is a General purpose Resource.
PharmGKB collects, curates and disseminates knowledge about clinically actionable gene-drug associations and genotype-phenotype relationships.
health, chemistry and biochemistry, pharmacology, genomics, precision medicine
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| pharmgkb.clinicalannotations | PharmKB Clinical Annotations | clinicalAnnotations.zip (1.2 MB) | Product | tsv | Clinical annotation summaries |
| pharmgkb.clinicalannotations.loe | PharmKB Clinical Annotations (LOE 1-2) | clinicalAnnotations_LOE1-2.zip (265.0 KB) | Product | tsv | Level of evidence 1-2 clinical annota... |
| pharmgkb.variantannotations | PharmKB Variant Annotations | variantAnnotations.zip (3.9 MB) | Product | tsv | Variant annotation summary |
| pharmgkb.relationships | PharmKB Relationships | relationships.zip (1.2 MB) | Product | tsv | Relationships summarized from PharmGK... |
| pharmgkb.guidelineannotations | PharmKB Clinical Guideline Annotations | guidelineAnnotations.json.zip (792.8 KB) | Product | json | Detailed clinical guideline annotations |
| pharmgkb.druglabels | PharmKB Drug Label Annotations | drugLabels.zip (54.6 KB) | Product | tsv | Drug label annotations |
| pharmgkb.pathways.biopax | PharmKB Pathways (BioPax) | pathways-biopax.zip (630.0 KB) | Product | xml | Pathways data in BioPax XML format |
| pharmgkb.pathways.tsv | PharmKB Pathways (TSV) | pathways-tsv.zip (190.5 KB) | Product | tsv | Pathways data in TSV format |
| pharmgkb.pathways.json | PharmKB Pathways (JSON) | pathways.json.zip (1.8 MB) | Product | json | Pathways data in JSON format |
| pharmgkb.clinicalvariants | PharmKB Clinical Variants | clinicalVariants.zip (72.6 KB) | Product | tsv | List of variant-drug pairs and level ... |
| pharmgkb.literatureoccurrences | PharmKB Literature Occurrences | occurrences.zip (1.8 MB) | Product | tsv | List of objects that occur in PharmGK... |
| pharmgkb.automatedannotations | PharmKB Automated Annotations | automated_annotations.zip (1.8 MB) | Product | tsv | Automatically identified possible rel... |
| pharmgkb.genes | PharmKB Genes | genes.zip (2.8 MB) | Product | tsv | Summary of gene information used by P... |
| pharmgkb.variants | PharmKB Variants | variants.zip (830.4 KB) | Product | tsv | Summary of variants annotated by Phar... |
| pharmgkb.drugs | PharmKB Drugs | drugs.zip (700.8 KB) | Product | tsv | Summaries of drug information annotat... |
| pharmgkb.chemicals | PharmKB Chemicals | chemicals.zip (817.2 KB) | Product | tsv | Summaries of chemical information ann... |
| pharmgkb.phenotypes | PharmKB Phenotypes | phenotypes.zip (182.5 KB) | Product | tsv | Summary of disease and other phenotyp... |
| pharmgkb.papers | PharmKB Papers of Interest Archive | PapersOfInterestArchive.csv (123.1 KB) | Product | csv | Archive of papers of interest from Ma... |
| pharmgkb.haplotypefrequencies.ukbb | PharmKB UK Biobank Frequencies | pharmgkb_haplotype_frequencies_UKBB.zip (30.2 KB) | Product | tsv | Haplotype frequencies from UK Biobank... |
