InterPro
InterPro is a database of protein families, domains and functional sites in which identifiable features found in known proteins can be applied to unknown protein sequences.
[{"category": "Organization", "contact_details": [{"contact_type": "email", "value": "interpro-help@ebi.ac.uk"}, {"contact_type": "url", "value": "https://www.ebi.ac.uk/interpro/contact/"}], "id": "ebi", "label": "InterPro"}]
[{"category": "GraphicalInterface", "description": "Web interface for browsing and searching the InterPro database", "format": "http", "id": "interpro.web", "name": "InterPro Web Interface", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "interpro"}], "product_url": "https://www.ebi.ac.uk/interpro/"}, {"category": "ProgrammingInterface", "connection_url": "https://www.ebi.ac.uk/interpro/api/", "description": "RESTful API for programmatic access to InterPro data", "id": "interpro.api", "is_public": true, "name": "InterPro API", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "interpro"}], "product_url": "https://www.ebi.ac.uk/interpro/api/"}, {"category": "ProcessProduct", "compression": "targz", "description": "Software package for scanning protein sequences against InterPro's signatures", "format": "java", "id": "interpro.interproscan", "name": "InterProScan", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "interpro"}], "product_file_size": 7153864107, "product_url": "http://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/5.74-105.0/interproscan-5.74-105.0-64-bit.tar.gz"}, {"category": "DataModelProduct", "description": "Complete list of InterPro entries with their types and short names", "format": "tsv", "id": "interpro.entry_list", "name": "InterPro Entry List", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "interpro"}], "product_file_size": 2670480, "product_url": "https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/entry.list"}, {"category": "DataModelProduct", "compression": "gzip", "description": "Complete InterPro database in XML format containing entries, member database signatures, GO terms, and relationships", "format": "xml", "id": "interpro.xml", "name": "InterPro XML", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "interpro"}], "product_file_size": 40445027, "product_url": "https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/interpro.xml.gz"}, {"category": "MappingProduct", "compression": "gzip", "description": "Complete set of matches between protein sequences and InterPro entries/signatures", "format": "xml", "id": "interpro.match_complete", "name": "InterPro Match Complete", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "interpro"}], "product_file_size": 89253159090, "product_url": "https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/match_complete.xml.gz"}, {"category": "MappingProduct", "compression": "targz", "description": "InterPro matches for UniParc protein sequences", "format": "xml", "id": "interpro.uniparc_match", "name": "UniParc Match", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "interpro"}], "product_file_size": 331243597405, "product_url": "https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/uniparc_match.tar.gz"}, {"category": "MappingProduct", "compression": "gzip", "description": "Mappings of protein sequences to InterPro entries in a tab-delimited format", "format": "tsv", "id": "interpro.protein2ipr", "name": "Protein to InterPro Mappings", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "interpro"}], "product_file_size": 20975973462, "product_url": "https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/protein2ipr.dat.gz"}, {"category": "DataModelProduct", "description": "Hierarchical relationships between InterPro entries", "format": "tsv", "id": "interpro.parent_child_tree", "name": "Parent-Child Tree", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "interpro"}], "product_file_size": 627613, "product_url": "https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/ParentChildTreeFile.txt"}, {"category": "MappingProduct", "description": "Mappings between InterPro entries and Gene Ontology (GO) terms", "format": "tsv", "id": "interpro.interpro2go", "name": "InterPro to GO Mappings", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}], "product_file_size": 3088718, "product_url": "https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/interpro2go"}, {"category": "GraphProduct", "description": "The SPOKE knowledge graph containing nodes and edges from multiple biomedical data sources.", "format": "http", "id": "spoke.graph", "name": "SPOKE Graph", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "bindingdb"}, {"relation_type": "prov:hadPrimarySource", "source": "bv-brc"}, {"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "civic"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "clinicaltrialsgov"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "drugcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "foodb"}, {"relation_type": "prov:hadPrimarySource", "source": "gdsc"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "lincs-l1000"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "metacyc"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}, {"relation_type": "prov:hadPrimarySource", "source": "pathophenodb"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "pid"}, {"relation_type": "prov:hadPrimarySource", "source": "protcid"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmed"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "spoke"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}], "product_url": "https://spoke.ucsf.edu/data-tools"}, {"category": "Product", "description": "Network embeddings of the Bioteque graph that represent biological entities and their associations", "id": "bioteque.embeddings", "name": "Bioteque Embeddings", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "achilles"}, {"relation_type": "prov:hadPrimarySource", "source": "bioteque"}, {"relation_type": "prov:hadPrimarySource", "source": "bto"}, {"relation_type": "prov:hadPrimarySource", "source": "ccle"}, {"relation_type": "prov:hadPrimarySource", "source": "cellosaurus"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "chemicalchecker"}, {"relation_type": "prov:hadPrimarySource", "source": "clue"}, {"relation_type": "prov:hadPrimarySource", "source": "compartments"}, {"relation_type": "prov:hadPrimarySource", "source": "corum"}, {"relation_type": "prov:hadPrimarySource", "source": "cosmic"}, {"relation_type": "prov:hadPrimarySource", "source": "creeds"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "depmap"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "dorothea"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "drugcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "gdsc"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gtex"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "huri"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "lincs"}, {"relation_type": "prov:hadPrimarySource", "source": "offsides"}, {"relation_type": "prov:hadPrimarySource", "source": "omnipath"}, {"relation_type": "prov:hadPrimarySource", "source": "opentargets"}, {"relation_type": "prov:hadPrimarySource", "source": "pharmacodb"}, {"relation_type": "prov:hadPrimarySource", "source": "prism"}, {"relation_type": "prov:hadPrimarySource", "source": "progeny"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "repodb"}, {"relation_type": "prov:hadPrimarySource", "source": "repohub"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}], "product_url": "https://bioteque.irbbarcelona.org/downloads/embeddings"}, {"description": "The MechRepoNet knowledge graph in its original format", "id": "mechreponet.kg", "name": "MechRepoNet Knowledge Graph", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "biolink"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "complexportal"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hetionet"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "mechreponet"}, {"relation_type": "prov:hadPrimarySource", "source": "mirtarbase"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "pr"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "rnacentral"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "unii"}], "product_url": "https://github.com/SuLab/MechRepoNet/releases/tag/publication"}, {"category": "GraphProduct", "compatibility": [{"standard": "biolink"}], "compression": "zip", "description": "Curated mechanistic drug\u2013disease paths comprising the DrugMechDB dataset packaged as a downloadable