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KG-Hub: A collection of biological and biomedical Knowledge Graphs, including their component data sources.
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KG-Hub Projects
The table below lists active KG projects.
| Name | Description | Graph | Source Code |
|---|---|---|---|
| kg-obo | KG-OBO: OBO ontologies into KGX TSV format. | https://kghub.io/kg-obo/ | https://github.com/Knowledge-Graph-Hub/kg-obo |
| kg-idg | KG-IDG: a Knowledge Graph for Illuminating the Druggable Genome. | https://kghub.io/kg-idg/ | https://github.com/Knowledge-Graph-Hub/kg-idg |
| kg-covid-19 | KG-COVID-19: a knowledge graph for COVID-19 and SARS-COV-2. | https://kghub.io/kg-covid-19/ | https://github.com/Knowledge-Graph-Hub/kg-covid-19 |
| kg-microbe | KG-Microbe: a knowledge graph for microbial traits. | https://kghub.io/kg-microbe/ | https://github.com/Knowledge-Graph-Hub/kg-microbe |
| eco-kg | eco-KG: a knowledge graph of plant traits starting with Planteome and EOL TraitBank. | https://kghub.io/eco-kg/ | https://github.com/Knowledge-Graph-Hub/eco-kg |
| monarch | Graph representation of the Monarch Initiative knowledge resource. | https://kghub.io/kg-monarch/ | https://github.com/monarch-initiative |
| kg-phenio | Graph representation of Monarch ontologies. | https://kghub.io/kg-phenio/ | https://github.com/Knowledge-Graph-Hub/kg-phenio |
| sldb | A graph of synthetic lethal interactions. | https://kghub.io/sldb/ | https://github.com/monarch-initiative/SLDBGen |
| rna-kg | A graph integrating knowledge about human RNAs. A preprint describing this project is [here](https://arxiv.org/abs/2312.00183) | https://github.com/AnacletoLAB/RNA-KG | https://github.com/AnacletoLAB/RNA-KG |
| kg-enp | Experimental natural products knowledge graph. | https://enpkg.commons-lab.org/ | https://github.com/AnacletoLAB/RNA-KG |