Plant Ontology
The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data.
[{"category": "Individual", "contact_details": [{"contact_type": "email", "value": "jaiswalp@science.oregonstate.edu"}, {"contact_type": "github", "value": "jaiswalp"}], "label": "Pankaj Jaiswal", "orcid": "0000-0002-1005-8383"}]
[{"category": "OntologyProduct", "description": "Plant Ontology in OWL format", "format": "owl", "id": "po.owl", "name": "po.owl", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "po"}], "product_file_size": 360811, "product_url": "http://purl.obolibrary.org/obo/po.owl"}, {"category": "OntologyProduct", "description": "Plant Ontology in OBO format", "format": "obo", "id": "po.obo", "name": "po.obo", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "po"}], "product_file_size": 222891, "product_url": "http://purl.obolibrary.org/obo/po.obo"}, {"category": "OntologyProduct", "description": "The latest release of EFO in OWL format", "format": "owl", "id": "efo.owl", "name": "EFO OWL", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bfo"}, {"relation_type": "prov:hadPrimarySource", "source": "bto"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "clo"}, {"relation_type": "prov:hadPrimarySource", "source": "cob"}, {"relation_type": "prov:hadPrimarySource", "source": "dc"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "ecto"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "fbbt"}, {"relation_type": "prov:hadPrimarySource", "source": "fbdv"}, {"relation_type": "prov:hadPrimarySource", "source": "fma"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hancestro"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "iao"}, {"relation_type": "prov:hadPrimarySource", "source": "ido"}, {"relation_type": "prov:hadPrimarySource", "source": "ma"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "mp"}, {"relation_type": "prov:hadPrimarySource", "source": "mpath"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "ncit"}, {"relation_type": "prov:hadPrimarySource", "source": "oba"}, {"relation_type": "prov:hadPrimarySource", "source": "obi"}, {"relation_type": "prov:hadPrimarySource", "source": "ogms"}, {"relation_type": "prov:hadPrimarySource", "source": "oio"}, {"relation_type": "prov:hadPrimarySource", "source": "omit"}, {"relation_type": "prov:hadPrimarySource", "source": "omo"}, {"relation_type": "prov:hadPrimarySource", "source": "ordo"}, {"relation_type": "prov:hadPrimarySource", "source": "pato"}, {"relation_type": "prov:hadPrimarySource", "source": "po"}, {"relation_type": "prov:hadPrimarySource", "source": "pr"}, {"relation_type": "prov:hadPrimarySource", "source": "ro"}, {"relation_type": "prov:hadPrimarySource", "source": "semapv"}, {"relation_type": "prov:hadPrimarySource", "source": "skos"}, {"relation_type": "prov:hadPrimarySource", "source": "so"}, {"relation_type": "prov:hadPrimarySource", "source": "to"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "uo"}, {"relation_type": "prov:hadPrimarySource", "source": "wbls"}, {"relation_type": "prov:hadPrimarySource", "source": "zfa"}], "product_file_size": 240665663, "product_url": "https://www.ebi.ac.uk/efo/efo.owl"}, {"category": "OntologyProduct", "description": "The latest release of EFO in OBO format", "format": "obo", "id": "efo.obo", "name": "EFO OBO", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bfo"}, {"relation_type": "prov:hadPrimarySource", "source": "bto"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "clo"}, {"relation_type": "prov:hadPrimarySource", "source": "cob"}, {"relation_type": "prov:hadPrimarySource", "source": "dc"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "ecto"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "fbbt"}, {"relation_type": "prov:hadPrimarySource", "source": "fbdv"}, {"relation_type": "prov:hadPrimarySource", "source": "fma"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hancestro"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "iao"}, {"relation_type": "prov:hadPrimarySource", "source": "ido"}, {"relation_type": "prov:hadPrimarySource", "source": "ma"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "mp"}, {"relation_type": "prov:hadPrimarySource", "source": "mpath"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "ncit"}, {"relation_type": "prov:hadPrimarySource", "source": "oba"}, {"relation_type": "prov:hadPrimarySource", "source": "obi"}, {"relation_type": "prov:hadPrimarySource", "source": "ogms"}, {"relation_type": "prov:hadPrimarySource", "source": "oio"}, {"relation_type": "prov:hadPrimarySource", "source": "omit"}, {"relation_type": "prov:hadPrimarySource", "source": "omo"}, {"relation_type": "prov:hadPrimarySource", "source": "ordo"}, {"relation_type": "prov:hadPrimarySource", "source": "pato"}, {"relation_type": "prov:hadPrimarySource", "source": "po"}, {"relation_type": "prov:hadPrimarySource", "source": "pr"}, {"relation_type": "prov:hadPrimarySource", "source": "ro"}, {"relation_type": "prov:hadPrimarySource", "source": "semapv"}, {"relation_type": "prov:hadPrimarySource", "source": "skos"}, {"relation_type": "prov:hadPrimarySource", "source": "so"}, {"relation_type": "prov:hadPrimarySource", "source": "to"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "uo"}, {"relation_type": "prov:hadPrimarySource", "source": "wbls"}, {"relation_type": "prov:hadPrimarySource", "source": "zfa"}], "product_file_size": 