CFDE REVEAL Knowledge Graph
The CFDE REVEAL Knowledge Graph is a statistically inferred genomic evidence graph to integrate and disseminate knowledge within the Common Fund Data Ecosystem (CFDE).
[{"category": "Individual", "contact_details": [{"contact_type": "email", "value": "flannick@broadinstitute.org"}, {"contact_type": "github", "value": "flannick"}], "label": "Jason Flannick"}, {"category": "Individual", "contact_details": [{"contact_type": "email", "value": "burtt@broadinstitute.org"}], "label": "Noel Burtt"}]
[{"category": "GraphicalInterface", "description": "CFDE Knowledge Center web application for natural-language exploration of mechanistic leads, evidence, and hypothesis-generation workflows backed by the CFDE REVEAL graph.", "format": "http", "id": "digcfdekg.portal", "name": "CFDE REVEAL Portal", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "digcfdekg"}], "product_url": "https://cfdeknowledge.org/r/cfde_reveal"}, {"category": "GraphProduct", "description": "Statistically inferred genomic evidence graph connecting genes, gene sets, inferred disease mechanisms, and human phenotypes. Gene sets are derived from eleven NIH Common Fund programs (GlyGen, GTEx, IDG, IMPC/KOMP2, LINCS, MoTrPAC, Bridge2AI, HuBMAP, Metabolomics Workbench, SenNet, and SPARC) and phenotype-gene set relationships are computed with PIGEAN (Priors Inferred from GEne ANnotations).", "format": "http", "id": "digcfdekg.graph", "name": "CFDE REVEAL Knowledge Graph", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "digcfdekg"}, {"relation_type": "prov:hadPrimarySource", "source": "glygen"}, {"relation_type": "prov:hadPrimarySource", "source": "gtex"}, {"relation_type": "prov:hadPrimarySource", "source": "tcrd"}, {"relation_type": "prov:hadPrimarySource", "source": "impc"}, {"relation_type": "prov:hadPrimarySource", "source": "lincs"}, {"relation_type": "prov:hadPrimarySource", "source": "motrpac"}, {"relation_type": "prov:hadPrimarySource", "source": "bridge2ai"}, {"relation_type": "prov:hadPrimarySource", "source": "mw"}, {"relation_type": "prov:hadPrimarySource", "source": "sennet"}, {"relation_type": "prov:hadPrimarySource", "source": "sparc"}], "product_url": "https://cfdeknowledge.org/r/cfde_reveal", "secondary_source": [{"relation_type": "prov:wasInfluencedBy", "source": "hubmap"}]}]
{"activity_status": "active", "category": "KnowledgeGraph", "collection": ["okn"], "contacts": [{"category": "Individual", "contact_details": [{"contact_type": "email", "value": "flannick@broadinstitute.org"}, {"contact_type": "github", "value": "flannick"}], "label": "Jason Flannick"}, {"category": "Individual", "contact_details": [{"contact_type": "email", "value": "burtt@broadinstitute.org"}], "label": "Noel Burtt"}], "creation_date": "2026-05-09T00:00:00Z", "description": "The CFDE REVEAL Knowledge Graph is a statistically inferred genomic evidence graph to integrate and disseminate knowledge within the Common Fund Data Ecosystem (CFDE).", "domains": ["biomedical", "genomics", "systems biology"], "evaluation_page": "resource/digcfdekg/digcfdekg_eval_automated.html", "homepage_url": "https://cfdeknowledge.org/", "id": "digcfdekg", "last_modified_date": "2026-07-01T00:00:00Z", "layout": "resource_detail", "name": "CFDE REVEAL Knowledge Graph", "products": [{"category": "GraphicalInterface", "description": "CFDE Knowledge Center web application for natural-language exploration of mechanistic leads, evidence, and hypothesis-generation workflows backed by the CFDE REVEAL graph.", "format": "http", "id": "digcfdekg.portal", "name": "CFDE REVEAL Portal", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "digcfdekg"}], "product_url": "https://cfdeknowledge.org/r/cfde_reveal"}, {"category": "GraphProduct", "description": "Statistically inferred genomic evidence graph connecting genes, gene sets, inferred disease mechanisms, and human phenotypes. Gene sets are derived from eleven NIH Common Fund programs (GlyGen, GTEx, IDG, IMPC/KOMP2, LINCS, MoTrPAC, Bridge2AI, HuBMAP, Metabolomics Workbench, SenNet, and SPARC) and phenotype-gene set relationships are computed with PIGEAN (Priors Inferred from GEne ANnotations).", "format": "http", "id": "digcfdekg.graph", "name": "CFDE REVEAL Knowledge Graph", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "digcfdekg"}, {"relation_type": "prov:hadPrimarySource", "source": "glygen"}, {"relation_type": "prov:hadPrimarySource", "source": "gtex"}, {"relation_type": "prov:hadPrimarySource", "source": "tcrd"}, {"relation_type": "prov:hadPrimarySource", "source": "impc"}, {"relation_type": "prov:hadPrimarySource", "source": "lincs"}, {"relation_type": "prov:hadPrimarySource", "source": "motrpac"}, {"relation_type": "prov:hadPrimarySource", "source": "bridge2ai"}, {"relation_type": "prov:hadPrimarySource", "source": "mw"}, {"relation_type": "prov:hadPrimarySource", "source": "sennet"}, {"relation_type": "prov:hadPrimarySource", "source": "sparc"}], "product_url": "https://cfdeknowledge.org/r/cfde_reveal", "secondary_source": [{"relation_type": "prov:wasInfluencedBy", "source": "hubmap"}]}]}