is a Ontology.
It is part of the OBO Foundry collection.
A structured classification of molecular entities of biological interest focusing on 'small' chemical compounds.
chemistry and biochemistry
infores:chebi
Unknown
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| chebi.owl | chebi.owl | chebi.owl | OntologyProduct | owl | Chemical Entities of Biological Inter... |
| chebi.obo | chebi.obo | chebi.obo | OntologyProduct | obo | Chemical Entities of Biological Inter... |
| chebi.json | chebi.json | chebi.json (483.0 MB) | OntologyProduct | json | Chemical Entities of Biological Inter... |
| chebi.owl.gz | chebi, compressed owl | chebi.owl.gz (60.0 MB) | OntologyProduct | owl | chebi, compressed owl |
| chebi.chebi_lite.obo | chebi_lite, no syns or xrefs | chebi_lite.obo | OntologyProduct | obo | chebi_lite, no syns or xrefs |
| chebi.chebi_core.obo | chebi_core, no xrefs | chebi_core.obo | OntologyProduct | obo | chebi_core, no xrefs |
| ID | Name | URL | Category | Format | Relation | Description |
|---|---|---|---|---|---|---|
| ubkg.neo4j | UBKG Neo4j Docker Distribution | ubkg-downloads.xconsortia.org | GraphProduct | ❔ | had primary source | Turnkey neo4j distributions that depl... |
| ubkg.csv | UBKG Ontology CSV Files | ubkg-downloads.xconsortia.org | GraphProduct | csv | had primary source | Ontology CSV files that can be import... |
| bioteque.embeddings | Bioteque Embeddings | embeddings | Product | ❔ | had primary source | Network embeddings of the Bioteque gr... |
| kg-microbe.graph.raw | KG-Microbe KGX Graph - Raw | KGMicrobe-raw-20250222.tar.gz (11.6 GB) | GraphProduct | kgx | had primary source | Raw source files for all KG-Microbe f... |
| kg-microbe.graph.core | KG-Microbe KGX Graph - Core | latest | GraphProduct | kgx | had primary source | The core KG KG-Microbe-Core with onto... |
| kg-microbe.graph.biomedical | KG-Microbe KGX Graph - Biomedical | latest | GraphProduct | kgx | had primary source | Core plus human biomedical data (onto... |
| kg-microbe.graph.function | KG-Microbe KGX Graph - Function | KGMicrobe-function-20250222.tar.gz (4.3 GB) | GraphProduct | kgx | had primary source | Core plus Uniprot genome annotations |
| kg-microbe.graph.biomedical-function | KG-Microbe KGX Graph - Biomedical-Function | KGMicrobe-biomedical-function-20250222.tar.gz (4.3 GB) | GraphProduct | kgx | had primary source | Biomedical plus Uniprot genome annota... |
| unibiomap.links | UniBioMap Graph Links | unibiomap.links.csv (1.3 GB) | GraphProduct | csv | had primary source | Core UniBioMap graph edges file. |
| unibiomap.auxs | UniBioMap Graph Auxiliaries | unibiomap.auxs.tsv (563.9 MB) | GraphProduct | tsv | had primary source | Auxiliary UniBioMap graph annotations... |
| unibiomap.pred | UniBioMap Predicted Graph | unibiomap.pred.csv (2.3 GB) | GraphProduct | csv | had primary source | Predicted UniBioMap graph edges with ... |
| unibiomap.pred.full | UniBioMap Predicted Graph (Full) | unibiomap.pred.full.csv (5.9 GB) | GraphProduct | csv | had primary source | Full unfiltered UniBioMap predicted g... |
| ibkh.graph | iBKH Knowledge Graph | ❔ | GraphProduct | ❔ | had primary source | The integrative Biomedical Knowledge ... |
| obo-db-ingest.bigg.metabolite.sssom.tsv | bigg.metabolite SSSOM | bigg.metabolite.sssom.tsv (391.1 KB) | MappingProduct | sssom | had primary source | bigg.metabolite SSSOM |
| mechreponet.kg | MechRepoNet Knowledge Graph | publication | ❔ | had primary source | The MechRepoNet knowledge graph in it... | |
| microbiomekg.api | MicrobiomeKG Plover API | mbkp | ProgrammingInterface | http | had primary source | TRAPI web API for querying MicrobiomeKG |
