GOLD Environmental Paths
Translation of JGI GOLD (Genomes OnLine Database) ecosystem classification paths to OWL, plus mappings to MIxS and environment ontologies like ENVO.
[{"category": "Individual", "contact_details": [{"contact_type": "email", "value": "cjmungall@lbl.gov"}, {"contact_type": "github", "value": "cmungall"}], "label": "Chris Mungall", "orcid": "0000-0002-6601-2165"}]
[{"category": "DataModelProduct", "format": "owl", "id": "goldterms.data.owl", "name": "Main GOLDTERMS OWL release", "original_source": ["goldterms"], "product_url": "https://w3id.org/goldterms/goldterms.owl", "secondary_source": ["goldterms"], "warnings": ["File was not able to be retrieved when checked on 2026-04-07: HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2026-03-30_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2026-04-10: HTTP 404 error when accessing file"]}, {"category": "GraphicalInterface", "format": "owl", "id": "goldterms.bioportal", "name": "GOLDTERMS on BioPortal", "original_source": ["goldterms"], "product_url": "https://bioportal.bioontology.org/ontologies/GOLDTERMS", "secondary_source": ["goldterms"]}, {"category": "DataModelProduct", "format": "yaml", "id": "goldterms.definitions.yaml", "name": "GOLD definitions in YAML format", "original_source": ["goldterms"], "product_file_size": 27808, "product_url": "https://github.com/cmungall/gold-ontology/blob/main/gold_definitions.yaml", "secondary_source": ["goldterms"]}, {"category": "Product", "description": "Trait data table listing all 140+ harmonized traits available in metaTraits, mapped to standardized ontologies.", "id": "metatraits.traits", "name": "metaTraits Trait List", "original_source": ["bacdive", "bv-brc", "goldterms", "progenomes"], "product_url": "https://metatraits.embl.de/traits"}]
{"activity_status": "active", "category": "DataModel", "collection": ["translator", "ber"], "contacts": [{"category": "Individual", "contact_details": [{"contact_type": "email", "value": "cjmungall@lbl.gov"}, {"contact_type": "github", "value": "cmungall"}], "label": "Chris Mungall", "orcid": "0000-0002-6601-2165"}], "creation_date": "2025-03-09T00:00:00Z", "description": "Translation of JGI GOLD (Genomes OnLine Database) ecosystem classification paths to OWL, plus mappings to MIxS and environment ontologies like ENVO.", "domains": ["environment", "microbiology", "genomics", "biological systems"], "homepage_url": "https://gold.jgi.doe.gov/", "id": "goldterms", "last_modified_date": "2026-02-20T00:00:00Z", "layout": "resource_detail", "license": {"id": "https://github.com/cmungall/gold-ontology/blob/main/LICENSE", "label": "BSD 3-Clause License"}, "name": "GOLD Environmental Paths", "products": [{"category": "DataModelProduct", "format": "owl", "id": "goldterms.data.owl", "name": "Main GOLDTERMS OWL release", "original_source": ["goldterms"], "product_url": "https://w3id.org/goldterms/goldterms.owl", "secondary_source": ["goldterms"], "warnings": ["File was not able to be retrieved when checked on 2026-04-07: HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2026-03-30_ HTTP 404 error when accessing file", "File was not able to be retrieved when checked on 2025-09-11_ Timeout connecting to URL", "File was not able to be retrieved when checked on 2026-04-10: HTTP 404 error when accessing file"]}, {"category": "GraphicalInterface", "format": "owl", "id": "goldterms.bioportal", "name": "GOLDTERMS on BioPortal", "original_source": ["goldterms"], "product_url": "https://bioportal.bioontology.org/ontologies/GOLDTERMS", "secondary_source": ["goldterms"]}, {"category": "DataModelProduct", "format": "yaml", "id": "goldterms.definitions.yaml", "name": "GOLD definitions in YAML format", "original_source": ["goldterms"], "product_file_size": 27808, "product_url": "https://github.com/cmungall/gold-ontology/blob/main/gold_definitions.yaml", "secondary_source": ["goldterms"]}, {"category": "Product", "description": "Trait data table listing all 140+ harmonized traits available in metaTraits, mapped to standardized ontologies.", "id": "metatraits.traits", "name": "metaTraits Trait List", "original_source": ["bacdive", "bv-brc", "goldterms", "progenomes"], "product_url": "https://metatraits.embl.de/traits"}], "repository": "https://github.com/cmungall/gold-ontology", "tags": ["biopragmatics", "core"]}