Bgee - Gene Expression Database
Bgee is a database for retrieval and comparison of gene expression patterns across multiple animal species, providing information about gene expression in different anatomical structures, developmental stages, and species.
[{"category": "Organization", "contact_details": [{"contact_type": "email", "value": "bgee@sib.swiss"}, {"contact_type": "url", "value": "https://www.bgee.org/contact/"}], "id": "sib", "label": "Bgee Team - SIB Swiss Institute of Bioinformatics"}]
[{"category": "GraphicalInterface", "description": "Web interface for exploring Bgee data", "id": "bgee.site", "is_public": true, "name": "Bgee Web Interface", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bgee"}], "product_url": "https://www.bgee.org/"}, {"category": "ProgrammingInterface", "description": "SPARQL endpoint for querying Bgee RDF data", "id": "bgee.sparql", "is_public": true, "name": "Bgee SPARQL Endpoint", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bgee"}], "product_url": "https://www.bgee.org/sparql/"}, {"category": "Product", "compression": "zip", "description": "Complete data dump of Bgee expression data for all species", "format": "tsv", "id": "bgee.expr_calls", "name": "Bgee Expression Calls", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bgee"}], "product_url": "https://www.bgee.org/download/gene-expression-calls"}, {"category": "Product", "compression": "zip", "description": "RDF version of the Bgee data for semantic web applications", "format": "ttl", "id": "bgee.rdf", "name": "Bgee RDF Data", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bgee"}], "product_file_size": 31556493880, "product_url": "https://www.bgee.org/ftp/current/rdf_easybgee.zip"}, {"category": "GraphProduct", "description": "The SPOKE knowledge graph containing nodes and edges from multiple biomedical data sources.", "format": "http", "id": "spoke.graph", "name": "SPOKE Graph", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "bindingdb"}, {"relation_type": "prov:hadPrimarySource", "source": "bv-brc"}, {"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "civic"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "clinicaltrialsgov"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "drugcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "foodb"}, {"relation_type": "prov:hadPrimarySource", "source": "gdsc"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "lincs-l1000"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "metacyc"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}, {"relation_type": "prov:hadPrimarySource", "source": "pathophenodb"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "pid"}, {"relation_type": "prov:hadPrimarySource", "source": "protcid"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmed"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "spoke"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}], "product_url": "https://spoke.ucsf.edu/data-tools"}, {"category": "GraphicalInterface", "description": "A browser interface for a knowledge graph for Alzheimer's Disease.", "format": "http", "id": "alzkb.browser", "name": "AlzKB Graph Database Browser", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "alzkb"}, {"relation_type": "prov:hadPrimarySource", "source": "aop-db"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "dsstox"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "hrpimp"}, {"relation_type": "prov:hadPrimarySource", "source": "lincs-l1000"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "pharmacotherapydb"}, {"relation_type": "prov:hadPrimarySource", "source": "pid"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}], "product_url": "https://alzkb.ai:7473/login", "secondary_source": [{"relation_type": "prov:wasInfluencedBy", "source": "hetionet"}]}, {"category": "GraphProduct", "description": "Memgraph data release for AlzKB.", "id": "alzkb.data", "name": "AlzKB Data Release (Version 2.0.0)", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "alzkb"}, {"relation_type": "prov:hadPrimarySource", "source": "aop-db"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "dsstox"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "hrpimp"}, {"relation_type": "prov:hadPrimarySource", "source": "lincs-l1000"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "pharmacotherapydb"}, {"relation_type": "prov:hadPrimarySource", "source": "pid"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}], "product_url": "https://github.com/EpistasisLab/AlzKB/releases/tag/v2.0.0", "secondary_source": [{"relation_type": "prov:wasInfluencedBy", "source": "hetionet"}]}, {"category": "ProcessProduct", "description": "INDRA CoGEx is a graph database integrating causal relations, ontological relations, properties, and data, assembled at scale automatically from the scientific literature and structured sources. This is the code to build the graph.", "id": "indra.cogex.code", "name": "INDRA CoGEx Build Code", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "nihreporter"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmed"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "cellmarker"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "ccle"}, {"relation_type": "prov:hadPrimarySource", "source": "clinicaltrialsgov"}, {"relation_type": "prov:hadPrimarySource", "source": "indra"}], "product_url": "https://github.com/gyorilab/indra_cogex"}, {"category": "GraphProduct", "description": "KGX Distribution of KG-Monarch", "edge_count": 14998050, "format": "kgx", "id": "kg-monarch.graph", "name": "KGX Distribution of KG-Monarch", "node_categories": ["biolink:AnatomicalEntity", "biolink:BiologicalProcess", "biolink:Case", "biolink:Cell", "biolink:CellularComponent", "biolink:ChemicalEntity", "biolink:Disease", "biolink:Gene", "biolink:Genotype", "biolink:LifeStage", "biolink:MolecularActivity", "biolink:MolecularEntity", "biolink:NamedThing", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:SequenceVariant"], "node_count": 1460060, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "alliance"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "clingen"}, {"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "dictybase"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-monarch"}, {"relation_type": "prov:hadPrimarySource", "source": "maxo"}, {"relation_type": "prov:hadPrimarySource", "source": "panther"}, {"relation_type": "prov:hadPrimarySource", "source": "phenio"}, {"relation_type": "prov:hadPrimarySource", "source": "pombase"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "xenbase"}, {"relation_type": "prov:hadPrimarySource", "source": "zfin"}], "predicates": ["biolink:actively_involved_in", "biolink:acts_upstream_of", "biolink:acts_upstream_of_negative_effect", "biolink:acts_upstream_of_or_within", "biolink:acts_upstream_of_or_within_negative_effect", "biolink:acts_upstream_of_or_within_positive_effect", "biolink:acts_upstream_of_positive_effect", "biolink:applied_to_treat", "biolink:associated_with_increased_likelihood_of", "biolink:caused_by", "biolink:causes", "biolink:colocalizes_with", "biolink:contributes_to", "biolink:disease_has_location", "biolink:disrupts", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:genetically_associated_with", "biolink:has_adverse_event", "biolink:has_disease", "biolink:has_gene", "biolink:has_mode_of_inheritance", "biolink:has_participant", "biolink:has_phenotype", "biolink:has_sequence_variant", "biolink:homologous_to", "biolink:interacts_with", "biolink:is_active_in", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:model_of", "biolink:orthologous_to", "biolink:part_of", "biolink:participates_in", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:treats", "biolink:treats_or_applied_or_studied_to_treat"], "product_file_size": 230877741, "product_url": "http://data.monarchinitiative.org/monarch-kg/latest/monarch-kg.tar.gz"}, {"category": "GraphProduct", "description": "KGX JSON-Lines Distribution of KG-Monarch", "edge_count": 14998050, "format": "kgx-jsonl", "id": "kg-monarch.graph.jsonl", "name": "KGX JSON-L Distribution of KG-Monarch", "node_categories": ["biolink:AnatomicalEntity", "biolink:BiologicalProcess", "biolink:Case", "biolink:Cell", "biolink:CellularComponent", "biolink:ChemicalEntity", "biolink:Disease", "biolink:Gene", "biolink:Genotype", "biolink:LifeStage", "biolink:MolecularActivity", "biolink:MolecularEntity", "biolink:NamedThing", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:SequenceVariant"], "node_count": 