is a Data Source.
It is part of the Ber collection.
Greengenes2 is a comprehensive reference database and phylogenetic tree for 16S rRNA gene sequences that unifies microbial data from multiple sources into a single coherent framework. It provides standardized taxonomic assignments and phylogenetic placement for microbiome research and enables consistent analysis across different studies and sequencing platforms.
biomedical, microbiome, microbiology, organisms
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| greengenes.portal | Greengenes2 Web Portal | greengenes2.ucsd.edu | GraphicalInterface | http | Web-based search interface for queryi... |
| greengenes.ftp | Greengenes2 FTP Archive | current | Product | http | FTP archive containing Greengenes2 da... |
| greengenes.phylogeny | Greengenes2 Phylogenetic Tree | current | Product | txt | Reference phylogenetic tree in Newick... |
| greengenes.sequences | Greengenes2 Sequences | current | Product | fasta | 16S rRNA gene sequences in FASTA form... |
| greengenes.taxonomy | Greengenes2 Taxonomy | current | Product | tsv | Taxonomic assignments and metadata fo... |
| greengenes.qiime2-plugin | q2-greengenes2 Plugin | q2-greengenes2 | ProcessProduct | python | QIIME 2 plugin for integrating Greeng... |
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| rnacentral.portal | RNAcentral Portal | rnacentral.org | GraphicalInterface | http | Web portal for searching and browsing... |
| rnacentral.api | RNAcentral REST API | api | ProgrammingInterface | http | REST API for programmatic access to R... |
| rnacentral.ftp | RNAcentral FTP Archive | RNAcentral | Product | http | FTP archive with current and archived... |
| rnacentral.public-db | RNAcentral Public Postgres Database | public-database | DataModelProduct | postgres | Public PostgreSQL database for direct... |
Created: September 09, 2025 | Last modified: September 24, 2025