| pharmgkb.haplotypefrequencies.allofus | PharmKB AllOfUs Biobank Frequencies | pharmgkb_haplotype_frequencies_AllOfUs.zip (57.1 KB) | Product | tsv | Haplotype, phenotype, and activity sc... |
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| obo-db-ingest.pharmgkb.disease.obo | pharmgkb.disease OBO | pharmgkb.disease.obo (145.0 KB) | Product | obo | pharmgkb.disease OBO |
| obo-db-ingest.pharmgkb.disease.owl | pharmgkb.disease OWL | pharmgkb.disease.owl (174.5 KB) | Product | owl | pharmgkb.disease OWL |
| obo-db-ingest.pharmgkb.disease.json | pharmgkb.disease OBO Graph JSON | pharmgkb.disease.json (175.9 KB) | Product | json | pharmgkb.disease OBO Graph JSON |
| obo-db-ingest.pharmgkb.disease.sssom.tsv | pharmgkb.disease SSSOM | pharmgkb.disease.sssom.tsv (60.8 KB) | MappingProduct | sssom | pharmgkb.disease SSSOM |
| obo-db-ingest.pharmgkb.pathways.obo | pharmgkb.pathways OBO | pharmgkb.pathways.obo (2.7 KB) | Product | obo | pharmgkb.pathways OBO |
| obo-db-ingest.pharmgkb.pathways.owl | pharmgkb.pathways OWL | pharmgkb.pathways.owl (3.7 KB) | Product | owl | pharmgkb.pathways OWL |
| obo-db-ingest.pharmgkb.pathways.json | pharmgkb.pathways OBO Graph JSON | pharmgkb.pathways.json (2.9 KB) | Product | json | pharmgkb.pathways OBO Graph JSON |
| obo-db-ingest.pharmgkb.drug.obo | pharmgkb.drug OBO | pharmgkb.drug.obo (455.0 KB) | Product | obo | pharmgkb.drug OBO |
| obo-db-ingest.pharmgkb.drug.owl | pharmgkb.drug OWL | pharmgkb.drug.owl (518.9 KB) | Product | owl | pharmgkb.drug OWL |
| obo-db-ingest.pharmgkb.drug.json | pharmgkb.drug OBO Graph JSON | pharmgkb.drug.json (539.6 KB) | Product | json | pharmgkb.drug OBO Graph JSON |
| obo-db-ingest.pharmgkb.drug.sssom.tsv | pharmgkb.drug SSSOM | pharmgkb.drug.sssom.tsv (197.5 KB) | MappingProduct | sssom | pharmgkb.drug SSSOM |
| obo-db-ingest.pharmgkb.gene.obo | pharmgkb.gene OBO | pharmgkb.gene.obo (2.0 MB) | Product | obo | pharmgkb.gene OBO |
| obo-db-ingest.pharmgkb.gene.owl | pharmgkb.gene OWL | pharmgkb.gene.owl (2.4 MB) | Product | owl | pharmgkb.gene OWL |
| obo-db-ingest.pharmgkb.gene.json | pharmgkb.gene OBO Graph JSON | pharmgkb.gene.json (2.5 MB) | Product | json | pharmgkb.gene OBO Graph JSON |
| obo-db-ingest.pharmgkb.gene.sssom.tsv | pharmgkb.gene SSSOM | pharmgkb.gene.sssom.tsv (1.5 MB) | MappingProduct | sssom | pharmgkb.gene SSSOM |
| obo-db-ingest.pharmgkb.variant.obo | pharmgkb.variant OBO | pharmgkb.variant.obo (99.7 KB) | Product | obo | pharmgkb.variant OBO |
| obo-db-ingest.pharmgkb.variant.owl | pharmgkb.variant OWL | pharmgkb.variant.owl (104.7 KB) | Product | owl | pharmgkb.variant OWL |
| obo-db-ingest.pharmgkb.variant.json | pharmgkb.variant OBO Graph JSON | pharmgkb.variant.json (90.3 KB) | Product | json | pharmgkb.variant OBO Graph JSON |
| obo-db-ingest.pharmgkb.variant.sssom.tsv | pharmgkb.variant SSSOM | pharmgkb.variant.sssom.tsv (55.3 KB) | MappingProduct | sssom | pharmgkb.variant SSSOM |
| pharmkg.graph | PharmKG graph | 4077338 | GraphProduct | ❔ | Cleaned benchmark graph (PharmKG-8k) ... |