is a Ontology.
It is part of the OBO Foundry collection.
An ontology for describing the classification of human diseases organized by etiology.
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| doid.owl | Disease Ontology, OWL format. This file contains DO's is_a asserted hierarchy plus equivalent axioms to other OBO Foundry ontologies. | doid.owl (2.0 MB) | Ontology | owl | Disease Ontology, OWL format. This fi... |
| doid.obo | Disease Ontology, OBO format. This file omits the equivalent axioms. | doid.obo (1.3 MB) | Ontology | obo | Disease Ontology, OBO format. This fi... |
| doid.kg-bioportal | DOID KGX graph (KG-Bioportal) | DOID.tar.gz (1.1 MB) | Graph | kgx | KGX TSV transform of Human Disease On... |
| ID | Name | URL | Category | Format | Relation | Description |
|---|---|---|---|---|---|---|
| ubkg.neo4j | UBKG Neo4j Docker Distribution | ubkg-downloads.xconsortia.org | Graph | neo4j | had primary source | Turnkey neo4j distributions that depl... |
| ubkg.csv | UBKG Ontology CSV Files | ubkg-downloads.xconsortia.org | Graph | csv | had primary source | Ontology CSV files that can be import... |
| alzkb.browser | AlzKB Graph Database Browser | login | Graphical Interface | http | had primary source | A browser interface for a knowledge g... |
| alzkb.data | AlzKB Data Release (Version 2.0.0) | v2.0.0 | Graph | mixed | had primary source | Memgraph data release for AlzKB. |
| spoke.graph | SPOKE Graph | data-tools | Graph | http | had primary source | The SPOKE knowledge graph containing ... |
| ibkh.graph | iBKH Knowledge Graph | ❔ | Graph | mixed | had primary source | The integrative Biomedical Knowledge ... |
| mechreponet.kg | MechRepoNet Knowledge Graph | publication | Product | mixed | had primary source | The MechRepoNet knowledge graph in it... |
| biomarker.bkg.nodes.condition | BKG Condition Nodes | Condition.nodes.zip (5.4 KB) | Graph | csv | had primary source | Nodes from Human Disease Ontology |
| cancer-genome-interpreter.clinicalkg.graph | CKG Graph Dump | 1 | Graph | mixed | had primary source | Neo4j database dump of the Clinical K... |
| clinicalkg.graph | CKG Graph Dump | 1 | Graph | mixed | had primary source | Neo4j database dump of the Clinical K... |
| ckg.graph | CKG Graph Database Dump | 1 | Graph | neo4j | had primary source | Graph database dump and additional re... |
| efo.owl | EFO OWL | efo.owl (229.5 MB) | Ontology | owl | had primary source | The latest release of EFO in OWL format |
| efo.obo | EFO OBO | efo.obo (61.1 MB) | Ontology | obo | had primary source | The latest release of EFO in OBO format |
| drug-approvals-kp.graph.nodes | Drug Approvals KP Graph Nodes | drug_approvals_kg_nodes_v0.3.9.tsv (685.0 KB) | Graph | kgx | had primary source | Nodes for the Drug Approvals KP, v0.3.9 |
| drug-approvals-kp.graph.edges | Drug Approvals KP Graph Edges | drug_approvals_kg_edges_v0.3.9.tsv (29.6 MB) | Graph | kgx | had primary source | Edges for the Drug Approvals KP, v0.3.9 |
| mondo.sssom | MONDO SSSOM | mondo.sssom.tsv (1.4 MB) | Mapping | sssom | had primary source | MONDO SSSOM. Mappings from MONDO iden... |
| cam-kp.ctd-interactions | CTD Chemical-Gene Models | ❔ | Product | http | had primary source | Chemical-gene interaction models and ... |
| hetionet.neo4j | Hetionet v1.0 Neo4j Database | browser | Graphical Interface | http | had primary source | Browser for complete Hetionet v1.0 gr... |
| hetionet.data.json | Hetionet v1.0 JSON | hetionet-v1.0.json.bz2 (131 B) | Graph | json | had primary source | Hetionet v1.0 in JSON format |
| hetionet.data.neo4j | Hetionet v1.0 Neo4j | hetionet-v1.0.db.tar.bz2 (132 B) | Graph | neo4j | had primary source | Hetionet v1.0 as a Neo4j database |
| hetionet.data.edges | Hetionet v1.0 edges (SIF) | hetionet-v1.0-edges.sif.gz (131 B) | Graph | sif | had primary source | Hetionet v1.0 as SIF edges |
| hetionet.data.nodes | Hetionet v1.0 nodes (TSV) | hetionet-v1.0-nodes.tsv (417.1 KB) | Graph | tsv | had primary source | Hetionet v1.0 as TSV nodes |
| hetionet.hetnetpy | hetnetpy | hetnetpy | Process | python | had primary source | Python package for creating, querying... |