archive.", "dump_format": "other", "format": "mixed", "id": "drugmechdb.graph", "latest_version": "2.0.1", "name": "DrugMechDB Graph Dataset", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "drugmechdb"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "pr"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}], "product_url": "https://doi.org/10.5281/zenodo.8139357", "repository": "https://github.com/SuLab/DrugMechDB", "versions": ["2.0.1", "2.0.0", "1.0.2", "1.0"]}, {"category": "Product", "description": "interpro OBO", "format": "obo", "id": "obo-db-ingest.interpro.obo", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "interpro OBO", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "obo-db-ingest"}], "product_file_size": 1166198, "product_url": "https://w3id.org/biopragmatics/resources/interpro/interpro.obo"}, {"category": "Product", "description": "interpro OWL", "format": "owl", "id": "obo-db-ingest.interpro.owl", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "interpro OWL", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "obo-db-ingest"}], "product_file_size": 1347709, "product_url": "https://w3id.org/biopragmatics/resources/interpro/interpro.owl"}, {"category": "Product", "description": "interpro OBO Graph JSON", "format": "json", "id": "obo-db-ingest.interpro.json", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "interpro OBO Graph JSON", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "obo-db-ingest"}], "product_file_size": 1116474, "product_url": "https://w3id.org/biopragmatics/resources/interpro/interpro.json"}, {"category": "MappingProduct", "description": "Files containing transitive assignments of InterPro matches, UniProtKB keywords, subcellular locations, EC numbers, or HAMAP matches to manually-selected GO terms", "format": "txt", "id": "goa.mapping-files", "name": "GO Mapping Files", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "goa"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}], "product_url": "https://ftp.ebi.ac.uk/pub/databases/GO/goa/external2go/"}, {"category": "GraphicalInterface", "description": "Interactive Shiny web interface for exploring and visualizing human kinase-substrate interactions", "format": "http", "id": "kinace.portal", "name": "KiNet Web Portal", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "kinace"}], "product_url": "https://kinet.kinametrix.com/", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "coralkinome"}, {"relation_type": "prov:wasDerivedFrom", "source": "darkkinasekb"}, {"relation_type": "prov:wasDerivedFrom", "source": "epsd"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "interpro"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "kinhub"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}]}, {"category": "GraphProduct", "compression": "gzip", "description": "protein network data (full network, scored links between proteins)", "format": "txt", "id": "string.protein.links", "name": "STRING Protein Links", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "biocyc"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "cog"}, {"relation_type": "prov:hadPrimarySource", "source": "compartments"}, {"relation_type": "prov:hadPrimarySource", "source": "dip"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "eggnog"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "flybase"}, {"relation_type": "prov:hadPrimarySource", "source": "geo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hprd"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "mint"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}, {"relation_type": "prov:hadPrimarySource", "source": "pdb"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "progenomes"}, {"relation_type": "prov:hadPrimarySource", "source": "proteomehd"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmedcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "sgd"}, {"relation_type": "prov:hadPrimarySource", "source": "simap"}, {"relation_type": "prov:hadPrimarySource", "source": "smart"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "swissmodel"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}, {"relation_type": "prov:hadPrimarySource", "source": "wormbase"}], "product_file_size": 138154280240, "product_url": "https://stringdb-downloads.org/download/protein.links.v12.0.txt.gz"}, {"category": "GraphProduct", "compression": "gzip", "description": "protein network data (full network, incl. subscores per channel)", "format": "txt", "id": "string.protein.links.detailed", "name": "STRING Protein Links Detailed", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "biocyc"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "cog"}, {"relation_type": "prov:hadPrimarySource", "source": "compartments"}, {"relation_type": "prov:hadPrimarySource", "source": "dip"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "eggnog"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "flybase"}, {"relation_type": "prov:hadPrimarySource", "source": "geo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hprd"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "mint"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}, {"relation_type": "prov:hadPrimarySource", "source": "pdb"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "progenomes"}, {"relation_type": "prov:hadPrimarySource", "source": "proteomehd"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmedcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "sgd"}, {"relation_type": "prov:hadPrimarySource", "source": "simap"}, {"relation_type": "prov:hadPrimarySource", "source": "smart"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "swissmodel"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}, {"relation_type": "prov:hadPrimarySource", "source": "wormbase"}], "product_file_size": 203534412387, "product_url": "https://stringdb-downloads.org/download/protein.links.detailed.v12.0.txt.gz"}, {"category": "GraphProduct", "compression": "gzip", "description": "protein network data (full network, incl. distinction: direct vs. interologs)", "format": "txt", "id": "string.protein.links.full", "name": "STRING Protein Links Full", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "biocyc"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "cog"}, {"relation_type": "prov:hadPrimarySource", "source": "compartments"}, {"relation_type": "prov:hadPrimarySource", "source": "dip"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "eggnog"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "flybase"}, {"relation_type": "prov:hadPrimarySource", "source": "geo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hprd"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "mint"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}, {"relation_type": "prov:hadPrimarySource", "source": "pdb"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "progenomes"}, {"relation_type": "prov:hadPrimarySource", "source": "proteomehd"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmedcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "sgd"}, {"relation_type": "prov:hadPrimarySource", "source": "simap"}, {"relation_type": "prov:hadPrimarySource", "source": "smart"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "swissmodel"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}, {"relation_type": "prov:hadPrimarySource", "source": "wormbase"}], "product_file_size": 214269334954, "product_url": "https://stringdb-downloads.org/download/protein.links.full.v12.0.txt.gz"}, {"category": "GraphProduct", "compression": "gzip", "description": "protein network data (physical subnetwork, scored links between proteins)", "format": "txt", "id": "string.protein.physical.links", "name": "STRING Protein Physical Links", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "biocyc"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "cog"}, {"relation_type": "prov:hadPrimarySource", "source": "compartments"}, {"relation_type": "prov:hadPrimarySource", "source": "dip"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "eggnog"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "flybase"}, {"relation_type": "prov:hadPrimarySource", "source": "geo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hprd"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "mint"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}, {"relation_type": "prov:hadPrimarySource", "source": "pdb"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "progenomes"}, {"relation_type": "prov:hadPrimarySource", "source": "proteomehd"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmedcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "sgd"}, {"relation_type": "prov:hadPrimarySource", "source": "simap"}, {"relation_type": "prov:hadPrimarySource", "source": "smart"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "swissmodel"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}, {"relation_type": "prov:hadPrimarySource", "source": "wormbase"}], "product_file_size": 