1460060, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "alliance"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "clingen"}, {"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "dictybase"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-monarch"}, {"relation_type": "prov:hadPrimarySource", "source": "maxo"}, {"relation_type": "prov:hadPrimarySource", "source": "panther"}, {"relation_type": "prov:hadPrimarySource", "source": "phenio"}, {"relation_type": "prov:hadPrimarySource", "source": "pombase"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "xenbase"}, {"relation_type": "prov:hadPrimarySource", "source": "zfin"}], "predicates": ["biolink:actively_involved_in", "biolink:acts_upstream_of", "biolink:acts_upstream_of_negative_effect", "biolink:acts_upstream_of_or_within", "biolink:acts_upstream_of_or_within_negative_effect", "biolink:acts_upstream_of_or_within_positive_effect", "biolink:acts_upstream_of_positive_effect", "biolink:applied_to_treat", "biolink:associated_with_increased_likelihood_of", "biolink:caused_by", "biolink:causes", "biolink:colocalizes_with", "biolink:contributes_to", "biolink:disease_has_location", "biolink:disrupts", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:genetically_associated_with", "biolink:has_adverse_event", "biolink:has_disease", "biolink:has_gene", "biolink:has_mode_of_inheritance", "biolink:has_participant", "biolink:has_phenotype", "biolink:has_sequence_variant", "biolink:homologous_to", "biolink:interacts_with", "biolink:is_active_in", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:model_of", "biolink:orthologous_to", "biolink:part_of", "biolink:participates_in", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:treats", "biolink:treats_or_applied_or_studied_to_treat"], "product_file_size": 315667976, "product_url": "https://data.monarchinitiative.org/monarch-kg/latest/monarch-kg.jsonl.tar.gz"}, {"category": "GraphProduct", "description": "RDF Distribution of KG-Monarch", "edge_count": 14998050, "format": "rdfxml", "id": "kg-monarch.graph.rdf", "name": "RDF Distribution of KG-Monarch", "node_categories": ["biolink:AnatomicalEntity", "biolink:BiologicalProcess", "biolink:Case", "biolink:Cell", "biolink:CellularComponent", "biolink:ChemicalEntity", "biolink:Disease", "biolink:Gene", "biolink:Genotype", "biolink:LifeStage", "biolink:MolecularActivity", "biolink:MolecularEntity", "biolink:NamedThing", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:SequenceVariant"], "node_count": 1460060, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "alliance"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "clingen"}, {"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "dictybase"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-monarch"}, {"relation_type": "prov:hadPrimarySource", "source": "maxo"}, {"relation_type": "prov:hadPrimarySource", "source": "panther"}, {"relation_type": "prov:hadPrimarySource", "source": "phenio"}, {"relation_type": "prov:hadPrimarySource", "source": "pombase"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "xenbase"}, {"relation_type": "prov:hadPrimarySource", "source": "zfin"}], "predicates": ["biolink:actively_involved_in", "biolink:acts_upstream_of", "biolink:acts_upstream_of_negative_effect", "biolink:acts_upstream_of_or_within", "biolink:acts_upstream_of_or_within_negative_effect", "biolink:acts_upstream_of_or_within_positive_effect", "biolink:acts_upstream_of_positive_effect", "biolink:applied_to_treat", "biolink:associated_with_increased_likelihood_of", "biolink:caused_by", "biolink:causes", "biolink:colocalizes_with", "biolink:contributes_to", "biolink:disease_has_location", "biolink:disrupts", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:genetically_associated_with", "biolink:has_adverse_event", "biolink:has_disease", "biolink:has_gene", "biolink:has_mode_of_inheritance", "biolink:has_participant", "biolink:has_phenotype", "biolink:has_sequence_variant", "biolink:homologous_to", "biolink:interacts_with", "biolink:is_active_in", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:model_of", "biolink:orthologous_to", "biolink:part_of", "biolink:participates_in", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:treats", "biolink:treats_or_applied_or_studied_to_treat"], "product_file_size": 879238775, "product_url": "https://data.monarchinitiative.org/monarch-kg/latest/monarch-kg.nt.gz"}, {"category": "GraphProduct", "description": "Neo4j Dump of KG-Monarch", "dump_format": "neo4j", "edge_count": 14998050, "id": "kg-monarch.graph.neo4j", "name": "Neo4j Dump of KG-Monarch", "node_categories": ["biolink:AnatomicalEntity", "biolink:BiologicalProcess", "biolink:Case", "biolink:Cell", "biolink:CellularComponent", "biolink:ChemicalEntity", "biolink:Disease", "biolink:Gene", "biolink:Genotype", "biolink:LifeStage", "biolink:MolecularActivity", "biolink:MolecularEntity", "biolink:NamedThing", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:SequenceVariant"], "node_count": 1460060, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "alliance"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "clingen"}, {"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "dictybase"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-monarch"}, {"relation_type": "prov:hadPrimarySource", "source": "maxo"}, {"relation_type": "prov:hadPrimarySource", "source": "panther"}, {"relation_type": "prov:hadPrimarySource", "source": "phenio"}, {"relation_type": "prov:hadPrimarySource", "source": "pombase"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "xenbase"}, {"relation_type": "prov:hadPrimarySource", "source": "zfin"}], "predicates": ["biolink:actively_involved_in", "biolink:acts_upstream_of", "biolink:acts_upstream_of_negative_effect", "biolink:acts_upstream_of_or_within", "biolink:acts_upstream_of_or_within_negative_effect", "biolink:acts_upstream_of_or_within_positive_effect", "biolink:acts_upstream_of_positive_effect", "biolink:applied_to_treat", "biolink:associated_with_increased_likelihood_of", "biolink:caused_by", "biolink:causes", "biolink:colocalizes_with", "biolink:contributes_to", "biolink:disease_has_location", "biolink:disrupts", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:genetically_associated_with", "biolink:has_adverse_event", "biolink:has_disease", "biolink:has_gene", "biolink:has_mode_of_inheritance", "biolink:has_participant", "biolink:has_phenotype", "biolink:has_sequence_variant", "biolink:homologous_to", "biolink:interacts_with", "biolink:is_active_in", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:model_of", "biolink:orthologous_to", "biolink:part_of", "biolink:participates_in", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:treats", "biolink:treats_or_applied_or_studied_to_treat"], "product_file_size": 1438250397, "product_url": "https://data.monarchinitiative.org/monarch-kg/latest/monarch-kg.neo4j.dump", "warnings": []}, {"category": "GraphProduct", "description": "DuckDB database of KG-Monarch", "edge_count": 14998050, "id": "kg-monarch.graph.duckdb", "name": "DuckDB database of KG-Monarch", "node_categories": ["biolink:AnatomicalEntity", "biolink:BiologicalProcess", "biolink:Case", "biolink:Cell", "biolink:CellularComponent", "biolink:ChemicalEntity", "biolink:Disease", "biolink:Gene", "biolink:Genotype", "biolink:LifeStage", "biolink:MolecularActivity", "biolink:MolecularEntity", "biolink:NamedThing", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:SequenceVariant"], "node_count": 