cfde-gse

is a Knowledge Graph.

Common Fund Data Ecosystem Gene Set Enrichment (CFDE-GSE) is a knowledge graph that integrates gene set collections from multiple Common Fund programs to enable cross-program gene set enrichment analysis, functional annotation, and systems-level understanding of biological processes across diverse biomedical research domains.

Domains

biomedical, genomics, systems biology, biological systems

Infores ID

Unknown

FAIRsharing ID

Unknown

Contacts

Common Fund Data Ecosystem

Email: cfde-support@nih-cfde.org

URL: https://cfde.cloud/

Ma'ayan Laboratory

Email: avi.maayan@mssm.edu

URL: https://labs.icahn.mssm.edu/maayanlab/

Publications

Cross-program analysis of the CFDE gene sets reveals common biological themes Preferred

Products

From this Resource

ID	Name	URL	Category	Format	Description
cfde-gse.portal	CFDE Gene Set Enrichment Portal	gse	GraphicalInterface	http	Interactive web interface for cross-p...
cfde-gse.api	CFDE-GSE API	api	ProgrammingInterface	http	RESTful API for programmatic access t...
cfde-gse.graph	CFDE-GSE Knowledge Graph	❔	GraphProduct	neo4j	Neo4j knowledge graph containing inte...
cfde-gse.genesets ⚠	CFDE Gene Set Collections	downloads	Product	❔	Standardized gene set collections fro...

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Created: September 23, 2025 | Last modified: September 23, 2025