is a Data Source.
OMIM (Online Mendelian Inheritance in Man) is a continuously updated, expert-curated catalog of human genes and genetic disorders, focusing on genotype–phenotype relationships and the molecular basis of disease.
biomedical, clinical, genomics
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infores:omim
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| omim.web | OMIM Website | www.omim.org | GraphicalInterface | http | Web interface for browsing and search... |
| omim.api | OMIM API | api | ProgrammingInterface | http | REST-based API for programmatic acces... |
| omim.mim2gene | OMIM mim2gene.txt | mim2gene.txt (951.6 KB) | MappingProduct | tsv | Public mapping of MIM numbers to NCBI... |
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| spoke.graph | SPOKE Graph | ❔ | GraphProduct | ❔ | The SPOKE knowledge graph containing ... |
| ncbigene.mim2gene_medgen | MIM to Gene MedGen Mapping | mim2gene_medgen (932.6 KB) | MappingProduct | tsv | MIM to Gene and MedGen mapping data c... |
| pharmkg.graph | PharmKG graph | 4077338 | GraphProduct | ❔ | Cleaned benchmark graph (PharmKG-8k) ... |
| genecards.gene.annotations ⚠ | GeneCards Gene Annotations | www.genecards.org | Product | http | Integrated gene annotation data aggre... |
| genecards.disease.associations ⚠ | GeneCards Disease Associations | www.genecards.org | Product | http | Disease association data integrated f... |
| unibiomap.links | UniBioMap Graph Links | unibiomap.links.csv (1.3 GB) | GraphProduct | csv | Core UniBioMap graph edges file. |
| unibiomap.auxs | UniBioMap Graph Auxiliaries | unibiomap.auxs.tsv (563.9 MB) | GraphProduct | tsv | Auxiliary UniBioMap graph annotations... |
| unibiomap.pred | UniBioMap Predicted Graph | unibiomap.pred.csv (2.3 GB) | GraphProduct | csv | Predicted UniBioMap graph edges with ... |
| unibiomap.pred.full | UniBioMap Predicted Graph (Full) | unibiomap.pred.full.csv (5.9 GB) | GraphProduct | csv | Full unfiltered UniBioMap predicted g... |
| string.protein.links | STRING Protein Links | protein.links.v12.0.txt.gz (128.7 GB) | GraphProduct | txt | protein network data (full network, s... |
| string.protein.links.detailed | STRING Protein Links Detailed | protein.links.detailed.v12.0.txt.gz (189.6 GB) | GraphProduct | txt | protein network data (full network, i... |
| string.protein.links.full | STRING Protein Links Full | protein.links.full.v12.0.txt.gz (199.6 GB) | GraphProduct | txt | protein network data (full network, i... |
| string.protein.physical.links | STRING Protein Physical Links | protein.physical.links.v12.0.txt.gz (11.1 GB) | GraphProduct | txt | protein network data (physical subnet... |
| string.protein.physical.links.detailed | STRING Protein Physical Links Detailed | protein.physical.links.detailed.v12.0.txt.gz (13.8 GB) | GraphProduct | txt | protein network data (physical subnet... |
| string.protein.physical.links.full | STRING Protein Physical Links Full | protein.physical.links.full.v12.0.txt.gz (14.5 GB) | GraphProduct | txt | protein network data (physical subnet... |
| string.cog.links | STRING COG Links | COG.links.v12.0.txt.gz (176.8 MB) | GraphProduct | txt | association scores between orthologou... |
| string.cog.links.detailed | STRING COG Links Detailed | COG.links.detailed.v12.0.txt.gz (238.7 MB) | GraphProduct | txt | association scores (incl. subscores p... |
| string.database | STRING Database Network Schema | network_schema.v12.0.sql.gz (262.2 GB) | GraphProduct | ❔ | full database, part II: the networks ... |
| medgen.hpo-omim-mapping | MedGen HPO OMIM Mapping | MedGen_HPO_OMIM_Mapping.txt.gz (3.9 MB) | MappingProduct | txt | Combined mappings between MedGen, HPO... |
| obo-db-ingest.omim.ps.tsv | omim.ps Nodes TSV | omim.ps.tsv (9.3 KB) | Product | tsv | omim.ps Nodes TSV |
OMIM (Online Mendelian Inheritance in Man) is a comprehensive, expert-curated knowledgebase of human genes and genetic phenotypes with a focus on genotype–phenotype relationships. Access is provided via the public website and a REST API (registration required). Most bulk download files require registration; the mim2gene.txt mapping is publicly available. Please cite OMIM and relevant literature when using the resource.
Created: June 04, 2025 | Last modified: February 20, 2026