is a Data Source.
DrugBank Online is a comprehensive, publicly accessible database containing detailed information on drugs and drug targets, combining chemical, pharmacological, pharmaceutical data with drug target information including sequence, structure, and pathway details.
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| drugbank.web | DrugBank Online | go.drugbank.com | Graphical Interface | http | Web interface for browsing and search... |
| drugbank.academic | DrugBank Academic Downloads | latest | Data Model | xml | Academic access to DrugBank database ... |
| drugbank.clinical.api | DrugBank Clinical API | clinical | Programming Interface | http | Clinical API for integrating DrugBank... |
| ID | Name | URL | Category | Format | Relation | Description |
|---|---|---|---|---|---|---|
| spoke.graph | SPOKE Graph | data-tools | Graph | http | had primary source | The SPOKE knowledge graph containing ... |
| rtx-kg2.graph.nodes | RTX-KG2.10.1c KGX JSONL Nodes | kg2c-2.10.1-v1.0-nodes.jsonl.gz (359.1 MB) | Graph | kgx-jsonl | had primary source | Nodes for KGX distribution of the RTX... |
| rtx-kg2.graph.edges | RTX-KG2.10.1c KGX JSONL Edges | kg2c-2.10.1-v1.0-edges.jsonl.gz (1.7 GB) | Graph | kgx-jsonl | had primary source | Edges for KGX distribution of the RTX... |
| rtx-kg2.neo4j | RTX-KG2 Neo4j | arax.ncats.io | Programming Interface | http | had primary source | Neo4j distribution of the RTX-KG2 as ... |
| alzkb.browser | AlzKB Graph Database Browser | login | Graphical Interface | http | had primary source | A browser interface for a knowledge g... |
| alzkb.data | AlzKB Data Release (Version 2.0.0) | v2.0.0 | Graph | mixed | had primary source | Memgraph data release for AlzKB. |
| bioteque.embeddings | Bioteque Embeddings | embeddings | Product | mixed | had primary source | Network embeddings of the Bioteque gr... |
| pharmkg.graph | PharmKG graph | 4077338 | Graph | mixed | had primary source | Cleaned benchmark graph (PharmKG-8k) ... |
| clinicalkg.graph | CKG Graph Dump | 1 | Graph | mixed | had primary source | Neo4j database dump of the Clinical K... |
| drugmechdb.graph | DrugMechDB Graph Dataset | zenodo.8139357 | Graph | mixed | had primary source | Curated mechanistic drug–disease path... |
| microbiomekg.api | MicrobiomeKG Plover TRAPI API | mbkp | Programming Interface | http | had primary source | Plover-hosted TRAPI web API for query... |
| cancer-genome-interpreter.clinicalkg.graph | CKG Graph Dump | 1 | Graph | mixed | had primary source | Neo4j database dump of the Clinical K... |
| genecards.pharmacogenomics ⚠ | GeneCards Pharmacogenomics Data | www.genecards.org | Product | http | had primary source | Pharmacogenomics data from PharmGKB, ... |
| ibkh.graph | iBKH Knowledge Graph | ❔ | Graph | mixed | had primary source | The integrative Biomedical Knowledge ... |
| unibiomap.links | UniBioMap Graph Links | unibiomap.links.csv (1.3 GB) | Graph | csv | had primary source | Core UniBioMap graph edges file. |
| unibiomap.auxs | UniBioMap Graph Auxiliaries | unibiomap.auxs.tsv (563.9 MB) | Graph | tsv | had primary source | Auxiliary UniBioMap graph annotations... |
| unibiomap.pred | UniBioMap Predicted Graph | unibiomap.pred.csv (2.3 GB) | Graph | csv | had primary source | Predicted UniBioMap graph edges with ... |
| unibiomap.pred.full | UniBioMap Predicted Graph (Full) | unibiomap.pred.full.csv (5.9 GB) | Graph | csv | had primary source | Full unfiltered UniBioMap predicted g... |
| drkg.graph | DRKG graph | drkg.tar.gz (206.6 MB) | Graph | mixed | had primary source | DRKG graph files, including a TSV of ... |
| hetionet.neo4j | Hetionet v1.0 Neo4j Database | browser | Graphical Interface | http | had primary source | Browser for complete Hetionet v1.0 gr... |
| hetionet.data.json | Hetionet v1.0 JSON | hetionet-v1.0.json.bz2 (131 B) | Graph | json | had primary source | Hetionet v1.0 in JSON format |
| hetionet.data.neo4j | Hetionet v1.0 Neo4j | hetionet-v1.0.db.tar.bz2 (132 B) | Graph | neo4j | had primary source | Hetionet v1.0 as a Neo4j database |
