is a Data Source.
Reactome from Biopax
biological systems, pathways, systems biology, biomedical
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ID | Name | URL | Category | Format | Description |
---|---|---|---|---|---|
reactome.data.human | Reactome Human from BioPAX, sqlite | reactome-hs.db.gz (169.8 MB) | Product | ❔ | Conversion from BioPAX, human subset |
clinicalkg.graph | CKG Graph Dump | ❔ | GraphProduct | mixed | Neo4j database dump of the Clinical K... |
drugmechdb.graph | DrugMechDB Graph Dataset | zenodo.8139357 | GraphProduct | mixed | Curated mechanistic drug–disease path... |
ID | Name | URL | Category | Format | Description |
---|---|---|---|---|---|
obo-db-ingest.rhea.sssom.tsv | Rhea SSSOM | rhea.sssom.tsv (150.6 KB) | MappingProduct | sssom | Rhea SSSOM |
obo-db-ingest.bigg.metabolite.sssom.tsv | bigg.metabolite SSSOM | bigg.metabolite.sssom.tsv (391.1 KB) | MappingProduct | sssom | bigg.metabolite SSSOM |
spoke.graph | SPOKE Graph | ❔ | GraphProduct | ❔ | The SPOKE knowledge graph containing ... |
ubkg.neo4j | UBKG Neo4j Docker Distribution | ubkg-downloads.xconsortia.org | GraphProduct | ❔ | Turnkey neo4j distributions that depl... |
ubkg.csv | UBKG Ontology CSV Files | ubkg-downloads.xconsortia.org | GraphProduct | csv | Ontology CSV files that can be import... |
rtx-kg2.graph.nodes | RTX-KG2.10.1c KGX JSONL Nodes | kg2c-2.10.1-v1.0-nodes.jsonl.gz (359.1 MB) | GraphProduct | kgx-jsonl | Nodes for KGX distribution of the RTX... |
rtx-kg2.graph.edges | RTX-KG2.10.1c KGX JSONL Edges | kg2c-2.10.1-v1.0-edges.jsonl.gz (1.7 GB) | GraphProduct | kgx-jsonl | Edges for KGX distribution of the RTX... |
rtx-kg2.neo4j | RTX-KG2 Neo4j | arax.ncats.io | ProgrammingInterface | ❔ | Neo4j distribution of the RTX-KG2 as ... |
alzkb.browser | AlzKB Graph Database Browser | login | GraphicalInterface | http | A browser interface for a knowledge g... |
alzkb.data | AlzKB Data Release (Version 2.0.0) | v2.0.0 | GraphProduct | ❔ | Memgraph data release for AlzKB. |
bioteque.embeddings | Bioteque Embeddings | embeddings | Product | ❔ | Network embeddings of the Bioteque gr... |
mechreponet.kg | MechRepoNet Knowledge Graph | publication | ❔ | The MechRepoNet knowledge graph in it... | |
indra.cogex.code | INDRA CoGEx Build Code | indra_cogex | ProcessProduct | ❔ | INDRA CoGEx is a graph database integ... |
kg-monarch.graph | KGX Distribution of KG-Monarch | monarch-kg.tar.gz (220.2 MB) | GraphProduct | kgx | KGX Distribution of KG-Monarch |
kg-monarch.graph.jsonl ⚠ | KGX JSON-L Distribution of KG-Monarch | monarch-kg.jsonl.tar.gz | GraphProduct | kgx-jsonl | KGX JSON-Lines Distribution of KG-Mon... |
kg-monarch.graph.rdf | RDF Distribution of KG-Monarch | monarch-kg.nt.gz (838.5 MB) | GraphProduct | rdfxml | RDF Distribution of KG-Monarch |
kg-monarch.graph.neo4j ⚠ | Neo4j Dump of KG-Monarch | monarch-kg.neo4j.dump | GraphProduct | ❔ | Neo4j Dump of KG-Monarch |
kg-monarch.graph.duckdb ⚠ | DuckDB database of KG-Monarch | monarch-kg.duckdb.gz | GraphProduct | ❔ | DuckDB database of KG-Monarch |
pheknowlator.graph | PheKnowLator graph | knowledge_graphs?pageState=(%22StorageObjectListTable%22:(%22f%22:%22%255B%255D%22))&inv=1&invt=Ab5_1Q&project=pheknowlator | GraphProduct | owl | PheKnowLator graph files, including s... |