is a Data Source.
FlyBase is a comprehensive database of genomic and genetic data for Drosophila melanogaster (fruit fly) and related species. It provides curated information on genes, genomes, phenotypes, genetic variants, stocks, and experimental tools for the Drosophila research community. The database integrates sequence data, genome annotations, functional characterizations, expression patterns, genetic interactions, disease models, and orthology relationships. FlyBase serves as the primary reference for Drosophila gene nomenclature and provides extensive tools for querying and analyzing genomic data across multiple Drosophila species.
genomics, organisms, biological systems
Warning: No license entered
infores:flybase
Unknown
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| flybase.genome.annotations.gff | FlyBase Genome Annotations | FlyBase:Downloads_Overview | Product | gff | Genome annotation files for Drosophil... |
| flybase.genome.sequences.fasta | FlyBase Genome Sequences | FlyBase:Downloads_Overview | Product | fasta | Complete genome sequences for Drosoph... |
| flybase.gene.sequences.fasta | FlyBase Gene Sequences | FlyBase:Downloads_Overview | Product | fasta | Gene, transcript, and protein sequenc... |
| flybase.bulk.data | FlyBase Bulk Data Files | FlyBase:Downloads_Overview | Product | tsv | Bulk data files containing gene annot... |
| flybase.jbrowse | FlyBase JBrowse Genome Browser | flybase.org | GraphicalInterface | ❔ | Interactive genome browser for visual... |
| flybase.web.interface | FlyBase Web Interface | flybase.org | GraphicalInterface | ❔ | Web-based search and query interface ... |
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| rnacentral.portal | RNAcentral Portal | rnacentral.org | GraphicalInterface | http | Web portal for searching and browsing... |
| rnacentral.api | RNAcentral REST API | api | ProgrammingInterface | http | REST API for programmatic access to R... |
| rnacentral.ftp | RNAcentral FTP Archive | RNAcentral | Product | http | FTP archive with current and archived... |
| rnacentral.public-db | RNAcentral Public Postgres Database | public-database | DataModelProduct | postgres | Public PostgreSQL database for direct... |
| genecards.model.organisms ⚠ | GeneCards Model Organism Data | www.genecards.org | Product | http | Model organism data from FlyBase, SGD... |
| string.protein.links | STRING Protein Links | protein.links.v12.0.txt.gz (128.7 GB) | GraphProduct | txt | protein network data (full network, s... |
| string.protein.links.detailed | STRING Protein Links Detailed | protein.links.detailed.v12.0.txt.gz (189.6 GB) | GraphProduct | txt | protein network data (full network, i... |
| string.protein.links.full | STRING Protein Links Full | protein.links.full.v12.0.txt.gz (199.6 GB) | GraphProduct | txt | protein network data (full network, i... |
| string.protein.physical.links | STRING Protein Physical Links | protein.physical.links.v12.0.txt.gz (11.1 GB) | GraphProduct | txt | protein network data (physical subnet... |
| string.protein.physical.links.detailed | STRING Protein Physical Links Detailed | protein.physical.links.detailed.v12.0.txt.gz (13.8 GB) | GraphProduct | txt | protein network data (physical subnet... |
| string.protein.physical.links.full | STRING Protein Physical Links Full | protein.physical.links.full.v12.0.txt.gz (14.5 GB) | GraphProduct | txt | protein network data (physical subnet... |
| string.cog.links | STRING COG Links | COG.links.v12.0.txt.gz (176.8 MB) | GraphProduct | txt | association scores between orthologou... |
| string.cog.links.detailed | STRING COG Links Detailed | COG.links.detailed.v12.0.txt.gz (238.7 MB) | GraphProduct | txt | association scores (incl. subscores p... |
| string.database | STRING Database Network Schema | network_schema.v12.0.sql.gz (262.2 GB) | GraphProduct | ❔ | full database, part II: the networks ... |
Created: September 09, 2025 | Last modified: October 08, 2025