motrpac

is a Data Source.

The Molecular Transducers of Physical Activity Consortium (MoTrPAC) Data Hub is a national research initiative that generates a comprehensive molecular map of the effects of exercise and physical activity training. The data repository provides multi-omics datasets documenting molecular changes from exercise across multiple tissues, including transcriptomics, proteomics, metabolomics, and epigenomics data. The complete young adult rat endurance training dataset is publicly available, featuring quantitative results and analyses from 20 tissues across 29 assays and 5 time points, studying male and female animals. The data hub provides both browsable study data and pre-bundled datasets organized by tissue type and omics platform, all released under CC BY 4.0 license. The resource includes phenotypic data, sample-level metadata, quality control metrics, and quantitative results to enable comprehensive analysis of the temporal dynamics of multi-omic responses to endurance exercise training.

Domains

biological systems, health, proteomics, genomics, systems biology

License

CC BY 4.0

Homepage

motrpac

Repository

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Product Summary

Products

From this Resource
ID Name URL Category Format Description
motrpac.data-browser MoTrPAC Data Browser data-download GraphicalInterface http Interactive data browser for explorin...
motrpac.phenotype Rat Young Adult Endurance Training - Phenotype Data data-download Product csv Phenotypic data from young adult rats...
motrpac.epigenomics Rat Young Adult Endurance Training - Epigenomics Data data-download Product csv Epigenomics data including ATAC-seq a...
motrpac.transcriptomics Rat Young Adult Endurance Training - Transcriptomics Data data-download Product csv RNA-seq analyses, sample-level metada...
motrpac.proteomics-untargeted Rat Young Adult Endurance Training - Proteomics (Untargeted) data-download Product csv Untargeted proteomics data including ...
motrpac.metabolomics-untargeted Rat Young Adult Endurance Training - Metabolomics (Untargeted) data-download Product csv Untargeted metabolomics analyses, sam...
motrpac.metabolomics-targeted Rat Young Adult Endurance Training - Metabolomics (Targeted) data-download Product csv Targeted metabolomics analyses, sampl...
motrpac.proteomics-targeted Rat Young Adult Endurance Training - Proteomics (Targeted/Immunoassay) data-download Product csv Targeted proteomics immunoassay data ...
motrpac.video-tutorials MoTrPAC Data Hub Video Tutorials motrpac-data.org DocumentationProduct http Video tutorials demonstrating how to ...
motrpac.data-hub MoTrPAC Data Hub Portal motrpac-data.org GraphicalInterface http Main portal for the MoTrPAC Data Hub ...
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ID Name URL Category Format Description
ubkg.neo4j UBKG Neo4j Docker Distribution ubkg-downloads.xconsortia.org GraphProduct Turnkey neo4j distributions that depl...
ubkg.csv UBKG Ontology CSV Files ubkg-downloads.xconsortia.org GraphProduct csv Ontology CSV files that can be import...

KG-Registry Curators

MoTrPAC BioInformatics Center at Stanford University

Details

Molecular Transducers of Physical Activity Consortium (MoTrPAC) Data Hub

Overview

The Molecular Transducers of Physical Activity Consortium (MoTrPAC) Data Hub is a comprehensive data repository and resource center for a national research initiative aimed at generating a molecular map of the effects of exercise and physical activity training. The consortium brings together researchers to study how physical activity influences molecular changes across multiple tissues and biological systems.

Mission and Goals

MoTrPAC’s primary objective is to map the dynamic responses to exercise at the molecular level. The consortium generates multi-omics datasets that document comprehensive molecular changes resulting from exercise training, enabling researchers to understand the mechanisms by which physical activity promotes health and prevents disease.

Data Resources

Young Adult Rat Endurance Training Study

The complete young adult rat endurance training dataset is publicly available, representing a landmark study published in Nature (2024). This comprehensive dataset includes:

Study Design:

  • Animals: Male and female young adult rats (6-month old)
  • Tissues: 20 different tissue types
  • Assays: 29 assays across multiple omics platforms
  • Time Points: 5 time points throughout the training period
  • Exercise Modality: Endurance training protocol

Available Data Types:

