is a Data Source.
dictyBase is a comprehensive genomic database for the social amoeba Dictyostelium discoideum and related species. It provides genomic, phenotypic, and molecular data including gene annotations, protein sequences, expression data, phenotypes, literature, and community annotations. The database serves as the central resource for Dictyostelium researchers worldwide.
genomics, organisms, biological systems
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infores:dictybase
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| dictybase.annotations.gff | dictyBase Genome Annotations | downloads | Product | gff | Genome assembly and annotations in GF... |
| dictybase.genome.fasta | dictyBase Genome Sequences | downloads | Product | fasta | Genome sequence data in FASTA format |
| dictybase.proteins.fasta | dictyBase Protein Sequences | downloads | Product | fasta | Protein sequence data in FASTA format |
| dictybase.graphql.api | dictyBase GraphQL API | graphql | ProgrammingInterface | graphql | GraphQL API for programmatic access t... |
| dictybase.genome.browser | dictyBase Genome Browser | dictybase.dev | GraphicalInterface | ❔ | Web-based browser for exploring Dicty... |
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| rnacentral.portal | RNAcentral Portal | rnacentral.org | GraphicalInterface | http | Web portal for searching and browsing... |
| rnacentral.api | RNAcentral REST API | api | ProgrammingInterface | http | REST API for programmatic access to R... |
| rnacentral.ftp | RNAcentral FTP Archive | RNAcentral | Product | http | FTP archive with current and archived... |
| rnacentral.public-db | RNAcentral Public Postgres Database | public-database | DataModelProduct | postgres | Public PostgreSQL database for direct... |
| kg-monarch.graph | KGX Distribution of KG-Monarch | monarch-kg.tar.gz (220.2 MB) | GraphProduct | kgx | KGX Distribution of KG-Monarch |
| kg-monarch.graph.jsonl | KGX JSON-L Distribution of KG-Monarch | monarch-kg.jsonl.tar.gz (301.0 MB) | GraphProduct | kgx-jsonl | KGX JSON-Lines Distribution of KG-Mon... |
| kg-monarch.graph.rdf | RDF Distribution of KG-Monarch | monarch-kg.nt.gz (838.5 MB) | GraphProduct | rdfxml | RDF Distribution of KG-Monarch |
| kg-monarch.graph.neo4j | Neo4j Dump of KG-Monarch | monarch-kg.neo4j.dump (1.3 GB) | GraphProduct | ❔ | Neo4j Dump of KG-Monarch |
| kg-monarch.graph.duckdb | DuckDB database of KG-Monarch | monarch-kg.duckdb (6.4 GB) | GraphProduct | ❔ | DuckDB database of KG-Monarch |
| kg-monarch.graph.jsonl.edges | KGX JSON-L Distribution of KG-Monarch Edges | monarch-kg_edges.jsonl (14.2 GB) | GraphProduct | kgx-jsonl | KGX JSON-Lines Distribution of KG-Mon... |
| kg-monarch.graph.jsonl.nodes | KGX JSON-L Distribution of KG-Monarch Nodes | monarch-kg_nodes.jsonl (1.1 GB) | GraphProduct | kgx-jsonl | KGX JSON-Lines Distribution of KG-Mon... |
| kg-monarch.graph.neo4j.edges | Neo4j Dump of KG-Monarch Edges | monarch-kg_edges.neo4j.csv (4.1 GB) | GraphProduct | neo4j | Neo4j Dump of KG-Monarch Edges |
| kg-monarch.graph.neo4j.nodes | Neo4j Dump of KG-Monarch Nodes | monarch-kg_nodes.neo4j.csv (333.4 MB) | GraphProduct | neo4j | Neo4j Dump of KG-Monarch Nodes |
| obo-db-ingest.dictybase.gene.tsv | dictybase.gene Nodes TSV | dictybase.gene.tsv (193.0 KB) | Product | tsv | dictybase.gene Nodes TSV |
dictyBase is the central online resource for the Dictyostelium research community. It provides comprehensive genomic and biological information about Dictyostelium discoideum, a social amoeba that serves as an important model organism for studying cell differentiation, signal transduction, cell motility, and social evolution.
dictyBase provides various downloadable datasets including:
dictyBase data is freely accessible through:
Created: August 13, 2025 | Last modified: October 07, 2025