is a General purpose Resource.
The Gene Ontology resource, the world’s largest source of information on the functions of genes. This knowledge is both human-readable and machine-readable, and is a foundation for computational analysis of large-scale molecular biology and genetics experiments in biomedical research.
biological systems
Unknown
Unknown
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| ncbigene.gene2go | Gene to GO Mapping | gene2go.gz (1.1 GB) | MappingProduct | tsv | Gene to Gene Ontology mapping data pr... |
| clinicalkg.graph | CKG Graph Dump | ❔ | GraphProduct | mixed | Neo4j database dump of the Clinical K... |
| drugmechdb.graph | DrugMechDB Graph Dataset | zenodo.8139357 | GraphProduct | mixed | Curated mechanistic drug–disease path... |
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| obo-db-ingest.bigg.compartment.sssom.tsv | bigg.compartment SSSOM | bigg.compartment.sssom.tsv (242 B) | MappingProduct | sssom | bigg.compartment SSSOM |
| interpro.interpro2go | InterPro to GO Mappings | interpro2go (2.9 MB) | MappingProduct | tsv | Mappings between InterPro entries and... |
| spoke.graph | SPOKE Graph | ❔ | GraphProduct | ❔ | The SPOKE knowledge graph containing ... |
| rtx-kg2.graph.nodes | RTX-KG2.10.1c KGX JSONL Nodes | kg2c-2.10.1-v1.0-nodes.jsonl.gz (359.1 MB) | GraphProduct | kgx-jsonl | Nodes for KGX distribution of the RTX... |
| rtx-kg2.graph.edges | RTX-KG2.10.1c KGX JSONL Edges | kg2c-2.10.1-v1.0-edges.jsonl.gz (1.7 GB) | GraphProduct | kgx-jsonl | Edges for KGX distribution of the RTX... |
| rtx-kg2.neo4j | RTX-KG2 Neo4j | arax.ncats.io | ProgrammingInterface | ❔ | Neo4j distribution of the RTX-KG2 as ... |
| alzkb.browser | AlzKB Graph Database Browser | login | GraphicalInterface | http | A browser interface for a knowledge g... |
| alzkb.data | AlzKB Data Release (Version 2.0.0) | v2.0.0 | GraphProduct | ❔ | Memgraph data release for AlzKB. |
| efo.owl | EFO OWL | efo.owl (229.5 MB) | DataModelProduct | owl | The latest release of EFO in OWL format |
| efo.obo | EFO OBO | efo.obo (61.1 MB) | DataModelProduct | obo | The latest release of EFO in OBO format |
| bioteque.embeddings | Bioteque Embeddings | embeddings | Product | ❔ | Network embeddings of the Bioteque gr... |
| to.owl | Plant Trait Ontology OWL | to.owl (207.2 KB) | DataModelProduct | owl | The latest release of Plant Trait Ont... |
| to.obo | Plant Trait Ontology OBO | to.obo (154.7 KB) | DataModelProduct | obo | The latest release of Plant Trait Ont... |
| to-basic.obo | Plant Trait Ontology Basic OBO | to-basic.obo (109.4 KB) | DataModelProduct | obo | The Basic subset of the Plant Trait O... |
| mechreponet.kg | MechRepoNet Knowledge Graph | publication | ❔ | The MechRepoNet knowledge graph in it... | |
| indra.cogex.code | INDRA CoGEx Build Code | indra_cogex | ProcessProduct | ❔ | INDRA CoGEx is a graph database integ... |
| kg-monarch.graph | KGX Distribution of KG-Monarch | monarch-kg.tar.gz (220.2 MB) | GraphProduct | kgx | KGX Distribution of KG-Monarch |
| kg-monarch.graph.jsonl ⚠ | KGX JSON-L Distribution of KG-Monarch | monarch-kg.jsonl.tar.gz | GraphProduct | kgx-jsonl | KGX JSON-Lines Distribution of KG-Mon... |
| kg-monarch.graph.rdf | RDF Distribution of KG-Monarch | monarch-kg.nt.gz (838.5 MB) | GraphProduct | rdfxml | RDF Distribution of KG-Monarch |
| kg-monarch.graph.neo4j ⚠ | Neo4j Dump of KG-Monarch | monarch-kg.neo4j.dump | GraphProduct | ❔ | Neo4j Dump of KG-Monarch |
| kg-monarch.graph.duckdb ⚠ | DuckDB database of KG-Monarch | monarch-kg.duckdb.gz | GraphProduct | ❔ | DuckDB database of KG-Monarch |
| pheknowlator.graph | PheKnowLator graph | knowledge_graphs?pageState=(%22StorageObjectListTable%22:(%22f%22:%22%255B%255D%22))&inv=1&invt=Ab5_1Q&project=pheknowlator | GraphProduct | owl | PheKnowLator graph files, including s... |
| pw.owl | PW OWL | pw.owl (5.2 MB) | DataModelProduct | owl | PW OWL release |
| pw.obo | PW OBO | pw.obo (1.3 MB) | DataModelProduct | obo | PW OBO release |