Bioteque
A knowledge graph of biological entities and their associations that integrates and formats biomedical data as pre-calculated knowledge graph embeddings
[{"category": "Individual", "contact_details": [{"contact_type": "email", "value": "patrick.aloy@irbbarcelona.org"}], "label": "Patrick Aloy", "orcid": "0000-0002-3557-0236"}, {"category": "Organization", "contact_details": [{"contact_type": "url", "value": "http://sbnb.irbbarcelona.org/"}], "label": "Structural Bioinformatics and Network Biology Group, Institute for Research in Biomedicine (IRB Barcelona)"}]
[{"category": "Product", "description": "Network embeddings of the Bioteque graph that represent biological entities and their associations", "format": "mixed", "id": "bioteque.embeddings", "name": "Bioteque Embeddings", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "achilles"}, {"relation_type": "prov:hadPrimarySource", "source": "bioteque"}, {"relation_type": "prov:hadPrimarySource", "source": "bto"}, {"relation_type": "prov:hadPrimarySource", "source": "ccle"}, {"relation_type": "prov:hadPrimarySource", "source": "cellosaurus"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "chemicalchecker"}, {"relation_type": "prov:hadPrimarySource", "source": "clue"}, {"relation_type": "prov:hadPrimarySource", "source": "compartments"}, {"relation_type": "prov:hadPrimarySource", "source": "corum"}, {"relation_type": "prov:hadPrimarySource", "source": "cosmic"}, {"relation_type": "prov:hadPrimarySource", "source": "creeds"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "depmap"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "dorothea"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "drugcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "gdsc"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gtex"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "huri"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "lincs"}, {"relation_type": "prov:hadPrimarySource", "source": "offsides"}, {"relation_type": "prov:hadPrimarySource", "source": "omnipath"}, {"relation_type": "prov:hadPrimarySource", "source": "opentargets"}, {"relation_type": "prov:hadPrimarySource", "source": "pharmacodb"}, {"relation_type": "prov:hadPrimarySource", "source": "prism"}, {"relation_type": "prov:hadPrimarySource", "source": "progeny"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "repodb"}, {"relation_type": "prov:hadPrimarySource", "source": "repohub"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}], "product_url": "https://bioteque.irbbarcelona.org/downloads/embeddings"}, {"category": "ProcessProduct", "description": "Scripts used to preprocess and accommodate biomedical datasets into the knowledge database behind the Bioteque repository", "id": "bioteque.code", "license": {"id": "https://opensource.org/licenses/MIT", "label": "MIT License"}, "name": "Bioteque code", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bioteque"}], "product_url": "https://gitlabsbnb.irbbarcelona.org/bioteque/bioteque"}, {"category": "ProcessProduct", "description": "BQsupports is a tool to uncover biomedical evidence behind experimental paired data.", "id": "bioteque.bqsupports", "name": "BQsupports", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bioteque"}], "product_url": "https://bioteque.irbbarcelona.org/bqsupports"}]
{"activity_status": "active", "category": "KnowledgeGraph", "contacts": [{"category": "Individual", "contact_details": [{"contact_type": "email", "value": "patrick.aloy@irbbarcelona.org"}], "label": "Patrick Aloy", "orcid": "0000-0002-3557-0236"}, {"category": "Organization", "contact_details": [{"contact_type": "url", "value": "http://sbnb.irbbarcelona.org/"}], "label": "Structural Bioinformatics and Network Biology Group, Institute for Research in Biomedicine (IRB Barcelona)"}], "creation_date": "2025-03-09T00:00:00Z", "description": "A knowledge graph of biological entities and their associations that integrates and formats biomedical data as pre-calculated knowledge graph embeddings", "domains": ["biomedical"], "evaluation_page": "resource/bioteque/bioteque_eval.html", "homepage_url": "https://bioteque.irbbarcelona.org/", "id": "bioteque", "last_modified_date": "2026-06-22T00:00:00Z", "layout": "resource_detail", "name": "Bioteque", "products": [{"category": "Product", "description": "Network embeddings of the Bioteque graph that represent biological entities and their associations", "format": "mixed", "id": "bioteque.embeddings", "name": "Bioteque Embeddings", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "achilles"}, {"relation_type": "prov:hadPrimarySource", "source": "bioteque"}, {"relation_type": "prov:hadPrimarySource", "source": "bto"}, {"relation_type": "prov:hadPrimarySource", "source": "ccle"}, {"relation_type": "prov:hadPrimarySource", "source": "cellosaurus"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "chemicalchecker"}, {"relation_type": "prov:hadPrimarySource", "source": "clue"}, {"relation_type": "prov:hadPrimarySource", "source": "compartments"}, {"relation_type": "prov:hadPrimarySource", "source": "corum"}, {"relation_type": "prov:hadPrimarySource", "source": "cosmic"}, {"relation_type": "prov:hadPrimarySource", "source": "creeds"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "depmap"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "dorothea"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "drugcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "gdsc"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gtex"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "huri"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "lincs"}, {"relation_type": "prov:hadPrimarySource", "source": "offsides"}, {"relation_type": "prov:hadPrimarySource", "source": "omnipath"}, {"relation_type": "prov:hadPrimarySource", "source": "opentargets"}, {"relation_type": "prov:hadPrimarySource", "source": "pharmacodb"}, {"relation_type": "prov:hadPrimarySource", "source": "prism"}, {"relation_type": "prov:hadPrimarySource", "source": "progeny"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "repodb"}, {"relation_type": "prov:hadPrimarySource", "source": "repohub"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}], "product_url": "https://bioteque.irbbarcelona.org/downloads/embeddings"}, {"category": "ProcessProduct", "description": "Scripts used to preprocess and accommodate biomedical datasets into the knowledge database behind the Bioteque repository", "id": "bioteque.code", "license": {"id": "https://opensource.org/licenses/MIT", "label": "MIT License"}, "name": "Bioteque code", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bioteque"}], "product_url": "https://gitlabsbnb.irbbarcelona.org/bioteque/bioteque"}, {"category": "ProcessProduct", "description": "BQsupports is a tool to uncover biomedical evidence behind experimental paired data.", "id": "bioteque.bqsupports", "name": "BQsupports", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bioteque"}], "product_url": "https://bioteque.irbbarcelona.org/bqsupports"}], "publications": [{"authors": ["Adri\u00e0 Fern\u00e1ndez-Torras", "Miquel Duran-Frigola", "Martino Bertoni", "Martina Locatelli", "Patrick Aloy"], "doi": "10.1038/s41467-022-33026-0", "id": "doi:10.1038/s41467-022-33026-0", "journal": "Nature Communications", "title": "Integrating and formatting biomedical data as pre-calculated knowledge graph embeddings in the Bioteque", "year": "2022"}], "repository": "https://gitlabsbnb.irbbarcelona.org/bioteque/bioteque"}