is a Data Source.
NCBI Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
biological systems
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infores:ncbi-gene
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| ncbigene.gene2accession | Gene to Accession Mapping | gene2accession.gz (3.7 GB) | MappingProduct | tsv | Gene to accession mapping data provid... |
| ncbigene.gene2ensembl | Gene to Ensembl Mapping | gene2ensembl.gz (269.7 MB) | MappingProduct | tsv | Gene to Ensembl mapping data providin... |
| ncbigene.gene2go | Gene to GO Mapping | gene2go.gz (1.1 GB) | MappingProduct | tsv | Gene to Gene Ontology mapping data pr... |
| ncbigene.gene2pubmed | Gene to PubMed Mapping | gene2pubmed.gz (219.6 MB) | MappingProduct | tsv | Gene to PubMed mapping data providing... |
| ncbigene.gene2refseq | Gene to RefSeq Mapping | gene2refseq.gz (1.9 GB) | MappingProduct | tsv | Gene to RefSeq mapping data providing... |
| ncbigene.gene_group | Gene Group Data | gene_group.gz (288.5 KB) | Product | tsv | Gene group information defining funct... |
| ncbigene.gene_history | Gene History Data | gene_history.gz (145.9 MB) | Product | tsv | Gene history data tracking changes an... |
| ncbigene.gene_info | Gene Information | gene_info.gz (1.3 GB) | Product | tsv | Comprehensive gene information includ... |
| ncbigene.gene_neighbors | Gene Neighbors Data | gene_neighbors.gz (1.6 GB) | Product | tsv | Gene neighbor information showing gen... |
| ncbigene.gene_orthologs | Gene Orthologs Data | gene_orthologs.gz (103.5 MB) | Product | tsv | Gene ortholog information showing evo... |
| ncbigene.gene_refseq_uniprotkb_collab | Gene RefSeq UniProtKB Collaboration Data | gene_refseq_uniprotkb_collab.gz (1.1 GB) | MappingProduct | tsv | Gene to RefSeq/UniProtKB collaboratio... |
| ncbigene.gene_summary | Gene Summary Data | gene_summary.gz (19.9 MB) | Product | tsv | Gene summary information providing br... |
| ncbigene.mim2gene_medgen | MIM to Gene MedGen Mapping | mim2gene_medgen (932.6 KB) | MappingProduct | tsv | MIM to Gene and MedGen mapping data c... |
| ncbigene.search | NCBI Gene Search Interface | gene | GraphicalInterface | http | Web-based search and browsing interfa... |
| ID | Name | URL | Category | Format | Relation | Description |
|---|---|---|---|---|---|---|
| spoke.graph | SPOKE Graph | ❔ | GraphProduct | ❔ | had primary source | The SPOKE knowledge graph containing ... |
| alzkb.browser | AlzKB Graph Database Browser | login | GraphicalInterface | http | had primary source | A browser interface for a knowledge g... |
| alzkb.data | AlzKB Data Release (Version 2.0.0) | v2.0.0 | GraphProduct | ❔ | had primary source | Memgraph data release for AlzKB. |
| pharmkg.graph | PharmKG graph | 4077338 | GraphProduct | ❔ | had primary source | Cleaned benchmark graph (PharmKG-8k) ... |
| pheknowlator.graph | PheKnowLator graph | knowledge_graphs?pageState=(%22StorageObjectListTable%22:(%22f%22:%22%255B%255D%22))&inv=1&invt=Ab5_1Q&project=pheknowlator | GraphProduct | owl | had primary source | PheKnowLator graph files, including s... |
| omim.mim2gene | OMIM mim2gene.txt | mim2gene.txt (951.6 KB) | MappingProduct | tsv | had primary source | Public mapping of MIM numbers to NCBI... |
| rna-kg.kg.neo4j | RNA-KG Neo4j Dump | rnakgv20.dump (3.7 GB) | GraphProduct | neo4j | had primary source | RNA-KG as a Neo4j Dump |
| rna-kg.kg.nodes | RNA-KG Nodes | nodes.csv (4.1 GB) | GraphProduct | csv | had primary source | RNA-KG Nodes in CSV format |
| rna-kg.kg.edges | RNA-KG Edges | edges.csv (17.1 GB) | GraphProduct | csv | had primary source | RNA-KG Edges in CSV format |
| microbiomekg.api | MicrobiomeKG Plover API | mbkp | ProgrammingInterface | http | had primary source | TRAPI web API for querying MicrobiomeKG |
| aop-db.data | AOP-DB Data | adverse-outcome-pathway-database-aop-db-version-2 | Product | ❔ | had primary source | The EPA has developed the Adverse Out... |
| genecards.gene.annotations ⚠ | GeneCards Gene Annotations | www.genecards.org | Product | http | had primary source | Integrated gene annotation data aggre... |
| biogrid.identifiers | BIOGRID-IDENTIFIERS-LATEST.tab.zip | BIOGRID-IDENTIFIERS-LATEST.tab.zip | MappingProduct | tsv | had primary source | A single delimited text file format c... |
| unibiomap.links | UniBioMap Graph Links | unibiomap.links.csv (1.3 GB) | GraphProduct | csv | had primary source | Core UniBioMap graph edges file. |
| unibiomap.auxs | UniBioMap Graph Auxiliaries | unibiomap.auxs.tsv (563.9 MB) | GraphProduct | tsv | had primary source | Auxiliary UniBioMap graph annotations... |
| unibiomap.pred | UniBioMap Predicted Graph | unibiomap.pred.csv (2.3 GB) | GraphProduct | csv | had primary source | Predicted UniBioMap graph edges with ... |
| unibiomap.pred.full | UniBioMap Predicted Graph (Full) | unibiomap.pred.full.csv (5.9 GB) | GraphProduct | csv | had primary source | Full unfiltered UniBioMap predicted g... |
| translator.translator_kg.graph | Translator Aggregate KGX Graph | latest | GraphProduct | kgx-jsonl | had primary source | Aggregated KGX JSONL graph package co... |
Created: June 04, 2025 | Last modified: February 20, 2026