| hetionet.data.edges | Hetionet v1.0 edges (SIF) | hetionet-v1.0-edges.sif.gz (131 B) | Graph | sif | had primary source | Hetionet v1.0 as SIF edges |
| hetionet.data.nodes | Hetionet v1.0 nodes (TSV) | hetionet-v1.0-nodes.tsv (417.1 KB) | Graph | tsv | had primary source | Hetionet v1.0 as TSV nodes |
| hetionet.hetnetpy | hetnetpy | hetnetpy | Process | python | had primary source | Python package for creating, querying... |
| hetionet.search | Hetnet Connectivity Search | search | Graphical Interface | http | had primary source | Web application to search and explore... |
| medkg.site | MedKG Site | medkg | Graphical Interface | http | had primary source | Graphical interface for MedKG |
| oregano.graph | OREGANO Knowledge Graph | Graphs | Graph | http | was derived from | The OREGANO knowledge graph dataset i... |
| pharmebinet.json | PharMeBINet JSON Release | content (3.4 GB) | Graph | json | was derived from | PharMeBINet V3 JSON release (Zenodo v... |
| pharmebinet.tsv | PharMeBINet TSV Release | content (3.5 GB) | Graph | tsv | was derived from | PharMeBINet V3 TSV release (Zenodo ve... |
| pharmebinet.graphml | PharMeBINet GraphML Release | content (3.8 GB) | Graph | mixed | was derived from | PharMeBINet V3 GraphML release (Zenod... |
| pharmebinet.neo4j | PharMeBINet Neo4j Database | content (7.7 GB) | Graph | neo4j | was derived from | PharMeBINet V3 Neo4j database release... |
| pharmebinet.neo4j.dump | PharMeBINet Neo4j Dump | content (7.5 GB) | Graph | neo4j | was derived from | PharMeBINet V3 Neo4j dump release (Ze... |
| kg-predict.gpkg | GP-KG Knowledge Graph Data | GP_KG.txt (46.2 MB) | Graph | tsv | was derived from | GP-KG tab-delimited knowledge graph c... |
| openpredict.api | OpenPredict API | docs | Programming Interface | http | used | TRAPI 1.4 API for predicted drug trea... |
| openpredict.predictions ⚠ | OpenPredict Prediction Data | docs | Product | mixed | used | Pre-computed prediction outputs expos... |
| pathwaycommons.biopax | Integrated BioPAX Model | pc-biopax.owl.gz (1.6 GB) | Product | biopax | was derived from | PC v14 integrated BioPAX Level 3 unif... |
| pathwhiz.pathways | PathWhiz Pathway Library | pathways | Graphical Interface | http | was informed by | Public library of pathway diagrams th... |
| pharmacotherapydb.indications | PharmacotherapyDB Indications TSV | indications.tsv (75.0 KB) | Product | tsv | used | Curated TSV catalog of drug-disease i... |
| pharmacotherapydb.drugs | PharmacotherapyDB Drugs TSV | drugs.tsv (6.0 KB) | Product | tsv | used | Drug table for the PharmacotherapyDB ... |
| harmonizome.downloads | Harmonizome Downloads | download | Product | mixed | was derived from | Harmonizome 3.0 processed dataset dow... |
| harmonizome.kg-neo4j | Harmonizome Knowledge Graph Neo4j Database | harmonizome-kg.maayanlab.cloud | Graph | neo4j | was derived from | Neo4j knowledge graph serialization o... |
| pathwaycommons.downloads | Pathway Commons Data Downloads | v14 | Product | mixed | was derived from | Download directory for Pathway Common... |
| pathwaycommons.sif | SIF Network Format | pc-hgnc.sif.gz (9.4 MB) | Product | sif | was derived from | PC v14 Simple Interaction Format netw... |
| pathwaycommons.gmt | GMT Gene Set Format | pc-hgnc.gmt.gz (256.4 KB) | Product | tsv | was derived from | PC v14 Gene Matrix Transposed gene se... |
| pathwaycommons.txt | Extended SIF TXT Format | pc-hgnc.txt.gz (110.3 MB) | Product | txt | was derived from | PC v14 tab-delimited extended SIF nod... |
| predict.method | PREDICT Drug-Indication Inference Method | msb.2011.26 | Process | http | used | PREDICT computational method for larg... |
| predict.supporting-information | PREDICT Supporting Information | PMC3159979 | Product | mixed | used | Supporting information for the PREDIC... |
| cardiokg.neo4j | CardioKG Neo4j graph construction scripts | zenodo.16025953 | Graph | neo4j | had primary source | Neo4j construction artifacts for Card... |
| genecards.web.interface | GeneCards Web Interface | www.genecards.org | Graphical Interface | http | had primary source | Web-based interface for searching and... |
