is a Data Source.
FANTOM5 (Functional Annotation of the Mammalian Genome 5) is a RIKEN-led international project that built a promoter-level mammalian expression atlas using Cap Analysis of Gene Expression (CAGE). It maps transcription start sites and quantifies promoter and enhancer activity across a broad collection of human and mouse primary cells, tissues, and cell lines. The resource provides genome-wide catalogues of CAGE peaks (promoters) and transcribed enhancers together with their expression profiles, supporting studies of gene regulation and cell-type-specific transcription.
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| fantom5.atlas | FANTOM5 Expression Atlas Data Files | datafiles | Product | tsv | Downloadable data files for the FANTO... |
| fantom5.sstar | FANTOM5 SSTAR Browser | sstar | Graphical Interface | http | SSTAR (Semantic catalogue of Samples,... |
| fantom5.zenbu | FANTOM5 ZENBU Browser | zenbu | Graphical Interface | http | ZENBU is the interactive data integra... |
| fantom5.docs | FANTOM5 Project Website | 5 | Documentation | http | FANTOM5 project website with document... |
| ID | Name | URL | Category | Format | Relation | Description |
|---|---|---|---|---|---|---|
| biobtree.api | BioBTree REST API | api | Programming Interface | http | had primary source | REST API for searching identifiers an... |
| genecards.web.interface | GeneCards Web Interface | www.genecards.org | Graphical Interface | http | had primary source | Web-based interface for searching and... |
| biobtree.graph.human-subgraph | BioBTree Knowledge Graph - Human Subgraph (KGX) | 20816742 | Graph | kgx | had primary source | Human-scoped, Neo4j-ready subgraph of... |
| genomickb.graph | GenomicKB Graph Dump | genomickb-a-knowledgebase-for-the-human-genome | Graph | http | had primary source | GenomicKB 1.0 Neo4j Database Dump (Re... |
FANTOM5 (Functional Annotation of the Mammalian Genome 5) is a RIKEN-led international collaboration that produced a promoter-level mammalian expression atlas. Using Cap Analysis of Gene Expression (CAGE), the project mapped transcription start sites and quantified the activity of promoters and enhancers across a large panel of human and mouse primary cells, tissues, and cell lines.
The resource provides genome-wide catalogues of CAGE peaks (promoters) and transcribed enhancers, together with their expression profiles, and exposes the data through downloadable files and interactive browsers (SSTAR and ZENBU). It is a widely used reference for gene regulation, promoter and enhancer usage, and cell-type-specific transcription. FANTOM5 data are distributed under a Creative Commons Attribution 4.0 International (CC BY 4.0) license.
Created: June 15, 2026 | Last modified: September 23, 2026