| hetionet.search | Hetnet Connectivity Search | search | Graphical Interface | http | had primary source | Web application to search and explore... |
| lncrnalyzr.graph | lncRNAlyzr Knowledge Graph | lncRNAlyzr | Graph | neo4j | had primary source | Neo4j knowledge graph containing lncR... |
| medkg.site | MedKG Site | medkg | Graphical Interface | http | had primary source | Graphical interface for MedKG |
| rtx-kg2.graph.nodes | RTX-KG2.10.1c KGX JSONL Nodes | kg2c-2.10.1-v1.0-nodes.jsonl.gz (359.1 MB) | Graph | kgx-jsonl | had primary source | Nodes for KGX distribution of the RTX... |
| rtx-kg2.graph.edges | RTX-KG2.10.1c KGX JSONL Edges | kg2c-2.10.1-v1.0-edges.jsonl.gz (1.7 GB) | Graph | kgx-jsonl | had primary source | Edges for KGX distribution of the RTX... |
| rtx-kg2.neo4j | RTX-KG2 Neo4j | arax.ncats.io | Programming Interface | http | had primary source | Neo4j distribution of the RTX-KG2 as ... |
| pharmebinet.json | PharMeBINet JSON Release | content (1.8 GB) | Graph | json | was derived from | PharMeBINet V2 JSON release published... |
| pharmebinet.tsv | PharMeBINet TSV Release | content (1.8 GB) | Graph | tsv | was derived from | PharMeBINet V2 TSV release published ... |
| pharmebinet.graphml | PharMeBINet GraphML Release | content (1.9 GB) | Graph | mixed | was derived from | PharMeBINet V2 GraphML release publis... |
| pharmebinet.neo4j | PharMeBINet Neo4j Database | content (3.6 GB) | Graph | neo4j | was derived from | PharMeBINet V2 Neo4j database release... |
| pharmebinet.neo4j.dump | PharMeBINet Neo4j Dump | content (3.4 GB) | Graph | neo4j | was derived from | PharMeBINet V2 Neo4j dump release pub... |
| eram.web | eRAM Web Interface | eram | Graphical Interface | http | was informed by | Web-based interface for browsing and ... |
| eram.downloads | eRAM Data Downloads | download.php | Product | mixed | was derived from | Downloadable data files containing ra... |
| pharmacotherapydb.indications | PharmacotherapyDB Indications TSV | indications.tsv (75.0 KB) | Product | tsv | used | Curated TSV catalog of drug-disease i... |
| pharmacotherapydb.diseases | PharmacotherapyDB Diseases TSV | diseases.tsv (1.6 KB) | Product | tsv | used | Disease table for the Pharmacotherapy... |
| genecards.web.interface | GeneCards Web Interface | www.genecards.org | Graphical Interface | http | had primary source | Web-based interface for searching and... |
| biomarker.bkg.edges.condition | BKG Condition Edges | Condition.edges.zip (1.1 MB) | Graph | csv | had primary source | Biomarker to Condition relationships ... |
| kg-jensenlab-diseases.nodes.kgx | DISEASES KGX nodes | DISEASES_kgx_nodes.jsonl (130 B) | Graph | kgx-jsonl | had primary source | KGX nodes file for JensenLab DISEASES KG |
| kg-jensenlab-diseases.edges.kgx | DISEASES KGX edges | DISEASES_kgx_edges.jsonl (132 B) | Graph | kgx-jsonl | had primary source | KGX edges file for JensenLab DISEASES KG |
| kg-jensenlab-diseases.edges.trapi | DISEASES TRAPI edges | DISEASES_trapi_edges.jsonl (132 B) | Graph | trapi-jsonl | had primary source | TRAPI edges file for JensenLab DISEAS... |
| sri-reference-kg.graph | SRI-Reference KG (KGX distribution) | monarch-kg.tar.gz (219.4 MB) | Graph | kgx | had primary source | KGX distribution of the SRI-Reference KG |
| unibiomap.disease_desc ⚠ | UniBioMap Disease Descriptions | disease_desc.json | Graph | json | had primary source | UniBioMap disease entity descriptions. |
| spoke-okn.graph | SPOKE-OKN Graph | spoke.ucsf.edu | Graph | ttl | was influenced by | The SPOKE-OKN knowledge graph, an OKN... |
An ontology for describing the classification of human diseases organized by etiology.
Disease Ontology, OWL format. This file contains DO’s is_a asserted hierarchy plus equivalent axioms to other OBO Foundry ontologies.
URL: http://purl.obolibrary.org/obo/doid.owl
Format: owl
Disease Ontology, OBO format. This file omits the equivalent axioms.
URL: http://purl.obolibrary.org/obo/doid.obo
Format: obo
Domains: biomedical
Taxon: NCBITaxon:9606
This resource was automatically synchronized from the OBO Foundry registry.
Created: September 29, 2025 | Last modified: September 16, 2026