VDJServer
VDJServer is a NIAID-supported, cloud-based analysis portal and public data repository for adaptive immune receptor repertoire (AIRR) sequencing data. It provides tools for processing B-cell and T-cell receptor repertoire sequences and hosts an AIRR Data Commons-compliant repository for sharing immune repertoire datasets. VDJServer is one of the NIAID-sponsored repositories whose dataset metadata is harvested and indexed by the NIAID Data Ecosystem Discovery Portal.
[{"category": "Organization", "contact_details": [{"contact_type": "url", "value": "https://vdjserver.org/"}], "label": "VDJServer"}]
[{"category": "DataSource", "description": "Cloud-based analysis portal and AIRR-compliant repository for searching, browsing, and downloading immune repertoire sequencing datasets.", "format": "http", "id": "vdjserver.portal", "name": "VDJServer Portal", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "vdjserver"}], "product_url": "https://vdjserver.org/"}, {"category": "GraphProduct", "description": "RDF (Turtle) knowledge graph of the NIAID Data Ecosystem, harmonizing dataset and computational-tool metadata harvested from NIAID-funded and globally-relevant infectious and immune-mediated disease repositories. Served through the Proto-OKN FRINK federated SPARQL platform.", "format": "ttl", "id": "nde.graph", "name": "NIAID Data Ecosystem KG (graph)", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "nde"}, {"relation_type": "prov:hadPrimarySource", "source": "immport"}, {"relation_type": "prov:hadPrimarySource", "source": "vdjserver"}], "product_url": "https://frink.apps.renci.org/nde", "secondary_source": [{"relation_type": "prov:wasInfluencedBy", "source": "gene-expression-omnibus"}, {"relation_type": "prov:wasInfluencedBy", "source": "sra"}, {"relation_type": "prov:wasInfluencedBy", "source": "omicsdi"}, {"relation_type": "prov:wasInfluencedBy", "source": "hubmap"}, {"relation_type": "prov:wasInfluencedBy", "source": "massive"}, {"relation_type": "prov:wasInfluencedBy", "source": "pdb"}, {"relation_type": "prov:wasInfluencedBy", "source": "lincs"}]}]
{"activity_status": "active", "category": "DataSource", "contacts": [{"category": "Organization", "contact_details": [{"contact_type": "url", "value": "https://vdjserver.org/"}], "label": "VDJServer"}], "creation_date": "2026-07-02T00:00:00Z", "description": "VDJServer is a NIAID-supported, cloud-based analysis portal and public data repository for adaptive immune receptor repertoire (AIRR) sequencing data. It provides tools for processing B-cell and T-cell receptor repertoire sequences and hosts an AIRR Data Commons-compliant repository for sharing immune repertoire datasets. VDJServer is one of the NIAID-sponsored repositories whose dataset metadata is harvested and indexed by the NIAID Data Ecosystem Discovery Portal.", "domains": ["biomedical", "immunology", "genomics"], "homepage_url": "https://vdjserver.org/", "id": "vdjserver", "last_modified_date": "2026-07-02T00:00:00Z", "layout": "resource_detail", "name": "VDJServer", "products": [{"category": "DataSource", "description": "Cloud-based analysis portal and AIRR-compliant repository for searching, browsing, and downloading immune repertoire sequencing datasets.", "format": "http", "id": "vdjserver.portal", "name": "VDJServer Portal", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "vdjserver"}], "product_url": "https://vdjserver.org/"}, {"category": "GraphProduct", "description": "RDF (Turtle) knowledge graph of the NIAID Data Ecosystem, harmonizing dataset and computational-tool metadata harvested from NIAID-funded and globally-relevant infectious and immune-mediated disease repositories. Served through the Proto-OKN FRINK federated SPARQL platform.", "format": "ttl", "id": "nde.graph", "name": "NIAID Data Ecosystem KG (graph)", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "nde"}, {"relation_type": "prov:hadPrimarySource", "source": "immport"}, {"relation_type": "prov:hadPrimarySource", "source": "vdjserver"}], "product_url": "https://frink.apps.renci.org/nde", "secondary_source": [{"relation_type": "prov:wasInfluencedBy", "source": "gene-expression-omnibus"}, {"relation_type": "prov:wasInfluencedBy", "source": "sra"}, {"relation_type": "prov:wasInfluencedBy", "source": "omicsdi"}, {"relation_type": "prov:wasInfluencedBy", "source": "hubmap"}, {"relation_type": "prov:wasInfluencedBy", "source": "massive"}, {"relation_type": "prov:wasInfluencedBy", "source": "pdb"}, {"relation_type": "prov:wasInfluencedBy", "source": "lincs"}]}], "taxon": ["NCBITaxon:9606"]}