name: GNBR
description: The Global Network of Biomedical Relationships (GNBR) is a large-scale biomedical knowledge graph derived from literature. GNBR uses text mining of PubMed abstracts to extract typed relationships between genes, diseases and drugs/chemicals, organizing them into semantic themes suitable for link prediction and downstream applications such as drug repurposing. GNBR has been widely used as a text-derived KG resource and is available via GitHub and Zenodo.
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raw_data: {"activity_status": "active", "category": "KnowledgeGraph", "contacts": [{"category": "Organization", "contact_details": [{"contact_type": "github", "value": "jakelever"}, {"contact_type": "url", "value": "https://github.com/jakelever/GNBR"}], "label": "GNBR"}], "description": "The Global Network of Biomedical Relationships (GNBR) is a large-scale biomedical knowledge graph derived from literature. GNBR uses text mining of PubMed abstracts to extract typed relationships between genes, diseases and drugs/chemicals, organizing them into semantic themes suitable for link prediction and downstream applications such as drug repurposing. GNBR has been widely used as a text-derived KG resource and is available via GitHub and Zenodo.", "domains": ["biomedical", "literature", "health"], "evaluation_page": "resource/gnbr/gnbr_eval.html", "homepage_url": "https://github.com/jakelever/GNBR", "id": "gnbr", "layout": "resource_detail", "name": "GNBR", "products": [{"category": "GraphProduct", "description": "Text-mined biomedical knowledge graph of gene\u2013disease\u2013drug relationships (semantic themes)", "id": "gnbr.graph", "name": "GNBR graph", "original_source": ["pubtator"], "product_url": "https://zenodo.org/records/3459420", "secondary_source": ["gnbr"]}, {"category": "GraphProduct", "description": "Cleaned benchmark graph (PharmKG-8k) with typed relations between genes, chemicals, and diseases", "edge_count": 500958, "id": "pharmkg.graph", "name": "PharmKG graph", "node_count": 7603, "original_source": ["omim", "drugbank", "pharmgkb", "ttd", "sider", "humannet", "ncbigene", "mesh", "pubchem", "gnbr", "biogps", "connectivitymap"], "product_url": "https://zenodo.org/record/4077338", "secondary_source": ["pharmkg"]}], "publications": [{"authors": ["Percha B", "Altman RB"], "doi": "10.1093/bioinformatics/bty114", "id": "doi:10.1093/bioinformatics/bty114", "journal": "Bioinformatics", "title": "A global network of biomedical relationships derived from text", "year": "2018"}], "repository": "https://github.com/jakelever/GNBR"}