is a Data Source.
The NCBI Taxonomy Database is the standard nomenclature and classification repository for the International Nucleotide Sequence Database Collaboration (INSDC), comprising the GenBank, ENA (EMBL), and DDBJ databases. It includes organism names and taxonomic lineages for each of the sequences represented in the INSDC's nucleotide and protein sequence databases. The taxonomy database is manually curated by a small group of scientists at the NCBI who use current taxonomic literature to maintain a phylogenetic taxonomy for source organisms represented in sequence databases.
organisms
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ID | Name | URL | Category | Format | Description |
---|---|---|---|---|---|
ncbitaxon.dump | NCBI Taxonomy Dump Files | taxdump.tar.gz | Product | ❔ | NCBI Taxonomy database in dump format... |
ncbitaxon.new_dump | NCBI Taxonomy New-Style Dump Files | new_taxdump.tar.gz | Product | ❔ | NCBI Taxonomy containing the new-styl... |
ncbitaxon.web | NCBI Taxonomy Browser | wwwtax.cgi | GraphicalInterface | ❔ | Web interface for browsing and search... |
ncbitaxon.owl | NCBI Taxonomy OWL | ncbitaxon.owl | DataModelProduct | owl | OWL format version of the NCBI Taxono... |
ncbitaxon.obo | NCBI Taxonomy OBO | ncbitaxon.obo | DataModelProduct | obo | OBO format version of the NCBI Taxono... |
ncbitaxon.json | NCBI Taxonomy JSON | ncbitaxon.json | DataModelProduct | json | OBOGraphs JSON version of the NCBI Ta... |
ncbitaxon.taxslim | NCBI Taxonomy Slim | taxslim.owl | DataModelProduct | owl | Slimmed-down version of the NCBI Taxo... |
ID | Name | URL | Category | Format | Description |
---|---|---|---|---|---|
spoke.graph | SPOKE Graph | ❔ | GraphProduct | ❔ | The SPOKE knowledge graph containing ... |
rtx-kg2.graph.nodes | RTX-KG2.10.1c KGX JSONL Nodes | kg2c-2.10.1-v1.0-nodes.jsonl.gz | GraphProduct | kgx-jsonl | Nodes for KGX distribution of the RTX... |
rtx-kg2.graph.edges | RTX-KG2.10.1c KGX JSONL Edges | kg2c-2.10.1-v1.0-edges.jsonl.gz | GraphProduct | kgx-jsonl | Edges for KGX distribution of the RTX... |
rtx-kg2.neo4j | RTX-KG2 Neo4j | arax.ncats.io | ProgrammingInterface | ❔ | Neo4j distribution of the RTX-KG2 as ... |