11867396121, "product_url": "https://stringdb-downloads.org/download/protein.physical.links.v12.0.txt.gz"}, {"category": "GraphProduct", "compression": "gzip", "description": "protein network data (physical subnetwork, incl. subscores per channel)", "format": "txt", "id": "string.protein.physical.links.detailed", "name": "STRING Protein Physical Links Detailed", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "biocyc"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "cog"}, {"relation_type": "prov:hadPrimarySource", "source": "compartments"}, {"relation_type": "prov:hadPrimarySource", "source": "dip"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "eggnog"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "flybase"}, {"relation_type": "prov:hadPrimarySource", "source": "geo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hprd"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "mint"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}, {"relation_type": "prov:hadPrimarySource", "source": "pdb"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "progenomes"}, {"relation_type": "prov:hadPrimarySource", "source": "proteomehd"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmedcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "sgd"}, {"relation_type": "prov:hadPrimarySource", "source": "simap"}, {"relation_type": "prov:hadPrimarySource", "source": "smart"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "swissmodel"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}, {"relation_type": "prov:hadPrimarySource", "source": "wormbase"}], "product_file_size": 14859366689, "product_url": "https://stringdb-downloads.org/download/protein.physical.links.detailed.v12.0.txt.gz"}, {"category": "GraphProduct", "compression": "gzip", "description": "protein network data (physical subnetwork, incl. distinction: direct vs. interologs)", "format": "txt", "id": "string.protein.physical.links.full", "name": "STRING Protein Physical Links Full", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "biocyc"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "cog"}, {"relation_type": "prov:hadPrimarySource", "source": "compartments"}, {"relation_type": "prov:hadPrimarySource", "source": "dip"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "eggnog"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "flybase"}, {"relation_type": "prov:hadPrimarySource", "source": "geo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hprd"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "mint"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}, {"relation_type": "prov:hadPrimarySource", "source": "pdb"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "progenomes"}, {"relation_type": "prov:hadPrimarySource", "source": "proteomehd"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmedcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "sgd"}, {"relation_type": "prov:hadPrimarySource", "source": "simap"}, {"relation_type": "prov:hadPrimarySource", "source": "smart"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "swissmodel"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}, {"relation_type": "prov:hadPrimarySource", "source": "wormbase"}], "product_file_size": 15528028374, "product_url": "https://stringdb-downloads.org/download/protein.physical.links.full.v12.0.txt.gz"}, {"category": "GraphProduct", "compression": "gzip", "description": "association scores between orthologous groups", "format": "txt", "id": "string.cog.links", "name": "STRING COG Links", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "biocyc"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "cog"}, {"relation_type": "prov:hadPrimarySource", "source": "compartments"}, {"relation_type": "prov:hadPrimarySource", "source": "dip"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "eggnog"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "flybase"}, {"relation_type": "prov:hadPrimarySource", "source": "geo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hprd"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "mint"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}, {"relation_type": "prov:hadPrimarySource", "source": "pdb"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "progenomes"}, {"relation_type": "prov:hadPrimarySource", "source": "proteomehd"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmedcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "sgd"}, {"relation_type": "prov:hadPrimarySource", "source": "simap"}, {"relation_type": "prov:hadPrimarySource", "source": "smart"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "swissmodel"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}, {"relation_type": "prov:hadPrimarySource", "source": "wormbase"}], "product_file_size": 185338269, "product_url": "https://stringdb-downloads.org/download/COG.links.v12.0.txt.gz"}, {"category": "GraphProduct", "compression": "gzip", "description": "association scores (incl. subscores per channel)", "format": "txt", "id": "string.cog.links.detailed", "name": "STRING COG Links Detailed", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "biocyc"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "cog"}, {"relation_type": "prov:hadPrimarySource", "source": "compartments"}, {"relation_type": "prov:hadPrimarySource", "source": "dip"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "eggnog"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "flybase"}, {"relation_type": "prov:hadPrimarySource", "source": "geo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hprd"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "mint"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}, {"relation_type": "prov:hadPrimarySource", "source": "pdb"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "progenomes"}, {"relation_type": "prov:hadPrimarySource", "source": "proteomehd"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmedcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "sgd"}, {"relation_type": "prov:hadPrimarySource", "source": "simap"}, {"relation_type": "prov:hadPrimarySource", "source": "smart"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "swissmodel"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}, {"relation_type": "prov:hadPrimarySource", "source": "wormbase"}], "product_file_size": 250279091, "product_url": "https://stringdb-downloads.org/download/COG.links.detailed.v12.0.txt.gz"}, {"category": "GraphProduct", "compression": "gzip", "description": "full database, part II: the networks (nodes, edges, scores,...)", "id": "string.database", "name": "STRING Database Network Schema", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "biocyc"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "cog"}, {"relation_type": "prov:hadPrimarySource", "source": "compartments"}, {"relation_type": "prov:hadPrimarySource", "source": "dip"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "eggnog"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "flybase"}, {"relation_type": "prov:hadPrimarySource", "source": "geo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hprd"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "mint"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}, {"relation_type": "prov:hadPrimarySource", "source": "pdb"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "progenomes"}, {"relation_type": "prov:hadPrimarySource", "source": "proteomehd"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmedcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "sgd"}, {"relation_type": "prov:hadPrimarySource", "source": "simap"}, {"relation_type": "prov:hadPrimarySource", "source": "smart"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "swissmodel"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}, {"relation_type": "prov:hadPrimarySource", "source": "wormbase"}], "product_file_size": 281505096430, "product_url": "https://stringdb-downloads.org/download/network_schema.v12.0.sql.gz"}, {"category": "Product", "description": "interpro Nodes TSV", "format": "tsv", "id": "obo-db-ingest.interpro.tsv", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "interpro