1460060, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "alliance"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "clingen"}, {"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "dictybase"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-monarch"}, {"relation_type": "prov:hadPrimarySource", "source": "maxo"}, {"relation_type": "prov:hadPrimarySource", "source": "panther"}, {"relation_type": "prov:hadPrimarySource", "source": "phenio"}, {"relation_type": "prov:hadPrimarySource", "source": "pombase"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "xenbase"}, {"relation_type": "prov:hadPrimarySource", "source": "zfin"}], "predicates": ["biolink:actively_involved_in", "biolink:acts_upstream_of", "biolink:acts_upstream_of_negative_effect", "biolink:acts_upstream_of_or_within", "biolink:acts_upstream_of_or_within_negative_effect", "biolink:acts_upstream_of_or_within_positive_effect", "biolink:acts_upstream_of_positive_effect", "biolink:applied_to_treat", "biolink:associated_with_increased_likelihood_of", "biolink:caused_by", "biolink:causes", "biolink:colocalizes_with", "biolink:contributes_to", "biolink:disease_has_location", "biolink:disrupts", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:genetically_associated_with", "biolink:has_adverse_event", "biolink:has_disease", "biolink:has_gene", "biolink:has_mode_of_inheritance", "biolink:has_participant", "biolink:has_phenotype", "biolink:has_sequence_variant", "biolink:homologous_to", "biolink:interacts_with", "biolink:is_active_in", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:model_of", "biolink:orthologous_to", "biolink:part_of", "biolink:participates_in", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:treats", "biolink:treats_or_applied_or_studied_to_treat"], "product_file_size": 6827814912, "product_url": "https://data.monarchinitiative.org/monarch-kg/latest/monarch-kg.duckdb"}, {"category": "GraphProduct", "description": "KGX JSON-Lines Distribution of KG-Monarch (Edges)", "edge_count": 14998050, "format": "kgx-jsonl", "id": "kg-monarch.graph.jsonl.edges", "name": "KGX JSON-L Distribution of KG-Monarch Edges", "node_categories": ["biolink:AnatomicalEntity", "biolink:BiologicalProcess", "biolink:Case", "biolink:Cell", "biolink:CellularComponent", "biolink:ChemicalEntity", "biolink:Disease", "biolink:Gene", "biolink:Genotype", "biolink:LifeStage", "biolink:MolecularActivity", "biolink:MolecularEntity", "biolink:NamedThing", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:SequenceVariant"], "node_count": 1460060, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "alliance"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "clingen"}, {"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "dictybase"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-monarch"}, {"relation_type": "prov:hadPrimarySource", "source": "maxo"}, {"relation_type": "prov:hadPrimarySource", "source": "panther"}, {"relation_type": "prov:hadPrimarySource", "source": "phenio"}, {"relation_type": "prov:hadPrimarySource", "source": "pombase"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "xenbase"}, {"relation_type": "prov:hadPrimarySource", "source": "zfin"}], "predicates": ["biolink:actively_involved_in", "biolink:acts_upstream_of", "biolink:acts_upstream_of_negative_effect", "biolink:acts_upstream_of_or_within", "biolink:acts_upstream_of_or_within_negative_effect", "biolink:acts_upstream_of_or_within_positive_effect", "biolink:acts_upstream_of_positive_effect", "biolink:applied_to_treat", "biolink:associated_with_increased_likelihood_of", "biolink:caused_by", "biolink:causes", "biolink:colocalizes_with", "biolink:contributes_to", "biolink:disease_has_location", "biolink:disrupts", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:genetically_associated_with", "biolink:has_adverse_event", "biolink:has_disease", "biolink:has_gene", "biolink:has_mode_of_inheritance", "biolink:has_participant", "biolink:has_phenotype", "biolink:has_sequence_variant", "biolink:homologous_to", "biolink:interacts_with", "biolink:is_active_in", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:model_of", "biolink:orthologous_to", "biolink:part_of", "biolink:participates_in", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:treats", "biolink:treats_or_applied_or_studied_to_treat"], "product_file_size": 15279494795, "product_url": "https://data.monarchinitiative.org/monarch-kg/latest/monarch-kg_edges.jsonl"}, {"category": "GraphProduct", "description": "KGX JSON-Lines Distribution of KG-Monarch (Nodes)", "edge_count": 14998050, "format": "kgx-jsonl", "id": "kg-monarch.graph.jsonl.nodes", "name": "KGX JSON-L Distribution of KG-Monarch Nodes", "node_categories": ["biolink:AnatomicalEntity", "biolink:BiologicalProcess", "biolink:Case", "biolink:Cell", "biolink:CellularComponent", "biolink:ChemicalEntity", "biolink:Disease", "biolink:Gene", "biolink:Genotype", "biolink:LifeStage", "biolink:MolecularActivity", "biolink:MolecularEntity", "biolink:NamedThing", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:SequenceVariant"], "node_count": 1460060, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "alliance"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "clingen"}, {"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "dictybase"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-monarch"}, {"relation_type": "prov:hadPrimarySource", "source": "maxo"}, {"relation_type": "prov:hadPrimarySource", "source": "panther"}, {"relation_type": "prov:hadPrimarySource", "source": "phenio"}, {"relation_type": "prov:hadPrimarySource", "source": "pombase"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "xenbase"}, {"relation_type": "prov:hadPrimarySource", "source": "zfin"}], "predicates": ["biolink:actively_involved_in", "biolink:acts_upstream_of", "biolink:acts_upstream_of_negative_effect", "biolink:acts_upstream_of_or_within", "biolink:acts_upstream_of_or_within_negative_effect", "biolink:acts_upstream_of_or_within_positive_effect", "biolink:acts_upstream_of_positive_effect", "biolink:applied_to_treat", "biolink:associated_with_increased_likelihood_of", "biolink:caused_by", "biolink:causes", "biolink:colocalizes_with", "biolink:contributes_to", "biolink:disease_has_location", "biolink:disrupts", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:genetically_associated_with", "biolink:has_adverse_event", "biolink:has_disease", "biolink:has_gene", "biolink:has_mode_of_inheritance", "biolink:has_participant", "biolink:has_phenotype", "biolink:has_sequence_variant", "biolink:homologous_to", "biolink:interacts_with", "biolink:is_active_in", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:model_of", "biolink:orthologous_to", "biolink:part_of", "biolink:participates_in", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:treats", "biolink:treats_or_applied_or_studied_to_treat"], "product_file_size": 1149505896, "product_url": "https://data.monarchinitiative.org/monarch-kg/latest/monarch-kg_nodes.jsonl"}, {"category": "GraphProduct", "description": "Neo4j Dump of KG-Monarch Edges", "edge_count": 14998050, "format": "neo4j", "id": "kg-monarch.graph.neo4j.edges", "name": "Neo4j Dump of KG-Monarch Edges", "node_categories": ["biolink:AnatomicalEntity", "biolink:BiologicalProcess", "biolink:Case", "biolink:Cell", "biolink:CellularComponent", "biolink:ChemicalEntity", "biolink:Disease", "biolink:Gene", "biolink:Genotype", "biolink:LifeStage", "biolink:MolecularActivity", "biolink:MolecularEntity", "biolink:NamedThing", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:SequenceVariant"], "node_count": 1460060, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "alliance"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "clingen"}, {"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "dictybase"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-monarch"}, {"relation_type": "prov:hadPrimarySource", "source": "maxo"}, {"relation_type": "prov:hadPrimarySource", "source": "panther"}, {"relation_type": "prov:hadPrimarySource", "source": "phenio"}, {"relation_type": "prov:hadPrimarySource", "source": "pombase"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "xenbase"}, {"relation_type": "prov:hadPrimarySource", "source": "zfin"}], "predicates": ["biolink:actively_involved_in", "biolink:acts_upstream_of", "biolink:acts_upstream_of_negative_effect", "biolink:acts_upstream_of_or_within", "biolink:acts_upstream_of_or_within_negative_effect", "biolink:acts_upstream_of_or_within_positive_effect", "biolink:acts_upstream_of_positive_effect", "biolink:applied_to_treat", "biolink:associated_with_increased_likelihood_of", "biolink:caused_by", "biolink:causes", "biolink:colocalizes_with", "biolink:contributes_to", "biolink:disease_has_location", "biolink:disrupts", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:genetically_associated_with", "biolink:has_adverse_event", "biolink:has_disease", "biolink:has_gene", "biolink:has_mode_of_inheritance", "biolink:has_participant", "biolink:has_phenotype", "biolink:has_sequence_variant", "biolink:homologous_to", "biolink:interacts_with", "biolink:is_active_in", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:model_of", "biolink:orthologous_to", "biolink:part_of", "biolink:participates_in", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:treats", "biolink:treats_or_applied_or_studied_to_treat"], "product_file_size": 