kg_microbe.transform_utils.uniprot_functional_microbes package

Submodules

kg_microbe.transform_utils.uniprot_functional_microbes.uniprot_functional_microbes module

Uniprot Transform class.

class kg_microbe.transform_utils.uniprot_functional_microbes.uniprot_functional_microbes.UniprotFunctionalMicrobesTransform(input_dir=None, output_dir=None)

Bases: Transform

A class used to represent a transformation process for UniProt data.

run(data_file=None, show_status=True)

Load Uniprot data from downloaded files, then transforms into graph format.

Module contents

Uniprot Functional Microbes transform.

class kg_microbe.transform_utils.uniprot_functional_microbes.UniprotFunctionalMicrobesTransform(input_dir=None, output_dir=None)

Bases: Transform

A class used to represent a transformation process for UniProt data.

run(data_file=None, show_status=True)

Load Uniprot data from downloaded files, then transforms into graph format.