Nodes TSV", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "obo-db-ingest"}], "product_file_size": 697846, "product_url": "https://w3id.org/biopragmatics/resources/interpro/interpro.tsv"}, {"category": "GraphProduct", "description": "InterPro domain is_a domain edges", "format": "csv", "id": "prokn.interpro.domain.is_a.domain.edges", "name": "ProKN InterPro Domain Hierarchy Edges", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "prokn"}], "product_file_size": 171040, "product_url": "https://research.bioinformatics.udel.edu/prokn_dp/downloads/current/InterPro.Domain.IS_A.Domain.edges.csv"}, {"category": "GraphProduct", "description": "InterPro protein has domain edges", "format": "csv", "id": "prokn.interpro.protein.has_domain.domain.edges", "name": "ProKN InterPro Domain Edges", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "prokn"}], "product_file_size": 4696849, "product_url": "https://research.bioinformatics.udel.edu/prokn_dp/downloads/current/InterPro.Protein.HAS_DOMAIN.Domain.edges.csv"}, {"category": "GraphProduct", "description": "Merged knowledge graph data files containing over 400,000 nodes and 5,000,000 edges integrating gene expression, molecular interactions, functions, pathways, homology-based annotations, and environmental exposures from Planteome, EMBL-EBI Expression Atlas, and other sources. Available as tab-separated value files in KGX format with nodes and edges following the Biolink model.", "id": "genophenoenvo-kg.data", "name": "GenoPhenoEnvo KG Data", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "genophenoenvo-kg"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "po"}, {"relation_type": "prov:hadPrimarySource", "source": "to"}, {"relation_type": "prov:hadPrimarySource", "source": "peco"}, {"relation_type": "prov:hadPrimarySource", "source": "tair"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}], "product_url": "https://datacommons.cyverse.org/browse/iplant/home/shared/genophenoenvo"}, {"category": "Product", "description": "Bulk download of DisProt data in multiple formats including JSON, TSV, FASTA, and GAF", "format": "json", "id": "disprot.downloads", "name": "DisProt Downloads", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "disprot"}], "product_url": "https://www.disprot.org/download", "secondary_source": [{"relation_type": "prov:wasInformedBy", "source": "uniprot"}, {"relation_type": "prov:wasInformedBy", "source": "interpro"}, {"relation_type": "prov:wasInformedBy", "source": "go"}, {"relation_type": "prov:wasInformedBy", "source": "eco"}]}, {"category": "Product", "description": "Harmonizome 3.0 processed dataset downloads, including dataset-specific association files and knowledge graph serialization downloads.", "format": "mixed", "id": "harmonizome.downloads", "name": "Harmonizome Downloads", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "harmonizome"}], "product_url": "https://maayanlab.cloud/Harmonizome/download", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "achilles"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogps"}, {"relation_type": "prov:wasDerivedFrom", "source": "ccle"}, {"relation_type": "prov:wasDerivedFrom", "source": "cellmarker"}, {"relation_type": "prov:wasDerivedFrom", "source": "chea"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "cmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "compartments"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "cosmic"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "depmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "encode"}, {"relation_type": "prov:wasDerivedFrom", "source": "gdsc"}, {"relation_type": "prov:wasDerivedFrom", "source": "geo"}, {"relation_type": "prov:wasDerivedFrom", "source": "glygen"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gtex"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "hpa"}, {"relation_type": "prov:wasDerivedFrom", "source": "hubmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "impc"}, {"relation_type": "prov:wasDerivedFrom", "source": "interpro"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "lincs-l1000"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "motrpac"}, {"relation_type": "prov:wasDerivedFrom", "source": "mp"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pfocr"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "tcga"}, {"relation_type": "prov:wasDerivedFrom", "source": "tissues"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "description": "Neo4j knowledge graph serialization of Harmonizome processed datasets, including genes, attributes, resources, datasets, and gene-attribute associations.", "dump_format": "neo4j", "format": "neo4j", "id": "harmonizome.kg-neo4j", "latest_version": "3.0", "name": "Harmonizome Knowledge Graph Neo4j Database", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "harmonizome"}], "product_url": "https://harmonizome-kg.maayanlab.cloud/", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "achilles"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogps"}, {"relation_type": "prov:wasDerivedFrom", "source": "ccle"}, {"relation_type": "prov:wasDerivedFrom", "source": "cellmarker"}, {"relation_type": "prov:wasDerivedFrom", "source": "chea"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "cmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "compartments"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "cosmic"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "depmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "encode"}, {"relation_type": "prov:wasDerivedFrom", "source": "gdsc"}, {"relation_type": "prov:wasDerivedFrom", "source": "geo"}, {"relation_type": "prov:wasDerivedFrom", "source": "glygen"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gtex"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "hpa"}, {"relation_type": "prov:wasDerivedFrom", "source": "hubmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "impc"}, {"relation_type": "prov:wasDerivedFrom", "source": "interpro"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "lincs-l1000"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "motrpac"}, {"relation_type": "prov:wasDerivedFrom", "source": "mp"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pfocr"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "tcga"}, {"relation_type": "prov:wasDerivedFrom", "source": "tissues"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}]
{"activity_status": "active", "category": "DataSource", "contacts": [{"category": "Organization", "contact_details": [{"contact_type": "email", "value": "interpro-help@ebi.ac.uk"}, {"contact_type": "url", "value": "https://www.ebi.ac.uk/interpro/contact/"}], "id": "ebi", "label": "InterPro"}], "creation_date": "2025-03-09T00:00:00Z", "description": "InterPro is a database of protein families, domains and functional sites in which identifiable features found in known proteins can be applied to unknown protein sequences.", "domains": ["biological systems", "proteomics", "genomics", "drug discovery"], "homepage_url": "https://www.ebi.ac.uk/interpro/", "id": "interpro", "infores_id": "interpro", "last_modified_date": "2026-02-18T00:00:00Z", "layout": "resource_detail", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0", "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png"}, "name": "InterPro", "products": [{"category": "GraphicalInterface", "description": "Web interface for browsing and searching the InterPro database", "format": "http", "id": "interpro.web", "name": "InterPro Web Interface", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "interpro"}], "product_url": "https://www.ebi.ac.uk/interpro/"}, {"category": "ProgrammingInterface", "connection_url": "https://www.ebi.ac.uk/interpro/api/", "description": "RESTful API for programmatic access to InterPro data", "id": "interpro.api", "is_public": true, "name": "InterPro API", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "interpro"}], "product_url": "https://www.ebi.ac.uk/interpro/api/"}, {"category": "ProcessProduct", "compression": "targz", "description": "Software package for scanning protein sequences against InterPro's signatures", "format": "java", "id": "interpro.interproscan", "name": "InterProScan", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "interpro"}], "product_file_size": 7153864107, "product_url": "http://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/5.74-105.0/interproscan-5.74-105.0-64-bit.tar.gz"}, {"category": "DataModelProduct", "description": "Complete list of InterPro entries