is an Aggregator.
BioGPS is an extensible and customizable gene annotation portal that aggregates gene-centric data (expression profiles, functional annotations, pathways, interactions, ontologies) from numerous external resources using a community-driven plugin system. It enables interactive expression visualization across tissues/cell types and provides programmatic and bulk access to underlying annotation tables.
genomics, biomedical, biological systems
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| biogps.portal | BioGPS Portal | biogps.org | GraphicalInterface | http | Main BioGPS web portal with searchabl... |
| biogps.api | BioGPS API | api | ProgrammingInterface | http | REST-style API for retrieving gene an... |
| biogps.downloads | BioGPS Downloads | downloads | Product | http | Bulk annotation and expression data d... |
| biogps.faq | BioGPS FAQ / Help | faq | DocumentationProduct | http | FAQ and usage guidance including plug... |
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| pharmkg.graph | PharmKG graph | 4077338 | GraphProduct | ❔ | Cleaned benchmark graph (PharmKG-8k) ... |
| genecards.expression.data ⚠ | GeneCards Expression Data | www.genecards.org | Product | http | Gene expression data aggregated from ... |
BioGPS is a community-extensible gene annotation and expression aggregation portal. It integrates numerous external resources via a plugin architecture, presenting unified gene-centric pages with tissue/cell-type expression charts, functional annotations, pathways, ontologies, interactions, and links out to specialized databases.
Please cite the 2009 BioGPS portal paper (preferred) and optionally the 2013 update when using the resource.
Created: August 12, 2025 | Last modified: September 10, 2025