Python Module Index

k | q | t


	k
	`kg_microbe`
	`kg_microbe.bactotraits_to_mongo`
	`kg_microbe.download`
	`kg_microbe.merge_utils`
	`kg_microbe.merge_utils.artifact_manifest`
	`kg_microbe.merge_utils.external_node_closure`
	`kg_microbe.merge_utils.invariants`
	`kg_microbe.merge_utils.local_context`
	`kg_microbe.merge_utils.merge_kg`
	`kg_microbe.merge_utils.source_admission`
	`kg_microbe.merge_utils.source_freshness`
	`kg_microbe.merge_utils.stats_provenance`
	`kg_microbe.query`
	`kg_microbe.query_utils`
	`kg_microbe.query_utils.duckdb_loader`
	`kg_microbe.query_utils.organism_queries`
	`kg_microbe.query_utils.utils`
	`kg_microbe.run`
	`kg_microbe.transform`
	`kg_microbe.transform_utils`
	`kg_microbe.transform_utils.bacdive`
	`kg_microbe.transform_utils.bacdive.bacdive`
	`kg_microbe.transform_utils.bacdive.emission`
	`kg_microbe.transform_utils.bactotraits`
	`kg_microbe.transform_utils.bactotraits.bactotraits`
	`kg_microbe.transform_utils.bakta`
	`kg_microbe.transform_utils.bakta.bakta`
	`kg_microbe.transform_utils.bakta.create_samn_mapping`
	`kg_microbe.transform_utils.bakta.utils`
	`kg_microbe.transform_utils.cog`
	`kg_microbe.transform_utils.cog.cog`
	`kg_microbe.transform_utils.cog.utils`
	`kg_microbe.transform_utils.constants`
	`kg_microbe.transform_utils.ctd`
	`kg_microbe.transform_utils.ctd.ctd`
	`kg_microbe.transform_utils.disbiome`
	`kg_microbe.transform_utils.disbiome.disbiome`
	`kg_microbe.transform_utils.example_transform`
	`kg_microbe.transform_utils.gold`
	`kg_microbe.transform_utils.gold.gold`
	`kg_microbe.transform_utils.gtdb`
	`kg_microbe.transform_utils.gtdb.gtdb`
	`kg_microbe.transform_utils.gtdb.utils`
	`kg_microbe.transform_utils.kegg`
	`kg_microbe.transform_utils.kegg.kegg`
	`kg_microbe.transform_utils.kegg.utils`
	`kg_microbe.transform_utils.lpsn`
	`kg_microbe.transform_utils.lpsn.lpsn`
	`kg_microbe.transform_utils.lpsn_api`
	`kg_microbe.transform_utils.lpsn_api.lpsn_api`
	`kg_microbe.transform_utils.madin_etal`
	`kg_microbe.transform_utils.madin_etal.madin_etal`
	`kg_microbe.transform_utils.mediadive`
	`kg_microbe.transform_utils.mediadive.mediadive`
	`kg_microbe.transform_utils.metatraits`
	`kg_microbe.transform_utils.metatraits.io`
	`kg_microbe.transform_utils.metatraits.metatraits`
	`kg_microbe.transform_utils.metatraits_gtdb`
	`kg_microbe.transform_utils.metatraits_gtdb.metatraits_gtdb`
	`kg_microbe.transform_utils.microbedecoder`
	`kg_microbe.transform_utils.microbedecoder.microbedecoder`
	`kg_microbe.transform_utils.microbedecoder.utils`
	`kg_microbe.transform_utils.ontologies`
	`kg_microbe.transform_utils.ontologies.ontologies_transform`
	`kg_microbe.transform_utils.ontologies_stubs`
	`kg_microbe.transform_utils.ontologies_stubs.ontologies_stubs_transform`
	`kg_microbe.transform_utils.prego`
	`kg_microbe.transform_utils.prego.calibration`
	`kg_microbe.transform_utils.prego.prego`
	`kg_microbe.transform_utils.prego.quality`
	`kg_microbe.transform_utils.prego.utils`
	`kg_microbe.transform_utils.rhea_mappings`
	`kg_microbe.transform_utils.rhea_mappings.rhea_mappings`
	`kg_microbe.transform_utils.transform`
	`kg_microbe.transform_utils.uniprot_functional_microbes`
	`kg_microbe.transform_utils.uniprot_functional_microbes.uniprot_functional_microbes`
	`kg_microbe.transform_utils.uniprot_human`
	`kg_microbe.transform_utils.uniprot_human.uniprot_human`
	`kg_microbe.transform_utils.wallen_etal`
	`kg_microbe.transform_utils.wallen_etal.wallen_etal`
	`kg_microbe.utils`
	`kg_microbe.utils.atomic_io`
	`kg_microbe.utils.biolink_hierarchy`
	`kg_microbe.utils.biolink_model`
	`kg_microbe.utils.chemical_mapping_utils`
	`kg_microbe.utils.consolidate_categories`
	`kg_microbe.utils.download_manifest`
	`kg_microbe.utils.download_utils`
	`kg_microbe.utils.dummy_tqdm`
	`kg_microbe.utils.external_identifiers`
	`kg_microbe.utils.fix_list_representations`
	`kg_microbe.utils.foodon_classification`
	`kg_microbe.utils.go_authority`
	`kg_microbe.utils.graph_canonicalization`
	`kg_microbe.utils.graph_schema`
	`kg_microbe.utils.ingredient_identity`
	`kg_microbe.utils.isolation_source_mapping_utils`
	`kg_microbe.utils.lpsn_utils`
	`kg_microbe.utils.mapping_file_utils`
	`kg_microbe.utils.mediadive_bulk_download`
	`kg_microbe.utils.metpo_liveness`
	`kg_microbe.utils.metpo_predicates`
	`kg_microbe.utils.microbial_trait_mappings`
	`kg_microbe.utils.ner_utils`
	`kg_microbe.utils.oak_utils`
	`kg_microbe.utils.ontology_resolution`
	`kg_microbe.utils.ontology_utils`
	`kg_microbe.utils.pandas_utils`
	`kg_microbe.utils.postprocess_artifacts`
	`kg_microbe.utils.provenance`
	`kg_microbe.utils.robot_utils`
	`kg_microbe.utils.sanitize_curies`
	`kg_microbe.utils.source_finalization`
	`kg_microbe.utils.string_coding`
	`kg_microbe.utils.stub_curie_collection`
	`kg_microbe.utils.transform_fingerprint`
	`kg_microbe.utils.tsv_io`
	`kg_microbe.utils.unipathways_utils`
	`kg_microbe.utils.uniprot_utils`
	`kg_microbe.utils.validation_utils`

	q
	`query_utils`
	`query_utils.query`

	t
	`tests`
	`tests.test_transform_class`