64058275, "product_url": "https://www.ebi.ac.uk/efo/efo.obo"}, {"category": "GraphProduct", "description": "Merged knowledge graph data files containing over 400,000 nodes and 5,000,000 edges integrating gene expression, molecular interactions, functions, pathways, homology-based annotations, and environmental exposures from Planteome, EMBL-EBI Expression Atlas, and other sources. Available as tab-separated value files in KGX format with nodes and edges following the Biolink model.", "id": "genophenoenvo-kg.data", "name": "GenoPhenoEnvo KG Data", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "genophenoenvo-kg"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "po"}, {"relation_type": "prov:hadPrimarySource", "source": "to"}, {"relation_type": "prov:hadPrimarySource", "source": "peco"}, {"relation_type": "prov:hadPrimarySource", "source": "tair"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}], "product_url": "https://datacommons.cyverse.org/browse/iplant/home/shared/genophenoenvo"}]
{"activity_status": "active", "category": "Ontology", "collection": ["obo-foundry"], "contacts": [{"category": "Individual", "contact_details": [{"contact_type": "email", "value": "jaiswalp@science.oregonstate.edu"}, {"contact_type": "github", "value": "jaiswalp"}], "label": "Pankaj Jaiswal", "orcid": "0000-0002-1005-8383"}], "creation_date": "2025-06-25T00:00:00Z", "description": "The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data.", "domains": ["anatomy and development"], "homepage_url": "http://browser.planteome.org/amigo", "id": "po", "last_modified_date": "2026-04-15T00:00:00Z", "layout": "resource_detail", "license": {"id": "https://creativecommons.org/licenses/by/4.0/", "label": "CC BY 4.0", "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png"}, "name": "Plant Ontology", "products": [{"category": "OntologyProduct", "description": "Plant Ontology in OWL format", "format": "owl", "id": "po.owl", "name": "po.owl", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "po"}], "product_file_size": 360811, "product_url": "http://purl.obolibrary.org/obo/po.owl"}, {"category": "OntologyProduct", "description": "Plant Ontology in OBO format", "format": "obo", "id": "po.obo", "name": "po.obo", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "po"}], "product_file_size": 222891, "product_url": "http://purl.obolibrary.org/obo/po.obo"}, {"category": "OntologyProduct", "description": "The latest release of EFO in OWL format", "format": "owl", "id": "efo.owl", "name": "EFO OWL", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bfo"}, {"relation_type": "prov:hadPrimarySource", "source": "bto"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "clo"}, {"relation_type": "prov:hadPrimarySource", "source": "cob"}, {"relation_type": "prov:hadPrimarySource", "source": "dc"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "ecto"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "fbbt"}, {"relation_type": "prov:hadPrimarySource", "source": "fbdv"}, {"relation_type": "prov:hadPrimarySource", "source": "fma"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hancestro"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "iao"}, {"relation_type": "prov:hadPrimarySource", "source": "ido"}, {"relation_type": "prov:hadPrimarySource", "source": "ma"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "mp"}, {"relation_type": "prov:hadPrimarySource", "source": "mpath"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "ncit"}, {"relation_type": "prov:hadPrimarySource", "source": "oba"}, {"relation_type": "prov:hadPrimarySource", "source": "obi"}, {"relation_type": "prov:hadPrimarySource", "source": "ogms"}, {"relation_type": "prov:hadPrimarySource", "source": "oio"}, {"relation_type": "prov:hadPrimarySource", "source": "omit"}, {"relation_type": "prov:hadPrimarySource", "source": "omo"}, {"relation_type": "prov:hadPrimarySource", "source": "ordo"}, {"relation_type": "prov:hadPrimarySource", "source": "pato"}, {"relation_type": "prov:hadPrimarySource", "source": "po"}, {"relation_type": "prov:hadPrimarySource", "source": "pr"}, {"relation_type": "prov:hadPrimarySource", "source": "ro"}, {"relation_type": "prov:hadPrimarySource", "source": "semapv"}, {"relation_type": "prov:hadPrimarySource", "source": "skos"}, {"relation_type": "prov:hadPrimarySource", "source": "so"}, {"relation_type": "prov:hadPrimarySource", "source": "to"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "uo"}, {"relation_type": "prov:hadPrimarySource", "source": "wbls"}, {"relation_type": "prov:hadPrimarySource", "source": "zfa"}], "product_file_size": 