is a Data Source.
5SRNAdb (5S rRNA Database) is a curated repository of unique full-length 5S ribosomal RNA sequences and genes across Bacteria, Archaea, and Eukaryota (cytoplasmic and organellar), providing alignments, secondary structure diagrams, taxonomic browsing, and downloadable custom or global alignments for comparative and structural studies.
genomics, biological systems
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| 5srrnadb.portal | 5SRNAdb Portal | 5srnadb | GraphicalInterface | fasta | Web portal with search, taxonomic bro... |
| 5srrnadb.downloads.archaea.sequences | Archaea Sequences FASTA | Archaea.fasta (48.4 KB) | Product | fasta | Archaea 5S rRNA sequences (non-struct... |
| 5srrnadb.downloads.archaea.structural | Archaea Structural Alignment FASTA | Archaea.ss.fasta (55.5 KB) | Product | fasta | Archaea 5S rRNA structural alignment ... |
| 5srrnadb.downloads.bacteria.sequences | Bacteria Sequences FASTA | Bacteria.fasta (1.1 MB) | Product | fasta | Bacteria 5S rRNA sequences (non-struc... |
| 5srrnadb.downloads.bacteria.structural | Bacteria Structural Alignment FASTA | Bacteria.ss.fasta (1.4 MB) | Product | fasta | Bacteria 5S rRNA structural alignment... |
| 5srrnadb.downloads.eukaryota.sequences | Eukaryota Sequences FASTA | Eukaryota.fasta (420.9 KB) | Product | fasta | Eukaryota 5S rRNA sequences (non-stru... |
| 5srrnadb.downloads.eukaryota.structural | Eukaryota Structural Alignment FASTA | Eukaryota.ss.fasta (486.0 KB) | Product | fasta | Eukaryota 5S rRNA structural alignmen... |
| 5srrnadb.downloads.plastids.sequences | Plastids Sequences FASTA | Plastids.fasta (124.3 KB) | Product | fasta | Plastids 5S rRNA sequences (non-struc... |
| 5srrnadb.downloads.plastids.structural | Plastids Structural Alignment FASTA | Plastids.ss.fasta (149.6 KB) | Product | fasta | Plastids 5S rRNA structural alignment... |
| 5srrnadb.downloads.mitochondria.sequences | Mitochondria Sequences FASTA | Mitochondria.fasta (15.8 KB) | Product | fasta | Mitochondria 5S rRNA sequences (non-s... |
| 5srrnadb.downloads.mitochondria.structural | Mitochondria Structural Alignment FASTA | Mitochondria.ss.fasta (18.2 KB) | Product | fasta | Mitochondria 5S rRNA structural align... |
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| rnacentral.portal | RNAcentral Portal | rnacentral.org | GraphicalInterface | http | Web portal for searching and browsing... |
| rnacentral.api | RNAcentral REST API | api | ProgrammingInterface | http | REST API for programmatic access to R... |
| rnacentral.ftp | RNAcentral FTP Archive | RNAcentral | Product | http | FTP archive with current and archived... |
| rnacentral.public-db | RNAcentral Public Postgres Database | public-database | DataModelProduct | postgres | Public PostgreSQL database for direct... |
5SRNAdb is a specialized database of curated 5S ribosomal RNA sequences and genes from Bacteria, Archaea, and Eukaryota, emphasizing high-quality non-redundant sequences, structural alignment, and visualization. It supports dynamic generation of customized multiple sequence alignments and interactive secondary structure diagrams.
Please cite: Szymanski M, Zielezinski A, Karlowski WM. 5SRNAdb: an information resource for 5S ribosomal RNAs. Nucleic Acids Res. 2016;44:D180–D183. doi:10.1093/nar/gkv1081
Created: September 09, 2025 | Last modified: September 10, 2025