is a Ontology.
It is part of the Obo-foundry collection.
An ontology for describing the function of genes and gene products
biological systems
Unknown
Unknown
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| go.owl | GO (OWL edition) | go.owl (121.7 MB) | OntologyProduct | owl | The main ontology in OWL. This is sel... |
| go.obo | GO (OBO Format edition) | go.obo (33.6 MB) | OntologyProduct | obo | Equivalent to go.owl, in obo format |
| go.json | GO (JSON edition) | go.json (74.1 MB) | OntologyProduct | json | Equivalent to go.owl, in obograph jso... |
| go.extensions.go-plus.owl | GO-Plus | go-plus.owl (224.8 MB) | OntologyProduct | owl | The main ontology plus axioms connect... |
| go.go-base.owl | GO Base Module | go-base.owl (153.5 MB) | OntologyProduct | owl | The main ontology plus axioms connect... |
| go.extensions.go-plus.json | GO-Plus | go-plus.json (125.5 MB) | OntologyProduct | json | As go-plus.owl, in obographs json format |
| go.go-basic.obo | GO-Basic, Filtered, for use with legacy tools | go-basic.obo (30.0 MB) | OntologyProduct | obo | Basic version of the GO, filtered suc... |
| go.go-basic.json | GO-Basic, Filtered, for use with legacy tools (JSON) | go-basic.json (64.2 MB) | OntologyProduct | json | As go-basic.obo, in json format |
| go.extensions.go-taxon-groupings.owl ⚠ | GO Taxon Groupings | go-taxon-groupings.owl | OntologyProduct | owl | Classes added to ncbitaxon for groupi... |
| go.snapshot.go.owl | GO (OWL edition), daily snapshot release | go.owl (121.5 MB) | OntologyProduct | owl | Equivalent to go.owl, but released da... |
| go.snapshot.go.obo | GO (OBO Format edition), daily snapshot release | go.obo (33.6 MB) | OntologyProduct | obo | Equivalent to go.owl, but released da... |
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| spoke.graph | SPOKE Graph | ❔ | GraphProduct | ❔ | The SPOKE knowledge graph containing ... |
| bioteque.embeddings | Bioteque Embeddings | embeddings | Product | ❔ | Network embeddings of the Bioteque gr... |
| clinicalkg.graph | CKG Graph Dump | 1 | GraphProduct | mixed | Neo4j database dump of the Clinical K... |
| kg-monarch.graph | KGX Distribution of KG-Monarch | monarch-kg.tar.gz (220.2 MB) | GraphProduct | kgx | KGX Distribution of KG-Monarch |
| kg-monarch.graph.jsonl | KGX JSON-L Distribution of KG-Monarch | monarch-kg.jsonl.tar.gz (301.0 MB) | GraphProduct | kgx-jsonl | KGX JSON-Lines Distribution of KG-Mon... |
| kg-monarch.graph.rdf | RDF Distribution of KG-Monarch | monarch-kg.nt.gz (838.5 MB) | GraphProduct | rdfxml | RDF Distribution of KG-Monarch |
| kg-monarch.graph.neo4j | Neo4j Dump of KG-Monarch | monarch-kg.neo4j.dump (1.3 GB) | GraphProduct | ❔ | Neo4j Dump of KG-Monarch |
| kg-monarch.graph.duckdb | DuckDB database of KG-Monarch | monarch-kg.duckdb (6.4 GB) | GraphProduct | ❔ | DuckDB database of KG-Monarch |
| pheknowlator.graph | PheKnowLator graph | knowledge_graphs?pageState=(%22StorageObjectListTable%22:(%22f%22:%22%255B%255D%22))&inv=1&invt=Ab5_1Q&project=pheknowlator | GraphProduct | owl | PheKnowLator graph files, including s... |
