is a Data Source.
MirGeneDB is a manually curated database of microRNA genes, providing validated and annotated microRNA gene entries for over 21,000 genes from 114 metazoan species. It offers uniform nomenclature, evolutionary context, and downloadable data for all species and families.
genomics, biological systems
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| mirgenedb.portal | MirGeneDB Web Portal | mirgenedb.org | GraphicalInterface | http | Web interface for browsing, searching... |
| mirgenedb.species_downloads | MirGeneDB Species-Specific Downloads | download | Product | http | Downloadable FASTA, GFF, BED, and tab... |
| mirgenedb.covariance | MirGeneDB Covariance Models | covariance | Product | http | Downloadable covariance models for mo... |
| mirgenedb.reads | MirGeneDB Processed Read Data | download | Product | fasta | Downloadable processed FASTA files of... |
| mirgenedb.bulk | MirGeneDB Bulk Data Archive | download | Product | http | Bulk download ZIP archives for all mi... |
| mirgenedb.info | MirGeneDB Information and Help | information | DocumentationProduct | http | Documentation and information about M... |
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| rnacentral.portal | RNAcentral Portal | rnacentral.org | GraphicalInterface | http | Web portal for searching and browsing... |
| rnacentral.api | RNAcentral REST API | api | ProgrammingInterface | http | REST API for programmatic access to R... |
| rnacentral.ftp | RNAcentral FTP Archive | RNAcentral | Product | http | FTP archive with current and archived... |
| rnacentral.public-db | RNAcentral Public Postgres Database | public-database | DataModelProduct | postgres | Public PostgreSQL database for direct... |
MirGeneDB is a manually curated database of microRNA genes, providing validated and annotated entries for over 21,000 genes from 114 metazoan species. The database offers uniform nomenclature, evolutionary context, and downloadable data for all species and families. Users can browse, search, and download microRNA gene data in multiple formats (FASTA, GFF, BED, tabular, ZIP) and access covariance models for conserved families. For more information, visit the MirGeneDB portal.
Created: September 09, 2025 | Last modified: October 15, 2025