is a Data Source.
It is part of the BER collection.
The Biological General Repository for Interaction Datasets (BioGRID) is an open, curated database of genetic, protein, and chemical interaction data, post-translational modifications (PTMs), CRISPR screen results (ORCS), and themed curation project datasets spanning model organisms and human, freely available under the MIT License.
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infores:biogrid
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| biogrid.web | BioGRID Website | thebiogrid.org | Graphical Interface | http | Web interface for browsing, searching... |
| biogrid.api | BioGRID REST API | biogridrest | Programming Interface | http | REST-based web service for programmat... |
| biogrid.interactions.mitab | BIOGRID-ALL-LATEST.mitab.zip | BIOGRID-ALL-LATEST.mitab.zip | Graph | psi_mi_mitab | Latest complete BioGRID interaction d... |
| biogrid.interactions.tab3 | BIOGRID-ALL-LATEST.tab3.zip | BIOGRID-ALL-LATEST.tab3.zip | Graph | tsv | Latest complete BioGRID interaction d... |
| biogrid.ptm | BIOGRID-PTMS-LATEST.ptm.zip | BIOGRID-PTMS-LATEST.ptm.zip | Graph | tsv | Post-translational modification (PTM)... |
| biogrid.chemicals | BIOGRID-CHEMICALS-LATEST.chemtab.zip | BIOGRID-CHEMICALS-LATEST.chemtab.zip | Graph | tsv | Protein-chemical interactions for the... |
| biogrid.identifiers | BIOGRID-IDENTIFIERS-LATEST.tab.zip | BIOGRID-IDENTIFIERS-LATEST.tab.zip | Mapping | tsv | A single delimited text file format c... |
| biogrid.ptms-latest | BioGRID Latest PTM Download | BIOGRID-PTMS-LATEST.ptm.zip (56.5 MB) | Product | tsv | BioGRID latest post-translational mod... |
| ID | Name | URL | Category | Format | Relation | Description |
|---|---|---|---|---|---|---|
| kg-monarch.graph | KGX Distribution of KG-Monarch | monarch-kg.tar.gz (220.2 MB) | Graph | kgx | had primary source | KGX Distribution of KG-Monarch |
| kg-monarch.graph.jsonl | KGX JSON-L Distribution of KG-Monarch | monarch-kg.jsonl.tar.gz (301.0 MB) | Graph | kgx-jsonl | had primary source | KGX JSON-Lines Distribution of KG-Mon... |
| kg-monarch.graph.rdf | RDF Distribution of KG-Monarch | monarch-kg.nt.gz (838.5 MB) | Graph | rdfxml | had primary source | RDF Distribution of KG-Monarch |
| kg-monarch.graph.neo4j | Neo4j Dump of KG-Monarch | monarch-kg.neo4j.dump (1.3 GB) | Graph | neo4j | had primary source | Neo4j Dump of KG-Monarch |
| kg-monarch.graph.duckdb | DuckDB database of KG-Monarch | monarch-kg.duckdb (6.4 GB) | Graph | mixed | had primary source | DuckDB database of KG-Monarch |
| kg-monarch.graph.jsonl.edges | KGX JSON-L Distribution of KG-Monarch Edges | monarch-kg.jsonl.tar.gz (465.3 MB) | Graph | kgx-jsonl | had primary source | KGX JSON-Lines Distribution of KG-Mon... |
| kg-monarch.graph.jsonl.nodes | KGX JSON-L Distribution of KG-Monarch Nodes | monarch-kg.jsonl.tar.gz (465.3 MB) | Graph | kgx-jsonl | had primary source | KGX JSON-Lines Distribution of KG-Mon... |
| kg-monarch.graph.neo4j.edges | Neo4j Dump of KG-Monarch Edges | monarch-kg_edges.neo4j.csv (4.1 GB) | Graph | neo4j | had primary source | Neo4j Dump of KG-Monarch Edges |
| kg-monarch.graph.neo4j.nodes | Neo4j Dump of KG-Monarch Nodes | monarch-kg_nodes.neo4j.csv (333.4 MB) | Graph | neo4j | had primary source | Neo4j Dump of KG-Monarch Nodes |
| genecards.protein.interactions ⚠ | GeneCards Protein Interactions | www.genecards.org | Product | http | had primary source | Protein interaction data aggregated f... |
| irefindex.database | iRefIndex Database | ❔ | Product | psi_mi_mitab | had primary source | Historical consolidated protein inter... |