  1. Phenotypic Data: Comprehensive phenotypic measurements and metadata from trained animals
  2. Epigenomics: ATAC-seq and RRBS (Reduced Representation Bisulfite Sequencing) data
  3. Transcriptomics: RNA-seq data across all tissues
  4. Proteomics (Untargeted):
    • Acetyl Proteomics
    • Global Proteomics
    • Phosphoproteomics
    • Protein Ubiquitination
  5. Metabolomics (Untargeted): Comprehensive metabolite profiling
  6. Metabolomics (Targeted): Focused metabolite measurements
  7. Proteomics (Targeted): Immunoassay-based protein quantification

Tissue-Specific Datasets

Pre-bundled datasets are available for individual tissues, including:

  • Gastrocnemius (skeletal muscle)
  • Heart
  • Liver
  • Lung
  • Kidney
  • Brown adipose tissue
  • White adipose tissue
  • Blood RNA
  • Plasma

Each tissue-specific dataset includes analyses, sample-level metadata, quality control metrics, and quantitative results across all relevant omics platforms.

Data Organization and Access

Data Structure

All datasets include:

  • Quantitative Results: Processed and normalized molecular measurements
  • Sample-Level Metadata: Detailed information about each biological sample
  • Quality Control Metrics: QC assessments for each assay and sample
  • Analysis Results: Statistical analyses and differential expression/abundance results

Data Formats

Data are provided in standardized formats:

  • CSV files for quantitative data and metadata
  • Comprehensive documentation for data interpretation
  • R objects for advanced analysis workflows

Download Options

The MoTrPAC Data Hub offers flexible data access:

  1. Interactive Browser: Browse and select specific data by tissue, ome, or assay type
  2. Pre-bundled Downloads: Complete datasets organized by omics type or tissue
  3. Programmatic Access: R packages for data retrieval and analysis

Key Findings

The temporal dynamics study revealed:

  • A network of genes functionally related to longevity, muscle system processes, and response to mechanical stimulus
  • Training-differential features whose abundances significantly changed over the training time course
  • Molecular adaptations occurring at different time points during the training period
  • Cross-tissue coordination of molecular responses to exercise

Technical Infrastructure

The MoTrPAC Data Hub is designed and maintained by the MoTrPAC BioInformatics Center at Stanford University. The infrastructure includes:

  • Data Processing Pipeline: Standardized workflows from data ingestion to quality control, processing, and analysis
  • Visualization Tools: Interactive tools for exploring molecular changes across tissues and time points
  • Documentation: Comprehensive technical guides for data interpretation and analysis
  • Source Code Repository: Open access to analysis code and processing pipelines

Licensing and Data Sharing

All MoTrPAC data are released under the Creative Commons Attribution 4.0 International (CC BY 4.0) license, promoting open science and data reuse. Users are required to:

  • Cite the MoTrPAC Marker Paper (Cell, 2020)
  • Cite dataset-specific publications when using particular datasets
  • Acknowledge data from motrpac-data.org in resulting publications

Publications

Marker Paper

The foundational MoTrPAC publication describing the consortium’s goals, structure, and approach:

  • MoTrPAC Study Group (2020). “Molecular Transducers of Physical Activity Consortium (MoTrPAC): Mapping the Dynamic Responses to Exercise.” Cell 181(7):1464-1474. https://doi.org/10.1016/j.cell.2020.06.004

Major Data Release

The comprehensive analysis of the young adult rat endurance training study:

  • MoTrPAC Study Group (2024). “Temporal dynamics of the multi-omic response to endurance exercise training.” Nature 629:174-183. https://doi.org/10.1038/s41586-023-06877-w

Community Engagement

MoTrPAC maintains active engagement with the research community through:

  • Monthly Virtual Office Hours: Regular opportunities to learn about data and ask questions
  • Newsletter: Updates on new data releases and available resources
  • Tutorial Videos: Comprehensive guides for using the Data Hub
  • Contact Support: Direct assistance for data access and interpretation

Ongoing Studies

While the young adult rat endurance training dataset is currently publicly available, MoTrPAC has additional ongoing studies across:

  • Different exercise modalities
  • Various animal models and age groups
  • Multiple tissue types and molecular platforms

Data from these studies will be released as they become available, expanding the molecular map of exercise responses.

Funding

MoTrPAC is funded by the NIH Common Fund, supporting this large-scale collaborative effort to understand the molecular mechanisms underlying the health benefits of physical activity.

Is this information incorrect or incomplete? Request an update.

Created: October 29, 2025 | Last modified: October 29, 2025