is a Data Source.
It is part of the BER collection.
The Biological General Repository for Interaction Datasets (BioGRID) is an open, curated database of genetic, protein, and chemical interaction data, post-translational modifications (PTMs), CRISPR screen results (ORCS), and themed curation project datasets spanning model organisms and human, freely available under the MIT License.
biomedical, proteomics, genomics, systems biology
Unknown
infores:biogrid
Unknown
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| biogrid.web | BioGRID Website | thebiogrid.org | GraphicalInterface | http | Web interface for browsing, searching... |
| biogrid.api | BioGRID REST API | biogridrest | ProgrammingInterface | http | REST-based web service for programmat... |
| biogrid.interactions.mitab | BIOGRID-ALL-LATEST.mitab.zip | BIOGRID-ALL-LATEST.mitab.zip | GraphProduct | psi_mi_mitab | Latest complete BioGRID interaction d... |
| biogrid.interactions.tab3 | BIOGRID-ALL-LATEST.tab3.zip | BIOGRID-ALL-LATEST.tab3.zip | GraphProduct | tsv | Latest complete BioGRID interaction d... |
| biogrid.ptm | BIOGRID-PTMS-LATEST.ptm.zip | BIOGRID-PTMS-LATEST.ptm.zip | GraphProduct | tsv | Post-translational modification (PTM)... |
| biogrid.chemicals | BIOGRID-CHEMICALS-LATEST.chemtab.zip | BIOGRID-CHEMICALS-LATEST.chemtab.zip | GraphProduct | tsv | Protein-chemical interactions for the... |
| biogrid.identifiers | BIOGRID-IDENTIFIERS-LATEST.tab.zip | BIOGRID-IDENTIFIERS-LATEST.tab.zip | MappingProduct | tsv | A single delimited text file format c... |
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| kg-monarch.graph | KGX Distribution of KG-Monarch | monarch-kg.tar.gz (220.2 MB) | GraphProduct | kgx | KGX Distribution of KG-Monarch |
| kg-monarch.graph.jsonl | KGX JSON-L Distribution of KG-Monarch | monarch-kg.jsonl.tar.gz (301.0 MB) | GraphProduct | kgx-jsonl | KGX JSON-Lines Distribution of KG-Mon... |
| kg-monarch.graph.rdf | RDF Distribution of KG-Monarch | monarch-kg.nt.gz (838.5 MB) | GraphProduct | rdfxml | RDF Distribution of KG-Monarch |
| kg-monarch.graph.neo4j | Neo4j Dump of KG-Monarch | monarch-kg.neo4j.dump (1.3 GB) | GraphProduct | ❔ | Neo4j Dump of KG-Monarch |
| kg-monarch.graph.duckdb | DuckDB database of KG-Monarch | monarch-kg.duckdb (6.4 GB) | GraphProduct | ❔ | DuckDB database of KG-Monarch |
| kg-monarch.graph.jsonl.edges | KGX JSON-L Distribution of KG-Monarch Edges | monarch-kg_edges.jsonl (14.2 GB) | GraphProduct | kgx-jsonl | KGX JSON-Lines Distribution of KG-Mon... |
| kg-monarch.graph.jsonl.nodes | KGX JSON-L Distribution of KG-Monarch Nodes | monarch-kg_nodes.jsonl (1.1 GB) | GraphProduct | kgx-jsonl | KGX JSON-Lines Distribution of KG-Mon... |
| kg-monarch.graph.neo4j.edges | Neo4j Dump of KG-Monarch Edges | monarch-kg_edges.neo4j.csv (4.1 GB) | GraphProduct | neo4j | Neo4j Dump of KG-Monarch Edges |
| kg-monarch.graph.neo4j.nodes | Neo4j Dump of KG-Monarch Nodes | monarch-kg_nodes.neo4j.csv (333.4 MB) | GraphProduct | neo4j | Neo4j Dump of KG-Monarch Nodes |
| genecards.protein.interactions ⚠ | GeneCards Protein Interactions | www.genecards.org | Product | http | Protein interaction data aggregated f... |
| irefindex.database | iRefIndex Database | ❔ | Product | psi_mi_mitab | Historical consolidated protein inter... |
| unibiomap.links | UniBioMap Graph Links | unibiomap.links.csv (1.3 GB) | GraphProduct | csv | Core UniBioMap graph edges file. |
| unibiomap.auxs | UniBioMap Graph Auxiliaries | unibiomap.auxs.tsv (563.9 MB) | GraphProduct | tsv | Auxiliary UniBioMap graph annotations... |
| unibiomap.pred | UniBioMap Predicted Graph | unibiomap.pred.csv (2.3 GB) | GraphProduct | csv | Predicted UniBioMap graph edges with ... |
| unibiomap.pred.full | UniBioMap Predicted Graph (Full) | unibiomap.pred.full.csv (5.9 GB) | GraphProduct | csv | Full unfiltered UniBioMap predicted g... |
| string.protein.links | STRING Protein Links | protein.links.v12.0.txt.gz (128.7 GB) | GraphProduct | txt | protein network data (full network, s... |
| string.protein.links.detailed | STRING Protein Links Detailed | protein.links.detailed.v12.0.txt.gz (189.6 GB) | GraphProduct | txt | protein network data (full network, i... |
| string.protein.links.full | STRING Protein Links Full | protein.links.full.v12.0.txt.gz (199.6 GB) | GraphProduct | txt | protein network data (full network, i... |
| string.protein.physical.links | STRING Protein Physical Links | protein.physical.links.v12.0.txt.gz (11.1 GB) | GraphProduct | txt | protein network data (physical subnet... |
| string.protein.physical.links.detailed | STRING Protein Physical Links Detailed | protein.physical.links.detailed.v12.0.txt.gz (13.8 GB) | GraphProduct | txt | protein network data (physical subnet... |
| string.protein.physical.links.full | STRING Protein Physical Links Full | protein.physical.links.full.v12.0.txt.gz (14.5 GB) | GraphProduct | txt | protein network data (physical subnet... |
| string.cog.links | STRING COG Links | COG.links.v12.0.txt.gz (176.8 MB) | GraphProduct | txt | association scores between orthologou... |
| string.cog.links.detailed | STRING COG Links Detailed | COG.links.detailed.v12.0.txt.gz (238.7 MB) | GraphProduct | txt | association scores (incl. subscores p... |
| string.database | STRING Database Network Schema | network_schema.v12.0.sql.gz (262.2 GB) | GraphProduct | ❔ | full database, part II: the networks ... |
BioGRID (Biological General Repository for Interaction Datasets) is an open, curated repository of genetic, protein, and chemical interaction data, PTMs, CRISPR screen results (ORCS), and themed biological curation projects across multiple species including human, budding yeast (S. cerevisiae), fission yeast (S. pombe), and Arabidopsis (A. thaliana). Monthly releases (e.g., 4.4.248) incorporate newly curated interactions and annotations. Data are available via a REST API and downloadable archives in multiple formats (MITAB, PSI-XML, TAB, project-specific subsets, PTM sites). All data are freely reusable under the MIT License with required citation of contributing authors and BioGRID publications.
Created: August 13, 2025 | Last modified: December 22, 2025