reactome

is a Data Source.

Reactome from Biopax

Domains

biological systems, pathways, systems biology, biomedical

License

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Homepage

reactome

Repository

Unknown

Infores ID

Unknown

FAIRsharing ID

Unknown

Products

From this Resource
ID Name URL Category Format Description
reactome.data.human Reactome Human from BioPAX, sqlite reactome-hs.db.gz (169.8 MB) Product Conversion from BioPAX, human subset
clinicalkg.graph CKG Graph Dump GraphProduct mixed Neo4j database dump of the Clinical K...
drugmechdb.graph DrugMechDB Graph Dataset zenodo.8139357 GraphProduct mixed Curated mechanistic drug–disease path...
From other Resources
ID Name URL Category Format Description
obo-db-ingest.rhea.sssom.tsv Rhea SSSOM rhea.sssom.tsv (150.6 KB) MappingProduct sssom Rhea SSSOM
obo-db-ingest.bigg.metabolite.sssom.tsv bigg.metabolite SSSOM bigg.metabolite.sssom.tsv (391.1 KB) MappingProduct sssom bigg.metabolite SSSOM
spoke.graph SPOKE Graph GraphProduct The SPOKE knowledge graph containing ...
ubkg.neo4j UBKG Neo4j Docker Distribution ubkg-downloads.xconsortia.org GraphProduct Turnkey neo4j distributions that depl...
ubkg.csv UBKG Ontology CSV Files ubkg-downloads.xconsortia.org GraphProduct csv Ontology CSV files that can be import...
rtx-kg2.graph.nodes RTX-KG2.10.1c KGX JSONL Nodes kg2c-2.10.1-v1.0-nodes.jsonl.gz (359.1 MB) GraphProduct kgx-jsonl Nodes for KGX distribution of the RTX...
rtx-kg2.graph.edges RTX-KG2.10.1c KGX JSONL Edges kg2c-2.10.1-v1.0-edges.jsonl.gz (1.7 GB) GraphProduct kgx-jsonl Edges for KGX distribution of the RTX...
rtx-kg2.neo4j RTX-KG2 Neo4j arax.ncats.io ProgrammingInterface Neo4j distribution of the RTX-KG2 as ...
alzkb.browser AlzKB Graph Database Browser login GraphicalInterface http A browser interface for a knowledge g...
alzkb.data AlzKB Data Release (Version 2.0.0) v2.0.0 GraphProduct Memgraph data release for AlzKB.
bioteque.embeddings Bioteque Embeddings embeddings Product Network embeddings of the Bioteque gr...
mechreponet.kg MechRepoNet Knowledge Graph publication The MechRepoNet knowledge graph in it...
indra.cogex.code INDRA CoGEx Build Code indra_cogex ProcessProduct INDRA CoGEx is a graph database integ...
kg-monarch.graph KGX Distribution of KG-Monarch monarch-kg.tar.gz (220.2 MB) GraphProduct kgx KGX Distribution of KG-Monarch
kg-monarch.graph.jsonl KGX JSON-L Distribution of KG-Monarch monarch-kg.jsonl.tar.gz GraphProduct kgx-jsonl KGX JSON-Lines Distribution of KG-Mon...
kg-monarch.graph.rdf RDF Distribution of KG-Monarch monarch-kg.nt.gz (838.5 MB) GraphProduct rdfxml RDF Distribution of KG-Monarch
kg-monarch.graph.neo4j Neo4j Dump of KG-Monarch monarch-kg.neo4j.dump GraphProduct Neo4j Dump of KG-Monarch
kg-monarch.graph.duckdb DuckDB database of KG-Monarch monarch-kg.duckdb.gz GraphProduct DuckDB database of KG-Monarch
pheknowlator.graph PheKnowLator graph knowledge_graphs?pageState=(%22StorageObjectListTable%22:(%22f%22:%22%255B%255D%22))&inv=1&invt=Ab5_1Q&project=pheknowlator GraphProduct owl PheKnowLator graph files, including s...

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