is a Data Source.
OrthoDB is a comprehensive database of orthologous protein-coding genes across multiple species, providing evolutionary and functional annotations of orthologous groups.
biological systems, organisms
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| orthodb.site | OrthoDB Web Interface | www.orthodb.org | GraphicalInterface | ❔ | Web interface for exploring OrthoDB data |
| orthodb.api.sparql | OrthoDB SPARQL Endpoint | sparql.orthodb.org | ProgrammingInterface | ❔ | SPARQL endpoint for querying OrthoDB ... |
| orthodb.api.rest | OrthoDB API | api | ProgrammingInterface | ❔ | RESTful API for programmatic access t... |
| orthodb.species | OrthoDB Species Data | odb12v1_species.tab.gz | Product | tsv | Tab-separated file with species infor... |
| orthodb.ogs | OrthoDB Orthologous Groups | odb12v1_OGs.tab.gz | Product | tsv | Tab-separated file with information a... |
| orthodb.og2genes | OrthoDB OG to Genes Mapping | odb12v1_OG2genes.tab.gz | MappingProduct | tsv | Tab-separated file mapping orthologou... |
| orthodb.genes | OrthoDB Genes Data | odb12v1_genes.tab.gz | Product | tsv | Tab-separated file with gene informat... |
| orthodb.gene_xrefs | OrthoDB Gene Cross-references | odb12v1_gene_xrefs.tab.gz | MappingProduct | tsv | Tab-separated file with gene cross-re... |
| orthodb.og_xrefs | OrthoDB OG Functional Annotations | odb12v1_OG_xrefs.tab.gz | Product | tsv | Tab-separated file with orthologous g... |
| orthodb.aa_fasta | OrthoDB Protein Sequences | odb12v1_aa_fasta.gz | Product | fasta | FASTA-formatted amino acid sequences ... |
| orthodb.cds_fasta | OrthoDB CDS Sequences | odb12v1_cds_fasta.gz | Product | fasta | FASTA-formatted coding sequences for ... |