4386388748, "product_url": "https://data.monarchinitiative.org/monarch-kg/latest/monarch-kg_edges.neo4j.csv"}, {"category": "GraphProduct", "description": "Neo4j Dump of KG-Monarch Nodes", "edge_count": 14998050, "format": "neo4j", "id": "kg-monarch.graph.neo4j.nodes", "name": "Neo4j Dump of KG-Monarch Nodes", "node_categories": ["biolink:AnatomicalEntity", "biolink:BiologicalProcess", "biolink:Case", "biolink:Cell", "biolink:CellularComponent", "biolink:ChemicalEntity", "biolink:Disease", "biolink:Gene", "biolink:Genotype", "biolink:LifeStage", "biolink:MolecularActivity", "biolink:MolecularEntity", "biolink:NamedThing", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:SequenceVariant"], "node_count": 1460060, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "alliance"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "clingen"}, {"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "dictybase"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-monarch"}, {"relation_type": "prov:hadPrimarySource", "source": "maxo"}, {"relation_type": "prov:hadPrimarySource", "source": "panther"}, {"relation_type": "prov:hadPrimarySource", "source": "phenio"}, {"relation_type": "prov:hadPrimarySource", "source": "pombase"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "xenbase"}, {"relation_type": "prov:hadPrimarySource", "source": "zfin"}], "predicates": ["biolink:actively_involved_in", "biolink:acts_upstream_of", "biolink:acts_upstream_of_negative_effect", "biolink:acts_upstream_of_or_within", "biolink:acts_upstream_of_or_within_negative_effect", "biolink:acts_upstream_of_or_within_positive_effect", "biolink:acts_upstream_of_positive_effect", "biolink:applied_to_treat", "biolink:associated_with_increased_likelihood_of", "biolink:caused_by", "biolink:causes", "biolink:colocalizes_with", "biolink:contributes_to", "biolink:disease_has_location", "biolink:disrupts", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:genetically_associated_with", "biolink:has_adverse_event", "biolink:has_disease", "biolink:has_gene", "biolink:has_mode_of_inheritance", "biolink:has_participant", "biolink:has_phenotype", "biolink:has_sequence_variant", "biolink:homologous_to", "biolink:interacts_with", "biolink:is_active_in", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:model_of", "biolink:orthologous_to", "biolink:part_of", "biolink:participates_in", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:treats", "biolink:treats_or_applied_or_studied_to_treat"], "product_file_size": 349573789, "product_url": "https://data.monarchinitiative.org/monarch-kg/latest/monarch-kg_nodes.neo4j.csv"}, {"category": "Product", "description": "Gene expression data aggregated from GTEx, BioGPS, Bgee and other expression databases", "format": "http", "id": "genecards.expression.data", "name": "GeneCards Expression Data", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "biogps"}, {"relation_type": "prov:hadPrimarySource", "source": "genecards"}, {"relation_type": "prov:hadPrimarySource", "source": "gtex"}], "product_url": "https://www.genecards.org/", "warnings": ["File was not able to be retrieved when checked on 2026-06-05: HTTP 403 error when accessing file", "File was not able to be retrieved when checked on 2026-03-30_ HTTP 403 error when accessing file"]}, {"category": "GraphProduct", "description": "The integrative Biomedical Knowledge Hub (iBKH) knowledge graph, harmonizing and integrating information from diverse biomedical resources including DRKG, iDISK, and multiple databases (BRENDA, CTD, DrugBank, KEGG, PharmGKB, Reactome, SIDER, and others).", "id": "ibkh.graph", "name": "iBKH Knowledge Graph", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "brenda"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "drkg"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "ibkh"}, {"relation_type": "prov:hadPrimarySource", "source": "idisk"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "pharmgkb"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}]}, {"category": "GraphProduct", "compatibility": [{"standard": "biolink", "version": "4.3.6"}], "description": "KGX JSONL graph package for Bgee - Gene Expression Database distributed via the NCATS Translator release site (release 2026_03_06; build bgee_15.2_a4fc19df_2025sep1_4.3.6; source version 15.2; Biolink 4.3.6; Node Normalizer 2025sep1).", "edge_count": 4654943, "format": "kgx-jsonl", "id": "translator.bgee.graph", "latest_version": "2026_03_06", "license": {"id": "https://opensource.org/license/mit/", "label": "MIT"}, "name": "Translator Bgee KGX Graph", "node_count": 74689, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "translator"}], "product_url": "https://kgx-storage.rtx.ai/releases/bgee/latest/", "versions": ["2026_03_06", "bgee_15.2_a4fc19df_2025sep1_4.3.6"]}, {"category": "GraphProduct", "compatibility": [{"standard": "biolink", "version": "4.3.6"}], "description": "Aggregated KGX JSONL graph package combining 29 Translator release sources (release 2026_03_27; build 423af7989cac; Biolink 4.3.6; Node Normalizer 2025sep1).", "edge_count": 29243943, "format": "kgx-jsonl", "id": "translator.translator_kg.graph", "latest_version": "2026_03_27", "license": {"id": "https://opensource.org/license/mit/", "label": "MIT"}, "name": "Translator Aggregate KGX Graph", "node_count": 1696790, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "alliance"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "bindingdb"}, {"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "cohd"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "ctkp"}, {"relation_type": "prov:hadPrimarySource", "source": "dgidb"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "drug-approvals-kp"}, {"relation_type": "prov:hadPrimarySource", "source": "drugcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "drugrephub"}, {"relation_type": "prov:hadPrimarySource", "source": "gene2phenotype"}, {"relation_type": "prov:hadPrimarySource", "source": "geneticskp"}, {"relation_type": "prov:hadPrimarySource", "source": "go-cam"}, {"relation_type": "prov:hadPrimarySource", "source": "goa"}, {"relation_type": "prov:hadPrimarySource", "source": "gtopdb"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "icees-kg"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "panther"}, {"relation_type": "prov:hadPrimarySource", "source": "pathbank"}, {"relation_type": "prov:hadPrimarySource", "source": "semmeddb"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "signor"}, {"relation_type": "prov:hadPrimarySource", "source": "text-mining-kp"}, {"relation_type": "prov:hadPrimarySource", "source": "translator"}, {"relation_type": "prov:hadPrimarySource", "source": "ttd"}, {"relation_type": "prov:hadPrimarySource", "source": "ubergraph"}], "product_url": "https://kgx-storage.rtx.ai/releases/translator_kg/latest/", "versions": ["2026_03_27", "423af7989cac"]}]
