is a Ontology.
It is part of the OBO Foundry collection.
A global community effort to harmonize multiple disease resources to yield a coherent merged ontology.
infores:mondo
Unknown
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| mondo.owl | Mondo OWL edition | mondo.owl (230.7 MB) | Ontology | owl | Complete ontology with merged imports. |
| mondo.obo | Mondo OBO Format edition | mondo.obo (48.7 MB) | Ontology | obo | OBO serialization of mondo.owl. |
| mondo.json | Mondo JSON edition | mondo.json (98.1 MB) | Ontology | obo | Obographs serialization of mondo.owl. |
| mondo.mondo-base.owl | Mondo Base Release | mondo-base.owl (216.7 MB) | Ontology | owl | The main ontology plus axioms connect... |
| mondo.mondo-simple.owl | Mondo Simple Release | mondo-simple.owl (205.5 MB) | Ontology | owl | The main ontology classes and their h... |
| mondo.sssom | MONDO SSSOM | mondo.sssom.tsv (1.4 MB) | Mapping | sssom | MONDO SSSOM. Mappings from MONDO iden... |
| ID | Name | URL | Category | Format | Relation | Description |
|---|---|---|---|---|---|---|
| ubkg.neo4j | UBKG Neo4j Docker Distribution | ubkg-downloads.xconsortia.org | Graph | neo4j | had primary source | Turnkey neo4j distributions that depl... |
| ubkg.csv | UBKG Ontology CSV Files | ubkg-downloads.xconsortia.org | Graph | csv | had primary source | Ontology CSV files that can be import... |
| kg-microbe.graph.raw | KG-Microbe KGX Graph - Raw | latest | Graph | kgx | had primary source | Raw source files for all KG-Microbe f... |
| kg-microbe.graph.core | KG-Microbe KGX Graph - Core | latest | Graph | kgx | had primary source | The core KG KG-Microbe-Core with onto... |
| kg-microbe.graph.biomedical | KG-Microbe KGX Graph - Biomedical | latest | Graph | kgx | had primary source | Core plus human biomedical data (onto... |
| kg-microbe.graph.function | KG-Microbe KGX Graph - Function | latest | Graph | kgx | had primary source | Core plus Uniprot genome annotations |
| kg-microbe.graph.biomedical-function | KG-Microbe KGX Graph - Biomedical-Function | KGMicrobe-biomedical-function-20250222.tar.gz (4.3 GB) | Graph | kgx | had primary source | Biomedical plus Uniprot genome annota... |
| microbiomekg.api | MicrobiomeKG Plover TRAPI API | mbkp | Programming Interface | http | had primary source | Plover-hosted TRAPI web API for query... |
| pheknowlator.graph | PheKnowLator graph | knowledge_graphs?pageState=(%22StorageObjectListTable%22:(%22f%22:%22%255B%255D%22))&inv=1&invt=Ab5_1Q&project=pheknowlator | Graph | owl | had primary source | PheKnowLator graph files, including s... |
| rtx-kg2.graph.nodes | RTX-KG2.10.1c KGX JSONL Nodes | kg2c-2.10.1-v1.0-nodes.jsonl.gz (359.1 MB) | Graph | kgx-jsonl | had primary source | Nodes for KGX distribution of the RTX... |
| rtx-kg2.graph.edges | RTX-KG2.10.1c KGX JSONL Edges | kg2c-2.10.1-v1.0-edges.jsonl.gz (1.7 GB) | Graph | kgx-jsonl | had primary source | Edges for KGX distribution of the RTX... |
| rtx-kg2.neo4j | RTX-KG2 Neo4j | arax.ncats.io | Programming Interface | http | had primary source | Neo4j distribution of the RTX-KG2 as ... |
| icees-kg.graph | KGX distribution of the ICEES Exposures KP | 1.5.0 | Graph | kgx-jsonl | had primary source | KGX distribution of the ICEES Exposur... |
| icees-kg.trapi | ICEES KG TRAPI API | icees-kg-trapi | Programming Interface | http | had primary source | Translator Reasoner API (TRAPI) endpo... |
