is an Aggregator.
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OmniPath is a comprehensive prior knowledge resource that integrates molecular interactions and biological pathway information from over 100 original databases and resources. It provides unified access to protein-protein interactions, gene regulatory interactions, enzyme-PTM relationships, protein complexes, protein annotations, and intercellular communication data through multiple interfaces including web services, R/Bioconductor packages, Python clients, and Cytoscape plugins.
systems biology, biological systems, proteomics, pathways
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| omnipath.webservice | OmniPath Web Service | queries | ProgrammingInterface | json | Web service API providing programmati... |
| omnipath.r_package | OmnipathR Package | OmnipathR.html | ProgrammingInterface | mixed | R/Bioconductor package (OmnipathR) fo... |
| omnipath.python_client | OmniPath Python Client | omnipath | ProgrammingInterface | python | Python client library providing progr... |
| omnipath.cytoscape_plugin | OmniPath Cytoscape Plugin | omnipath | ProcessProduct | java | Cytoscape plugin for importing and vi... |
| omnipath.explorer | OmniPath Explorer | explore.omnipathdb.org | GraphicalInterface | http | Interactive database explorer for bro... |
| omnipath.pypath | PyPath Database Builder | pypath-omnipath | ProcessProduct | python | Python package (pypath) for building ... |
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| bioteque.embeddings | Bioteque Embeddings | embeddings | Product | ❔ | Network embeddings of the Bioteque gr... |