| kg-monarch.graph.jsonl.edges | KGX JSON-L Distribution of KG-Monarch Edges | monarch-kg_edges.jsonl (14.2 GB) | GraphProduct | kgx-jsonl | KGX JSON-Lines Distribution of KG-Mon... |
| kg-monarch.graph.jsonl.nodes | KGX JSON-L Distribution of KG-Monarch Nodes | monarch-kg_nodes.jsonl (1.1 GB) | GraphProduct | kgx-jsonl | KGX JSON-Lines Distribution of KG-Mon... |
| kg-monarch.graph.neo4j.edges | Neo4j Dump of KG-Monarch Edges | monarch-kg_edges.neo4j.csv (4.1 GB) | GraphProduct | neo4j | Neo4j Dump of KG-Monarch Edges |
| kg-monarch.graph.neo4j.nodes | Neo4j Dump of KG-Monarch Nodes | monarch-kg_nodes.neo4j.csv (333.4 MB) | GraphProduct | neo4j | Neo4j Dump of KG-Monarch Nodes |
| cancer-genome-interpreter.clinicalkg.graph | CKG Graph Dump | 1 | GraphProduct | mixed | Neo4j database dump of the Clinical K... |
| mechreponet.kg | MechRepoNet Knowledge Graph | publication | ❔ | The MechRepoNet knowledge graph in it... | |
| rna-kg.kg.neo4j | RNA-KG Neo4j Dump | rnakgv20.dump (3.7 GB) | GraphProduct | neo4j | RNA-KG as a Neo4j Dump |
| rna-kg.kg.nodes | RNA-KG Nodes | nodes.csv (4.1 GB) | GraphProduct | csv | RNA-KG Nodes in CSV format |
| rna-kg.kg.edges | RNA-KG Edges | edges.csv (17.1 GB) | GraphProduct | csv | RNA-KG Edges in CSV format |
| alzkb.browser | AlzKB Graph Database Browser | login | GraphicalInterface | http | A browser interface for a knowledge g... |
| alzkb.data | AlzKB Data Release (Version 2.0.0) | v2.0.0 | GraphProduct | ❔ | Memgraph data release for AlzKB. |
| rtx-kg2.graph.nodes | RTX-KG2.10.1c KGX JSONL Nodes | kg2c-2.10.1-v1.0-nodes.jsonl.gz (359.1 MB) | GraphProduct | kgx-jsonl | Nodes for KGX distribution of the RTX... |
| rtx-kg2.graph.edges | RTX-KG2.10.1c KGX JSONL Edges | kg2c-2.10.1-v1.0-edges.jsonl.gz (1.7 GB) | GraphProduct | kgx-jsonl | Edges for KGX distribution of the RTX... |
| rtx-kg2.neo4j | RTX-KG2 Neo4j | arax.ncats.io | ProgrammingInterface | ❔ | Neo4j distribution of the RTX-KG2 as ... |
| chr.model.owl | Monochrom Ontology OWL release | chr.owl (100.0 KB) | OntologyProduct | owl | OWL release of Monochrom Ontology |
| indra.cogex.code | INDRA CoGEx Build Code | indra_cogex | ProcessProduct | ❔ | INDRA CoGEx is a graph database integ... |
| ncbigene.gene2go | Gene to GO Mapping | gene2go.gz (1.1 GB) | MappingProduct | tsv | Gene to Gene Ontology mapping data pr... |
| microbiomekg.api | MicrobiomeKG Plover API | mbkp | ProgrammingInterface | http | TRAPI web API for querying MicrobiomeKG |
| drugmechdb.graph | DrugMechDB Graph Dataset | zenodo.8139357 | GraphProduct | mixed | Curated mechanistic drug–disease path... |
| obo-db-ingest.bigg.compartment.sssom.tsv | bigg.compartment SSSOM | bigg.compartment.sssom.tsv (242 B) | MappingProduct | sssom | bigg.compartment SSSOM |
| efo.owl | EFO OWL | efo.owl (229.5 MB) | OntologyProduct | owl | The latest release of EFO in OWL format |
| efo.obo | EFO OBO | efo.obo (61.1 MB) | OntologyProduct | obo | The latest release of EFO in OBO format |
| interpro.interpro2go | InterPro to GO Mappings | interpro2go (2.9 MB) | MappingProduct | tsv | Mappings between InterPro entries and... |
| to-basic.obo | Plant Trait Ontology Basic OBO | to-basic.obo (109.4 KB) | DataModelProduct | obo | The Basic subset of the Plant Trait O... |