| unibiomap.links | UniBioMap Graph Links | unibiomap.links.csv (1.3 GB) | Graph | csv | had primary source | Core UniBioMap graph edges file. |
| unibiomap.auxs | UniBioMap Graph Auxiliaries | unibiomap.auxs.tsv (563.9 MB) | Graph | tsv | had primary source | Auxiliary UniBioMap graph annotations... |
| unibiomap.pred | UniBioMap Predicted Graph | unibiomap.pred.csv (2.3 GB) | Graph | csv | had primary source | Predicted UniBioMap graph edges with ... |
| unibiomap.pred.full | UniBioMap Predicted Graph (Full) | unibiomap.pred.full.csv (5.9 GB) | Graph | csv | had primary source | Full unfiltered UniBioMap predicted g... |
| string.protein.links | STRING Protein Links | protein.links.v12.0.txt.gz (128.7 GB) | Graph | txt | had primary source | protein network data (full network, s... |
| string.protein.links.detailed | STRING Protein Links Detailed | protein.links.detailed.v12.0.txt.gz (189.6 GB) | Graph | txt | had primary source | protein network data (full network, i... |
| string.protein.links.full | STRING Protein Links Full | protein.links.full.v12.0.txt.gz (199.6 GB) | Graph | txt | had primary source | protein network data (full network, i... |
| string.protein.physical.links | STRING Protein Physical Links | protein.physical.links.v12.0.txt.gz (11.1 GB) | Graph | txt | had primary source | protein network data (physical subnet... |
| string.protein.physical.links.detailed | STRING Protein Physical Links Detailed | protein.physical.links.detailed.v12.0.txt.gz (13.8 GB) | Graph | txt | had primary source | protein network data (physical subnet... |
| string.protein.physical.links.full | STRING Protein Physical Links Full | protein.physical.links.full.v12.0.txt.gz (14.5 GB) | Graph | txt | had primary source | protein network data (physical subnet... |
| string.cog.links | STRING COG Links | COG.links.v12.0.txt.gz (176.8 MB) | Graph | txt | had primary source | association scores between orthologou... |
| string.cog.links.detailed | STRING COG Links Detailed | COG.links.detailed.v12.0.txt.gz (238.7 MB) | Graph | txt | had primary source | association scores (incl. subscores p... |
| string.database | STRING Database Network Schema | network_schema.v12.0.sql.gz (262.2 GB) | Graph | postgres | had primary source | full database, part II: the networks ... |
| pharmebinet.json | PharMeBINet JSON Release | content (1.8 GB) | Graph | json | was derived from | PharMeBINet V2 JSON release published... |
| pharmebinet.tsv | PharMeBINet TSV Release | content (1.8 GB) | Graph | tsv | was derived from | PharMeBINet V2 TSV release published ... |
| pharmebinet.graphml | PharMeBINet GraphML Release | content (1.9 GB) | Graph | mixed | was derived from | PharMeBINet V2 GraphML release publis... |
| pharmebinet.neo4j | PharMeBINet Neo4j Database | content (3.6 GB) | Graph | neo4j | was derived from | PharMeBINet V2 Neo4j database release... |
| pharmebinet.neo4j.dump | PharMeBINet Neo4j Dump | content (3.4 GB) | Graph | neo4j | was derived from | PharMeBINet V2 Neo4j dump release pub... |
| epsd.download | EPSD Data Download | Download.php | Product | http | was derived from | Download page for complete phosphoryl... |
| genemania.networks | GeneMANIA Interaction Network Archive | current | Graph | txt | was derived from | Downloadable GeneMANIA interaction ne... |
| hippie.current.tab | HIPPIE Current TAB Dataset | hippie_current.txt (132.3 MB) | Product | tsv | was derived from | Current HIPPIE v2.4 interaction datas... |
