is a Data Source.
PathoPhenoDB is a database of human pathogens, the diseases and phenotypes they elicit in human organisms, and information related to drug treatments and mechanisms of drug resistance. Specifically, PathoPhenoDB contains associations between pathogens and diseases, between pathogens and phenotypes, between drugs that are approved to treat particular pathogens, and it identifies genes or proteins within pathogens that can convey resistance to particular drugs.
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Bio-Ontology Research Group
Github: bio-ontology-research-group
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| pathophenodb.data | PathoPhenoDB RDF data, version 3 | patho_pheno_withsymbols.nt (194.4 MB) | GraphProduct | ntriples | PathoPhenoDB data containing pathogen... |
| pathophenodb.web | PathoPhenoDB Web Interface | patho.phenomebrowser.net | GraphicalInterface | http | Web interface for querying and browsi... |
| pathophenodb.docs | PathoPhenoDB Help and Downloads | help | DocumentationProduct | http | PathoPhenoDB help and download naviga... |
| ID | Name | URL | Category | Format | Relation | Description |
|---|---|---|---|---|---|---|
| spoke.graph | SPOKE Graph | data-tools | GraphProduct | http | had primary source | The SPOKE knowledge graph containing ... |
PathoPhenoDB links human pathogens to the diseases, phenotypes, treatments, and drug-resistance mechanisms associated with infectious disease. The resource is designed to support diagnostic reasoning and infectious-disease research by connecting pathogen records with phenotype-driven search and exploration.
The owned products on this page reflect the live PathoPhenoDB interface, RDF
distribution, and help surface. The spoke graph remains listed as a propagated
downstream product because it incorporates PathoPhenoDB as one of many upstream
sources.
Created: May 28, 2025 | Last modified: May 30, 2026