is an Aggregator.
Harmonizome is an aggregator of processed gene and protein datasets from diverse online biomedical resources. Harmonizome 3.0 reports 114,997,358 associations among 58,935 genes and 518,340 attributes from 172 datasets provided by 87 resources.
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| harmonizome.portal | Harmonizome Portal | Harmonizome | GraphicalInterface | ❔ | Harmonizome 3.0 web portal for search... |
| harmonizome.downloads | Harmonizome Downloads | download | Product | mixed | Harmonizome 3.0 processed dataset dow... |
| harmonizome.documentation | Harmonizome Documentation | documentation | DocumentationProduct | ❔ | Harmonizome documentation describing ... |
| harmonizome.kg-portal | Harmonizome Knowledge Graph Explorer | harmonizome-kg.maayanlab.cloud | GraphicalInterface | http | Interactive web interface for explori... |
| harmonizome.kg-api | Harmonizome Knowledge Graph API | documentation#kg-api | ProgrammingInterface | json | API endpoint for programmatic access ... |
| harmonizome.kg-neo4j | Harmonizome Knowledge Graph Neo4j Database | harmonizome-kg.maayanlab.cloud | GraphProduct | neo4j | Neo4j knowledge graph serialization o... |
Harmonizome integrates processed datasets about genes and proteins from many online biological resources. Harmonizome 3.0 reports 172 datasets from 87 resources; the current download table displays source labels including Achilles, Allen Brain Atlas, BioGPS, CCLE, ChEA, ClinVar, CTD, DepMap, DisGeNET, DrugBank, ENCODE, GEO, GO, GTEx, GWAS Catalog, HPA, KEGG, MSigDB, Pathway Commons, PhosphoSitePlus, Reactome, TCGA, HuBMAP, WikiPathways, and many additional experimental, literature-derived, and pathway resources.
The Harmonizome knowledge graph portal, API, and Neo4j serialization are treated
as products of this Harmonizome resource rather than as a separate
harmonizome-kg resource.
Created: June 02, 2026 | Last modified: June 03, 2026