is a Data Source.
Pfam is a large collection of protein families, each represented by multiple sequence alignments and hidden Markov models (HMMs), providing annotations of protein domains and functional sites.
proteomics
Unknown
infores:pfam
Unknown
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| pfam.site | Interface for the Pfam Database | #table | GraphicalInterface | http | The core Pfam database containing pro... |
| pfam.a.models | Pfam-A HMM Library | Pfam-A.hmm.gz (331.1 MB) | Product | ❔ | The Pfam HMM library for Pfam-A famil... |
| pfam.a.data | Pfam-A HMM data | Pfam-A.hmm.dat.gz (637.4 KB) | Product | ❔ | The Pfam HMM data for Pfam-A families... |
| pfam.a.seedalignment | Pfam-A Seed alignment | Pfam-A.seed.gz (164.6 MB) | Product | ❔ | Pfam-A Seed alignment. |
| pfam.a.fullalignment | Pfam-A Full alignment | Pfam-A.full.gz (19.6 GB) | Product | ❔ | Pfam-A Full alignment. |
| pfam.api | InterPro API | api | ProgrammingInterface | json | REST API for programmatic access to P... |
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| spoke.graph | SPOKE Graph | ❔ | GraphProduct | ❔ | The SPOKE knowledge graph containing ... |
| clinicalkg.graph | CKG Graph Dump | 1 | GraphProduct | mixed | Neo4j database dump of the Clinical K... |
| cancer-genome-interpreter.clinicalkg.graph | CKG Graph Dump | 1 | GraphProduct | mixed | Neo4j database dump of the Clinical K... |
| string.protein.links | STRING Protein Links | protein.links.v12.0.txt.gz (128.7 GB) | GraphProduct | txt | protein network data (full network, s... |
| string.protein.links.detailed | STRING Protein Links Detailed | protein.links.detailed.v12.0.txt.gz (189.6 GB) | GraphProduct | txt | protein network data (full network, i... |
| string.protein.links.full | STRING Protein Links Full | protein.links.full.v12.0.txt.gz (199.6 GB) | GraphProduct | txt | protein network data (full network, i... |
| string.protein.physical.links | STRING Protein Physical Links | protein.physical.links.v12.0.txt.gz (11.1 GB) | GraphProduct | txt | protein network data (physical subnet... |
| string.protein.physical.links.detailed | STRING Protein Physical Links Detailed | protein.physical.links.detailed.v12.0.txt.gz (13.8 GB) | GraphProduct | txt | protein network data (physical subnet... |
| string.protein.physical.links.full | STRING Protein Physical Links Full | protein.physical.links.full.v12.0.txt.gz (14.5 GB) | GraphProduct | txt | protein network data (physical subnet... |
| string.cog.links | STRING COG Links | COG.links.v12.0.txt.gz (176.8 MB) | GraphProduct | txt | association scores between orthologou... |
| string.cog.links.detailed | STRING COG Links Detailed | COG.links.detailed.v12.0.txt.gz (238.7 MB) | GraphProduct | txt | association scores (incl. subscores p... |
| string.database | STRING Database Network Schema | network_schema.v12.0.sql.gz (262.2 GB) | GraphProduct | ❔ | full database, part II: the networks ... |