is a Data Source.
It is part of the BER collection.
The Genome Taxonomy Database provides a standardized bacterial and archaeal taxonomy derived from genome phylogeny.
Unknown
No external IDs available
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| gtdb.downloads | GTDB Downloads | downloads | Documentation | http | GTDB downloads page listing release m... |
| ID | Name | URL | Category | Format | Relation | Description |
|---|---|---|---|---|---|---|
| obo-db-ingest.gtdb.tsv | gtdb Nodes TSV | gtdb.tsv.gz (2.8 MB) | Product | tsv | had primary source | gtdb Nodes TSV |
| metatraits.gtdb2ncbi | GTDB to NCBI Taxonomy Mapping | GTDB2NCBI.tsv.gz (2.8 MB) | Product | tsv | was derived from | Taxonomy crosswalk from GTDB release ... |
| metatraits.ncbi2gtdb | NCBI to GTDB Taxonomy Mapping | NCBI2GTDB.tsv.gz (2.8 MB) | Product | tsv | was derived from | Taxonomy crosswalk from NCBI taxonomy... |
| metatraits.gtdb.family-summary | metaTraits GTDB Family Summary | gtdb_family_summary_no_predictions.tsv.gz (1.4 MB) | Product | tsv | was derived from | Family-level harmonized trait annotat... |
| metatraits.gtdb.genus-summary | metaTraits GTDB Genus Summary | gtdb_genus_summary_no_predictions.tsv.gz (4.7 MB) | Product | tsv | was derived from | Genus-level harmonized trait annotati... |
| metatraits.gtdb.species-summary | metaTraits GTDB Species Summary | gtdb_species_summary_no_predictions.tsv.gz (12.0 MB) | Product | tsv | was derived from | Species-level harmonized trait annota... |
| obo-db-ingest.gtdb.obo | gtdb OBO | gtdb.obo.gz (6.0 MB) | Product | obo | had primary source | gtdb OBO |
| obo-db-ingest.gtdb.owl | gtdb OWL | gtdb.owl (3.0 MB) | Product | owl | had primary source | gtdb OWL |
| obo-db-ingest.gtdb.json | gtdb OBO Graph JSON | gtdb.json.gz (4.0 MB) | Product | json | had primary source | gtdb OBO Graph JSON |
| obo-db-ingest.gtdb.sssom.tsv | gtdb SSSOM | gtdb.sssom.tsv (1.6 MB) | Mapping | sssom | had primary source | gtdb SSSOM |
| rdf-portal.sparql.primary | RDF Portal Primary SPARQL Endpoint | sparql | Programming Interface | http | was derived from | SPARQL endpoint for the primary RDF P... |
GTDB organizes bacterial and archaeal genomes into a standardized taxonomy and provides releases, trees, and associated data products for microbial comparative genomics.
The public GTDB portal publishes genome-phylogeny-based bacterial and archaeal classifications, current release statistics, and mirrored download endpoints for taxonomy releases and supporting tools used in genome classification workflows.
Created: February 26, 2026 | Last modified: September 23, 2026