is a Data Source.
It is part of the BER collection.
The Biological General Repository for Interaction Datasets (BioGRID) is an open, curated database of genetic, protein, and chemical interaction data, post-translational modifications (PTMs), CRISPR screen results (ORCS), and themed curation project datasets spanning model organisms and human, freely available under the MIT License.
biomedical, proteomics, genomics, systems biology
Unknown
infores:biogrid
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| biogrid.web | BioGRID Website | thebiogrid.org | GraphicalInterface | http | Web interface for browsing, searching... |
| biogrid.api | BioGRID REST API | biogridrest | ProgrammingInterface | http | REST-based web service for programmat... |
| biogrid.interactions.mitab | BIOGRID-ALL-LATEST.mitab.zip | BIOGRID-ALL-LATEST.mitab.zip | GraphProduct | psi_mi_mitab | Latest complete BioGRID interaction d... |
| biogrid.interactions.tab3 | BIOGRID-ALL-LATEST.tab3.zip | BIOGRID-ALL-LATEST.tab3.zip | GraphProduct | tsv | Latest complete BioGRID interaction d... |
| biogrid.ptm | BIOGRID-PTMS-LATEST.ptm.zip | BIOGRID-PTMS-LATEST.ptm.zip | GraphProduct | tsv | Post-translational modification (PTM)... |
| biogrid.chemicals | BIOGRID-CHEMICALS-LATEST.chemtab.zip | BIOGRID-CHEMICALS-LATEST.chemtab.zip | GraphProduct | tsv | Protein-chemical interactions for the... |
| biogrid.identifiers | BIOGRID-IDENTIFIERS-LATEST.tab.zip | BIOGRID-IDENTIFIERS-LATEST.tab.zip | MappingProduct | tsv | A single delimited text file format c... |
| ID | Name | URL | Category | Format | Relation | Description |
|---|---|---|---|---|---|---|
| kg-monarch.graph | KGX Distribution of KG-Monarch | monarch-kg.tar.gz (220.2 MB) | GraphProduct | kgx | had primary source | KGX Distribution of KG-Monarch |
| kg-monarch.graph.jsonl | KGX JSON-L Distribution of KG-Monarch | monarch-kg.jsonl.tar.gz (301.0 MB) | GraphProduct | kgx-jsonl | had primary source | KGX JSON-Lines Distribution of KG-Mon... |
| kg-monarch.graph.rdf | RDF Distribution of KG-Monarch | monarch-kg.nt.gz (838.5 MB) | GraphProduct | rdfxml | had primary source | RDF Distribution of KG-Monarch |
| kg-monarch.graph.neo4j | Neo4j Dump of KG-Monarch | monarch-kg.neo4j.dump (1.3 GB) | GraphProduct | ❔ | had primary source | Neo4j Dump of KG-Monarch |
| kg-monarch.graph.duckdb | DuckDB database of KG-Monarch | monarch-kg.duckdb (6.4 GB) | GraphProduct | ❔ | had primary source | DuckDB database of KG-Monarch |
| kg-monarch.graph.jsonl.edges | KGX JSON-L Distribution of KG-Monarch Edges | monarch-kg_edges.jsonl (14.2 GB) | GraphProduct | kgx-jsonl | had primary source | KGX JSON-Lines Distribution of KG-Mon... |
| kg-monarch.graph.jsonl.nodes | KGX JSON-L Distribution of KG-Monarch Nodes | monarch-kg_nodes.jsonl (1.1 GB) | GraphProduct | kgx-jsonl | had primary source | KGX JSON-Lines Distribution of KG-Mon... |
| kg-monarch.graph.neo4j.edges | Neo4j Dump of KG-Monarch Edges | monarch-kg_edges.neo4j.csv (4.1 GB) | GraphProduct | neo4j | had primary source | Neo4j Dump of KG-Monarch Edges |
| kg-monarch.graph.neo4j.nodes | Neo4j Dump of KG-Monarch Nodes | monarch-kg_nodes.neo4j.csv (333.4 MB) | GraphProduct | neo4j | had primary source | Neo4j Dump of KG-Monarch Nodes |
| genecards.protein.interactions ⚠ | GeneCards Protein Interactions | www.genecards.org | Product | http | had primary source | Protein interaction data aggregated f... |
| irefindex.database | iRefIndex Database | ❔ | Product | psi_mi_mitab | had primary source | Historical consolidated protein inter... |
| unibiomap.links | UniBioMap Graph Links | unibiomap.links.csv (1.3 GB) | GraphProduct | csv | had primary source | Core UniBioMap graph edges file. |
| unibiomap.auxs | UniBioMap Graph Auxiliaries | unibiomap.auxs.tsv (563.9 MB) | GraphProduct | tsv | had primary source | Auxiliary UniBioMap graph annotations... |
| unibiomap.pred | UniBioMap Predicted Graph | unibiomap.pred.csv (2.3 GB) | GraphProduct | csv | had primary source | Predicted UniBioMap graph edges with ... |
| unibiomap.pred.full | UniBioMap Predicted Graph (Full) | unibiomap.pred.full.csv (5.9 GB) | GraphProduct | csv | had primary source | Full unfiltered UniBioMap predicted g... |
| string.protein.links | STRING Protein Links | protein.links.v12.0.txt.gz (128.7 GB) | GraphProduct | txt | had primary source | protein network data (full network, s... |
| string.protein.links.detailed | STRING Protein Links Detailed | protein.links.detailed.v12.0.txt.gz (189.6 GB) | GraphProduct | txt | had primary source | protein network data (full network, i... |
| string.protein.links.full | STRING Protein Links Full | protein.links.full.v12.0.txt.gz (199.6 GB) | GraphProduct | txt | had primary source | protein network data (full network, i... |
| string.protein.physical.links | STRING Protein Physical Links | protein.physical.links.v12.0.txt.gz (11.1 GB) | GraphProduct | txt | had primary source | protein network data (physical subnet... |
| string.protein.physical.links.detailed | STRING Protein Physical Links Detailed | protein.physical.links.detailed.v12.0.txt.gz (13.8 GB) | GraphProduct | txt | had primary source | protein network data (physical subnet... |
| string.protein.physical.links.full | STRING Protein Physical Links Full | protein.physical.links.full.v12.0.txt.gz (14.5 GB) | GraphProduct | txt | had primary source | protein network data (physical subnet... |
| string.cog.links | STRING COG Links | COG.links.v12.0.txt.gz (176.8 MB) | GraphProduct | txt | had primary source | association scores between orthologou... |
| string.cog.links.detailed | STRING COG Links Detailed | COG.links.detailed.v12.0.txt.gz (238.7 MB) | GraphProduct | txt | had primary source | association scores (incl. subscores p... |
| string.database | STRING Database Network Schema | network_schema.v12.0.sql.gz (262.2 GB) | GraphProduct | ❔ | had primary source | full database, part II: the networks ... |
BioGRID (Biological General Repository for Interaction Datasets) is an open, curated repository of genetic, protein, and chemical interaction data, PTMs, CRISPR screen results (ORCS), and themed biological curation projects across multiple species including human, budding yeast (S. cerevisiae), fission yeast (S. pombe), and Arabidopsis (A. thaliana). Monthly releases (e.g., 4.4.248) incorporate newly curated interactions and annotations. Data are available via a REST API and downloadable archives in multiple formats (MITAB, PSI-XML, TAB, project-specific subsets, PTM sites). All data are freely reusable under the MIT License with required citation of contributing authors and BioGRID publications.
Created: August 13, 2025 | Last modified: December 22, 2025