is a Data Source.
BindingDB is a public, web-accessible database of measured binding affinities between small, drug-like molecules and protein targets, focusing on the interactions of proteins with small, drug-like molecules. It contains 3.0M data points for 1.3M compounds and 9.6K targets, serving as a crucial resource for drug discovery, pharmacology, and related fields.
biomedical, drug discovery, chemistry and biochemistry, pharmacology
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| bindingdb.all_2d | BindingDB All Data (2D structures) | BindingDB_All_2D_202507_sdf.zip | Product | sdf | Full dataset containing all binding m... |
| bindingdb.all_3d | BindingDB All Data (3D structures) | BindingDB_All_3D_202507_sdf.zip | Product | sdf | Full dataset containing all binding m... |
| bindingdb.all_tsv | BindingDB All Data (TSV) | BindingDB_All_202507_tsv.zip | Product | tsv | Full dataset containing all binding m... |
| bindingdb.articles_2d | BindingDB Articles Data (2D structures) | BindingDB_BindingDB_Articles_2D_202507_sdf.zip | Product | sdf | Data curated from articles by Binding... |
| bindingdb.articles_3d | BindingDB Articles Data (3D structures) | BindingDB_BindingDB_Articles_3D_202507_sdf.zip | Product | sdf | Data curated from articles by Binding... |
| bindingdb.articles_tsv | BindingDB Articles Data (TSV) | BindingDB_BindingDB_Articles_202507_tsv.zip | Product | tsv | Data curated from articles by Binding... |
| bindingdb.chembl_2d | BindingDB ChEMBL Data (2D structures) | BindingDB_ChEMBL_2D_202507_sdf.zip | Product | sdf | Data in BindingDB drawn from ChEMBL w... |
| bindingdb.chembl_3d | BindingDB ChEMBL Data (3D structures) | BindingDB_ChEMBL_3D_202507_sdf.zip | Product | sdf | Data in BindingDB drawn from ChEMBL w... |
| bindingdb.chembl_tsv | BindingDB ChEMBL Data (TSV) | BindingDB_ChEMBL_202507_tsv.zip | Product | tsv | Data in BindingDB drawn from ChEMBL i... |
| bindingdb.patents_2d | BindingDB Patents Data (2D structures) | BindingDB_Patents_2D_202507_sdf.zip | Product | sdf | Data in BindingDB drawn from Patents ... |
| bindingdb.patents_3d | BindingDB Patents Data (3D structures) | BindingDB_Patents_3D_202507_sdf.zip | Product | sdf | Data in BindingDB drawn from Patents ... |
| bindingdb.patents_tsv | BindingDB Patents Data (TSV) | BindingDB_Patents_202507_tsv.zip | Product | tsv | Data in BindingDB drawn from Patents ... |
| bindingdb.pubchem_2d | BindingDB PubChem Data (2D structures) | BindingDB_PubChem_2D_202507_sdf.zip | Product | sdf | Data in BindingDB drawn from PubChem ... |
| bindingdb.pubchem_3d | BindingDB PubChem Data (3D structures) | BindingDB_PubChem_3D_202507_sdf.zip | Product | sdf | Data in BindingDB drawn from PubChem ... |
| bindingdb.pubchem_tsv | BindingDB PubChem Data (TSV) | BindingDB_PubChem_202507_tsv.zip | Product | tsv | Data in BindingDB drawn from PubChem ... |
| bindingdb.covid19_2d | BindingDB COVID-19 Data (2D structures) | BindingDB_Covid-19_2D_202507_sdf.zip | Product | sdf | COVID-19 related binding data with 2D... |
| bindingdb.covid19_3d | BindingDB COVID-19 Data (3D structures) | BindingDB_Covid-19_3D_202507_sdf.zip | Product | sdf | COVID-19 related binding data with 3D... |
| bindingdb.covid19_tsv | BindingDB COVID-19 Data (TSV) | BindingDB_Covid-19_202507_tsv.zip | Product | tsv | COVID-19 related binding data in tab-... |
| bindingdb.target_sequences | BindingDB Target Sequences | BindingDBTargetSequences.fasta | Product | fasta | FASTA format protein sequences of all... |
| bindingdb.cid_mapping | BindingDB-PubChem CID Mapping | BindingDB_CID.txt | MappingProduct | ❔ | Mapping of BindingDB monomer (compoun... |
| bindingdb.sid_mapping | BindingDB-PubChem SID Mapping | BindingDB_SID.txt | MappingProduct | ❔ | Mapping of BindingDB monomer (compoun... |
| bindingdb.chebi_mapping | BindingDB-ChEBI Mapping | BindingDB_CHEBI_ID.txt | MappingProduct | ❔ | Mapping of BindingDB monomer (compoun... |
| bindingdb.drugbank_mapping | BindingDB-DrugBank Mapping | BindingDB_DrugBankID.txt | MappingProduct | ❔ | Mapping of BindingDB monomer (compoun... |
| bindingdb.uniprot_mapping | BindingDB-UniProt Mapping | BindingDB_UniProt.txt | MappingProduct | ❔ | Mapping of BindingDB polymer (single ... |
| bindingdb.api | BindingDB RESTful API | BindingDBRESTfulAPI.jsp | ProgrammingInterface | ❔ | RESTful web services for programmatic... |
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| spoke.graph | SPOKE Graph | ❔ | GraphProduct | ❔ | The SPOKE knowledge graph containing ... |