is an Aggregator.
DISEASES is a weekly updated database that integrates evidence on disease-gene associations from automatic text mining, manually curated literature, cancer mutation data, and genome-wide association studies. It provides confidence scores to facilitate comparison of different types and sources of evidence.
health, genomics, biomedical, literature
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infores:diseases
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| diseases.portal | DISEASES Web Search | diseases.jensenlab.org | GraphicalInterface | http | Web search interface for querying hum... |
| diseases.textmining-full | Text Mining Channel (Full) | human_disease_textmining_full.tsv (1.8 GB) | Product | tsv | Disease-gene associations from text m... |
| diseases.textmining-filtered | Text Mining Channel (Filtered) | human_disease_textmining_filtered.tsv (46.4 MB) | Product | tsv | Disease-gene associations from text m... |
| diseases.knowledge-full | Knowledge Channel (Full) | human_disease_knowledge_full.tsv (6.6 MB) | Product | tsv | Disease-gene associations from manual... |
| diseases.knowledge-filtered | Knowledge Channel (Filtered) | human_disease_knowledge_filtered.tsv (588.0 KB) | Product | tsv | Disease-gene associations from manual... |
| diseases.experiments-full | Experiments Channel (Full) | human_disease_experiments_full.tsv (25.7 MB) | Product | tsv | Disease-gene associations from experi... |
| diseases.experiments-filtered | Experiments Channel (Filtered) | human_disease_experiments_filtered.tsv (2.4 MB) | Product | tsv | Disease-gene associations from experi... |
| diseases.integrated-full | Integrated Channel (Full) | human_disease_integrated_full.tsv (618.3 MB) | Product | tsv | Experimental integrated channel combi... |
| diseases.dictionary | DISEASES Dictionary | diseases_dictionary.tar.gz (15.2 MB) | Product | ❔ | Dictionary of human gene and disease ... |
| amyco.annotations | AmyCo Curated Annotations | ❔ | Product | ❔ | Manually curated disease-gene associa... |
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| clinicalkg.graph | CKG Graph Dump | 1 | GraphProduct | mixed | Neo4j database dump of the Clinical K... |
| cancer-genome-interpreter.clinicalkg.graph | CKG Graph Dump | 1 | GraphProduct | mixed | Neo4j database dump of the Clinical K... |
| spoke.graph | SPOKE Graph | ❔ | GraphProduct | ❔ | The SPOKE knowledge graph containing ... |
| translator.diseases.graph | Translator DISEASES KGX Graph | 2025_12_15 | GraphProduct | kgx | KGX graph package for DISEASES text-m... |
| string.protein.links | STRING Protein Links | protein.links.v12.0.txt.gz (128.7 GB) | GraphProduct | txt | protein network data (full network, s... |
| string.protein.links.detailed | STRING Protein Links Detailed | protein.links.detailed.v12.0.txt.gz (189.6 GB) | GraphProduct | txt | protein network data (full network, i... |
| string.protein.links.full | STRING Protein Links Full | protein.links.full.v12.0.txt.gz (199.6 GB) | GraphProduct | txt | protein network data (full network, i... |
| string.protein.physical.links | STRING Protein Physical Links | protein.physical.links.v12.0.txt.gz (11.1 GB) | GraphProduct | txt | protein network data (physical subnet... |
| string.protein.physical.links.detailed | STRING Protein Physical Links Detailed | protein.physical.links.detailed.v12.0.txt.gz (13.8 GB) | GraphProduct | txt | protein network data (physical subnet... |
| string.protein.physical.links.full | STRING Protein Physical Links Full | protein.physical.links.full.v12.0.txt.gz (14.5 GB) | GraphProduct | txt | protein network data (physical subnet... |
| string.cog.links | STRING COG Links | COG.links.v12.0.txt.gz (176.8 MB) | GraphProduct | txt | association scores between orthologou... |
| string.cog.links.detailed | STRING COG Links Detailed | COG.links.detailed.v12.0.txt.gz (238.7 MB) | GraphProduct | txt | association scores (incl. subscores p... |
| string.database | STRING Database Network Schema | network_schema.v12.0.sql.gz (262.2 GB) | GraphProduct | ❔ | full database, part II: the networks ... |