is a Data Source.
LncBook is a comprehensive database of human long non-coding RNAs (lncRNAs) with multi-omics annotations. It accommodates 95,243 lncRNA genes and 323,950 transcripts, integrated from multiple resources including GENCODE, RefLnc, CHESS, FANTOM-CAT, and BIGTranscriptome, with strict quality control and curation. The database provides abundant annotations including conservation features across 40 vertebrates, disease/trait-associated variants, DNA methylation profiles, expression profiles across 9 biological contexts, lncRNA-encoded small proteins, lncRNA-protein interactions, and lncRNA-miRNA interactions.
genomics, biological systems
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| lncbook.portal | LncBook Portal | home | GraphicalInterface | http | Main web portal for searching and bro... |
| lncbook.conservation | Conservation Browser | conservation | GraphicalInterface | http | Browse conservation features of lncRN... |
| lncbook.variation | Variation Browser | variation | GraphicalInterface | http | Browse 959,138 disease/trait-associat... |
| lncbook.methylation | Methylation Browser | methylation | GraphicalInterface | http | Browse DNA methylation profiles in 16... |
| lncbook.expression | Expression Browser | expression | GraphicalInterface | http | Browse expression profiles across 9 b... |
| lncbook.sprotein | Small Protein Browser | sprotein | GraphicalInterface | http | Browse 34,012 small proteins encoded ... |
| lncbook.interaction | Interaction Browser | interaction | GraphicalInterface | http | Browse lncRNA-miRNA and lncRNA-protei... |
| lncbook.conversion | ID Conversion Tool | conversion | GraphicalInterface | http | ID conversion tool across 14 resources |
| lncbook.blast | BLAST Search | blast | GraphicalInterface | http | BLAST search tool for sequence simila... |
| lncbook.classification | Classification Tool | classification | GraphicalInterface | http | Genomic location annotation and class... |
| lncbook.lgc | LGC Coding Potential Predictor | lgc | GraphicalInterface | http | LGC coding potential prediction tool |
| lncbook.statistics | Statistics Page | statistics | DocumentationProduct | http | Comprehensive database statistics and... |
| lncbook.downloads ⚠ | Downloads | download | Product | http | Downloadable data files including gen... |
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| rnacentral.portal | RNAcentral Portal | rnacentral.org | GraphicalInterface | http | Web portal for searching and browsing... |
| rnacentral.api | RNAcentral REST API | api | ProgrammingInterface | http | REST API for programmatic access to R... |
| rnacentral.ftp | RNAcentral FTP Archive | RNAcentral | Product | http | FTP archive with current and archived... |
| rnacentral.public-db | RNAcentral Public Postgres Database | public-database | DataModelProduct | postgres | Public PostgreSQL database for direct... |
Created: January 05, 2019 | Last modified: October 21, 2025