with their types and short names", "format": "tsv", "id": "interpro.entry_list", "name": "InterPro Entry List", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "interpro"}], "product_file_size": 2670480, "product_url": "https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/entry.list"}, {"category": "DataModelProduct", "compression": "gzip", "description": "Complete InterPro database in XML format containing entries, member database signatures, GO terms, and relationships", "format": "xml", "id": "interpro.xml", "name": "InterPro XML", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "interpro"}], "product_file_size": 40445027, "product_url": "https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/interpro.xml.gz"}, {"category": "MappingProduct", "compression": "gzip", "description": "Complete set of matches between protein sequences and InterPro entries/signatures", "format": "xml", "id": "interpro.match_complete", "name": "InterPro Match Complete", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "interpro"}], "product_file_size": 89253159090, "product_url": "https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/match_complete.xml.gz"}, {"category": "MappingProduct", "compression": "targz", "description": "InterPro matches for UniParc protein sequences", "format": "xml", "id": "interpro.uniparc_match", "name": "UniParc Match", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "interpro"}], "product_file_size": 331243597405, "product_url": "https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/uniparc_match.tar.gz"}, {"category": "MappingProduct", "compression": "gzip", "description": "Mappings of protein sequences to InterPro entries in a tab-delimited format", "format": "tsv", "id": "interpro.protein2ipr", "name": "Protein to InterPro Mappings", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "interpro"}], "product_file_size": 20975973462, "product_url": "https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/protein2ipr.dat.gz"}, {"category": "DataModelProduct", "description": "Hierarchical relationships between InterPro entries", "format": "tsv", "id": "interpro.parent_child_tree", "name": "Parent-Child Tree", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "interpro"}], "product_file_size": 627613, "product_url": "https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/ParentChildTreeFile.txt"}, {"category": "MappingProduct", "description": "Mappings between InterPro entries and Gene Ontology (GO) terms", "format": "tsv", "id": "interpro.interpro2go", "name": "InterPro to GO Mappings", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}], "product_file_size": 3088718, "product_url": "https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/interpro2go"}, {"category": "GraphProduct", "description": "The SPOKE knowledge graph containing nodes and edges from multiple biomedical data sources.", "format": "http", "id": "spoke.graph", "name": "SPOKE Graph", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bgee"}, {"relation_type": "prov:hadPrimarySource", "source": "bindingdb"}, {"relation_type": "prov:hadPrimarySource", "source": "bv-brc"}, {"relation_type": "prov:hadPrimarySource", "source": "chembl"}, {"relation_type": "prov:hadPrimarySource", "source": "civic"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "clinicaltrialsgov"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "drugcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "foodb"}, {"relation_type": "prov:hadPrimarySource", "source": "gdsc"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gwascatalog"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "lincs-l1000"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "metacyc"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbigene"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}, {"relation_type": "prov:hadPrimarySource", "source": "pathophenodb"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "pid"}, {"relation_type": "prov:hadPrimarySource", "source": "protcid"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmed"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "spoke"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}], "product_url": "https://spoke.ucsf.edu/data-tools"}, {"category": "Product", "description": "Network embeddings of the Bioteque graph that represent biological entities and their associations", "id": "bioteque.embeddings", "name": "Bioteque Embeddings", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "achilles"}, {"relation_type": "prov:hadPrimarySource", "source": "bioteque"}, {"relation_type": "prov:hadPrimarySource", "source": "bto"}, {"relation_type": "prov:hadPrimarySource", "source": "ccle"}, {"relation_type": "prov:hadPrimarySource", "source": "cellosaurus"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "chemicalchecker"}, {"relation_type": "prov:hadPrimarySource", "source": "clue"}, {"relation_type": "prov:hadPrimarySource", "source": "compartments"}, {"relation_type": "prov:hadPrimarySource", "source": "corum"}, {"relation_type": "prov:hadPrimarySource", "source": "cosmic"}, {"relation_type": "prov:hadPrimarySource", "source": "creeds"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "depmap"}, {"relation_type": "prov:hadPrimarySource", "source": "disgenet"}, {"relation_type": "prov:hadPrimarySource", "source": "dorothea"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "drugcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "gdsc"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "gtex"}, {"relation_type": "prov:hadPrimarySource", "source": "hpa"}, {"relation_type": "prov:hadPrimarySource", "source": "huri"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "lincs"}, {"relation_type": "prov:hadPrimarySource", "source": "offsides"}, {"relation_type": "prov:hadPrimarySource", "source": "omnipath"}, {"relation_type": "prov:hadPrimarySource", "source": "opentargets"}, {"relation_type": "prov:hadPrimarySource", "source": "pharmacodb"}, {"relation_type": "prov:hadPrimarySource", "source": "prism"}, {"relation_type": "prov:hadPrimarySource", "source": "progeny"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "repodb"}, {"relation_type": "prov:hadPrimarySource", "source": "repohub"}, {"relation_type": "prov:hadPrimarySource", "source": "sider"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}], "product_url": "https://bioteque.irbbarcelona.org/downloads/embeddings"}, {"description": "The MechRepoNet knowledge graph in its original format", "id": "mechreponet.kg", "name": "MechRepoNet Knowledge Graph", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "biolink"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "complexportal"}, {"relation_type": "prov:hadPrimarySource", "source": "ctd"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hetionet"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "mechreponet"}, {"relation_type": "prov:hadPrimarySource", "source": "mirtarbase"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "pr"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "rnacentral"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "unii"}], "product_url": "https://github.com/SuLab/MechRepoNet/releases/tag/publication"}, {"category": "GraphProduct", "compatibility": [{"standard": "biolink"}], "compression": "zip", "description": "Curated mechanistic drug\u2013disease paths comprising the DrugMechDB dataset packaged as a downloadable archive.", "dump_format": "other", "format": "mixed", "id": "drugmechdb.graph", "latest_version": "2.0.1", "name": "DrugMechDB Graph Dataset", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "drugbank"}, {"relation_type": "prov:hadPrimarySource", "source": "drugmechdb"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "mesh"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "pr"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}], "product_url": "https://doi.org/10.5281/zenodo.8139357", "repository": "https://github.com/SuLab/DrugMechDB", "versions": ["2.0.1", "2.0.0", "1.0.2", "1.0"]}, {"category": "Product", "description": "interpro OBO", "format": "obo", "id": "obo-db-ingest.interpro.obo", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "interpro OBO", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "obo-db-ingest"}], "product_file_size": 1166198, "product_url": "https://w3id.org/biopragmatics/resources/interpro/interpro.obo"}, {"category": "Product", "description": "interpro OWL", "format": "owl", "id": "obo-db-ingest.interpro.owl", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "interpro