is a Data Source.
It is part of these collections: Translator, BER
EcoCyc captures information from 44,000 publications for Escherichia coli K-12 substr. MG1655. Use EcoCyc to search for knowledge on E. coli genes, regulation, and metabolism; analyze transcriptomics data; perform comparative analyses; and run a metabolic model.
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| ecocyc.web | EcoCyc Web Interface | ecocyc.org | GraphicalInterface | http | Web interface for EcoCyc database |
| ecocyc.api | EcoCyc Web Services | web-services.shtml | ProgrammingInterface | http | Web services and APIs for programmati... |
| ecocyc.metabolic_model | EcoCyc Metabolic Model | 79 | ProcessProduct | http | Metabolic model for E. coli K-12 deri... |
| ID | Name | URL | Category | Format | Relation | Description |
|---|---|---|---|---|---|---|
| obo-db-ingest.rhea.sssom.tsv | rhea SSSOM | rhea.sssom.tsv (150.6 KB) | MappingProduct | sssom | had primary source | rhea SSSOM |
EcoCyc is the curated BioCyc database for Escherichia coli K-12 substr. MG1655. It integrates literature-backed knowledge about genes, gene regulation, metabolism, transport, protein complexes, and cellular processes into a single reference environment for microbial systems biology.
Beyond being a reference encyclopedia, EcoCyc exposes interactive pathway and
genome browsers, comparative analysis tools, omics-data visualization, web
services, and a published metabolic model. The shared rhea SSSOM mapping stays
on this page as a propagated downstream product because it reuses EcoCyc reaction
content in a cross-resource integration workflow.
Created: March 17, 2025 | Last modified: May 30, 2026