{"activity_status": "active", "category": "DataSource", "contacts": [{"category": "Organization", "contact_details": [{"contact_type": "email", "value": "bgee@sib.swiss"}, {"contact_type": "url", "value": "https://www.bgee.org/contact/"}], "id": "sib", "label": "Bgee Team - SIB Swiss Institute of Bioinformatics"}], "creation_date": "2025-05-07T00:00:00Z", "description": "Bgee is a database for retrieval and comparison of gene expression patterns across multiple animal species, providing information about gene expression in different anatomical structures, developmental stages, and species.", "domains": ["biological systems", "organisms"], "homepage_url": "https://www.bgee.org/", "id": "bgee", "infores_id": "bgee", "last_modified_date": "2026-02-20T00:00:00Z", "layout": "resource_detail", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC-BY-4.0", "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png"}, "name": "Bgee - Gene Expression Database", "products": [{"category": "GraphicalInterface", "description": "Web interface for exploring Bgee data", "id": "bgee.site", "is_public": true, "name": "Bgee Web Interface", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bgee"}], "product_url": "https://www.bgee.org/"}, {"category": "ProgrammingInterface", "description": "SPARQL endpoint for querying Bgee RDF data", "id": "bgee.sparql", "is_public": true, "name": "Bgee SPARQL Endpoint", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bgee"}], "product_url": "https://www.bgee.org/sparql/"}, {"category": "Product", "compression": "zip", "description": "Complete data dump of Bgee expression data for all species", "format": "tsv", "id": "bgee.expr_calls", "name": "Bgee Expression Calls", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bgee"}], "product_url": "https://www.bgee.org/download/gene-expression-calls"}, {"category": "Product", "compression": "zip", "description": "RDF version of the Bgee data for semantic web applications", "format": "ttl", "id": "bgee.rdf", "name": "Bgee RDF Data", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bgee"}], "product_file_size": 31556493880, "product_url": "https://www.bgee.org/ftp/current/rdf_easybgee.zip"}, {"category": "GraphProduct", "description": "The SPOKE knowledge graph containing nodes and edges from multiple biomedical data sources.", "format": "http", "id": "spoke.graph", "name": "SPOKE Graph", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "bindingdb"}, {"relation_type": "prov:hadPrimarySource", "source": "bv-brc"}, {"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "civic"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "clinicaltrialsgov"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "drugcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "foodb"}, {"relation_type": "prov:hadPrimarySource", "source": "gdsc"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "lincs-l1000"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "metacyc"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}, {"relation_type": "prov:hadPrimarySource", "source": "pathophenodb"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "pid"}, {"relation_type": "prov:hadPrimarySource", "source": "protcid"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmed"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "spoke"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}], "product_url": "https://spoke.ucsf.edu/data-tools"}, {"category": "GraphicalInterface", "description": "A browser interface for a knowledge graph for Alzheimer's Disease.", "format": "http", "id": "alzkb.browser", "name": "AlzKB Graph Database Browser", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "alzkb"}, {"relation_type": "prov:hadPrimarySource", "source": "aop-db"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "dsstox"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "hrpimp"}, {"relation_type": "prov:hadPrimarySource", "source": "lincs-l1000"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "pharmacotherapydb"}, {"relation_type": "prov:hadPrimarySource", "source": "pid"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}], "product_url": "https://alzkb.ai:7473/login", "secondary_source": [{"relation_type": "prov:wasInfluencedBy", "source": "hetionet"}]}, {"category": "GraphProduct", "description": "Memgraph data release for AlzKB.", "id": "alzkb.data", "name": "AlzKB Data Release (Version 2.0.0)", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "alzkb"}, {"relation_type": "prov:hadPrimarySource", "source": "aop-db"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "dsstox"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "hrpimp"}, {"relation_type": "prov:hadPrimarySource", "source": "lincs-l1000"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "pharmacotherapydb"}, {"relation_type": "prov:hadPrimarySource", "source": "pid"}, {"relation_type": "prov:hadPrimarySource", "source": "pubchem"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}], "product_url": "https://github.com/EpistasisLab/AlzKB/releases/tag/v2.0.0", "secondary_source": [{"relation_type": "prov:wasInfluencedBy", "source": "hetionet"}]}, {"category": "ProcessProduct", "description": "INDRA CoGEx is a graph database integrating causal relations, ontological relations, properties, and data, assembled at scale automatically from the scientific literature and structured sources. This is the code to build the graph.", "id": "indra.cogex.code", "name": "INDRA CoGEx Build Code", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "nihreporter"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmed"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "cellmarker"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "ccle"}, {"relation_type": "prov:hadPrimarySource", "source": "clinicaltrialsgov"}, {"relation_type": "prov:hadPrimarySource", "source": "indra"}], "product_url": "https://github.com/gyorilab/indra_cogex"}, {"category": "GraphProduct", "description": "KGX Distribution of KG-Monarch", "edge_count": 14998050, "format": "kgx", "id": "kg-monarch.graph", "name": "KGX Distribution of KG-Monarch", "node_categories": ["biolink:AnatomicalEntity", "biolink:BiologicalProcess", "biolink:Case", "biolink:Cell", "biolink:CellularComponent", "biolink:ChemicalEntity", "biolink:Disease", "biolink:Gene", "biolink:Genotype", "biolink:LifeStage", "biolink:MolecularActivity", "biolink:MolecularEntity", "biolink:NamedThing", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:SequenceVariant"], "node_count": 1460060, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "alliance"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "clingen"}, {"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "dictybase"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-monarch"}, {"relation_type": "prov:hadPrimarySource", "source": "maxo"}, {"relation_type": "prov:hadPrimarySource", "source": "panther"}, {"relation_type": "prov:hadPrimarySource", "source": "phenio"}, {"relation_type": "prov:hadPrimarySource", "source": "pombase"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "xenbase"}, {"relation_type": "prov:hadPrimarySource", "source": "zfin"}], "predicates": ["biolink:actively_involved_in", "biolink:acts_upstream_of", "biolink:acts_upstream_of_negative_effect", "biolink:acts_upstream_of_or_within", "biolink:acts_upstream_of_or_within_negative_effect", "biolink:acts_upstream_of_or_within_positive_effect", "biolink:acts_upstream_of_positive_effect", "biolink:applied_to_treat", "biolink:associated_with_increased_likelihood_of", "biolink:caused_by", "biolink:causes", "biolink:colocalizes_with", "biolink:contributes_to", "biolink:disease_has_location", "biolink:disrupts", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:genetically_associated_with", "biolink:has_adverse_event", "biolink:has_disease", "biolink:has_gene", "biolink:has_mode_of_inheritance", "biolink:has_participant", "biolink:has_phenotype", "biolink:has_sequence_variant", "biolink:homologous_to", "biolink:interacts_with", "biolink:is_active_in", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:model_of", "biolink:orthologous_to", "biolink:part_of", "biolink:participates_in", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:treats", "biolink:treats_or_applied_or_studied_to_treat"], "product_file_size": 230877741, "product_url": "http://data.monarchinitiative.org/monarch-kg/latest/monarch-kg.tar.gz"}, {"category": "GraphProduct", "description": "KGX JSON-Lines Distribution of KG-Monarch", "edge_count": 14998050, "format": "kgx-jsonl", "id": "kg-monarch.graph.jsonl", "name": "KGX JSON-L Distribution of KG-Monarch", "node_categories": ["biolink:AnatomicalEntity", "biolink:BiologicalProcess", "biolink:Case", "biolink:Cell", "biolink:CellularComponent", "biolink:ChemicalEntity", "biolink:Disease", "biolink:Gene", "biolink:Genotype", "biolink:LifeStage", "biolink:MolecularActivity", "biolink:MolecularEntity", "biolink:NamedThing", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:SequenceVariant"], "node_count": 