pfocr

is a Data Source.

Pathway Figure OCR (PFOCR) is a resource that extracts biological pathway information from figures in scientific publications using optical character recognition (OCR) and machine learning. PFOCR automatically identifies pathway diagrams in published literature, extracts gene and protein names from pathway figures, and creates structured pathway data. The resource enables discovery of pathway knowledge that exists only in figure format and is not captured in article text or structured databases.

Domains

pathways, literature, biomedical, systems biology

License

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Homepage

pfocr

Repository

GitHub

Infores ID

infores:pfocr

FAIRsharing ID

Unknown

Publications

Products

From this Resource
ID Name URL Category Format Description
pfocr.web PFOCR Web Interface pfocr.wikipathways.org GraphicalInterface http Web interface for searching and brows...
pfocr.data PFOCR Pathway Data pfocr-database Product json Extracted pathway information from li...
pfocr.api PFOCR API pfocr.wikipathways.org ProgrammingInterface http API for accessing PFOCR extracted pat...

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Created: November 05, 2025 | Last modified: November 05, 2025