OWL", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "obo-db-ingest"}], "product_file_size": 1347709, "product_url": "https://w3id.org/biopragmatics/resources/interpro/interpro.owl"}, {"category": "Product", "description": "interpro OBO Graph JSON", "format": "json", "id": "obo-db-ingest.interpro.json", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "interpro OBO Graph JSON", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "obo-db-ingest"}], "product_file_size": 1116474, "product_url": "https://w3id.org/biopragmatics/resources/interpro/interpro.json"}, {"category": "MappingProduct", "description": "Files containing transitive assignments of InterPro matches, UniProtKB keywords, subcellular locations, EC numbers, or HAMAP matches to manually-selected GO terms", "format": "txt", "id": "goa.mapping-files", "name": "GO Mapping Files", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "goa"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}], "product_url": "https://ftp.ebi.ac.uk/pub/databases/GO/goa/external2go/"}, {"category": "GraphicalInterface", "description": "Interactive Shiny web interface for exploring and visualizing human kinase-substrate interactions", "format": "http", "id": "kinace.portal", "name": "KiNet Web Portal", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "kinace"}], "product_url": "https://kinet.kinametrix.com/", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "coralkinome"}, {"relation_type": "prov:wasDerivedFrom", "source": "darkkinasekb"}, {"relation_type": "prov:wasDerivedFrom", "source": "epsd"}, {"relation_type": "prov:wasDerivedFrom", "source": "hgnc"}, {"relation_type": "prov:wasDerivedFrom", "source": "interpro"}, {"relation_type": "prov:wasDerivedFrom", "source": "iptmnet"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "kinhub"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "uniprot"}]}, {"category": "GraphProduct", "compression": "gzip", "description": "protein network data (full network, scored links between proteins)", "format": "txt", "id": "string.protein.links", "name": "STRING Protein Links", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "biocyc"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "cog"}, {"relation_type": "prov:hadPrimarySource", "source": "compartments"}, {"relation_type": "prov:hadPrimarySource", "source": "dip"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "eggnog"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "flybase"}, {"relation_type": "prov:hadPrimarySource", "source": "geo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hprd"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "mint"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}, {"relation_type": "prov:hadPrimarySource", "source": "pdb"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "progenomes"}, {"relation_type": "prov:hadPrimarySource", "source": "proteomehd"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmedcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "sgd"}, {"relation_type": "prov:hadPrimarySource", "source": "simap"}, {"relation_type": "prov:hadPrimarySource", "source": "smart"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "swissmodel"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}, {"relation_type": "prov:hadPrimarySource", "source": "wormbase"}], "product_file_size": 138154280240, "product_url": "https://stringdb-downloads.org/download/protein.links.v12.0.txt.gz"}, {"category": "GraphProduct", "compression": "gzip", "description": "protein network data (full network, incl. subscores per channel)", "format": "txt", "id": "string.protein.links.detailed", "name": "STRING Protein Links Detailed", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "biocyc"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "cog"}, {"relation_type": "prov:hadPrimarySource", "source": "compartments"}, {"relation_type": "prov:hadPrimarySource", "source": "dip"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "eggnog"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "flybase"}, {"relation_type": "prov:hadPrimarySource", "source": "geo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hprd"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "mint"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}, {"relation_type": "prov:hadPrimarySource", "source": "pdb"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "progenomes"}, {"relation_type": "prov:hadPrimarySource", "source": "proteomehd"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmedcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "sgd"}, {"relation_type": "prov:hadPrimarySource", "source": "simap"}, {"relation_type": "prov:hadPrimarySource", "source": "smart"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "swissmodel"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}, {"relation_type": "prov:hadPrimarySource", "source": "wormbase"}], "product_file_size": 203534412387, "product_url": "https://stringdb-downloads.org/download/protein.links.detailed.v12.0.txt.gz"}, {"category": "GraphProduct", "compression": "gzip", "description": "protein network data (full network, incl. distinction: direct vs. interologs)", "format": "txt", "id": "string.protein.links.full", "name": "STRING Protein Links Full", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "biocyc"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "cog"}, {"relation_type": "prov:hadPrimarySource", "source": "compartments"}, {"relation_type": "prov:hadPrimarySource", "source": "dip"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "eggnog"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "flybase"}, {"relation_type": "prov:hadPrimarySource", "source": "geo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hprd"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "mint"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}, {"relation_type": "prov:hadPrimarySource", "source": "pdb"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "progenomes"}, {"relation_type": "prov:hadPrimarySource", "source": "proteomehd"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmedcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "sgd"}, {"relation_type": "prov:hadPrimarySource", "source": "simap"}, {"relation_type": "prov:hadPrimarySource", "source": "smart"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "swissmodel"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}, {"relation_type": "prov:hadPrimarySource", "source": "wormbase"}], "product_file_size": 214269334954, "product_url": "https://stringdb-downloads.org/download/protein.links.full.v12.0.txt.gz"}, {"category": "GraphProduct", "compression": "gzip", "description": "protein network data (physical subnetwork, scored links between proteins)", "format": "txt", "id": "string.protein.physical.links", "name": "STRING Protein Physical Links", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "biocyc"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "cog"}, {"relation_type": "prov:hadPrimarySource", "source": "compartments"}, {"relation_type": "prov:hadPrimarySource", "source": "dip"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "eggnog"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "flybase"}, {"relation_type": "prov:hadPrimarySource", "source": "geo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hprd"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "mint"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}, {"relation_type": "prov:hadPrimarySource", "source": "pdb"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "progenomes"}, {"relation_type": "prov:hadPrimarySource", "source": "proteomehd"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmedcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "sgd"}, {"relation_type": "prov:hadPrimarySource", "source": "simap"}, {"relation_type": "prov:hadPrimarySource", "source": "smart"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "swissmodel"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}, {"relation_type": "prov:hadPrimarySource", "source": "wormbase"}], "product_file_size": 11867396121, "product_url": "https://stringdb-downloads.org/download/protein.physical.links.v12.0.txt.gz"}, {"category": "GraphProduct", "compression": "gzip", "description": "protein network data (physical subnetwork, incl. subscores per channel)", "format": "txt", "id": "string.protein.physical.links.detailed", "name": "STRING Protein Physical Links