is a Knowledge Graph.
EpiGraphDB is an analytical platform and graph database for health data science that integrates Mendelian randomization causal estimates across a wide range of phenotypes with diverse bioinformatic and epidemiological resources. It supports systematic causal inference, data mining, and exploration through a web application, API, R package, and curated graph knowledge base.
health, biomedical, genomics, investigations
Unknown
Unknown
Unknown
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| epigraphdb.web | EpiGraphDB Web UI | epigraphdb.org | GraphicalInterface | http | Web application for interactive explo... |
| epigraphdb.api | EpiGraphDB REST API | api.epigraphdb.org | ProgrammingInterface | ❔ | Public REST API for programmatic acce... |
| epigraphdb.rpackage | epigraphdb R Package | epigraphdb-r | ProgrammingInterface | ❔ | R client package providing higher-lev... |
| epigraphdb.examples | EpiGraphDB Example Notebooks | paper-case-studies | DocumentationProduct | ❔ | Example notebooks demonstrating EpiGr... |
| epigraphdb.graph | EpiGraphDB Graph Database | graph-database | GraphProduct | neo4j | Integrated graph knowledge base combi... |
| epigraphdb.docs | EpiGraphDB Documentation | docs.epigraphdb.org | DocumentationProduct | http | Documentation hub containing conceptu... |
EpiGraphDB integrates causal inference results generated via Mendelian randomization across numerous phenotypes with complementary bioinformatic and epidemiological datasets. The platform enables hypothesis generation, pleiotropy assessment, pathway and drug target prioritization, literature triangulation, and ontology mapping within a unified graph structure. Access pathways include a rich web UI, REST API, R package, documentation, and example notebooks.
Liu Y, Elsworth B, Erola P, Haberland V, Hemani G, Lyon M, Zheng J, Lloyd O, Vabistsevits M, Gaunt TR. EpiGraphDB: a database and data mining platform for health data science. Bioinformatics. 2020. doi:10.1093/bioinformatics/btaa961
Submit issues via the GitHub repository or email feedback@epigraphdb.org. Follow updates on Twitter (@epigraphdb).
Created: September 03, 2025 | Last modified: September 03, 2025