iRefIndex
iRefIndex is a consolidated protein interaction database that aggregates and indexes interaction data from multiple primary databases using sequence-based hash keys to identify and group redundant interaction records while maintaining provenance information.
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[{"category": "Product", "description": "Historical consolidated protein interaction index in PSI-MITAB 2.5 format aggregating data from BIND, BioGrid, DIP, HPRD, IntAct, MINT, MPact, MPPI and OPHID", "format": "psi_mi_mitab", "id": "irefindex.database", "name": "iRefIndex Database", "original_source": ["bind", "biogrid", "dip", "hprd", "intact", "mint"]}, {"category": "Product", "description": "R package for accessing and manipulating iRefIndex data", "format": "http", "id": "irefindex.irefr", "name": "iRefR Package", "original_source": ["irefindex"]}, {"category": "Product", "description": "Cytoscape plugin for visualization and data mining of iRefIndex protein interaction data", "id": "irefindex.irefscape", "name": "iRefScape", "original_source": ["irefindex"]}, {"category": "GraphicalInterface", "description": "Web interface for navigating the global protein-protein interaction landscape", "id": "irefindex.irefweb", "name": "iRefWeb", "original_source": ["irefindex"]}]
{"activity_status": "inactive", "category": "Aggregator", "creation_date": "2025-10-30T00:00:00Z", "description": "iRefIndex is a consolidated protein interaction database that aggregates and indexes interaction data from multiple primary databases using sequence-based hash keys to identify and group redundant interaction records while maintaining provenance information.", "domains": ["proteomics", "biological systems"], "homepage_url": "https://irefindex.vib.be/wiki/index.php/iRefIndex", "id": "irefindex", "infores_id": "irefindex", "last_modified_date": "2025-10-30T00:00:00Z", "layout": "resource_detail", "name": "iRefIndex", "products": [{"category": "Product", "description": "Historical consolidated protein interaction index in PSI-MITAB 2.5 format aggregating data from BIND, BioGrid, DIP, HPRD, IntAct, MINT, MPact, MPPI and OPHID", "format": "psi_mi_mitab", "id": "irefindex.database", "name": "iRefIndex Database", "original_source": ["bind", "biogrid", "dip", "hprd", "intact", "mint"]}, {"category": "Product", "description": "R package for accessing and manipulating iRefIndex data", "format": "http", "id": "irefindex.irefr", "name": "iRefR Package", "original_source": ["irefindex"]}, {"category": "Product", "description": "Cytoscape plugin for visualization and data mining of iRefIndex protein interaction data", "id": "irefindex.irefscape", "name": "iRefScape", "original_source": ["irefindex"]}, {"category": "GraphicalInterface", "description": "Web interface for navigating the global protein-protein interaction landscape", "id": "irefindex.irefweb", "name": "iRefWeb", "original_source": ["irefindex"]}], "publications": [{"category": "Publication", "id": "PMID:18823568", "preferred": true}, {"category": "Publication", "id": "PMID:22115179"}, {"category": "Publication", "id": "PMID:21975162"}], "warnings": ["The iRefIndex website appears to be inactive as of 2025. Historical data and methods remain available through publications and may be accessible through archived versions."]}