iRefIndex
iRefIndex is a consolidated protein interaction database that aggregates and indexes interaction data from multiple primary databases using sequence-based hash keys to identify and group redundant interaction records while maintaining provenance information.
[]
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"irefindex"}, {"relation_type": "prov:wasDerivedFrom", "source": "mint"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}]}, {"category": "Product", "description": "ReDrugS source code (TurboGears/SADI web application and probabilistic nanopublication pipeline). The hosted service it ran (redrugs.tw.rpi.edu) is no longer available.", "format": "python", "id": "redrugs.source", "name": "ReDrugs Source Code", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "redrugs"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "irefindex"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}, {"relation_type": "prov:hadPrimarySource", "source": "cosmic"}], "product_url": "https://github.com/dlmcguinness/redrugs"}], "publications": [{"authors": ["Razick S", "Magklaras G", "Donaldson IM"], "doi": "10.1186/1471-2105-9-405", "id": "PMID:18823568", "journal": "BMC Bioinformatics", "preferred": true, "title": "iRefIndex: a consolidated protein interaction database with provenance.", "year": "2008"}, {"authors": ["Mora A", "Donaldson IM"], "doi": "10.1186/1471-2105-12-455", "id": "PMID:22115179", "journal": "BMC Bioinformatics", "title": "iRefR: an R package to manipulate the iRefIndex consolidated protein interaction database.", "year": "2011"}, {"authors": ["Razick S", "Mora A", "Michalickova K", "Boddie P", "Donaldson IM"], "doi": "10.1186/1471-2105-12-388", "id": "PMID:21975162", "journal": "BMC Bioinformatics", "title": "iRefScape. A Cytoscape plug-in for visualization and data mining of protein interaction data from iRefIndex.", "year": "2011"}], "warnings": ["The iRefIndex website appears to be inactive as of 2025. Historical data and methods remain available through publications and may be accessible through archived versions."]}