is a Ontology.
It is part of the OBO Foundry collection.
The Human Phenotype Ontology (HPO) is a structured and controlled vocabulary for the phenotypic features encountered in human hereditary and other disease.
infores:hpo
Unknown
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| hp.json | Official HPO release in obographs JSON format | hp.json (21.0 MB) | Ontology | json | Simple, manually curated version of t... |
| hp.obo | Official HPO release in OBO format | hp.obo (10.2 MB) | Ontology | obo | Simple, manually curated version of t... |
| hp.owl | Official HPO release in OWL | hp.owl (72.6 MB) | Ontology | owl | Manually classified version of the on... |
| hp.hp-base.json | HPO base release in obographs JSON format | hp-base.json (21.2 MB) | Ontology | obo | Manually curated version of the ontol... |
| hp.hp-base.obo | HPO base release in OBO format | hp-base.obo (10.7 MB) | Ontology | obo | Manually curated version of the ontol... |
| hp.hp-base.owl | HPO base release in OWL format | hp-base.owl (46.1 MB) | Ontology | owl | Manually curated version of the ontol... |
| hp.hp-full.json | HPO full release in obographs JSON format | hp-full.json (41.0 MB) | Ontology | json | Version of the ontology automatically... |
| hp.hp-full.obo | HPO full release in OBO format | hp-full.obo (18.3 MB) | Ontology | obo | Version of the ontology automatically... |
| hp.hp-full.owl | HPO full release in OWL format | hp-full.owl (81.3 MB) | Ontology | owl | Version of the ontology automatically... |
| hp.hp-international.json | HPO International Edition in obographs JSON format | hp-international.json (47.0 MB) | Ontology | json | Version of the ontology corresponding... |
| hp.hp-international.obo | HPO International Edition in OBO format | hp-international.obo (21.1 MB) | Ontology | obo | Version of the ontology corresponding... |
| hp.hp-international.owl | HPO International Edition in OWL format | hp-international.owl (198.7 MB) | Ontology | owl | Version of the ontology corresponding... |
| hp.hp-simple-non-classified.json | HPO simple, manually classified, without imports in obographs JSON format | hp-simple-non-classified.json (21.0 MB) | Ontology | json | Simple, manually curated version of t... |
| hp.hp-simple-non-classified.obo | HPO simple, manually classified, without imports in OBO format | hp-simple-non-classified.obo (10.2 MB) | Ontology | obo | Simple, manually curated version of t... |
| hp.hp-simple-non-classified.owl | HPO simple, manually classified, without imports in OWL format | hp-simple-non-classified.owl (28.5 MB) | Ontology | owl | Simple, manually curated version of t... |
| hp.phenotype.hpoa | HPO Annotations (Phenotype to Disease) | phenotype.hpoa (33.6 MB) | Ontology | tsv | https://hpo.jax.org/app/data/annotations |
| hp.phenotype_to_genes.txt | HPO phenotype to gene annotations | phenotype_to_genes.txt (62.8 MB) | Ontology | tsv | https://hpo.jax.org/app/data/annotations |
| hp.genes_to_phenotype.txt | HPO gene to phenotype annotations | genes_to_phenotype.txt (19.6 MB) | Ontology | tsv | https://hpo.jax.org/app/data/annotations |
| hp.kg-bioportal | HP KGX graph (KG-Bioportal) | HP.tar.gz (1.4 MB) | Graph | kgx | KGX TSV transform of Human Phenotype ... |
| ID | Name | URL | Category | Format | Relation | Description |
|---|---|---|---|---|---|---|
| prokn.hgnchpo.gene.associated_with.diseaseorphenotype.edges | ProKN HPO Gene-to-Phenotype Association Edges | DDKG_HGNCHPO.Gene.ASSOCIATED_WITH.DiseaseOrPhenotype.edges.csv (148.6 MB) | Graph | csv | had primary source | HPO gene-to-phenotype association edges |
| ubkg.neo4j | UBKG Neo4j Docker Distribution | ubkg-downloads.xconsortia.org | Graph | neo4j | had primary source | Turnkey neo4j distributions that depl... |
| ubkg.csv | UBKG Ontology CSV Files | ubkg-downloads.xconsortia.org | Graph | csv | had primary source | Ontology CSV files that can be import... |
| kg-monarch.graph | KGX Distribution of KG-Monarch | monarch-kg.tar.gz (220.2 MB) | Graph | kgx | had primary source | KGX Distribution of KG-Monarch |
