is a Ontology.
It is part of the Obo-foundry collection.
The Human Phenotype Ontology (HPO) is a structured and controlled vocabulary for the phenotypic features encountered in human hereditary and other disease.
biological systems
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| hp.json | Official HPO release in obographs JSON format | hp.json (20.6 MB) | OntologyProduct | json | Simple, manually curated version of t... |
| hp.obo | Official HPO release in OBO format | hp.obo (9.7 MB) | OntologyProduct | obo | Simple, manually curated version of t... |
| hp.owl | Official HPO release in OWL | hp.owl (71.8 MB) | OntologyProduct | owl | Manually classified version of the on... |
| hp.hp-base.json | HPO base release in obographs JSON format | hp-base.json (20.8 MB) | OntologyProduct | obo | Manually curated version of the ontol... |
| hp.hp-base.obo | HPO base release in OBO format | hp-base.obo (10.2 MB) | OntologyProduct | obo | Manually curated version of the ontol... |
| hp.hp-base.owl | HPO base release in OWL format | hp-base.owl (45.3 MB) | OntologyProduct | owl | Manually curated version of the ontol... |
| hp.hp-full.json | HPO full release in obographs JSON format | hp-full.json (40.6 MB) | OntologyProduct | json | Version of the ontology automatically... |
| hp.hp-full.obo | HPO full release in OBO format | hp-full.obo (17.8 MB) | OntologyProduct | obo | Version of the ontology automatically... |
| hp.hp-full.owl | HPO full release in OWL format | hp-full.owl (80.5 MB) | OntologyProduct | owl | Version of the ontology automatically... |
| hp.hp-international.json | HPO International Edition in obographs JSON format | hp-international.json (46.5 MB) | OntologyProduct | json | Version of the ontology corresponding... |
| hp.hp-international.obo | HPO International Edition in OBO format | hp-international.obo (20.6 MB) | OntologyProduct | obo | Version of the ontology corresponding... |
| hp.hp-international.owl | HPO International Edition in OWL format | hp-international.owl (197.2 MB) | OntologyProduct | owl | Version of the ontology corresponding... |
| hp.hp-simple-non-classified.json | HPO simple, manually classified, without imports in obographs JSON format | hp-simple-non-classified.json (20.6 MB) | OntologyProduct | json | Simple, manually curated version of t... |
| hp.hp-simple-non-classified.obo | HPO simple, manually classified, without imports in OBO format | hp-simple-non-classified.obo (9.7 MB) | OntologyProduct | obo | Simple, manually curated version of t... |
| hp.hp-simple-non-classified.owl | HPO simple, manually classified, without imports in OWL format | hp-simple-non-classified.owl (27.7 MB) | OntologyProduct | owl | Simple, manually curated version of t... |
| hp.phenotype.hpoa | HPO Annotations (Phenotype to Disease) | phenotype.hpoa (32.2 MB) | OntologyProduct | tsv | https://hpo.jax.org/app/data/annotations |
| hp.phenotype_to_genes.txt | HPO phenotype to gene annotations | phenotype_to_genes.txt (71.3 MB) | OntologyProduct | tsv | https://hpo.jax.org/app/data/annotations |
| hp.genes_to_phenotype.txt | HPO gene to phenotype annotations | genes_to_phenotype.txt (23.0 MB) | OntologyProduct | tsv | https://hpo.jax.org/app/data/annotations |
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| ubkg.neo4j | UBKG Neo4j Docker Distribution | ubkg-downloads.xconsortia.org | GraphProduct | ❔ | Turnkey neo4j distributions that depl... |
| ubkg.csv | UBKG Ontology CSV Files | ubkg-downloads.xconsortia.org | GraphProduct | csv | Ontology CSV files that can be import... |
| clinicalkg.graph | CKG Graph Dump | 1 | GraphProduct | mixed | Neo4j database dump of the Clinical K... |