1460060, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "alliance"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "clingen"}, {"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "dictybase"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-monarch"}, {"relation_type": "prov:hadPrimarySource", "source": "maxo"}, {"relation_type": "prov:hadPrimarySource", "source": "panther"}, {"relation_type": "prov:hadPrimarySource", "source": "phenio"}, {"relation_type": "prov:hadPrimarySource", "source": "pombase"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "xenbase"}, {"relation_type": "prov:hadPrimarySource", "source": "zfin"}], "predicates": ["biolink:actively_involved_in", "biolink:acts_upstream_of", "biolink:acts_upstream_of_negative_effect", "biolink:acts_upstream_of_or_within", "biolink:acts_upstream_of_or_within_negative_effect", "biolink:acts_upstream_of_or_within_positive_effect", "biolink:acts_upstream_of_positive_effect", "biolink:applied_to_treat", "biolink:associated_with_increased_likelihood_of", "biolink:caused_by", "biolink:causes", "biolink:colocalizes_with", "biolink:contributes_to", "biolink:disease_has_location", "biolink:disrupts", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:genetically_associated_with", "biolink:has_adverse_event", "biolink:has_disease", "biolink:has_gene", "biolink:has_mode_of_inheritance", "biolink:has_participant", "biolink:has_phenotype", "biolink:has_sequence_variant", "biolink:homologous_to", "biolink:interacts_with", "biolink:is_active_in", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:model_of", "biolink:orthologous_to", "biolink:part_of", "biolink:participates_in", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:treats", "biolink:treats_or_applied_or_studied_to_treat"], "product_file_size": 315667976, "product_url": "https://data.monarchinitiative.org/monarch-kg/latest/monarch-kg.jsonl.tar.gz"}, {"category": "GraphProduct", "description": "RDF Distribution of KG-Monarch", "edge_count": 14998050, "format": "rdfxml", "id": "kg-monarch.graph.rdf", "name": "RDF Distribution of KG-Monarch", "node_categories": ["biolink:AnatomicalEntity", "biolink:BiologicalProcess", "biolink:Case", "biolink:Cell", "biolink:CellularComponent", "biolink:ChemicalEntity", "biolink:Disease", "biolink:Gene", "biolink:Genotype", "biolink:LifeStage", "biolink:MolecularActivity", "biolink:MolecularEntity", "biolink:NamedThing", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:SequenceVariant"], "node_count": 1460060, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "alliance"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "clingen"}, {"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "dictybase"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-monarch"}, {"relation_type": "prov:hadPrimarySource", "source": "maxo"}, {"relation_type": "prov:hadPrimarySource", "source": "panther"}, {"relation_type": "prov:hadPrimarySource", "source": "phenio"}, {"relation_type": "prov:hadPrimarySource", "source": "pombase"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "xenbase"}, {"relation_type": "prov:hadPrimarySource", "source": "zfin"}], "predicates": ["biolink:actively_involved_in", "biolink:acts_upstream_of", "biolink:acts_upstream_of_negative_effect", "biolink:acts_upstream_of_or_within", "biolink:acts_upstream_of_or_within_negative_effect", "biolink:acts_upstream_of_or_within_positive_effect", "biolink:acts_upstream_of_positive_effect", "biolink:applied_to_treat", "biolink:associated_with_increased_likelihood_of", "biolink:caused_by", "biolink:causes", "biolink:colocalizes_with", "biolink:contributes_to", "biolink:disease_has_location", "biolink:disrupts", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:genetically_associated_with", "biolink:has_adverse_event", "biolink:has_disease", "biolink:has_gene", "biolink:has_mode_of_inheritance", "biolink:has_participant", "biolink:has_phenotype", "biolink:has_sequence_variant", "biolink:homologous_to", "biolink:interacts_with", "biolink:is_active_in", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:model_of", "biolink:orthologous_to", "biolink:part_of", "biolink:participates_in", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:treats", "biolink:treats_or_applied_or_studied_to_treat"], "product_file_size": 879238775, "product_url": "https://data.monarchinitiative.org/monarch-kg/latest/monarch-kg.nt.gz"}, {"category": "GraphProduct", "description": "Neo4j Dump of KG-Monarch", "dump_format": "neo4j", "edge_count": 14998050, "id": "kg-monarch.graph.neo4j", "name": "Neo4j Dump of KG-Monarch", "node_categories": ["biolink:AnatomicalEntity", "biolink:BiologicalProcess", "biolink:Case", "biolink:Cell", "biolink:CellularComponent", "biolink:ChemicalEntity", "biolink:Disease", "biolink:Gene", "biolink:Genotype", "biolink:LifeStage", "biolink:MolecularActivity", "biolink:MolecularEntity", "biolink:NamedThing", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:SequenceVariant"], "node_count": 1460060, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "alliance"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "clingen"}, {"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "dictybase"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-monarch"}, {"relation_type": "prov:hadPrimarySource", "source": "maxo"}, {"relation_type": "prov:hadPrimarySource", "source": "panther"}, {"relation_type": "prov:hadPrimarySource", "source": "phenio"}, {"relation_type": "prov:hadPrimarySource", "source": "pombase"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "xenbase"}, {"relation_type": "prov:hadPrimarySource", "source": "zfin"}], "predicates": ["biolink:actively_involved_in", "biolink:acts_upstream_of", "biolink:acts_upstream_of_negative_effect", "biolink:acts_upstream_of_or_within", "biolink:acts_upstream_of_or_within_negative_effect", "biolink:acts_upstream_of_or_within_positive_effect", "biolink:acts_upstream_of_positive_effect", "biolink:applied_to_treat", "biolink:associated_with_increased_likelihood_of", "biolink:caused_by", "biolink:causes", "biolink:colocalizes_with", "biolink:contributes_to", "biolink:disease_has_location", "biolink:disrupts", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:genetically_associated_with", "biolink:has_adverse_event", "biolink:has_disease", "biolink:has_gene", "biolink:has_mode_of_inheritance", "biolink:has_participant", "biolink:has_phenotype", "biolink:has_sequence_variant", "biolink:homologous_to", "biolink:interacts_with", "biolink:is_active_in", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:model_of", "biolink:orthologous_to", "biolink:part_of", "biolink:participates_in", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:treats", "biolink:treats_or_applied_or_studied_to_treat"], "product_file_size": 1438250397, "product_url": "https://data.monarchinitiative.org/monarch-kg/latest/monarch-kg.neo4j.dump", "warnings": []}, {"category": "GraphProduct", "description": "DuckDB database of KG-Monarch", "edge_count": 14998050, "id": "kg-monarch.graph.duckdb", "name": "DuckDB database of KG-Monarch", "node_categories": ["biolink:AnatomicalEntity", "biolink:BiologicalProcess", "biolink:Case", "biolink:Cell", "biolink:CellularComponent", "biolink:ChemicalEntity", "biolink:Disease", "biolink:Gene", "biolink:Genotype", "biolink:LifeStage", "biolink:MolecularActivity", "biolink:MolecularEntity", "biolink:NamedThing", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:SequenceVariant"], "node_count": 1460060, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "alliance"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "clingen"}, {"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "dictybase"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-monarch"}, {"relation_type": "prov:hadPrimarySource", "source": "maxo"}, {"relation_type": "prov:hadPrimarySource", "source": "panther"}, {"relation_type": "prov:hadPrimarySource", "source": "phenio"}, {"relation_type": "prov:hadPrimarySource", "source": "pombase"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "xenbase"}, {"relation_type": "prov:hadPrimarySource", "source": "zfin"}], "predicates": ["biolink:actively_involved_in", "biolink:acts_upstream_of", "biolink:acts_upstream_of_negative_effect", "biolink:acts_upstream_of_or_within", "biolink:acts_upstream_of_or_within_negative_effect", "biolink:acts_upstream_of_or_within_positive_effect", "biolink:acts_upstream_of_positive_effect", "biolink:applied_to_treat", "biolink:associated_with_increased_likelihood_of", "biolink:caused_by", "biolink:causes", "biolink:colocalizes_with", "biolink:contributes_to", "biolink:disease_has_location", "biolink:disrupts", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:genetically_associated_with", "biolink:has_adverse_event", "biolink:has_disease", "biolink:has_gene", "biolink:has_mode_of_inheritance", "biolink:has_participant", "biolink:has_phenotype", "biolink:has_sequence_variant", "biolink:homologous_to", "biolink:interacts_with", "biolink:is_active_in", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:model_of", "biolink:orthologous_to", "biolink:part_of", "biolink:participates_in", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:treats", "biolink:treats_or_applied_or_studied_to_treat"], "product_file_size": 