Detailed", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "biocyc"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "cog"}, {"relation_type": "prov:hadPrimarySource", "source": "compartments"}, {"relation_type": "prov:hadPrimarySource", "source": "dip"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "eggnog"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "flybase"}, {"relation_type": "prov:hadPrimarySource", "source": "geo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hprd"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "mint"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}, {"relation_type": "prov:hadPrimarySource", "source": "pdb"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "progenomes"}, {"relation_type": "prov:hadPrimarySource", "source": "proteomehd"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmedcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "sgd"}, {"relation_type": "prov:hadPrimarySource", "source": "simap"}, {"relation_type": "prov:hadPrimarySource", "source": "smart"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "swissmodel"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}, {"relation_type": "prov:hadPrimarySource", "source": "wormbase"}], "product_file_size": 14859366689, "product_url": "https://stringdb-downloads.org/download/protein.physical.links.detailed.v12.0.txt.gz"}, {"category": "GraphProduct", "compression": "gzip", "description": "protein network data (physical subnetwork, incl. distinction: direct vs. interologs)", "format": "txt", "id": "string.protein.physical.links.full", "name": "STRING Protein Physical Links Full", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "biocyc"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "cog"}, {"relation_type": "prov:hadPrimarySource", "source": "compartments"}, {"relation_type": "prov:hadPrimarySource", "source": "dip"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "eggnog"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "flybase"}, {"relation_type": "prov:hadPrimarySource", "source": "geo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hprd"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "mint"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}, {"relation_type": "prov:hadPrimarySource", "source": "pdb"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "progenomes"}, {"relation_type": "prov:hadPrimarySource", "source": "proteomehd"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmedcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "sgd"}, {"relation_type": "prov:hadPrimarySource", "source": "simap"}, {"relation_type": "prov:hadPrimarySource", "source": "smart"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "swissmodel"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}, {"relation_type": "prov:hadPrimarySource", "source": "wormbase"}], "product_file_size": 15528028374, "product_url": "https://stringdb-downloads.org/download/protein.physical.links.full.v12.0.txt.gz"}, {"category": "GraphProduct", "compression": "gzip", "description": "association scores between orthologous groups", "format": "txt", "id": "string.cog.links", "name": "STRING COG Links", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "biocyc"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "cog"}, {"relation_type": "prov:hadPrimarySource", "source": "compartments"}, {"relation_type": "prov:hadPrimarySource", "source": "dip"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "eggnog"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "flybase"}, {"relation_type": "prov:hadPrimarySource", "source": "geo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hprd"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "mint"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}, {"relation_type": "prov:hadPrimarySource", "source": "pdb"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "progenomes"}, {"relation_type": "prov:hadPrimarySource", "source": "proteomehd"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmedcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "sgd"}, {"relation_type": "prov:hadPrimarySource", "source": "simap"}, {"relation_type": "prov:hadPrimarySource", "source": "smart"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "swissmodel"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}, {"relation_type": "prov:hadPrimarySource", "source": "wormbase"}], "product_file_size": 185338269, "product_url": "https://stringdb-downloads.org/download/COG.links.v12.0.txt.gz"}, {"category": "GraphProduct", "compression": "gzip", "description": "association scores (incl. subscores per channel)", "format": "txt", "id": "string.cog.links.detailed", "name": "STRING COG Links Detailed", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "biocyc"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "cog"}, {"relation_type": "prov:hadPrimarySource", "source": "compartments"}, {"relation_type": "prov:hadPrimarySource", "source": "dip"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "eggnog"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "flybase"}, {"relation_type": "prov:hadPrimarySource", "source": "geo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hprd"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "mint"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}, {"relation_type": "prov:hadPrimarySource", "source": "pdb"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "progenomes"}, {"relation_type": "prov:hadPrimarySource", "source": "proteomehd"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmedcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "sgd"}, {"relation_type": "prov:hadPrimarySource", "source": "simap"}, {"relation_type": "prov:hadPrimarySource", "source": "smart"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "swissmodel"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}, {"relation_type": "prov:hadPrimarySource", "source": "wormbase"}], "product_file_size": 250279091, "product_url": "https://stringdb-downloads.org/download/COG.links.detailed.v12.0.txt.gz"}, {"category": "GraphProduct", "compression": "gzip", "description": "full database, part II: the networks (nodes, edges, scores,...)", "id": "string.database", "name": "STRING Database Network Schema", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "biocyc"}, {"relation_type": "prov:hadPrimarySource", "source": "biogrid"}, {"relation_type": "prov:hadPrimarySource", "source": "cog"}, {"relation_type": "prov:hadPrimarySource", "source": "compartments"}, {"relation_type": "prov:hadPrimarySource", "source": "dip"}, {"relation_type": "prov:hadPrimarySource", "source": "diseases"}, {"relation_type": "prov:hadPrimarySource", "source": "eggnog"}, {"relation_type": "prov:hadPrimarySource", "source": "ensembl"}, {"relation_type": "prov:hadPrimarySource", "source": "flybase"}, {"relation_type": "prov:hadPrimarySource", "source": "geo"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hgnc"}, {"relation_type": "prov:hadPrimarySource", "source": "hprd"}, {"relation_type": "prov:hadPrimarySource", "source": "intact"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "kegg"}, {"relation_type": "prov:hadPrimarySource", "source": "mint"}, {"relation_type": "prov:hadPrimarySource", "source": "omim"}, {"relation_type": "prov:hadPrimarySource", "source": "pdb"}, {"relation_type": "prov:hadPrimarySource", "source": "pfam"}, {"relation_type": "prov:hadPrimarySource", "source": "progenomes"}, {"relation_type": "prov:hadPrimarySource", "source": "proteomehd"}, {"relation_type": "prov:hadPrimarySource", "source": "pubmedcentral"}, {"relation_type": "prov:hadPrimarySource", "source": "reactome"}, {"relation_type": "prov:hadPrimarySource", "source": "refseq"}, {"relation_type": "prov:hadPrimarySource", "source": "sgd"}, {"relation_type": "prov:hadPrimarySource", "source": "simap"}, {"relation_type": "prov:hadPrimarySource", "source": "smart"}, {"relation_type": "prov:hadPrimarySource", "source": "string"}, {"relation_type": "prov:hadPrimarySource", "source": "swissmodel"}, {"relation_type": "prov:hadPrimarySource", "source": "tissues"}, {"relation_type": "prov:hadPrimarySource", "source": "uniprot"}, {"relation_type": "prov:hadPrimarySource", "source": "wikipathways"}, {"relation_type": "prov:hadPrimarySource", "source": "wormbase"}], "product_file_size": 281505096430, "product_url": "https://stringdb-downloads.org/download/network_schema.v12.0.sql.gz"}, {"category": "Product", "description": "interpro Nodes TSV", "format": "tsv", "id": "obo-db-ingest.interpro.tsv", "license": {"id": "https://creativecommons.org/publicdomain/zero/1.0/", "label": "CC0-1.0"}, "name": "interpro