is an Aggregator.
The Alliance of Genome Resources (Alliance) is a collaborative platform integrating model organism knowledge (FlyBase, MGD, RGD, SGD, WormBase, Xenbase, ZFIN) and Gene Ontology Consortium annotations to provide harmonized comparative genomics, gene function, phenotype, disease association, expression, orthology, and variant data for cross-species research and translation.
Unknown
Unknown
Unknown
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| alliance.portal | Alliance Web Portal | www.alliancegenome.org | Graphical Interface | http | Primary web portal for integrated cro... |
| alliance.api | Alliance API | swagger-ui | Programming Interface | http | REST/JSON API providing programmatic ... |
| alliance.openapi | Alliance OpenAPI Spec | openapi | Programming Interface | json | OpenAPI specification (machine-readab... |
| alliance.mine | AllianceMine | alliancemine | Graphical Interface | http | AllianceMine instance (InterMine-base... |
| alliance.jbrowse2 | Alliance JBrowse 2 | jbrowse2 | Graphical Interface | http | JBrowse 2 genome browser instance for... |
| alliance.textpresso | Alliance Textpresso | textpresso | Graphical Interface | http | Textpresso literature mining interfac... |
| alliance.downloads ⚠ | Alliance Data Downloads (Root) | download.alliancegenome.org (0 B) | Product | mixed | Root directory for release-specific b... |
| ID | Name | URL | Category | Format | Relation | Description |
|---|---|---|---|---|---|---|
| kg-monarch.graph | KGX Distribution of KG-Monarch | monarch-kg.tar.gz (220.2 MB) | Graph | kgx | had primary source | KGX Distribution of KG-Monarch |
| kg-monarch.graph.jsonl | KGX JSON-L Distribution of KG-Monarch | monarch-kg.jsonl.tar.gz (301.0 MB) | Graph | kgx-jsonl | had primary source | KGX JSON-Lines Distribution of KG-Mon... |
| kg-monarch.graph.rdf | RDF Distribution of KG-Monarch | monarch-kg.nt.gz (838.5 MB) | Graph | rdfxml | had primary source | RDF Distribution of KG-Monarch |
| kg-monarch.graph.neo4j | Neo4j Dump of KG-Monarch | monarch-kg.neo4j.dump (1.3 GB) | Graph | neo4j | had primary source | Neo4j Dump of KG-Monarch |
| kg-monarch.graph.duckdb | DuckDB database of KG-Monarch | monarch-kg.duckdb (6.4 GB) | Graph | mixed | had primary source | DuckDB database of KG-Monarch |
| kg-monarch.graph.jsonl.edges | KGX JSON-L Distribution of KG-Monarch Edges | monarch-kg.jsonl.tar.gz (465.3 MB) | Graph | kgx-jsonl | had primary source | KGX JSON-Lines Distribution of KG-Mon... |
| kg-monarch.graph.jsonl.nodes | KGX JSON-L Distribution of KG-Monarch Nodes | monarch-kg.jsonl.tar.gz (465.3 MB) | Graph | kgx-jsonl | had primary source | KGX JSON-Lines Distribution of KG-Mon... |
| kg-monarch.graph.neo4j.edges | Neo4j Dump of KG-Monarch Edges | monarch-kg_edges.neo4j.csv (4.1 GB) | Graph | neo4j | had primary source | Neo4j Dump of KG-Monarch Edges |
| kg-monarch.graph.neo4j.nodes | Neo4j Dump of KG-Monarch Nodes | monarch-kg_nodes.neo4j.csv (333.4 MB) | Graph | neo4j | had primary source | Neo4j Dump of KG-Monarch Nodes |
| translator.alliance.graph | Translator Alliance KGX Graph | latest | Graph | kgx-jsonl | had primary source | KGX JSONL graph package for Alliance ... |
| translator.translator_kg.graph | Translator Aggregate KGX Graph | latest | Graph | kgx-jsonl | had primary source | Aggregated KGX JSONL graph package co... |
| genecards.web.interface | GeneCards Web Interface | www.genecards.org | Graphical Interface | http | had primary source | Web-based interface for searching and... |
| kg-alzheimers.graph ⚠ | KGX Distribution of KG-Alzheimers | kg-alzheimers.tar.gz (201.1 MB) | Graph | kgx | had primary source | KGX Distribution of KG-Alzheimers |
| sri-reference-kg.graph | SRI-Reference KG (KGX distribution) | monarch-kg.tar.gz (219.4 MB) | Graph | kgx | had primary source | KGX distribution of the SRI-Reference KG |
The Alliance of Genome Resources unifies knowledge from multiple model organism databases (MODs) and the Gene Ontology Consortium, harmonizing identifiers, nomenclature, and biological annotations to enable robust comparative genomics and translational research. Core data domains include gene function (GO), phenotypes, disease associations, alleles/variants, gene expression, orthology, and curated literature links. Cross-species integration supports inference of human disease mechanisms via model organism evidence.
Data are sourced and synchronized from member MODs (FlyBase, MGD, RGD, SGD, WormBase, Xenbase, ZFIN) and the Gene Ontology Consortium, with standardized ontologies and identifier cross-references to ensure interoperability.
See the licensing and privacy page for data reuse terms. Please cite the Alliance and relevant member database publications when using integrated data. A formal citation suggestion is available on the “Cite Us” page.
For support, feedback, or data submission inquiries use the contact form on the site.
Created: August 13, 2025 | Last modified: September 23, 2026