6827814912, "product_url": "https://data.monarchinitiative.org/monarch-kg/latest/monarch-kg.duckdb"}, {"category": "GraphProduct", "description": "KGX JSON-Lines Distribution of KG-Monarch (Edges)", "edge_count": 14998050, "format": "kgx-jsonl", "id": "kg-monarch.graph.jsonl.edges", "name": "KGX JSON-L Distribution of KG-Monarch Edges", "node_categories": ["biolink:AnatomicalEntity", "biolink:BiologicalProcess", "biolink:Case", "biolink:Cell", "biolink:CellularComponent", "biolink:ChemicalEntity", "biolink:Disease", "biolink:Gene", "biolink:Genotype", "biolink:LifeStage", "biolink:MolecularActivity", "biolink:MolecularEntity", "biolink:NamedThing", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:SequenceVariant"], "node_count": 1460060, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "alliance"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "clingen"}, {"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "dictybase"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-monarch"}, {"relation_type": "prov:hadPrimarySource", "source": "maxo"}, {"relation_type": "prov:hadPrimarySource", "source": "panther"}, {"relation_type": "prov:hadPrimarySource", "source": "phenio"}, {"relation_type": "prov:hadPrimarySource", "source": "pombase"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "xenbase"}, {"relation_type": "prov:hadPrimarySource", "source": "zfin"}], "predicates": ["biolink:actively_involved_in", "biolink:acts_upstream_of", "biolink:acts_upstream_of_negative_effect", "biolink:acts_upstream_of_or_within", "biolink:acts_upstream_of_or_within_negative_effect", "biolink:acts_upstream_of_or_within_positive_effect", "biolink:acts_upstream_of_positive_effect", "biolink:applied_to_treat", "biolink:associated_with_increased_likelihood_of", "biolink:caused_by", "biolink:causes", "biolink:colocalizes_with", "biolink:contributes_to", "biolink:disease_has_location", "biolink:disrupts", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:genetically_associated_with", "biolink:has_adverse_event", "biolink:has_disease", "biolink:has_gene", "biolink:has_mode_of_inheritance", "biolink:has_participant", "biolink:has_phenotype", "biolink:has_sequence_variant", "biolink:homologous_to", "biolink:interacts_with", "biolink:is_active_in", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:model_of", "biolink:orthologous_to", "biolink:part_of", "biolink:participates_in", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:treats", "biolink:treats_or_applied_or_studied_to_treat"], "product_file_size": 15279494795, "product_url": "https://data.monarchinitiative.org/monarch-kg/latest/monarch-kg_edges.jsonl"}, {"category": "GraphProduct", "description": "KGX JSON-Lines Distribution of KG-Monarch (Nodes)", "edge_count": 14998050, "format": "kgx-jsonl", "id": "kg-monarch.graph.jsonl.nodes", "name": "KGX JSON-L Distribution of KG-Monarch Nodes", "node_categories": ["biolink:AnatomicalEntity", "biolink:BiologicalProcess", "biolink:Case", "biolink:Cell", "biolink:CellularComponent", "biolink:ChemicalEntity", "biolink:Disease", "biolink:Gene", "biolink:Genotype", "biolink:LifeStage", "biolink:MolecularActivity", "biolink:MolecularEntity", "biolink:NamedThing", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:SequenceVariant"], "node_count": 1460060, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "alliance"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "clingen"}, {"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "dictybase"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-monarch"}, {"relation_type": "prov:hadPrimarySource", "source": "maxo"}, {"relation_type": "prov:hadPrimarySource", "source": "panther"}, {"relation_type": "prov:hadPrimarySource", "source": "phenio"}, {"relation_type": "prov:hadPrimarySource", "source": "pombase"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "xenbase"}, {"relation_type": "prov:hadPrimarySource", "source": "zfin"}], "predicates": ["biolink:actively_involved_in", "biolink:acts_upstream_of", "biolink:acts_upstream_of_negative_effect", "biolink:acts_upstream_of_or_within", "biolink:acts_upstream_of_or_within_negative_effect", "biolink:acts_upstream_of_or_within_positive_effect", "biolink:acts_upstream_of_positive_effect", "biolink:applied_to_treat", "biolink:associated_with_increased_likelihood_of", "biolink:caused_by", "biolink:causes", "biolink:colocalizes_with", "biolink:contributes_to", "biolink:disease_has_location", "biolink:disrupts", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:genetically_associated_with", "biolink:has_adverse_event", "biolink:has_disease", "biolink:has_gene", "biolink:has_mode_of_inheritance", "biolink:has_participant", "biolink:has_phenotype", "biolink:has_sequence_variant", "biolink:homologous_to", "biolink:interacts_with", "biolink:is_active_in", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:model_of", "biolink:orthologous_to", "biolink:part_of", "biolink:participates_in", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:treats", "biolink:treats_or_applied_or_studied_to_treat"], "product_file_size": 1149505896, "product_url": "https://data.monarchinitiative.org/monarch-kg/latest/monarch-kg_nodes.jsonl"}, {"category": "GraphProduct", "description": "Neo4j Dump of KG-Monarch Edges", "edge_count": 14998050, "format": "neo4j", "id": "kg-monarch.graph.neo4j.edges", "name": "Neo4j Dump of KG-Monarch Edges", "node_categories": ["biolink:AnatomicalEntity", "biolink:BiologicalProcess", "biolink:Case", "biolink:Cell", "biolink:CellularComponent", "biolink:ChemicalEntity", "biolink:Disease", "biolink:Gene", "biolink:Genotype", "biolink:LifeStage", "biolink:MolecularActivity", "biolink:MolecularEntity", "biolink:NamedThing", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:SequenceVariant"], "node_count": 1460060, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "alliance"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "clingen"}, {"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "dictybase"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-monarch"}, {"relation_type": "prov:hadPrimarySource", "source": "maxo"}, {"relation_type": "prov:hadPrimarySource", "source": "panther"}, {"relation_type": "prov:hadPrimarySource", "source": "phenio"}, {"relation_type": "prov:hadPrimarySource", "source": "pombase"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "xenbase"}, {"relation_type": "prov:hadPrimarySource", "source": "zfin"}], "predicates": ["biolink:actively_involved_in", "biolink:acts_upstream_of", "biolink:acts_upstream_of_negative_effect", "biolink:acts_upstream_of_or_within", "biolink:acts_upstream_of_or_within_negative_effect", "biolink:acts_upstream_of_or_within_positive_effect", "biolink:acts_upstream_of_positive_effect", "biolink:applied_to_treat", "biolink:associated_with_increased_likelihood_of", "biolink:caused_by", "biolink:causes", "biolink:colocalizes_with", "biolink:contributes_to", "biolink:disease_has_location", "biolink:disrupts", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:genetically_associated_with", "biolink:has_adverse_event", "biolink:has_disease", "biolink:has_gene", "biolink:has_mode_of_inheritance", "biolink:has_participant", "biolink:has_phenotype", "biolink:has_sequence_variant", "biolink:homologous_to", "biolink:interacts_with", "biolink:is_active_in", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:model_of", "biolink:orthologous_to", "biolink:part_of", "biolink:participates_in", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:treats", "biolink:treats_or_applied_or_studied_to_treat"], "product_file_size": 4386388748, "product_url": "https://data.monarchinitiative.org/monarch-kg/latest/monarch-kg_edges.neo4j.csv"}, {"category": "GraphProduct", "description": "Neo4j Dump of KG-Monarch Nodes", "edge_count": 