| icees-kg.metadata | ICEES KG Metadata | metadata-metadata-get-icees-kg | Product | json | had primary source | Meta knowledge graph and metadata des... |
| rna-kg.kg.neo4j | RNA-KG Neo4j Dump | rnakgv20.dump (3.7 GB) | Graph | neo4j | had primary source | RNA-KG as a Neo4j Dump |
| rna-kg.kg.nodes | RNA-KG Nodes | nodes.csv (4.1 GB) | Graph | csv | had primary source | RNA-KG Nodes in CSV format |
| rna-kg.kg.edges | RNA-KG Edges | edges.csv (17.1 GB) | Graph | csv | had primary source | RNA-KG Edges in CSV format |
| epigraphdb.graph | EpiGraphDB Graph Database | graph-database | Graph | neo4j | had primary source | Integrated graph knowledge base combi... |
| efo.owl | EFO OWL | efo.owl (229.5 MB) | Ontology | owl | had primary source | The latest release of EFO in OWL format |
| efo.obo | EFO OBO | efo.obo (61.1 MB) | Ontology | obo | had primary source | The latest release of EFO in OBO format |
| drug-approvals-kp.graph.nodes | Drug Approvals KP Graph Nodes | drug_approvals_kg_nodes_v0.3.9.tsv (685.0 KB) | Graph | kgx | had primary source | Nodes for the Drug Approvals KP, v0.3.9 |
| drug-approvals-kp.graph.edges | Drug Approvals KP Graph Edges | drug_approvals_kg_edges_v0.3.9.tsv (29.6 MB) | Graph | kgx | had primary source | Edges for the Drug Approvals KP, v0.3.9 |
| medgen.mondo-history | Mondo CUI History | MONDO_CUI_history.txt (989.1 KB) | Product | txt | had primary source | History file tracking changes to Mond... |
| raras.portal | Raras Portal | raras.org | Graphical Interface | http | was informed by | Main Raras portal for searching rare ... |
| raras.encyclopedia | Raras Encyclopedia | explorar | Graphical Interface | http | was informed by | Rare disease encyclopedia for browsin... |
| medkg.site | MedKG Site | medkg | Graphical Interface | http | had primary source | Graphical interface for MedKG |
| rdkg.tpf | RDKG TPF | rdkg | Programming Interface | http | had primary source | Triple Pattern Fragments endpoint for... |
| pharmebinet.json | PharMeBINet JSON Release | content (1.8 GB) | Graph | json | was derived from | PharMeBINet V2 JSON release published... |
| pharmebinet.tsv | PharMeBINet TSV Release | content (1.8 GB) | Graph | tsv | was derived from | PharMeBINet V2 TSV release published ... |
| pharmebinet.graphml | PharMeBINet GraphML Release | content (1.9 GB) | Graph | mixed | was derived from | PharMeBINet V2 GraphML release publis... |
| pharmebinet.neo4j | PharMeBINet Neo4j Database | content (3.6 GB) | Graph | neo4j | was derived from | PharMeBINet V2 Neo4j database release... |
| pharmebinet.neo4j.dump | PharMeBINet Neo4j Dump | content (3.4 GB) | Graph | neo4j | was derived from | PharMeBINet V2 Neo4j dump release pub... |
| gtrx.data ⚠ | gTRx Data | metadata | Product | mixed | was informed by | BioThings GTRx association collection... |
| medi.github | medic GitHub Repository | medic | Process | http | was informed by | Active GitHub repository for MeDI/med... |
| medi.matrix_indication_list | Matrix Indication List | matrix_indication_list.xlsx (2.1 MB) | Product | xlsx | used | Matrix indication list spreadsheet fr... |
| orphanet.scientific_knowledge_files | Orphanet Scientific Knowledge Files | orphanet-scientific-knowledge-files | Product | xml | was informed by | Orphanet scientific knowledge files f... |
| cardiokg.neo4j | CardioKG Neo4j graph construction scripts | zenodo.16025953 | Graph | neo4j | used | Neo4j construction artifacts for Card... |
