VEuPathDB ontology
An ontology is developed to support Eukaryotic Pathogen, Host & Vector Genomics Resource (VEuPathDB; https://veupathdb.org).
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{"activity_status": "inactive", "category": "Ontology", "collection": ["obo-foundry"], "contacts": [{"category": "Individual", "contact_details": [{"contact_type": "email", "value": "jiezhen@med.umich.edu"}, {"contact_type": "github", "value": "zhengj2007"}], "label": "Jie Zheng", "orcid": "0000-0002-2999-0103"}], "creation_date": "2025-09-29T00:00:00Z", "description": "An ontology is developed to support Eukaryotic Pathogen, Host & Vector Genomics Resource (VEuPathDB; https://veupathdb.org).", "domains": ["biological systems", "organisms"], "homepage_url": "https://github.com/VEuPathDB-ontology/VEuPathDB-ontology", "id": "eupath", "last_modified_date": "2026-08-06T00:00:00Z", "layout": "resource_detail", "license": {"id": "http://creativecommons.org/licenses/by/4.0/", "label": "CC BY 4.0", "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png"}, "name": "VEuPathDB ontology", "products": [{"category": "OntologyProduct", "description": "VEuPathDB ontology in OWL format", "format": "owl", "id": "eupath.owl", "name": "eupath.owl", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "eupath"}], "product_file_size": 438457, "product_url": "http://purl.obolibrary.org/obo/eupath.owl"}, {"category": "GraphProduct", "compression": "targz", "description": "KGX TSV transform of VEuPathDB Ontology (EUPATH), produced by KG-Bioportal from the BioPortal submission. The archive contains EUPATH_nodes.tsv and EUPATH_edges.tsv.", "edge_count": 13057, "format": "kgx", "id": "eupath.kg-bioportal", "latest_version": "2023-05-30", "name": "EUPATH KGX graph (KG-Bioportal)", "node_count": 6164, "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "eupath"}], "product_file_size": 396273, "product_url": "https://github.com/ncbo/kg-bioportal/releases/download/data-2026.07/EUPATH.tar.gz"}], "publications": [{"authors": ["Zheng, Jie", "Cade, JasShon", "Brunk, Brian", "Roos, David", "Stoeckert, Christian", "James, San", "Arinaitwe, Emmanuel", "Greenhouse, Bryan", "Dorsey, Grant", "Sullivan, Steven", "Carlton, Jane", "Carrasco-Escobar, Gabriel", "Gamboa, Dionicia", "Maguina-Mercedes, Paula", "Vinetz, Joseph"], "doi": "10.5281/zenodo.6685957", "id": "https://doi.org/10.5281/zenodo.6685957", "journal": "Zenodo", "title": "Malaria study data integration and information retrieval based on OBO Foundry ontologies.", "year": "2016"}], "repository": "https://github.com/VEuPathDB-ontology/VEuPathDB-ontology"}