| pheknowlator.graph | PheKnowLator graph | knowledge_graphs?pageState=(%22StorageObjectListTable%22:(%22f%22:%22%255B%255D%22))&inv=1&invt=Ab5_1Q&project=pheknowlator | GraphProduct | owl | had primary source | PheKnowLator graph files, including s... |
| rtx-kg2.graph.nodes | RTX-KG2.10.1c KGX JSONL Nodes | kg2c-2.10.1-v1.0-nodes.jsonl.gz (359.1 MB) | GraphProduct | kgx-jsonl | had primary source | Nodes for KGX distribution of the RTX... |
| rtx-kg2.graph.edges | RTX-KG2.10.1c KGX JSONL Edges | kg2c-2.10.1-v1.0-edges.jsonl.gz (1.7 GB) | GraphProduct | kgx-jsonl | had primary source | Edges for KGX distribution of the RTX... |
| rtx-kg2.neo4j | RTX-KG2 Neo4j | arax.ncats.io | ProgrammingInterface | ❔ | had primary source | Neo4j distribution of the RTX-KG2 as ... |
| icees-kg.graph | KGX distribution of the ICEES Exposures KP | 1.5.0 | GraphProduct | kgx-jsonl | had primary source | KGX distribution of the ICEES Exposur... |
| icees-kg.trapi | ICEES KG TRAPI API | icees-kg-trapi | ProgrammingInterface | http | had primary source | Translator Reasoner API (TRAPI) endpo... |
| icees-kg.metadata | ICEES KG Metadata | metadata-metadata-get-icees-kg | Product | json | had primary source | Meta knowledge graph and metadata des... |
| forum.graph.dump ⚠ | FORUM Knowledge Graph Dump | share.tar.gz | GraphProduct | ❔ | had primary source | Downloadable knowledge graph dump in ... |
| rna-kg.kg.neo4j | RNA-KG Neo4j Dump | rnakgv20.dump (3.7 GB) | GraphProduct | neo4j | had primary source | RNA-KG as a Neo4j Dump |
| rna-kg.kg.nodes | RNA-KG Nodes | nodes.csv (4.1 GB) | GraphProduct | csv | had primary source | RNA-KG Nodes in CSV format |
| rna-kg.kg.edges | RNA-KG Edges | edges.csv (17.1 GB) | GraphProduct | csv | had primary source | RNA-KG Edges in CSV format |
| efo.owl | EFO OWL | efo.owl (229.5 MB) | OntologyProduct | owl | had primary source | The latest release of EFO in OWL format |
| efo.obo | EFO OBO | efo.obo (61.1 MB) | OntologyProduct | obo | had primary source | The latest release of EFO in OBO format |
| drug-approvals-kp.graph.nodes | Drug Approvals KP Graph Nodes | drug_approvals_kg_nodes_v0.3.9.tsv (685.0 KB) | GraphProduct | kgx | had primary source | Nodes for the Drug Approvals KP, v0.3.9 |
| drug-approvals-kp.graph.edges | Drug Approvals KP Graph Edges | drug_approvals_kg_edges_v0.3.9.tsv (29.6 MB) | GraphProduct | kgx | had primary source | Edges for the Drug Approvals KP, v0.3.9 |
| drugmechdb.graph | DrugMechDB Graph Dataset | zenodo.8139357 | GraphProduct | mixed | had primary source | Curated mechanistic drug–disease path... |
| orkg.dump | ORKG RDF Dump | dump (613.1 MB) | GraphProduct | ntriples | had primary source | RDF dump of the Open Research Knowled... |
A structured classification of molecular entities of biological interest focusing on ‘small’ chemical compounds.
Chemical Entities of Biological Interest in OWL format
URL: http://purl.obolibrary.org/obo/chebi.owl
Format: owl
Chemical Entities of Biological Interest in OBO format
URL: http://purl.obolibrary.org/obo/chebi.obo
Format: obo
Chemical Entities of Biological Interest in JSON format
URL: http://purl.obolibrary.org/obo/chebi.json
Format: json
chebi, compressed owl
URL: http://purl.obolibrary.org/obo/chebi.owl.gz
Format: owl
chebi_lite, no syns or xrefs
URL: http://purl.obolibrary.org/obo/chebi/chebi_lite.obo
Format: obo
chebi_core, no xrefs
URL: http://purl.obolibrary.org/obo/chebi/chebi_core.obo
Format: obo
Domains: chemistry and biochemistry
This resource was automatically synchronized from the OBO Foundry registry.
Created: March 18, 2025 | Last modified: April 15, 2026