is a Data Source.
CCLE is the Cancer Cell Line Encyclopedia, a collaboration between the Broad Institute and the Novartis Institutes for Biomedical Research.
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CCLE
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| ccle.docs | CCLE Project Site | ccle | DocumentationProduct | http | CCLE project site describing the Canc... |
| ccle.datasets | CCLE Datasets | datasets | Product | http | CCLE datasets page linking processed ... |
| ID | Name | URL | Category | Format | Relation | Description |
|---|---|---|---|---|---|---|
| obo-db-ingest.ccle.obo | ccle OBO | ccle.obo (18.9 KB) | Product | obo | had primary source | ccle OBO |
| obo-db-ingest.ccle.owl | ccle OWL | ccle.owl (29.1 KB) | Product | owl | had primary source | ccle OWL |
| obo-db-ingest.ccle.json | ccle OBO Graph JSON | ccle.json (22.7 KB) | Product | json | had primary source | ccle OBO Graph JSON |
| obo-db-ingest.ccle.sssom.tsv | ccle SSSOM | ccle.sssom.tsv (14.1 KB) | MappingProduct | sssom | had primary source | ccle SSSOM |
| bioteque.embeddings | Bioteque Embeddings | embeddings | Product | ❔ | had primary source | Network embeddings of the Bioteque gr... |
| indra.cogex.code | INDRA CoGEx Build Code | indra_cogex | ProcessProduct | ❔ | had primary source | INDRA CoGEx is a graph database integ... |
| obo-db-ingest.ccle.tsv | ccle Nodes TSV | ccle.tsv (11.9 KB) | Product | tsv | had primary source | ccle Nodes TSV |
| pharmacodb.portal | PharmacoDB Web Application | pharmacodb.ca | GraphicalInterface | http | was influenced by | Primary web portal for searching and ... |
| pharmacodb.api | PharmacoDB API | v1 | ProgrammingInterface | http | was influenced by | RESTful JSON API providing programmat... |
| pharmacodb.documentation | PharmacoDB Documentation | documentation | DocumentationProduct | http | was influenced by | Comprehensive user documentation cove... |
| harmonizome.downloads | Harmonizome Downloads | download | Product | mixed | was derived from | Harmonizome 3.0 processed dataset dow... |
| harmonizome.kg-neo4j | Harmonizome Knowledge Graph Neo4j Database | harmonizome-kg.maayanlab.cloud | GraphProduct | neo4j | was derived from | Neo4j knowledge graph serialization o... |
The Cancer Cell Line Encyclopedia (CCLE) is a large-scale collaboration that characterizes cancer cell lines across genomic, transcriptomic, proteomic, epigenetic, metabolomic, and pharmacologic dimensions. It was established to make well-annotated cancer cell models more useful for target discovery, biomarker analysis, and drug-response modeling.
In KG-Registry, the owned products for CCLE point to the main project site and datasets page, while the OBO-DB-Ingest, Bioteque, and INDRA-related entries are retained as downstream derivative products built from or informed by CCLE data.
Created: March 18, 2025 | Last modified: May 30, 2026