| kg-monarch.graph.jsonl | KGX JSON-L Distribution of KG-Monarch | monarch-kg.jsonl.tar.gz (301.0 MB) | Graph | kgx-jsonl | had primary source | KGX JSON-Lines Distribution of KG-Mon... |
| kg-monarch.graph.rdf | RDF Distribution of KG-Monarch | monarch-kg.nt.gz (838.5 MB) | Graph | rdfxml | had primary source | RDF Distribution of KG-Monarch |
| kg-monarch.graph.neo4j | Neo4j Dump of KG-Monarch | monarch-kg.neo4j.dump (1.3 GB) | Graph | neo4j | had primary source | Neo4j Dump of KG-Monarch |
| kg-monarch.graph.duckdb | DuckDB database of KG-Monarch | monarch-kg.duckdb (6.4 GB) | Graph | mixed | had primary source | DuckDB database of KG-Monarch |
| kg-monarch.graph.jsonl.edges | KGX JSON-L Distribution of KG-Monarch Edges | monarch-kg.jsonl.tar.gz (465.3 MB) | Graph | kgx-jsonl | had primary source | KGX JSON-Lines Distribution of KG-Mon... |
| kg-monarch.graph.jsonl.nodes | KGX JSON-L Distribution of KG-Monarch Nodes | monarch-kg.jsonl.tar.gz (465.3 MB) | Graph | kgx-jsonl | had primary source | KGX JSON-Lines Distribution of KG-Mon... |
| kg-monarch.graph.neo4j.edges | Neo4j Dump of KG-Monarch Edges | monarch-kg_edges.neo4j.csv (4.1 GB) | Graph | neo4j | had primary source | Neo4j Dump of KG-Monarch Edges |
| kg-monarch.graph.neo4j.nodes | Neo4j Dump of KG-Monarch Nodes | monarch-kg_nodes.neo4j.csv (333.4 MB) | Graph | neo4j | had primary source | Neo4j Dump of KG-Monarch Nodes |
| translator.translator_kg.graph | Translator Aggregate KGX Graph | latest | Graph | kgx-jsonl | had primary source | Aggregated KGX JSONL graph package co... |
| kg-microbe.graph.raw | KG-Microbe KGX Graph - Raw | latest | Graph | kgx | had primary source | Raw source files for all KG-Microbe f... |
| kg-microbe.graph.core | KG-Microbe KGX Graph - Core | latest | Graph | kgx | had primary source | The core KG KG-Microbe-Core with onto... |
| kg-microbe.graph.biomedical | KG-Microbe KGX Graph - Biomedical | latest | Graph | kgx | had primary source | Core plus human biomedical data (onto... |
| kg-microbe.graph.function | KG-Microbe KGX Graph - Function | latest | Graph | kgx | had primary source | Core plus Uniprot genome annotations |
| kg-microbe.graph.biomedical-function | KG-Microbe KGX Graph - Biomedical-Function | KGMicrobe-biomedical-function-20250222.tar.gz (4.3 GB) | Graph | kgx | had primary source | Biomedical plus Uniprot genome annota... |
| unibiomap.links | UniBioMap Graph Links | unibiomap.links.csv (1.3 GB) | Graph | csv | had primary source | Core UniBioMap graph edges file. |
| unibiomap.auxs | UniBioMap Graph Auxiliaries | unibiomap.auxs.tsv (563.9 MB) | Graph | tsv | had primary source | Auxiliary UniBioMap graph annotations... |
| unibiomap.pred | UniBioMap Predicted Graph | unibiomap.pred.csv (2.3 GB) | Graph | csv | had primary source | Predicted UniBioMap graph edges with ... |
| unibiomap.pred.full | UniBioMap Predicted Graph (Full) | unibiomap.pred.full.csv (5.9 GB) | Graph | csv | had primary source | Full unfiltered UniBioMap predicted g... |
| indra.cogex.code | INDRA CoGEx Build Code | indra_cogex | Process | python | had primary source | INDRA CoGEx is a graph database integ... |
| mechreponet.kg | MechRepoNet Knowledge Graph | publication | Product | mixed | had primary source | The MechRepoNet knowledge graph in it... |
| pheknowlator.graph | PheKnowLator graph | knowledge_graphs?pageState=(%22StorageObjectListTable%22:(%22f%22:%22%255B%255D%22))&inv=1&invt=Ab5_1Q&project=pheknowlator | Graph | owl | had primary source | PheKnowLator graph files, including s... |
| cancer-genome-interpreter.clinicalkg.graph | CKG Graph Dump | 1 | Graph | mixed | had primary source | Neo4j database dump of the Clinical K... |
| clinicalkg.graph | CKG Graph Dump | 1 | Graph | mixed | had primary source | Neo4j database dump of the Clinical K... |
| ckg.graph | CKG Graph Database Dump | 1 | Graph | neo4j | had primary source | Graph database dump and additional re... |