| redrugs.source | ReDrugs Source Code | redrugs | Product | python | had primary source | ReDrugS source code (TurboGears/SADI ... |
| gp-kg.graph | GP-KG | GP_KG.txt (46.2 MB) | Graph | txt | was derived from | GP_KG.txt |
| molepro.graph.nodes | Nodes for Molecular Data KP | nodes.tsv (3.4 GB) | Graph | kgx | had primary source | KGX nodes for Molecular Data KP |
| molepro.graph.edges | Edges for Molecular Data KP | edges.tsv (18.8 GB) | Graph | kgx | had primary source | KGX edges for Molecular Data KP |
| np-kg.graph.tsv | NP-KG TSV | NP-KG_v3.0.0.tsv?download=1 (1.0 GB) | Graph | tsv | had primary source | Merged KG with ontology-grounded KG a... |
| np-kg.graph.networkx | NP-KG gpickle | NP-KG_v3.0.0.gpickle?download=1 (892.7 MB) | Graph | mixed | had primary source | Merged KG with ontology-grounded KG a... |
| pharmdb.graph | PharmDB-K Graph | ❔ | Graph | http | had primary source | Integrated pharmacological knowledge ... |
| primekg.graph ⚠ | PrimeKG Full Dataset | 6180620 | Graph | csv | had primary source | The full PrimeKG dataset containing d... |
| spoke-okn.graph | SPOKE-OKN Graph | spoke.ucsf.edu | Graph | ttl | was influenced by | The SPOKE-OKN knowledge graph, an OKN... |
| pubchem.substances.asn | PubChem Substances ASN | ASN | Product | xml | had primary source | PubChem substance information in ASN.... |
| pubchem.substances.sdf | PubChem Substances SDF | SDF | Product | sdf | had primary source | PubChem substance information in SDF ... |
| mps-db.portal ⚠ | MPS-Db Web Portal | mps.csb.pitt.edu | Graphical Interface | http | had primary source | MPS-Db web portal for browsing, analy... |
| klocd.portal | KLOCD Web Interface | www.organchip.cn | Graphical Interface | http | had primary source | KLOCD web interface for searching its... |
| molepro.api | MolePro API | api | Programming Interface | http | had primary source | MolePro API providing access to the k... |
| molepro.trapi | MolePro TRAPI Interface | ui | Programming Interface | http | had primary source | TRAPI-compliant interface for MolePro... |
| molepro.catalog | MolePro Knowledge Sources Catalog | transformers (2.0 MB) | Product | json | had primary source | Catalog of MolePro knowledge sources ... |
| stitch.portal | STITCH Web Portal | stitch-db.org | Product | http | had primary source | Web interface for searching and visua... |
| stitch.downloads | STITCH Data Downloads | download.pl | Product | tsv | had primary source | Downloadable data files containing ch... |
| stitch.api | STITCH API | access.pl?footer_active_subpage=apis | Programming Interface | http | had primary source | API for programmatic access to STITCH... |
| date.archive | DATE Archive ZIP | DATE.zip (6.9 MB) | Product | tsv | had primary source | ZIP with two TSV files: Drug_target_r... |
| mychem.api | MyChem.info API | query | Programming Interface | json | had primary source | MyChem.info REST API (v1) for queryin... |
| babel.compendia | Babel Compendia | compendia | Product | json | had primary source | Babel compendia, one file per Biolink... |
| drugmonizome.libraries ⚠ | Drugmonizome Drug Set Libraries | libraries | Product | json | was derived from | The 35 Drugmonizome drug set librarie... |
| sep-l1000.portal | SEP-L1000 Web Portal | SEP-L1000 | Graphical Interface | http | was informed by | Web portal for browsing and searching... |
DrugBank is a comprehensive knowledge base combining detailed drug information (chemical, pharmacological, and pharmaceutical) with extensive drug target information (sequence, structure, and pathway).
The database was started in 2006 in Dr. David Wishart’s lab at the University of Alberta and is widely used by the pharmaceutical industry, medicinal chemists, pharmacists, physicians, researchers, and students.
As of version 5.1.13 (January 2025), DrugBank contains:
DrugBank supports various research and clinical applications:
DrugBank offers several access options:
All usage of DrugBank data requires proper citation in any resulting publications.
Created: March 09, 2025 | Last modified: September 16, 2026