| biobtree.api | BioBTree REST API | api | Programming Interface | http | had primary source | REST API for searching identifiers an... |
| genecards.web.interface | GeneCards Web Interface | www.genecards.org | Graphical Interface | http | had primary source | Web-based interface for searching and... |
| biobtree.graph.human-subgraph | BioBTree Knowledge Graph - Human Subgraph (KGX) | 20816742 | Graph | kgx | had primary source | Human-scoped, Neo4j-ready subgraph of... |
| kg-alzheimers.graph ⚠ | KGX Distribution of KG-Alzheimers | kg-alzheimers.tar.gz (201.1 MB) | Graph | kgx | had primary source | KGX Distribution of KG-Alzheimers |
| kg-covid-19.graph ⚠ | KG-COVID-19 graph | kg-covid-19 | Graph | kgx | had primary source | KGX nodes and edges for KG-COVID-19 |
| kg-idg.graph ⚠ | KGX Distribution of KG-IDG | kg-idg.tar.gz | Graph | kgx | had primary source | KGX Distribution of KG-IDG |
| np-kg.graph.tsv | NP-KG TSV | NP-KG_v3.0.0.tsv?download=1 (1.0 GB) | Graph | tsv | had primary source | Merged KG with ontology-grounded KG a... |
| np-kg.graph.networkx | NP-KG gpickle | NP-KG_v3.0.0.gpickle?download=1 (892.7 MB) | Graph | mixed | had primary source | Merged KG with ontology-grounded KG a... |
| primekg.graph ⚠ | PrimeKG Full Dataset | 6180620 | Graph | csv | had primary source | The full PrimeKG dataset containing d... |
| sri-reference-kg.graph | SRI-Reference KG (KGX distribution) | monarch-kg.tar.gz (219.4 MB) | Graph | kgx | had primary source | KGX distribution of the SRI-Reference KG |
| ncatsgardkg.graph | NCATS GARD Knowledge Graph | processed | Graph | http | was influenced by | Integrated rare-disease knowledge gra... |
| nlm-ckn.graph | nlm-ckn-graph | nlm-ckn.org | Graph | http | was influenced by | The NLM-CKN knowledge graph of cellul... |
| oard-kg.sparql | Open Annotations for Rare Diseases (OARD) Knowledge Graph SPARQL | sparql | Programming Interface | http | was influenced by | SPARQL endpoint for Open Annotations ... |
| oard-kg.tpf | Open Annotations for Rare Diseases (OARD) Knowledge Graph TPF | oard-kg | Programming Interface | http | was influenced by | Triple Pattern Fragments endpoint for... |
| sniff.federation-nodes | Sniff KGX federation export, nodes | sniff_nodes.tsv (3.6 MB) | Graph | kgx | was derived from | A Biolink-conformant KGX TSV node fil... |
| sniff.federation-edges | Sniff KGX federation export, edges | sniff_edges.tsv (5.0 MB) | Graph | kgx | was derived from | A Biolink-conformant KGX TSV edge fil... |
A global community effort to harmonize multiple disease resources to yield a coherent merged ontology.
Complete ontology with merged imports.
URL: http://purl.obolibrary.org/obo/mondo.owl
Format: owl
OBO serialization of mondo.owl.
URL: http://purl.obolibrary.org/obo/mondo.obo
Format: obo
Obographs serialization of mondo.owl.
URL: http://purl.obolibrary.org/obo/mondo.json
Format: obo
The main ontology plus axioms connecting to select external ontologies, excluding the external ontologies themselves
URL: http://purl.obolibrary.org/obo/mondo/mondo-base.owl
Format: owl
The main ontology classes and their hierarchies, without references to external terms.
URL: http://purl.obolibrary.org/obo/mondo/mondo-simple.owl
Format: owl
Domains: biomedical
Taxon: NCBITaxon:33208
This resource was automatically synchronized from the OBO Foundry registry.
Created: April 22, 2025 | Last modified: September 16, 2026