| rtx-kg2.graph.nodes | RTX-KG2.10.1c KGX JSONL Nodes | kg2c-2.10.1-v1.0-nodes.jsonl.gz (359.1 MB) | Graph | kgx-jsonl | had primary source | Nodes for KGX distribution of the RTX... |
| rtx-kg2.graph.edges | RTX-KG2.10.1c KGX JSONL Edges | kg2c-2.10.1-v1.0-edges.jsonl.gz (1.7 GB) | Graph | kgx-jsonl | had primary source | Edges for KGX distribution of the RTX... |
| rtx-kg2.neo4j | RTX-KG2 Neo4j | arax.ncats.io | Programming Interface | http | had primary source | Neo4j distribution of the RTX-KG2 as ... |
| icees-kg.graph | KGX distribution of the ICEES Exposures KP | 1.5.0 | Graph | kgx-jsonl | had primary source | KGX distribution of the ICEES Exposur... |
| icees-kg.trapi | ICEES KG TRAPI API | icees-kg-trapi | Programming Interface | http | had primary source | Translator Reasoner API (TRAPI) endpo... |
| icees-kg.metadata | ICEES KG Metadata | metadata-metadata-get-icees-kg | Product | json | had primary source | Meta knowledge graph and metadata des... |
| rna-kg.kg.neo4j | RNA-KG Neo4j Dump | rnakgv20.dump (3.7 GB) | Graph | neo4j | had primary source | RNA-KG as a Neo4j Dump |
| rna-kg.kg.nodes | RNA-KG Nodes | nodes.csv (4.1 GB) | Graph | csv | had primary source | RNA-KG Nodes in CSV format |
| rna-kg.kg.edges | RNA-KG Edges | edges.csv (17.1 GB) | Graph | csv | had primary source | RNA-KG Edges in CSV format |
| disgenet.data | DisGeNET Data | www.disgenet.com | Graph | http | had primary source | DisGeNET data, including gene to dise... |
| efo.owl | EFO OWL | efo.owl (229.5 MB) | Ontology | owl | had primary source | The latest release of EFO in OWL format |
| efo.obo | EFO OBO | efo.obo (61.1 MB) | Ontology | obo | had primary source | The latest release of EFO in OBO format |
| drug-approvals-kp.graph.nodes | Drug Approvals KP Graph Nodes | drug_approvals_kg_nodes_v0.3.9.tsv (685.0 KB) | Graph | kgx | had primary source | Nodes for the Drug Approvals KP, v0.3.9 |
| drug-approvals-kp.graph.edges | Drug Approvals KP Graph Edges | drug_approvals_kg_edges_v0.3.9.tsv (29.6 MB) | Graph | kgx | had primary source | Edges for the Drug Approvals KP, v0.3.9 |
| drugmechdb.graph | DrugMechDB Graph Dataset | zenodo.8139357 | Graph | mixed | had primary source | Curated mechanistic drug–disease path... |
| mondo.sssom | MONDO SSSOM | mondo.sssom.tsv (1.4 MB) | Mapping | sssom | had primary source | MONDO SSSOM. Mappings from MONDO iden... |
| medgen.hpo-mapping | MedGen HPO Mapping | MedGen_HPO_Mapping.txt.gz (380.5 KB) | Mapping | txt | had primary source | Mappings between MedGen and Human Phe... |
| medgen.hpo-omim-mapping | MedGen HPO OMIM Mapping | MedGen_HPO_OMIM_Mapping.txt.gz (3.9 MB) | Mapping | txt | had primary source | Combined mappings between MedGen, HPO... |
| medgen.hpo-history | HPO CUI History | HPO_CUI_history.txt (1.2 MB) | Product | txt | had primary source | History file tracking changes to HPO ... |
| translator.hpoa.graph | Translator HPOA KGX Graph | latest | Graph | kgx-jsonl | had primary source | KGX JSONL graph package for HPOA dist... |
| enrichr-kg.graph | Enrichr-KG Neo4j Database | enrichr-kg-042123.dump (498.0 MB) | Graph | neo4j | had primary source | Neo4j graph database integrating Enri... |
| oregano.graph | OREGANO Knowledge Graph | Graphs | Graph | http | was derived from | The OREGANO knowledge graph dataset i... |
| pharmebinet.json | PharMeBINet JSON Release | content (1.8 GB) | Graph | json | was derived from | PharMeBINet V2 JSON release published... |
| pharmebinet.tsv | PharMeBINet TSV Release | content (1.8 GB) | Graph | tsv | was derived from | PharMeBINet V2 TSV release published ... |
| pharmebinet.graphml | PharMeBINet GraphML Release | content (1.9 GB) | Graph | mixed | was derived from | PharMeBINet V2 GraphML release publis... |
| pharmebinet.neo4j | PharMeBINet Neo4j Database | content (3.6 GB) | Graph | neo4j | was derived from | PharMeBINet V2 Neo4j database release... |
| pharmebinet.neo4j.dump | PharMeBINet Neo4j Dump | content (3.4 GB) | Graph | neo4j | was derived from | PharMeBINet V2 Neo4j dump release pub... |
