is a Data Source.
Mouse Genome Informatics is the international database resource for the laboratory mouse, providing integrated genetic, genomic, and biological data to support studies of human health and disease.
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| mgi.portal | Mouse Genome Informatics Portal | www.informatics.jax.org | Graphical Interface | http | Main Mouse Genome Informatics portal ... |
| ID | Name | URL | Category | Format | Relation | Description |
|---|---|---|---|---|---|---|
| obo-db-ingest.mgi.tsv | mgi Nodes TSV | mgi.tsv (6.3 MB) | Product | tsv | had primary source | mgi Nodes TSV |
| enrichr-kg.graph | Enrichr-KG Neo4j Database | enrichr-kg-042123.dump (498.0 MB) | Graph | neo4j | had primary source | Neo4j graph database integrating Enri... |
| gencode.mouse.gtf | GENCODE Mouse Annotations GTF | gencode.vM38.annotation.gtf.gz (35.9 MB) | Product | gff | was informed by | Current comprehensive GENCODE gene an... |
| kg-predict.gpkg | GP-KG Knowledge Graph Data | GP_KG.txt (46.2 MB) | Graph | tsv | was derived from | GP-KG tab-delimited knowledge graph c... |
| mousemine.web | MouseMine Web Interface | begin.do | Graphical Interface | http | was derived from | Web-based interface for searching, qu... |
| mousemine.api | MouseMine API | api.do | Programming Interface | http | was derived from | Programmatic access to MouseMine data... |
| mousemine.templates | MouseMine Query Templates | templates.do | Graphical Interface | http | was derived from | Pre-built query templates for common ... |
| mousemine.querybuilder | MouseMine QueryBuilder | customQuery.do | Graphical Interface | http | was derived from | Custom query construction tool for bu... |
| genecards.web.interface | GeneCards Web Interface | www.genecards.org | Graphical Interface | http | had primary source | Web-based interface for searching and... |
| gp-kg.graph | GP-KG | GP_KG.txt (46.2 MB) | Graph | txt | was derived from | GP_KG.txt |
| kg-alzheimers.graph ⚠ | KGX Distribution of KG-Alzheimers | kg-alzheimers.tar.gz (201.1 MB) | Graph | kgx | had primary source | KGX Distribution of KG-Alzheimers |
| sri-reference-kg.graph | SRI-Reference KG (KGX distribution) | monarch-kg.tar.gz (219.4 MB) | Graph | kgx | had primary source | KGX distribution of the SRI-Reference KG |
| neo.model | neo OWL release | neo.owl (2.0 GB) | Ontology | owl | had primary source | OWL release of neo |
| neo.obo | NEO (OBO format) | neo.obo (650.1 MB) | Ontology | obo | had primary source | OBO format release of NEO, built from... |
| obo-db-ingest.mgi.obo | mgi OBO | mgi.obo.gz (9.2 MB) | Product | obo | had primary source | mgi OBO |
| obo-db-ingest.mgi.owl | mgi OWL | mgi.owl.gz (14.8 MB) | Product | owl | had primary source | mgi OWL |
| obo-db-ingest.mgi.json | mgi OBO Graph JSON | mgi.json.gz (11.7 MB) | Product | json | had primary source | mgi OBO Graph JSON |
| obo-db-ingest.mgi.sssom.tsv | mgi SSSOM | mgi.sssom.tsv (1.0 MB) | Mapping | sssom | had primary source | mgi SSSOM |
| service-kp.trapi | Service Provider TRAPI | Service%20Provider | Programming Interface | http | had primary source | TRAPI endpoint for the Service Provid... |
| babel.compendia | Babel Compendia | compendia | Product | json | had primary source | Babel compendia, one file per Biolink... |
| dbnsfp.academic | dbNSFP Academic Branch | download | Product | tsv | had primary source | Academic branch of dbNSFP (v5.4a at t... |
| dbnsfp.commercial | dbNSFP Commercial Branch | license | Product | tsv | had primary source | Commercial branch of dbNSFP (v5.4c at... |
| pavs-kg.sparql | PAVS SPARQL Endpoint | sparql | Programming Interface | http | had primary source | Public Virtuoso SPARQL endpoint for t... |
| pavs-kg.portal | PAVS Web Portal | pavs.phenomebrowser.net | Graphical Interface | http | had primary source | PAVS web portal with phenotype-based ... |
| pavs-kg.api | PAVS REST API | docs | Programming Interface | http | had primary source | FastAPI REST API backing the PAVS por... |
| hcop.web | HCOP Search | hcop | Graphical Interface | http | was derived from | HCOP web search for orthologs of one ... |
| hcop.all-seven-column | HCOP All Species Orthologs (7 column) | human_all_hcop_seven_column.txt.gz (25.2 MB) | Mapping | tsv | was derived from | All human ortholog assertions from HC... |
| hcop.all-sixteen-column | HCOP All Species Orthologs (16 column) | human_all_hcop_sixteen_column.txt.gz (39.9 MB) | Mapping | tsv | was derived from | All human ortholog assertions from HC... |
| hcop.species-downloads | HCOP Per-species Bulk Downloads | tsv | Product | http | was derived from | HCOP bulk downloads page with pre-com... |
Mouse Genome Informatics (MGI) is The Jackson Laboratory’s flagship knowledgebase for the laboratory mouse. It integrates mouse genes, alleles, strains, phenotypes, gene expression, disease models, and reference nomenclature so that mouse biology can be used effectively in comparative and translational research.
This registry page treats the MGI portal as the owned entry point for the resource itself. The downstream OBO-DB-Ingest and Enrichr-KG products are kept as propagated products because they legitimately reuse MGI content in derivative integration workflows.
Created: February 26, 2026 | Last modified: September 23, 2026