is a Data Source.
OMA (Orthologous MAtrix) is a database of orthologous genes among multiple species, providing a systematic classification of orthologs across complete genomes.
biological systems, organisms
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| oma.site | OMA Browser | oma | GraphicalInterface | ❔ | Web interface for exploring OMA data |
| oma.api.rest | OMA REST API | api | ProgrammingInterface | ❔ | RESTful API for accessing OMA data |
| oma.api.sparql | OMA SPARQL | sparql | ProgrammingInterface | ❔ | SPARQL endpoint for accessing OMA data |
| oma.groups.txt | OMA Groups (Text) | OmaGroups.txt.gz | Product | ❔ | OMA orthology groups in plain text fo... |
| oma.groups.orthoxml | OMA Groups (OrthoXML) | OmaGroups.orthoxml | Product | xml | OMA orthology groups in OrthoXML format |
| oma.hogs.orthoxml | OMA HOGs (OrthoXML) | OmaHOGs.orthoxml | Product | xml | Hierarchical Orthologous Groups (HOGs... |
| oma.pairs.txt | OMA Pairwise Orthologs | OrthologousPairs.txt.gz | Product | tsv | Pairwise orthologs in tab-separated t... |
| oma.proteins.fasta | OMA Protein Sequences | oma-proteins.fa.gz | Product | fasta | Protein sequences from all genomes in... |
| oma.cdna.eukaryotes.fasta | OMA cDNA Sequences (Eukaryotes) | oma-eukaryotes.cdna.fa.gz | Product | fasta | cDNA sequences for Eukaryotic genomes... |
| oma.cdna.prokaryotes.fasta | OMA cDNA Sequences (Prokaryotes) | oma-prokaryotes.cdna.fa.gz | Product | fasta | cDNA sequences for Prokaryotic genome... |
| oma.hdf5 | OMA Browser Database (HDF5) | OmaServer.h5 | Product | ❔ | OMA Browser database in HDF5 format |
| oma.rdf | OMA RDF Data | OMA.ttl.gz | Product | ttl | OMA data in RDF format (Turtle syntax) |
| oma.mapping.uniprot | OMA to UniProt Mapping | oma-uniprot.txt.gz | MappingProduct | tsv | Mapping of OMA identifiers to UniProt... |