| eram.web | eRAM Web Interface | eram | Graphical Interface | http | was informed by | Web-based interface for browsing and ... |
| eram.downloads | eRAM Data Downloads | download.php | Product | mixed | was derived from | Downloadable data files containing ra... |
| kg-predict.gpkg | GP-KG Knowledge Graph Data | GP_KG.txt (46.2 MB) | Graph | tsv | was derived from | GP-KG tab-delimited knowledge graph c... |
| msigdb.downloads.human ⚠ | MSigDB Human Gene Sets Downloads | downloads.jsp#msigdb | Product | mixed | used | Downloadable gene set files in GMT, X... |
| msigdb.downloads.mouse ⚠ | MSigDB Mouse Gene Sets Downloads | downloads.jsp#msigdb | Product | mixed | used | Downloadable gene set files for mouse... |
| openpredict.api | OpenPredict API | docs | Programming Interface | http | used | TRAPI 1.4 API for predicted drug trea... |
| openpredict.predictions ⚠ | OpenPredict Prediction Data | docs | Product | mixed | used | Pre-computed prediction outputs expos... |
| orphanet.scientific_knowledge_files | Orphanet Scientific Knowledge Files | orphanet-scientific-knowledge-files | Product | xml | was informed by | Orphanet scientific knowledge files f... |
| harmonizome.downloads | Harmonizome Downloads | download | Product | mixed | was derived from | Harmonizome 3.0 processed dataset dow... |
| harmonizome.kg-neo4j | Harmonizome Knowledge Graph Neo4j Database | harmonizome-kg.maayanlab.cloud | Graph | neo4j | was derived from | Neo4j knowledge graph serialization o... |
| biobtree.api | BioBTree REST API | api | Programming Interface | http | had primary source | REST API for searching identifiers an... |
| genecards.web.interface | GeneCards Web Interface | www.genecards.org | Graphical Interface | http | had primary source | Web-based interface for searching and... |
| biobtree.graph.human-subgraph | BioBTree Knowledge Graph - Human Subgraph (KGX) | 20816742 | Graph | kgx | had primary source | Human-scoped, Neo4j-ready subgraph of... |
| gp-kg.graph | GP-KG | GP_KG.txt (46.2 MB) | Graph | txt | was derived from | GP_KG.txt |
| kg-alzheimers.graph ⚠ | KGX Distribution of KG-Alzheimers | kg-alzheimers.tar.gz (201.1 MB) | Graph | kgx | had primary source | KGX Distribution of KG-Alzheimers |
| kg-covid-19.graph ⚠ | KG-COVID-19 graph | kg-covid-19 | Graph | kgx | had primary source | KGX nodes and edges for KG-COVID-19 |
| kg-idg.graph ⚠ | KGX Distribution of KG-IDG | kg-idg.tar.gz | Graph | kgx | had primary source | KGX Distribution of KG-IDG |
| np-kg.graph.tsv | NP-KG TSV | NP-KG_v3.0.0.tsv?download=1 (1.0 GB) | Graph | tsv | had primary source | Merged KG with ontology-grounded KG a... |
| np-kg.graph.networkx | NP-KG gpickle | NP-KG_v3.0.0.gpickle?download=1 (892.7 MB) | Graph | mixed | had primary source | Merged KG with ontology-grounded KG a... |
| primekg.graph ⚠ | PrimeKG Full Dataset | 6180620 | Graph | csv | had primary source | The full PrimeKG dataset containing d... |
| sri-reference-kg.graph | SRI-Reference KG (KGX distribution) | monarch-kg.tar.gz (219.4 MB) | Graph | kgx | had primary source | KGX distribution of the SRI-Reference KG |
| unibiomap.phenotype_desc ⚠ | UniBioMap Phenotype Descriptions | phenotype_desc.json | Graph | json | had primary source | UniBioMap phenotype entity descriptions. |
| ncatsgardkg.graph | NCATS GARD Knowledge Graph | processed | Graph | http | was influenced by | Integrated rare-disease knowledge gra... |
| oard-kg.sparql | Open Annotations for Rare Diseases (OARD) Knowledge Graph SPARQL | sparql | Programming Interface | http | was influenced by | SPARQL endpoint for Open Annotations ... |
| oard-kg.tpf | Open Annotations for Rare Diseases (OARD) Knowledge Graph TPF | oard-kg | Programming Interface | http | was influenced by | Triple Pattern Fragments endpoint for... |
The Human Phenotype Ontology (HPO) is a structured and controlled vocabulary for the phenotypic features encountered in human hereditary and other disease.
Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in obographs JSON format.
URL: http://purl.obolibrary.org/obo/hp.json
Format: json
Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in OBO file format.
URL: http://purl.obolibrary.org/obo/hp.obo
Format: obo
Manually classified version of the ontology without the use of a reasoner, with imported terms, in OWL format (RDF/XML).
URL: http://purl.obolibrary.org/obo/hp.owl
Format: owl
Manually curated version of the ontology without the use of a reasoner, with references to imported terms, in obographs JSON file format.
URL: http://purl.obolibrary.org/obo/hp/hp-base.json
Format: obo
Manually curated version of the ontology without the use of a reasoner, with references to imported terms, in OBO file format.
URL: http://purl.obolibrary.org/obo/hp/hp-base.obo
Format: obo
Manually curated version of the ontology without the use of a reasoner, with references to imported terms, in OWL (RDF/XML) file format.
URL: http://purl.obolibrary.org/obo/hp/hp-base.owl
Format: owl
Version of the ontology automatically classified with the use of a reasoner, including all imported terms, in obographs JSON file format.
URL: http://purl.obolibrary.org/obo/hp/hp-full.json
Format: json
Version of the ontology automatically classified with the use of a reasoner, including all imported terms, in OBO file format.
URL: http://purl.obolibrary.org/obo/hp/hp-full.obo
Format: obo
Version of the ontology automatically classified with the use of a reasoner, including all imported terms, in OWL (RDF/XML) file format.
URL: http://purl.obolibrary.org/obo/hp/hp-full.owl
Format: owl
Version of the ontology corresponding to the primary release (hp.owl), with translated labels, synonyms, and definitions, in obographs JSON file format.
URL: http://purl.obolibrary.org/obo/hp/hp-international.json
Format: json
Version of the ontology corresponding to the primary release (hp.owl), with translated labels, synonyms, and definitions, in OBO file format.
URL: http://purl.obolibrary.org/obo/hp/hp-international.obo
Format: obo
Version of the ontology corresponding to the primary release (hp.owl), with translated labels, synonyms, and definitions, in OWL (RDF/XML) file format.
URL: http://purl.obolibrary.org/obo/hp/hp-international.owl
Format: owl
Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in obographs JSON file format.
URL: http://purl.obolibrary.org/obo/hp/hp-simple-non-classified.json
Format: json
Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in OBO file format.
URL: http://purl.obolibrary.org/obo/hp/hp-simple-non-classified.obo
Format: obo
Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in OWL (RDF/XML) file format.
URL: http://purl.obolibrary.org/obo/hp/hp-simple-non-classified.owl
Format: owl
https://hpo.jax.org/app/data/annotations
URL: http://purl.obolibrary.org/obo/hp/phenotype.hpoa
Format: tsv
https://hpo.jax.org/app/data/annotations
URL: http://purl.obolibrary.org/obo/hp/phenotype_to_genes.txt
Format: tsv
https://hpo.jax.org/app/data/annotations
URL: http://purl.obolibrary.org/obo/hp/genes_to_phenotype.txt
Format: tsv
Domains: biological systems
Taxon: NCBITaxon:9606
This resource was automatically synchronized from the OBO Foundry registry.
Created: April 22, 2025 | Last modified: September 23, 2026