| kg-monarch.graph | KGX Distribution of KG-Monarch | monarch-kg.tar.gz (220.2 MB) | GraphProduct | kgx | KGX Distribution of KG-Monarch |
| kg-monarch.graph.jsonl | KGX JSON-L Distribution of KG-Monarch | monarch-kg.jsonl.tar.gz (301.0 MB) | GraphProduct | kgx-jsonl | KGX JSON-Lines Distribution of KG-Mon... |
| kg-monarch.graph.rdf | RDF Distribution of KG-Monarch | monarch-kg.nt.gz (838.5 MB) | GraphProduct | rdfxml | RDF Distribution of KG-Monarch |
| kg-monarch.graph.neo4j | Neo4j Dump of KG-Monarch | monarch-kg.neo4j.dump (1.3 GB) | GraphProduct | ❔ | Neo4j Dump of KG-Monarch |
| kg-monarch.graph.duckdb | DuckDB database of KG-Monarch | monarch-kg.duckdb (6.4 GB) | GraphProduct | ❔ | DuckDB database of KG-Monarch |
| pheknowlator.graph | PheKnowLator graph | knowledge_graphs?pageState=(%22StorageObjectListTable%22:(%22f%22:%22%255B%255D%22))&inv=1&invt=Ab5_1Q&project=pheknowlator | GraphProduct | owl | PheKnowLator graph files, including s... |
| kg-monarch.graph.jsonl.edges | KGX JSON-L Distribution of KG-Monarch Edges | monarch-kg_edges.jsonl (14.2 GB) | GraphProduct | kgx-jsonl | KGX JSON-Lines Distribution of KG-Mon... |
| kg-monarch.graph.jsonl.nodes | KGX JSON-L Distribution of KG-Monarch Nodes | monarch-kg_nodes.jsonl (1.1 GB) | GraphProduct | kgx-jsonl | KGX JSON-Lines Distribution of KG-Mon... |
| kg-monarch.graph.neo4j.edges | Neo4j Dump of KG-Monarch Edges | monarch-kg_edges.neo4j.csv (4.1 GB) | GraphProduct | neo4j | Neo4j Dump of KG-Monarch Edges |
| kg-monarch.graph.neo4j.nodes | Neo4j Dump of KG-Monarch Nodes | monarch-kg_nodes.neo4j.csv (333.4 MB) | GraphProduct | neo4j | Neo4j Dump of KG-Monarch Nodes |
| cancer-genome-interpreter.clinicalkg.graph | CKG Graph Dump | 1 | GraphProduct | mixed | Neo4j database dump of the Clinical K... |
| mechreponet.kg | MechRepoNet Knowledge Graph | publication | ❔ | The MechRepoNet knowledge graph in it... | |
| rna-kg.kg.neo4j | RNA-KG Neo4j Dump | rnakgv20.dump (3.7 GB) | GraphProduct | neo4j | RNA-KG as a Neo4j Dump |
| rna-kg.kg.nodes | RNA-KG Nodes | nodes.csv (4.1 GB) | GraphProduct | csv | RNA-KG Nodes in CSV format |
| rna-kg.kg.edges | RNA-KG Edges | edges.csv (17.1 GB) | GraphProduct | csv | RNA-KG Edges in CSV format |
| rtx-kg2.graph.nodes | RTX-KG2.10.1c KGX JSONL Nodes | kg2c-2.10.1-v1.0-nodes.jsonl.gz (359.1 MB) | GraphProduct | kgx-jsonl | Nodes for KGX distribution of the RTX... |
| rtx-kg2.graph.edges | RTX-KG2.10.1c KGX JSONL Edges | kg2c-2.10.1-v1.0-edges.jsonl.gz (1.7 GB) | GraphProduct | kgx-jsonl | Edges for KGX distribution of the RTX... |
| rtx-kg2.neo4j | RTX-KG2 Neo4j | arax.ncats.io | ProgrammingInterface | ❔ | Neo4j distribution of the RTX-KG2 as ... |
| indra.cogex.code | INDRA CoGEx Build Code | indra_cogex | ProcessProduct | ❔ | INDRA CoGEx is a graph database integ... |
| disgenet.data | DisGeNET Data | www.disgenet.com | GraphProduct | ❔ | DisGeNET data, including gene to dise... |
| drugmechdb.graph | DrugMechDB Graph Dataset | zenodo.8139357 | GraphProduct | mixed | Curated mechanistic drug–disease path... |
| drug-approvals-kp.graph.nodes | Drug Approvals KP Graph Nodes | drug_approvals_kg_nodes_v0.3.9.tsv (685.0 KB) | GraphProduct | kgx | Nodes for the Drug Approvals KP, v0.3.9 |
| drug-approvals-kp.graph.edges | Drug Approvals KP Graph Edges | drug_approvals_kg_edges_v0.3.9.tsv (29.6 MB) | GraphProduct | kgx | Edges for the Drug Approvals KP, v0.3.9 |
| efo.owl | EFO OWL | efo.owl (229.5 MB) | OntologyProduct | owl | The latest release of EFO in OWL format |
| efo.obo | EFO OBO | efo.obo (61.1 MB) | OntologyProduct | obo | The latest release of EFO in OBO format |
| mondo.sssom | MONDO SSSOM | mondo.sssom.tsv (1.4 MB) | MappingProduct | sssom | MONDO SSSOM. Mappings from MONDO iden... |