240665663, "product_url": "https://www.ebi.ac.uk/efo/efo.owl"}, {"category": "OntologyProduct", "description": "The latest release of EFO in OBO format", "format": "obo", "id": "efo.obo", "name": "EFO OBO", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "bfo"}, {"relation_type": "prov:hadPrimarySource", "source": "bto"}, {"relation_type": "prov:hadPrimarySource", "source": "chebi"}, {"relation_type": "prov:hadPrimarySource", "source": "cl"}, {"relation_type": "prov:hadPrimarySource", "source": "clo"}, {"relation_type": "prov:hadPrimarySource", "source": "cob"}, {"relation_type": "prov:hadPrimarySource", "source": "dc"}, {"relation_type": "prov:hadPrimarySource", "source": "doid"}, {"relation_type": "prov:hadPrimarySource", "source": "ecto"}, {"relation_type": "prov:hadPrimarySource", "source": "efo"}, {"relation_type": "prov:hadPrimarySource", "source": "fbbt"}, {"relation_type": "prov:hadPrimarySource", "source": "fbdv"}, {"relation_type": "prov:hadPrimarySource", "source": "fma"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "hancestro"}, {"relation_type": "prov:hadPrimarySource", "source": "hp"}, {"relation_type": "prov:hadPrimarySource", "source": "iao"}, {"relation_type": "prov:hadPrimarySource", "source": "ido"}, {"relation_type": "prov:hadPrimarySource", "source": "ma"}, {"relation_type": "prov:hadPrimarySource", "source": "mondo"}, {"relation_type": "prov:hadPrimarySource", "source": "mp"}, {"relation_type": "prov:hadPrimarySource", "source": "mpath"}, {"relation_type": "prov:hadPrimarySource", "source": "ncbitaxon"}, {"relation_type": "prov:hadPrimarySource", "source": "ncit"}, {"relation_type": "prov:hadPrimarySource", "source": "oba"}, {"relation_type": "prov:hadPrimarySource", "source": "obi"}, {"relation_type": "prov:hadPrimarySource", "source": "ogms"}, {"relation_type": "prov:hadPrimarySource", "source": "oio"}, {"relation_type": "prov:hadPrimarySource", "source": "omit"}, {"relation_type": "prov:hadPrimarySource", "source": "omo"}, {"relation_type": "prov:hadPrimarySource", "source": "ordo"}, {"relation_type": "prov:hadPrimarySource", "source": "pato"}, {"relation_type": "prov:hadPrimarySource", "source": "po"}, {"relation_type": "prov:hadPrimarySource", "source": "pr"}, {"relation_type": "prov:hadPrimarySource", "source": "ro"}, {"relation_type": "prov:hadPrimarySource", "source": "semapv"}, {"relation_type": "prov:hadPrimarySource", "source": "skos"}, {"relation_type": "prov:hadPrimarySource", "source": "so"}, {"relation_type": "prov:hadPrimarySource", "source": "to"}, {"relation_type": "prov:hadPrimarySource", "source": "uberon"}, {"relation_type": "prov:hadPrimarySource", "source": "uo"}, {"relation_type": "prov:hadPrimarySource", "source": "wbls"}, {"relation_type": "prov:hadPrimarySource", "source": "zfa"}], "product_file_size": 64058275, "product_url": "https://www.ebi.ac.uk/efo/efo.obo"}, {"category": "GraphProduct", "description": "Merged knowledge graph data files containing over 400,000 nodes and 5,000,000 edges integrating gene expression, molecular interactions, functions, pathways, homology-based annotations, and environmental exposures from Planteome, EMBL-EBI Expression Atlas, and other sources. Available as tab-separated value files in KGX format with nodes and edges following the Biolink model.", "id": "genophenoenvo-kg.data", "name": "GenoPhenoEnvo KG Data", "original_source": [{"relation_type": "prov:hadPrimarySource", "source": "genophenoenvo-kg"}, {"relation_type": "prov:hadPrimarySource", "source": "go"}, {"relation_type": "prov:hadPrimarySource", "source": "po"}, {"relation_type": "prov:hadPrimarySource", "source": "to"}, {"relation_type": "prov:hadPrimarySource", "source": "peco"}, {"relation_type": "prov:hadPrimarySource", "source": "tair"}, {"relation_type": "prov:hadPrimarySource", "source": "interpro"}], "product_url": "https://datacommons.cyverse.org/browse/iplant/home/shared/genophenoenvo"}], "publications": [{"id": "https://www.ncbi.nlm.nih.gov/pubmed/23220694", "title": "The plant ontology as a tool for comparative plant anatomy and genomic analyses."}, {"id": "https://www.ncbi.nlm.nih.gov/pubmed/29186578", "title": "The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics."}], "repository": "https://github.com/Planteome/plant-ontology", "taxon": ["NCBITaxon:33090"]}