14998050, "format": "neo4j", "id": "kg-monarch.graph.neo4j.nodes", "name": "Neo4j Dump of KG-Monarch Nodes", "node_categories": ["biolink:AnatomicalEntity", "biolink:BiologicalProcess", "biolink:Case", "biolink:Cell", "biolink:CellularComponent", "biolink:ChemicalEntity", "biolink:Disease", "biolink:Gene", "biolink:Genotype", "biolink:LifeStage", "biolink:MolecularActivity", "biolink:MolecularEntity", "biolink:NamedThing", "biolink:OrganismTaxon", "biolink:Pathway", "biolink:PhenotypicFeature", "biolink:Protein", "biolink:SequenceVariant"], "node_count": 1460060, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "alliance"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "clingen"}, {"relation_type": "prov:hadPrimarySource", "source": "clinvar"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "dictybase"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "kg-monarch"}, {"relation_type": "prov:hadPrimarySource", "source": "maxo"}, {"relation_type": "prov:hadPrimarySource", "source": "panther"}, {"relation_type": "prov:hadPrimarySource", "source": "phenio"}, {"relation_type": "prov:hadPrimarySource", "source": "pombase"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "xenbase"}, {"relation_type": "prov:hadPrimarySource", "source": "zfin"}], "predicates": ["biolink:actively_involved_in", "biolink:acts_upstream_of", "biolink:acts_upstream_of_negative_effect", "biolink:acts_upstream_of_or_within", "biolink:acts_upstream_of_or_within_negative_effect", "biolink:acts_upstream_of_or_within_positive_effect", "biolink:acts_upstream_of_positive_effect", "biolink:applied_to_treat", "biolink:associated_with_increased_likelihood_of", "biolink:caused_by", "biolink:causes", "biolink:colocalizes_with", "biolink:contributes_to", "biolink:disease_has_location", "biolink:disrupts", "biolink:enables", "biolink:expressed_in", "biolink:gene_associated_with_condition", "biolink:genetically_associated_with", "biolink:has_adverse_event", "biolink:has_disease", "biolink:has_gene", "biolink:has_mode_of_inheritance", "biolink:has_participant", "biolink:has_phenotype", "biolink:has_sequence_variant", "biolink:homologous_to", "biolink:interacts_with", "biolink:is_active_in", "biolink:is_sequence_variant_of", "biolink:located_in", "biolink:model_of", "biolink:orthologous_to", "biolink:part_of", "biolink:participates_in", "biolink:related_to", "biolink:same_as", "biolink:subclass_of", "biolink:treats", "biolink:treats_or_applied_or_studied_to_treat"], "product_file_size": 349573789, "product_url": "https://data.monarchinitiative.org/monarch-kg/latest/monarch-kg_nodes.neo4j.csv"}, {"category": "Product", "description": "Gene expression data aggregated from GTEx, BioGPS, Bgee and other expression databases", "format": "http", "id": "genecards.expression.data", "name": "GeneCards Expression Data", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "biogps"}, {"relation_type": "prov:hadPrimarySource", "source": "genecards"}, {"relation_type": "prov:hadPrimarySource", "source": "gtex"}], "product_url": "https://www.genecards.org/", "warnings": ["File was not able to be retrieved when checked on 2026-06-05: HTTP 403 error when accessing file", "File was not able to be retrieved when checked on 2026-03-30_ HTTP 403 error when accessing file"]}, {"category": "GraphProduct", "description": "The integrative Biomedical Knowledge Hub (iBKH) knowledge graph, harmonizing and integrating information from diverse biomedical resources including DRKG, iDISK, and multiple databases (BRENDA, CTD, DrugBank, KEGG, PharmGKB, Reactome, SIDER, and others).", "id": "ibkh.graph", "name": "iBKH Knowledge Graph", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "brenda"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "drkg"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "ibkh"}, {"relation_type": "prov:hadPrimarySource", "source": "idisk"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "pharmgkb"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}]}, {"category": "GraphProduct", "compatibility": [{"standard": "biolink", "version": "4.3.6"}], "description": "KGX JSONL graph package for Bgee - Gene Expression Database distributed via the NCATS Translator release site (release 2026_03_06; build bgee_15.2_a4fc19df_2025sep1_4.3.6; source version 15.2; Biolink 4.3.6; Node Normalizer 2025sep1).", "edge_count": 4654943, "format": "kgx-jsonl", "id": "translator.bgee.graph", "latest_version": "2026_03_06", "license": {"id": "https://opensource.org/license/mit/", "label": "MIT"}, "name": "Translator Bgee KGX Graph", "node_count": 74689, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "translator"}], "product_url": "https://kgx-storage.rtx.ai/releases/bgee/latest/", "versions": ["2026_03_06", "bgee_15.2_a4fc19df_2025sep1_4.3.6"]}, {"category": "GraphProduct", "compatibility": [{"standard": "biolink", "version": "4.3.6"}], "description": "Aggregated KGX JSONL graph package combining 29 Translator release sources (release 2026_03_27; build 423af7989cac; Biolink 4.3.6; Node Normalizer 2025sep1).", "edge_count": 29243943, "format": "kgx-jsonl", "id": "translator.translator_kg.graph", "latest_version": "2026_03_27", "license": {"id": "https://opensource.org/license/mit/", "label": "MIT"}, "name": "Translator Aggregate KGX Graph", "node_count": 1696790, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "alliance"}, {"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "bindingdb"}, {"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "cohd"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "ctkp"}, {"relation_type": "prov:hadPrimarySource", "source": "dgidb"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "drug-approvals-kp"}, {"relation_type": "prov:hadPrimarySource", "source": "drugcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "drugrephub"}, {"relation_type": "prov:hadPrimarySource", "source": "gene2phenotype"}, {"relation_type": "prov:hadPrimarySource", "source": "geneticskp"}, {"relation_type": "prov:hadPrimarySource", "source": "go-cam"}, {"relation_type": "prov:hadPrimarySource", "source": "goa"}, {"relation_type": "prov:hadPrimarySource", "source": "gtopdb"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "icees-kg"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "panther"}, {"relation_type": "prov:hadPrimarySource", "source": "pathbank"}, {"relation_type": "prov:hadPrimarySource", "source": "semmeddb"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "signor"}, {"relation_type": "prov:hadPrimarySource", "source": "text-mining-kp"}, {"relation_type": "prov:hadPrimarySource", "source": "translator"}, {"relation_type": "prov:hadPrimarySource", "source": "ttd"}, {"relation_type": "prov:hadPrimarySource", "source": "ubergraph"}], "product_url": "https://kgx-storage.rtx.ai/releases/translator_kg/latest/", "versions": ["2026_03_27", "423af7989cac"]}], "publications": [{"authors": ["Bastian FB", "Brandulas Cammarata A", "Carsanaro S", "Detering H", "Huang W-T", "Joye S", "Niknejad A", "Nyamari M", "Mendes de Farias T", "Moretti S", "Tzivanopoulou M", "Wollbrett J", "Robinson-Rechavi M"], "doi": "doi:10.1093/nar/gkae1118", "id": "doi:10.1093/nar/gkae1118", "preferred": true, "title": "Bgee in 2024 - focus on curated single-cell RNA-seq datasets, and query tools", "year": "2025"}, {"authors": ["Bastian FB", "Roux J", "Niknejad A", "Comte A", "Fonseca Costa SS", "de Farias TM", "Moretti S", "Parmentier G", "de Laval VR", "Rosikiewicz M", "Wollbrett J", "Echchiki A", "Escoriza A", "Gharib WH", "Gonzales-Porta M", "Jarosz Y", "Laurenczy B", "Moret P", "Person E", "Roelli P", "Sanjeev K", "Seppey M", "Robinson-Rechavi M"], "doi": "doi:10.1093/nar/gkaa793", "id": "doi:10.1093/nar/gkaa793", "title": "The Bgee suite - integrated curated expression atlas and comparative transcriptomics in animals", "year": "2021"}], "repository": "https://github.com/BgeeDB/bgee_apps", "taxon": ["NCBITaxon:9606", "NCBITaxon:10090", "NCBITaxon:10116", "NCBITaxon:9615", "NCBITaxon:9685", "NCBITaxon:9796", "NCBITaxon:9823", "NCBITaxon:9913", "NCBITaxon:9925", "NCBITaxon:9940", "NCBITaxon:9986", "NCBITaxon:10141", "NCBITaxon:9031", "NCBITaxon:9103", "NCBITaxon:9258", "NCBITaxon:9483", "NCBITaxon:9531", "NCBITaxon:9541", "NCBITaxon:7227", "NCBITaxon:7955", "NCBITaxon:6239", "NCBITaxon:8355", "NCBITaxon:8364", "NCBITaxon:4932", "NCBITaxon:3702"]}