is a Data Source.
The 4D Nucleome (4DN) Network aims to understand the principles underlying nuclear organization in space and time (the 4th dimension). The 4DN Data Portal provides a platform to search, visualize, and download nucleomics data generated by the 4DN Network and other reference datasets.
genomics, biological systems, biomedical, medical imaging
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| 4dn.hic | 4DN Hi-C Datasets | hic-data-overview | DataProduct | tsv | A comprehensive collection of Hi-C da... |
| 4dn.microscopy | 4DN Microscopy Datasets | microscopy-data-overview | DataProduct | tsv | A collection of microscopy datasets, ... |
| 4dn.chromatin_tracing | 4DN Chromatin Tracing Datasets | chromatin-tracing-datasets | DataProduct | tsv | A specialized collection of chromatin... |
| 4dn.higlass | HiGlass | visualization | GraphicalInterface | ❔ | A web-based visualization tool for ex... |
| 4dn.jupyterhub | 4DN JupyterHub | jupyterhub | ProcessProduct | ❔ | A cloud-based Jupyter environment for... |
| 4dn.micrometa | Micro Meta App | micro-meta-app | ProcessProduct | ❔ | A tool for entering and accessing mic... |
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| ubkg.neo4j | UBKG Neo4j Docker Distribution | ubkg-downloads.xconsortia.org | GraphProduct | ❔ | Turnkey neo4j distributions that depl... |
| ubkg.csv | UBKG Ontology CSV Files | ubkg-downloads.xconsortia.org | GraphProduct | csv | Ontology CSV files that can be import... |
Harry Caufield
Github: caufieldjh
Created: June 10, 2025 | Last modified: June 12, 2025