is an Aggregator.
The Alliance of Genome Resources (Alliance) is a collaborative platform integrating model organism knowledge (FlyBase, MGD, RGD, SGD, WormBase, Xenbase, ZFIN) and Gene Ontology Consortium annotations to provide harmonized comparative genomics, gene function, phenotype, disease association, expression, orthology, and variant data for cross-species research and translation.
genomics
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| alliance.portal | Alliance Web Portal | www.alliancegenome.org | GraphicalInterface | http | Primary web portal for integrated cro... |
| alliance.api | Alliance API | swagger-ui | ProgrammingInterface | ❔ | REST/JSON API providing programmatic ... |
| alliance.openapi | Alliance OpenAPI Spec | openapi | ProgrammingInterface | json | OpenAPI specification (machine-readab... |
| alliance.mine | AllianceMine | alliancemine | GraphicalInterface | ❔ | AllianceMine instance (InterMine-base... |
| alliance.jbrowse2 | Alliance JBrowse 2 | jbrowse2 | GraphicalInterface | ❔ | JBrowse 2 genome browser instance for... |
| alliance.textpresso | Alliance Textpresso | textpresso | GraphicalInterface | ❔ | Textpresso literature mining interfac... |
| alliance.downloads | Alliance Data Downloads (Root) | download.alliancegenome.org | Product | ❔ | Root directory for release-specific b... |
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| kg-monarch.graph | KGX Distribution of KG-Monarch | monarch-kg.tar.gz (220.2 MB) | GraphProduct | kgx | KGX Distribution of KG-Monarch |
| kg-monarch.graph.jsonl | KGX JSON-L Distribution of KG-Monarch | monarch-kg.jsonl.tar.gz (301.0 MB) | GraphProduct | kgx-jsonl | KGX JSON-Lines Distribution of KG-Mon... |
| kg-monarch.graph.rdf | RDF Distribution of KG-Monarch | monarch-kg.nt.gz (838.5 MB) | GraphProduct | rdfxml | RDF Distribution of KG-Monarch |
| kg-monarch.graph.neo4j | Neo4j Dump of KG-Monarch | monarch-kg.neo4j.dump (1.3 GB) | GraphProduct | ❔ | Neo4j Dump of KG-Monarch |
| kg-monarch.graph.duckdb | DuckDB database of KG-Monarch | monarch-kg.duckdb (6.4 GB) | GraphProduct | ❔ | DuckDB database of KG-Monarch |
| kg-monarch.graph.jsonl.edges | KGX JSON-L Distribution of KG-Monarch Edges | monarch-kg_edges.jsonl (14.2 GB) | GraphProduct | kgx-jsonl | KGX JSON-Lines Distribution of KG-Mon... |
| kg-monarch.graph.jsonl.nodes | KGX JSON-L Distribution of KG-Monarch Nodes | monarch-kg_nodes.jsonl (1.1 GB) | GraphProduct | kgx-jsonl | KGX JSON-Lines Distribution of KG-Mon... |
| kg-monarch.graph.neo4j.edges | Neo4j Dump of KG-Monarch Edges | monarch-kg_edges.neo4j.csv (4.1 GB) | GraphProduct | neo4j | Neo4j Dump of KG-Monarch Edges |
| kg-monarch.graph.neo4j.nodes | Neo4j Dump of KG-Monarch Nodes | monarch-kg_nodes.neo4j.csv (333.4 MB) | GraphProduct | neo4j | Neo4j Dump of KG-Monarch Nodes |
Created: August 13, 2025 | Last modified: September 03, 2025