is an Aggregator.
It is part of the BER collection.
IntAct is an open, curated molecular interaction database maintained at EMBL‑EBI. It aggregates experimentally-derived interaction evidence from literature curation and direct submissions, and distributes data in PSI‑MI XML and MITAB formats along with curated datasets and documentation.
proteomics, systems biology
infores:intact
Unknown
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| intact.portal | IntAct Portal | home | GraphicalInterface | http | Web portal for browsing, searching, a... |
| intact.api | IntAct Web Service | ws | ProgrammingInterface | http | IntAct web service and URL-based prog... |
| intact.ftp.psi25 | IntAct PSI-MI XML 2.5 | psi25 | Product | psi_mi_xml | IntAct data in PSI-MI XML 2.5 format ... |
| intact.ftp.psi30 | IntAct PSI-MI XML 3.0 | psi30 | Product | psi_mi_xml | IntAct data in PSI-MI XML 3.0 format ... |
| intact.ftp.psimitab | IntAct PSI-MI MITAB 2.7 | psimitab | Product | psi_mi_mitab | IntAct data in PSI-MI MITAB format (d... |
| intact.ftp.psimitab.all | IntAct MITAB Archive | intact.zip (807.1 MB) | Product | psi_mi_mitab | Entire MITAB export of the database a... |
| intact.datasets | IntAct Datasets | datasets | Product | http | Curated and computational datasets (d... |
| intact.docs.user-guide | IntAct User Guide | user-guide | DocumentationProduct | http | User guide and documentation for sear... |
| afcs.intact.mitab | AFCS IntAct MITAB Dataset | AFCS.zip (704.1 KB) | Product | psi_mi_mitab | IntAct-hosted AFCS protein interactio... |
| ID | Name | URL | Category | Format | Relation | Description |
|---|---|---|---|---|---|---|
| bioteque.embeddings | Bioteque Embeddings | embeddings | Product | ❔ | had primary source | Network embeddings of the Bioteque gr... |
| clinicalkg.graph | CKG Graph Dump | 1 | GraphProduct | mixed | had primary source | Neo4j database dump of the Clinical K... |
| epigraphdb.graph | EpiGraphDB Graph Database | graph-database | GraphProduct | neo4j | had primary source | Integrated graph knowledge base combi... |
| rnacentral.portal | RNAcentral Portal | rnacentral.org | GraphicalInterface | http | had primary source | Web portal for searching and browsing... |
| rnacentral.api | RNAcentral REST API | api | ProgrammingInterface | http | had primary source | REST API for programmatic access to R... |
| rnacentral.ftp | RNAcentral FTP Archive | RNAcentral | Product | http | had primary source | FTP archive with current and archived... |
| rnacentral.public-db | RNAcentral Public Postgres Database | public-database | DataModelProduct | postgres | had primary source | Public PostgreSQL database for direct... |
| automat.intact | intact_automat | e5b936f966a02c2c | GraphProduct | kgx-jsonl | had primary source | IntAct Automat |
| cancer-genome-interpreter.clinicalkg.graph | CKG Graph Dump | 1 | GraphProduct | mixed | had primary source | Neo4j database dump of the Clinical K... |
| genecards.protein.interactions ⚠ | GeneCards Protein Interactions | www.genecards.org | Product | http | had primary source | Protein interaction data aggregated f... |
| irefindex.database | iRefIndex Database | ❔ | Product | psi_mi_mitab | had primary source | Historical consolidated protein inter... |
| translator.intact.graph | Translator IntAct KGX Graph | latest | GraphProduct | kgx-jsonl | had primary source | KGX JSONL graph package for IntAct di... |
| unibiomap.links | UniBioMap Graph Links | unibiomap.links.csv (1.3 GB) | GraphProduct | csv | had primary source | Core UniBioMap graph edges file. |
| unibiomap.auxs | UniBioMap Graph Auxiliaries | unibiomap.auxs.tsv (563.9 MB) | GraphProduct | tsv | had primary source | Auxiliary UniBioMap graph annotations... |
| unibiomap.pred | UniBioMap Predicted Graph | unibiomap.pred.csv (2.3 GB) | GraphProduct | csv | had primary source | Predicted UniBioMap graph edges with ... |
| unibiomap.pred.full | UniBioMap Predicted Graph (Full) | unibiomap.pred.full.csv (5.9 GB) | GraphProduct | csv | had primary source | Full unfiltered UniBioMap predicted g... |
| string.protein.links | STRING Protein Links | protein.links.v12.0.txt.gz (128.7 GB) | GraphProduct | txt | had primary source | protein network data (full network, s... |
| string.protein.links.detailed | STRING Protein Links Detailed | protein.links.detailed.v12.0.txt.gz (189.6 GB) | GraphProduct | txt | had primary source | protein network data (full network, i... |
| string.protein.links.full | STRING Protein Links Full | protein.links.full.v12.0.txt.gz (199.6 GB) | GraphProduct | txt | had primary source | protein network data (full network, i... |
| string.protein.physical.links | STRING Protein Physical Links | protein.physical.links.v12.0.txt.gz (11.1 GB) | GraphProduct | txt | had primary source | protein network data (physical subnet... |
| string.protein.physical.links.detailed | STRING Protein Physical Links Detailed | protein.physical.links.detailed.v12.0.txt.gz (13.8 GB) | GraphProduct | txt | had primary source | protein network data (physical subnet... |
| string.protein.physical.links.full | STRING Protein Physical Links Full | protein.physical.links.full.v12.0.txt.gz (14.5 GB) | GraphProduct | txt | had primary source | protein network data (physical subnet... |
| string.cog.links | STRING COG Links | COG.links.v12.0.txt.gz (176.8 MB) | GraphProduct | txt | had primary source | association scores between orthologou... |
| string.cog.links.detailed | STRING COG Links Detailed | COG.links.detailed.v12.0.txt.gz (238.7 MB) | GraphProduct | txt | had primary source | association scores (incl. subscores p... |
| string.database | STRING Database Network Schema | network_schema.v12.0.sql.gz (262.2 GB) | GraphProduct | ❔ | had primary source | full database, part II: the networks ... |
| proteomehd.data | ProteomeHD Data | Data | GraphProduct | ❔ | had primary source | ProteomeHD data files |
| translator.translator_kg.graph | Translator Aggregate KGX Graph | latest | GraphProduct | kgx-jsonl | had primary source | Aggregated KGX JSONL graph package co... |
| ckg.graph | CKG Graph Database Dump | 1 | GraphProduct | neo4j | had primary source | Graph database dump and additional re... |
| imex.portal | IMEx Portal | www.imexconsortium.org | GraphicalInterface | http | had primary source | Search interface for the shared IMEx ... |
| imex.downloads | IMEx Downloads | downloads | Product | psi_mi_mitab | had primary source | IMEx interaction downloads distribute... |
IntAct is a curated molecular interaction database, aggregating experimental evidence from the literature and direct submissions and distributing data in PSI‑MI XML and MITAB formats. It is part of the IMEx consortium and a Global Core Biodata Resource.
Please cite IntAct and any specific datasets used, and refer to the CC BY 4.0 license terms for data reuse.
Created: July 08, 2025 | Last modified: May 04, 2026