is a Data Source.
jPOST (Japan ProteOme STandard Repository/Database) is a Japanese proteomics data environment and a ProteomeXchange member. jPOSTrepo accepts raw and processed mass spectrometry datasets, and jPOSTdb reanalyzes public datasets with a unified workflow into a standardized database of peptides, proteins and post-translational modifications, also published as RDF. The FAQ states that all data in jPOSTrepo and jPOSTdb are released under CC0.
Unknown
No external IDs available
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| jpost.portal | jPOST Portal | jpostdb.org | Graphical Interface | http | jPOST project portal with news, help,... |
| jpost.repository | jPOST Repository (jPOSTrepo) | repository.jpostdb.org | Graphical Interface | http | jPOSTrepo, the jPOST data repository ... |
| jpost.database | jPOST Database (jPOSTdb) | globe.jpostdb.org | Graphical Interface | http | jPOSTdb, the jPOST database of public... |
| jpost.protein | jPOSTdb Identified Protein Data | jpostdb_protein.zip (11.9 MB) | Product | csv | jPOSTdb identified protein table from... |
| jpost.psm | jPOSTdb PSM Peptide Data | jpostdb_psm.zip (64.6 MB) | Product | csv | jPOSTdb peptide spectrum match (PSM) ... |
| jpost.psm-modification | jPOSTdb PSM Peptide Modification Data | jpostdb_psm_modification.zip (16.0 MB) | Product | csv | jPOSTdb PSM peptide modification tabl... |
| jpost.rdf | jPOSTdb RDF Files | rdf | Product | ttl | Per-dataset Turtle files of the jPOST... |
| jpost.sparql | jPOST Database RDF SPARQL Endpoint | sparql | Programming Interface | http | SPARQL endpoint of the RDF Portal (DB... |
| jpost.ontology | jPOST Ontology | jpost.owl (46.1 KB) | Ontology | ttl | jPOST ontology (Turtle serialization ... |
| jpost.help | jPOST Help | help | Documentation | http | jPOST help pages covering jPOSTrepo s... |
| jpost.rdf-docs | jPOST Database RDF Dataset Page | jpostdb | Documentation | http | RDF Portal dataset page for the jPOST... |
| ID | Name | URL | Category | Format | Relation | Description |
|---|---|---|---|---|---|---|
| omicsdi.portal | OmicsDI Portal | www.omicsdi.org | Graphical Interface | http | had primary source | Web portal for searching and browsing... |
| omicsdi.api | OmicsDI API | index.html | Programming Interface | http | had primary source | Swagger-documented web service for pr... |
| proteomexchange.proteomecentral | ProteomeCentral | proteomecentral.proteomexchange.org | Graphical Interface | http | had primary source | ProteomeCentral, the central index of... |
| proteomexchange.dataset-list | ProteomeXchange Dataset Listing | GetDataset?outputMode=tsv | Product | tsv | had primary source | Full tab-separated listing of all pub... |
| proteomexchange.dataset-records | ProteomeXchange Dataset Records | GetDataset?ID=PXD000001&outputMode=XML | Product | xml | had primary source | Per-dataset ProteomeXchange announcem... |
| rdf-portal.sparql.primary | RDF Portal Primary SPARQL Endpoint | sparql | Programming Interface | http | was derived from | SPARQL endpoint for the primary RDF P... |
jPOST (Japan ProteOme STandard Repository/Database) is a proteomics data environment run by the jPOST project, with support from JST and the National Bioscience Database Center (NBDC). It is a member of the ProteomeXchange consortium.
The NBDC LSDB Archive offers protein, PSM and PSM modification tables as zip files. These files are dated 2021-07-29, so they lag behind the live database and the RDF (version 202509).
The jPOST FAQ states that all data in jPOSTrepo and jPOSTdb, including COVID-19 data, are released under CC0, and the LSDB Archive README says the same. The RDF Portal dataset page lists the jPOST database RDF under CC BY 4.0. This page uses CC0 for the resource and records the RDF Portal license on the SPARQL product.
Created: October 04, 2026 | Last modified: October 04, 2026