is a Data Model.
It is part of these collections: Translator, BER
Translation of JGI GOLD (Genomes OnLine Database) ecosystem classification paths to OWL, plus mappings to MIxS and environment ontologies like ENVO.
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| goldterms.data.owl ⚠ | Main GOLDTERMS OWL release | goldterms.owl | DataModelProduct | owl | |
| goldterms.bioportal | GOLDTERMS on BioPortal | GOLDTERMS | GraphicalInterface | owl | |
| goldterms.definitions.yaml | GOLD definitions in YAML format | gold_definitions.yaml (27.2 KB) | DataModelProduct | yaml | |
| ID | Name | URL | Category | Format | Relation | Description |
|---|---|---|---|---|---|---|
| metatraits.traits | metaTraits Trait List | traits | Product | http | had primary source | Trait data table listing all 140+ har... |
| metatraits.ncbi.family-summary | metaTraits NCBI Family Summary | ncbi_family_summary.jsonl.gz (1.5 MB) | Product | mixed | was derived from | Family-level harmonized trait annotat... |
| metatraits.ncbi.genus-summary | metaTraits NCBI Genus Summary | ncbi_genus_summary.jsonl.gz (5.2 MB) | Product | mixed | was derived from | Genus-level harmonized trait annotati... |
| metatraits.ncbi.species-summary | metaTraits NCBI Species Summary | ncbi_species_summary.jsonl.gz (32.5 MB) | Product | mixed | was derived from | Species-level harmonized trait annota... |
| metatraits.gtdb.family-summary | metaTraits GTDB Family Summary | gtdb_family_summary.jsonl.gz (4.4 MB) | Product | mixed | was derived from | Family-level harmonized trait annotat... |
| metatraits.gtdb.genus-summary | metaTraits GTDB Genus Summary | gtdb_genus_summary.jsonl.gz (15.6 MB) | Product | mixed | was derived from | Genus-level harmonized trait annotati... |
| metatraits.gtdb.species-summary | metaTraits GTDB Species Summary | gtdb_species_summary.jsonl.gz (45.9 MB) | Product | mixed | was derived from | Species-level harmonized trait annota... |
A rendering of the GOLD (Genomes OnLine Database) ecosystem classification as OWL, plus mappings to MIxS and environment ontologies. The ontology represents environmental classification paths from GOLD, organizing them into a hierarchical structure with three main branches:
Each GOLD path is represented as a class with logical definitions equivalent to the path components. The ontology also includes mappings between GOLD paths and environment ontology expressions (primarily ENVO), conforming to MIxS standards, facilitating interoperability between environmental metadata systems.
Created: March 09, 2025 | Last modified: February 20, 2026