is a Knowledge Graph.
PharMeBINet is a heterogeneous pharmacological medical biochemical network that integrates biomedical data sources into a graph for studying drugs, adverse drug reactions, genes, proteins, variants, diseases, and their relationships.
No external IDs available
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| pharmebinet.browser | PharMeBINet Web Application | pharmebi.net | Graphical Interface | http | Web application for browsing and quer... |
| pharmebinet.json | PharMeBINet JSON Release | content (3.4 GB) | Graph | json | PharMeBINet V3 JSON release (Zenodo v... |
| pharmebinet.tsv | PharMeBINet TSV Release | content (3.5 GB) | Graph | tsv | PharMeBINet V3 TSV release (Zenodo ve... |
| pharmebinet.graphml | PharMeBINet GraphML Release | content (3.8 GB) | Graph | mixed | PharMeBINet V3 GraphML release (Zenod... |
| pharmebinet.neo4j | PharMeBINet Neo4j Database | content (7.7 GB) | Graph | neo4j | PharMeBINet V3 Neo4j database release... |
| pharmebinet.neo4j.dump | PharMeBINet Neo4j Dump | content (7.5 GB) | Graph | neo4j | PharMeBINet V3 Neo4j dump release (Ze... |
| pharmebinet.data-sources | PharMeBINet Data Sources | datasources | Documentation | http | Data sources documentation page descr... |
PharMeBINet is a large heterogeneous biomedical knowledge graph centered on pharmacology and adverse drug reaction analysis. The project integrates many biomedical resources into a graph database and provides both a public web interface and versioned releases in JSON, TSV, GraphML, and Neo4j formats for downstream analysis.
Version 3 integrates 51 data sources. Its latest Zenodo deposit (doi:10.5281/zenodo.21276722, July 2026) requires Neo4j 5.26.4 or higher for the database files. Newly generated content such as the graph structure, mappings, and derived edges is licensed CC BY 4.0, while content taken from each source keeps that source’s license; every node and edge records its resources and licenses.
Created: April 06, 2026 | Last modified: October 09, 2026