ncbitaxon

is a Data Source.

The NCBI Taxonomy Database is the standard nomenclature and classification repository for the International Nucleotide Sequence Database Collaboration (INSDC), comprising the GenBank, ENA (EMBL), and DDBJ databases. It includes organism names and taxonomic lineages for each of the sequences represented in the INSDC's nucleotide and protein sequence databases. The taxonomy database is manually curated by a small group of scientists at the NCBI who use current taxonomic literature to maintain a phylogenetic taxonomy for source organisms represented in sequence databases.

Domains

organisms

License

CC0 1.0

Homepage

ncbitaxon

Repository

GitHub

Infores ID

Unknown

FAIRsharing ID

FAIRsharing.fj07xj

Publications

Products

From this Resource
ID Name URL Category Format Description
ncbitaxon.dump NCBI Taxonomy Dump Files taxdump.tar.gz Product NCBI Taxonomy database in dump format...
ncbitaxon.new_dump NCBI Taxonomy New-Style Dump Files new_taxdump.tar.gz Product NCBI Taxonomy containing the new-styl...
ncbitaxon.web NCBI Taxonomy Browser wwwtax.cgi GraphicalInterface Web interface for browsing and search...
ncbitaxon.owl NCBI Taxonomy OWL ncbitaxon.owl DataModelProduct owl OWL format version of the NCBI Taxono...
ncbitaxon.obo NCBI Taxonomy OBO ncbitaxon.obo DataModelProduct obo OBO format version of the NCBI Taxono...
ncbitaxon.json NCBI Taxonomy JSON ncbitaxon.json DataModelProduct json OBOGraphs JSON version of the NCBI Ta...
ncbitaxon.taxslim NCBI Taxonomy Slim taxslim.owl DataModelProduct owl Slimmed-down version of the NCBI Taxo...
From other Resources
ID Name URL Category Format Description
spoke.graph SPOKE Graph GraphProduct The SPOKE knowledge graph containing ...
rtx-kg2.graph.nodes RTX-KG2.10.1c KGX JSONL Nodes kg2c-2.10.1-v1.0-nodes.jsonl.gz GraphProduct kgx-jsonl Nodes for KGX distribution of the RTX...
rtx-kg2.graph.edges RTX-KG2.10.1c KGX JSONL Edges kg2c-2.10.1-v1.0-edges.jsonl.gz GraphProduct kgx-jsonl Edges for KGX distribution of the RTX...
rtx-kg2.neo4j RTX-KG2 Neo4j arax.ncats.io ProgrammingInterface Neo4j distribution of the RTX-KG2 as ...

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