ecocyc

is a Data Source.

It is part of these collections: Translator, BER

EcoCyc captures information from 44,000 publications for Escherichia coli K-12 substr. MG1655. Use EcoCyc to search for knowledge on E. coli genes, regulation, and metabolism; analyze transcriptomics data; perform comparative analyses; and run a metabolic model.

Domains

microbiology, genomics, biological systems, pathways

Infores ID

Unknown

FAIRsharing ID

Unknown

Product Summary

Contacts

EcoCyc

Email: biocyc-support@sri.com

URL: https://ecocyc.org/contact.shtml

Products

From this Resource

ID	Name	URL	Category	Format	Description
ecocyc.web	EcoCyc Web Interface	ecocyc.org	GraphicalInterface	❔	Web interface for EcoCyc database
ecocyc.api	EcoCyc Web Services	web-services.shtml	ProgrammingInterface	❔	Web services and APIs for programmati...
ecocyc.metabolic_model	EcoCyc Metabolic Model	79	ProcessProduct	❔	Metabolic model for E. coli K-12 deri...

From other Resources

ID	Name	URL	Category	Format	Description
obo-db-ingest.rhea.sssom.tsv	rhea SSSOM	rhea.sssom.tsv (150.6 KB)	MappingProduct	sssom	rhea SSSOM

Details

EcoCyc is a comprehensive database that captures information from over 44,000 publications for Escherichia coli K-12 substr. MG1655. It is part of the larger BioCyc collection of thousands of Pathway/Genome Databases for sequenced genomes.

EcoCyc provides detailed information on:

E. coli genes and their regulation
Metabolic pathways and reactions
Protein complexes and functions
Transporters and small molecules

The database supports various analytical tools including:

Transcriptomics and metabolomics data analysis
Comparative genome analysis across more than 500 E. coli strains
Metabolic pathway visualization and analysis
Quantitative metabolic modeling