| hippie.current.mitab | HIPPIE Current PSI-MI TAB Dataset | HIPPIE-current.mitab.txt (245.1 MB) | Product | psi_mi_mitab | was derived from | Current HIPPIE v2.4 interaction datas... |
| hpidb.mitab ⚠ | HPIDB PSI-MITAB Dataset | hpidb.igbb.msstate.edu | Product | psi_mi_mitab | was derived from | Downloadable HPIDB host-pathogen inte... |
| humannet.network | HumanNet Network File | HumanNet-XC.tsv.gz (11.7 MB) | Graph | tsv | was derived from | HumanNet-XC v3 functional gene networ... |
| humannet.network.symbol | HumanNet Network File (Gene Symbols) | HumanNet-XC.symbol.tsv.gz (13.3 MB) | Graph | tsv | was derived from | HumanNet-XC v3 functional gene networ... |
| iid.human_annotated_ppis | IID Human Annotated PPIs | human_annotated_PPIs.txt.gz (144.0 MB) | Graph | tsv | was derived from | IID annotated human protein-protein i... |
| iid.mouse_annotated_ppis | IID Mouse Annotated PPIs | mouse_annotated_PPIs.txt.gz (38.2 MB) | Graph | tsv | was derived from | IID annotated mouse protein-protein i... |
| pathwaycommons.biopax | Integrated BioPAX Model | pc-biopax.owl.gz (1.6 GB) | Product | biopax | was derived from | PC v14 integrated BioPAX Level 3 unif... |
| pathwaycommons.downloads | Pathway Commons Data Downloads | v14 | Product | mixed | was derived from | Download directory for Pathway Common... |
| pathwaycommons.sif | SIF Network Format | pc-hgnc.sif.gz (9.4 MB) | Product | sif | was derived from | PC v14 Simple Interaction Format netw... |
| pathwaycommons.gmt | GMT Gene Set Format | pc-hgnc.gmt.gz (256.4 KB) | Product | tsv | was derived from | PC v14 Gene Matrix Transposed gene se... |
| pathwaycommons.txt | Extended SIF TXT Format | pc-hgnc.txt.gz (110.3 MB) | Product | txt | was derived from | PC v14 tab-delimited extended SIF nod... |
| phosphogrid.portal | PhosphoGRID Web Portal | phosphogrid.org | Graphical Interface | http | was informed by | Legacy PhosphoGRID web portal for sea... |
| biobtree.api | BioBTree REST API | api | Programming Interface | http | had primary source | REST API for searching identifiers an... |
| genecards.web.interface | GeneCards Web Interface | www.genecards.org | Graphical Interface | http | had primary source | Web-based interface for searching and... |
| biobtree.graph.human-subgraph | BioBTree Knowledge Graph - Human Subgraph (KGX) | 20816742 | Graph | kgx | had primary source | Human-scoped, Neo4j-ready subgraph of... |
| kg-alzheimers.graph ⚠ | KGX Distribution of KG-Alzheimers | kg-alzheimers.tar.gz (201.1 MB) | Graph | kgx | had primary source | KGX Distribution of KG-Alzheimers |
| sri-reference-kg.graph | SRI-Reference KG (KGX distribution) | monarch-kg.tar.gz (219.4 MB) | Graph | kgx | had primary source | KGX distribution of the SRI-Reference KG |
| multiomics-kp.graph | Multiomics KP Knowledge Graph | metadata | Graph | json | was influenced by | Live TRAPI/BioThings metadata endpoin... |
BioGRID (Biological General Repository for Interaction Datasets) is an open, curated repository of genetic, protein, and chemical interaction data, PTMs, CRISPR screen results (ORCS), and themed biological curation projects across multiple species including human, budding yeast (S. cerevisiae), fission yeast (S. pombe), and Arabidopsis (A. thaliana). Monthly releases (e.g., 4.4.248) incorporate newly curated interactions and annotations. Data are available via a REST API and downloadable archives in multiple formats (MITAB, PSI-XML, TAB, project-specific subsets, PTM sites). All data are freely reusable under the MIT License with required citation of contributing authors and BioGRID publications.
Created: August 13, 2025 | Last modified: September 23, 2026