is a Data Source.
The Molecular Signatures Database (MSigDB) is a comprehensive collection of tens of thousands of annotated gene sets for use with Gene Set Enrichment Analysis (GSEA) software. MSigDB includes curated gene sets from pathway databases, gene ontology annotations, hallmark gene sets, immunologic signatures, regulatory target sets, and cell type-specific signatures derived from single-cell sequencing studies. Available for both human and mouse.
genomics, systems biology, pathways
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infores:msigdb
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| msigdb.browser | MSigDB Web Browser | msigdb | GraphicalInterface | http | Web interface for browsing, searching... |
| msigdb.downloads.human | MSigDB Human Gene Sets Downloads | downloads.jsp#msigdb | Product | mixed | Downloadable gene set files in GMT, X... |
| msigdb.downloads.mouse | MSigDB Mouse Gene Sets Downloads | downloads.jsp#msigdb | Product | mixed | Downloadable gene set files for mouse... |
| msigdb.investigate | MSigDB Investigate Tool | annotate.jsp | GraphicalInterface | ❔ | Interactive tool for computing overla... |
| msigdb.gene_families | MSigDB Gene Families Tool | gene_families.jsp | GraphicalInterface | ❔ | Tool for categorizing gene set member... |
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| ubkg.neo4j | UBKG Neo4j Docker Distribution | ubkg-downloads.xconsortia.org | GraphProduct | ❔ | Turnkey neo4j distributions that depl... |
| ubkg.csv | UBKG Ontology CSV Files | ubkg-downloads.xconsortia.org | GraphProduct | csv | Ontology CSV files that can be import... |
Created: October 30, 2025 | Last modified: October 30, 2025