Nodes TSV", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "obo-db-ingest"}], "product_file_size": 697846, "product_url": "https://w3id.org/biopragmatics/resources/interpro/interpro.tsv"}, {"category": "GraphProduct", "description": "InterPro domain is_a domain edges", "format": "csv", "id": "prokn.interpro.domain.is_a.domain.edges", "name": "ProKN InterPro Domain Hierarchy Edges", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "prokn"}], "product_file_size": 171040, "product_url": "https://research.bioinformatics.udel.edu/prokn_dp/downloads/current/InterPro.Domain.IS_A.Domain.edges.csv"}, {"category": "GraphProduct", "description": "InterPro protein has domain edges", "format": "csv", "id": "prokn.interpro.protein.has_domain.domain.edges", "name": "ProKN InterPro Domain Edges", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "interpro"}, {"relation_type": "prov:hadPrimarySource", "source": "prokn"}], "product_file_size": 4696849, "product_url": "https://research.bioinformatics.udel.edu/prokn_dp/downloads/current/InterPro.Protein.HAS_DOMAIN.Domain.edges.csv"}, {"category": "GraphProduct", "description": "Merged knowledge graph data files containing over 400,000 nodes and 5,000,000 edges integrating gene expression, molecular interactions, functions, pathways, homology-based annotations, and environmental exposures from Planteome, EMBL-EBI Expression Atlas, and other sources. Available as tab-separated value files in KGX format with nodes and edges following the Biolink model.", "id": "genophenoenvo-kg.data", "name": "GenoPhenoEnvo KG Data", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "genophenoenvo-kg"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "po"}, {"relation_type": "prov:hadPrimarySource", "source": "to"}, {"relation_type": "prov:hadPrimarySource", "source": "peco"}, {"relation_type": "prov:hadPrimarySource", "source": "tair"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}], "product_url": "https://datacommons.cyverse.org/browse/iplant/home/shared/genophenoenvo"}, {"category": "Product", "description": "Bulk download of DisProt data in multiple formats including JSON, TSV, FASTA, and GAF", "format": "json", "id": "disprot.downloads", "name": "DisProt Downloads", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "disprot"}], "product_url": "https://www.disprot.org/download", "secondary_source": [{"relation_type": "prov:wasInformedBy", "source": "uniprot"}, {"relation_type": "prov:wasInformedBy", "source": "interpro"}, {"relation_type": "prov:wasInformedBy", "source": "go"}, {"relation_type": "prov:wasInformedBy", "source": "eco"}]}, {"category": "Product", "description": "Harmonizome 3.0 processed dataset downloads, including dataset-specific association files and knowledge graph serialization downloads.", "format": "mixed", "id": "harmonizome.downloads", "name": "Harmonizome Downloads", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "harmonizome"}], "product_url": "https://maayanlab.cloud/Harmonizome/download", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "achilles"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogps"}, {"relation_type": "prov:wasDerivedFrom", "source": "ccle"}, {"relation_type": "prov:wasDerivedFrom", "source": "cellmarker"}, {"relation_type": "prov:wasDerivedFrom", "source": "chea"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "cmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "compartments"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "cosmic"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "depmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "encode"}, {"relation_type": "prov:wasDerivedFrom", "source": "gdsc"}, {"relation_type": "prov:wasDerivedFrom", "source": "geo"}, {"relation_type": "prov:wasDerivedFrom", "source": "glygen"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gtex"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "hpa"}, {"relation_type": "prov:wasDerivedFrom", "source": "hubmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "impc"}, {"relation_type": "prov:wasDerivedFrom", "source": "interpro"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "lincs-l1000"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "motrpac"}, {"relation_type": "prov:wasDerivedFrom", "source": "mp"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pfocr"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "tcga"}, {"relation_type": "prov:wasDerivedFrom", "source": "tissues"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}, {"category": "GraphProduct", "description": "Neo4j knowledge graph serialization of Harmonizome processed datasets, including genes, attributes, resources, datasets, and gene-attribute associations.", "dump_format": "neo4j", "format": "neo4j", "id": "harmonizome.kg-neo4j", "latest_version": "3.0", "name": "Harmonizome Knowledge Graph Neo4j Database", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "harmonizome"}], "product_url": "https://harmonizome-kg.maayanlab.cloud/", "secondary_source": [{"relation_type": "prov:wasDerivedFrom", "source": "achilles"}, {"relation_type": "prov:wasDerivedFrom", "source": "biogps"}, {"relation_type": "prov:wasDerivedFrom", "source": "ccle"}, {"relation_type": "prov:wasDerivedFrom", "source": "cellmarker"}, {"relation_type": "prov:wasDerivedFrom", "source": "chea"}, {"relation_type": "prov:wasDerivedFrom", "source": "clinvar"}, {"relation_type": "prov:wasDerivedFrom", "source": "cmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "compartments"}, {"relation_type": "prov:wasDerivedFrom", "source": "corum"}, {"relation_type": "prov:wasDerivedFrom", "source": "cosmic"}, {"relation_type": "prov:wasDerivedFrom", "source": "ctd"}, {"relation_type": "prov:wasDerivedFrom", "source": "depmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "diseases"}, {"relation_type": "prov:wasDerivedFrom", "source": "disgenet"}, {"relation_type": "prov:wasDerivedFrom", "source": "drugbank"}, {"relation_type": "prov:wasDerivedFrom", "source": "encode"}, {"relation_type": "prov:wasDerivedFrom", "source": "gdsc"}, {"relation_type": "prov:wasDerivedFrom", "source": "geo"}, {"relation_type": "prov:wasDerivedFrom", "source": "glygen"}, {"relation_type": "prov:wasDerivedFrom", "source": "go"}, {"relation_type": "prov:wasDerivedFrom", "source": "gtex"}, {"relation_type": "prov:wasDerivedFrom", "source": "gwascatalog"}, {"relation_type": "prov:wasDerivedFrom", "source": "hmdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "hp"}, {"relation_type": "prov:wasDerivedFrom", "source": "hpa"}, {"relation_type": "prov:wasDerivedFrom", "source": "hubmap"}, {"relation_type": "prov:wasDerivedFrom", "source": "impc"}, {"relation_type": "prov:wasDerivedFrom", "source": "interpro"}, {"relation_type": "prov:wasDerivedFrom", "source": "kegg"}, {"relation_type": "prov:wasDerivedFrom", "source": "lincs-l1000"}, {"relation_type": "prov:wasDerivedFrom", "source": "mirtarbase"}, {"relation_type": "prov:wasDerivedFrom", "source": "motrpac"}, {"relation_type": "prov:wasDerivedFrom", "source": "mp"}, {"relation_type": "prov:wasDerivedFrom", "source": "msigdb"}, {"relation_type": "prov:wasDerivedFrom", "source": "omim"}, {"relation_type": "prov:wasDerivedFrom", "source": "panther"}, {"relation_type": "prov:wasDerivedFrom", "source": "pathwaycommons"}, {"relation_type": "prov:wasDerivedFrom", "source": "pfocr"}, {"relation_type": "prov:wasDerivedFrom", "source": "phosphositeplus"}, {"relation_type": "prov:wasDerivedFrom", "source": "pid"}, {"relation_type": "prov:wasDerivedFrom", "source": "reactome"}, {"relation_type": "prov:wasDerivedFrom", "source": "tcga"}, {"relation_type": "prov:wasDerivedFrom", "source": "tissues"}, {"relation_type": "prov:wasDerivedFrom", "source": "wikipathways"}]}], "publications": [{"authors": ["Blum M", "Andreeva A", "Florentino LC", "Chuguransky SR", "Grego T", "Hobbs E", "Pinto BL", "Orr A", "Paysan-Lafosse T", "Ponamareva I", "Salazar GA", "Bordin N", "Bork P", "Bridge A", "Colwell L", "Gough J", "Haft DH", "Letunic I", "Llinares-L\u00f3pez F", "Marchler-Bauer A", "Meng-Papaxanthos L", "Mi H", "Natale DA", "Orengo CA", "Pandurangan AP", "Piovesan D", "Rivoire C", "Sigrist CJA", "Thanki N", "Thibaud-Nissen F", "Thomas PD", "Tosatto SCE", "Wu CH", "Bateman A"], "doi": "doi:10.1093/nar/gkae1082", "id": "doi:10.1093/nar/gkae1082", "preferred": true, "title": "InterPro: the protein sequence classification resource in 2025", "year": "2024"}], "repository": "https://www.ebi.ac.uk/interpro/"}