is a Knowledge Graph.
It is part of the Ber collection.
Global Biotic Interactions (GloBI) integrates and normalizes species interaction datasets (e.g., predation, pollination, parasitism, mutualism, host-pathogen) from many primary sources to provide open, queryable access to organism-to-organism interaction records with taxonomic resolution and provenance.
environment, biological systems, public health
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| globi.portal | GloBI Portal | www.globalbioticinteractions.org | GraphicalInterface | http | Search and browse interface for inter... |
| globi.api | GloBI API | how-to | ProgrammingInterface | http | REST-style API endpoints for programm... |
| globi.datasets | GloBI Datasets | datasets | Product | http | Bulk data export and dataset listing ... |
| globi.interactions.tsv | GloBI interpreted interactions (TSV) | interactions.tsv.gz (2.8 GB) | Product | tsv | Tab-separated integrated species inte... |
| globi.interactions.csv ⚠ | GloBI interpreted interactions (CSV) | interactions.csv.gz | Product | csv | Comma-separated integrated species in... |
| globi.verbatim_interactions.tsv | GloBI verbatim interactions (TSV) | verbatim-interactions.tsv.gz (787.2 MB) | Product | tsv | Tab-separated verbatim species intera... |
| globi.verbatim_interactions.csv ⚠ | GloBI verbatim interactions (CSV) | verbatim-interactions.csv.gz | Product | csv | Comma-separated verbatim species inte... |
| globi.refuted_interactions.tsv | GloBI refuted interactions (TSV) | refuted-interactions.tsv.gz (16.7 MB) | Product | tsv | Tab-separated refuted species interac... |
| globi.refuted_interactions.csv ⚠ | GloBI refuted interactions (CSV) | refuted-interactions.csv.gz | Product | csv | Comma-separated refuted species inter... |
| globi.refuted_verbatim_interactions.csv ⚠ | GloBI refuted verbatim interactions (CSV) | refuted-verbatim-interactions.csv.gz | Product | csv | Comma-separated refuted verbatim spec... |
| globi.interactions.nq | GloBI interactions RDF (N-Quads) | interactions.nq.gz (12.2 GB) | Product | nquads | RDF N-Quads representation of interac... |
| globi.neo4j.graphdb | GloBI Neo4j graph database snapshot | neo4j-graphdb.zip (8.4 GB) | Product | neo4j | Neo4j graph database backup (v3.5.x) ... |
| globi.datasets.tsv | GloBI datasets index (TSV) | datasets.tsv.gz (4.3 KB) | Product | tsv | Tab-separated dataset namespace index |
| globi.datasets.csv ⚠ | GloBI datasets index (CSV) | datasets.csv.gz | Product | csv | Comma-separated dataset namespace index |
| globi.taxon_map.tsv | GloBI taxonomic name map | taxonMap.tsv.gz (106.1 MB) | Product | tsv | Tab-separated taxonomic name mapping ... |
| globi.taxon_cache.tsv | GloBI taxonomic hierarchy cache | taxonCache.tsv.gz (295.8 MB) | Product | tsv | Tab-separated taxonomic hierarchy and... |
| globi.citations.tsv | GloBI data citations (TSV) | citations.tsv.gz (38.9 MB) | Product | tsv | Tab-separated data citations |
| globi.citations.csv ⚠ | GloBI data citations (CSV) | citations.csv.gz | Product | csv | Comma-separated data citations |
| globi.refuted_verbatim_interactions.tsv | GloBI refuted verbatim interactions (TSV) | refuted-verbatim-interactions.tsv.gz (2.4 MB) | Product | tsv | Tab-separated refuted species interac... |
| globi.fields.json ⚠ | interactionFields.json | interactionFields?type=json | Product | json | Field (column) definitions JSON endpoint |
| globi.fields.csv | interactionFields.csv | interactionFields?type=csv (15.5 KB) | Product | csv | Field (column) definitions CSV endpoint |
| globi.docs | GloBI Documentation | about | DocumentationProduct | http | About and methodological documentatio... |
| globi.release | GloBI Archived Release (Zenodo) | 2478263 | Product | http | Zenodo DOI badge pointing to latest a... |
| globi.bee.interactions | Bee Interaction Data from Global Biotic Interactions | 7753956 | Product | tsv | Bee interaction data extracted from G... |
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| emikg.kg | EMI Knowledge Graph | zenodo.17079767 | GraphProduct | kgx | Graph version of the Earth Metabolome... |
| emikg.sparql | EMI KG SPARQL Endpoint | metrin-kg | ProgrammingInterface | http | SPARQL endpoint for programmatic acce... |
| emikg.web | EMI KG SPARQL Query Editor | emi | GraphicalInterface | ❔ | Web-based SPARQL query editor for the... |
Created: September 14, 2025 | Last modified: December 15, 2025