATRIC data, tools, services, website, and infrastructure were incorporated into BV-BRC", "format": "http", "id": "patric.bv_brc_overview", "name": "BV-BRC Overview for PATRIC Users", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "patric"}, {"relation_type": "prov:hadPrimarySource", "source": "bv-brc"}], "product_url": "https://www.bv-brc.org/docs/quick_start/data_functionality_overview.html", "warnings": []}]
{"activity_status": "inactive", "category": "DataSource", "contacts": [{"category": "Organization", "contact_details": [{"contact_type": "url", "value": "https://www.bv-brc.org/"}], "label": "BV-BRC"}], "creation_date": "2025-11-05T00:00:00Z", "description": "The Pathosystems Resource Integration Center (PATRIC) was a bacterial bioinformatics resource center providing integrated data and analysis tools for bacterial infectious disease research. PATRIC has been succeeded by the Bacterial and Viral Bioinformatics Resource Center (BV-BRC), which continues to provide comprehensive bacterial genomics data, comparative analysis tools, and molecular characterization resources. The legacy PATRIC data and functionality have been integrated into BV-BRC.", "domains": ["genomics", "microbiology", "biomedical"], "homepage_url": "https://www.bv-brc.org/", "id": "patric", "infores_id": "patric", "last_modified_date": "2026-06-02T00:00:00Z", "layout": "resource_detail", "name": "Pathosystems Resource Integration Center", "products": [{"category": "GraphicalInterface", "description": "BV-BRC web portal that hosts legacy PATRIC bacterial genomics data and tools alongside expanded viral resources", "format": "http", "id": "patric.web", "name": "PATRIC/BV-BRC Web Portal", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "patric"}, {"relation_type": "prov:hadPrimarySource", "source": "bv-brc"}], "product_url": "https://www.bv-brc.org/"}, {"category": "Product", "description": "Legacy PATRIC bacterial genome data and annotations now available through BV-BRC genome data views and services", "format": "mixed", "id": "patric.genomes", "name": "PATRIC Genome Data", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "patric"}, {"relation_type": "prov:hadPrimarySource", "source": "bv-brc"}], "product_url": "https://www.bv-brc.org/docs/quick_start/data_functionality_overview.html", "warnings": []}, {"category": "ProgrammingInterface", "description": "BV-BRC REST Data API for querying and retrieving public data, including data inherited from PATRIC", "format": "http", "id": "patric.api", "name": "BV-BRC API", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "patric"}, {"relation_type": "prov:hadPrimarySource", "source": "bv-brc"}], "product_url": "https://www.bv-brc.org/docs/system_documentation/system_architecture.html#data-api"}, {"category": "DocumentationProduct", "description": "BV-BRC quick-start overview for PATRIC users, describing how legacy PATRIC data, tools, services, website, and infrastructure were incorporated into BV-BRC", "format": "http", "id": "patric.bv_brc_overview", "name": "BV-BRC Overview for PATRIC Users", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "patric"}, {"relation_type": "prov:hadPrimarySource", "source": "bv-brc"}], "product_url": "https://www.bv-brc.org/docs/quick_start/data_functionality_overview.html", "warnings": []}], "publications": [{"authors": ["Wattam AR", "Davis JJ", "Assaf R", "Boisvert S", "Brettin T", "Bun C", "Conrad N", "Dietrich EM", "Disz T", "Gabbard JL", "Gerdes S", "Henry CS", "Kenyon RW", "Machi D", "Mao C", "Nordberg EK", "Olsen GJ", "Murphy-Olson DE", "Olson R", "Overbeek R", "Parrello B", "Pusch GD", "Shukla M", "Vonstein V", "Warren A", "Xia F", "Yoo H", "Stevens RL"], "doi": "10.1093/nar/gkw1017", "id": "doi:10.1093/nar/gkw1017", "journal": "Nucleic Acids Research", "preferred": true, "title": "Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center", "year": "2017"}], "synonyms": ["PATRIC", "BV-BRC", "Bacterial and Viral Bioinformatics Resource Center"], "taxon": ["NCBITaxon:2"], "warnings": ["PATRIC has been succeeded by BV-BRC (Bacterial and Viral Bioinformatics Resource Center). The live products listed here are hosted by BV-BRC."]}