is a General purpose Resource.
PharmGKB collected, curated and disseminated knowledge about clinically actionable gene-drug associations and genotype-phenotype relationships. On 2025-07-30 PharmGKB was succeeded by ClinPGx (registry id clinpgx), which unifies PharmGKB, CPIC and PharmCAT; pharmgkb.org URLs redirect to their clinpgx.org equivalents and the downloads listed here are served from api.clinpgx.org. This page is kept because many registry resources cite pharmgkb as a provenance source. Use clinpgx for the current resource.
infores:pharmgkb
Unknown
Email: feedback@clinpgx.org
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| pharmgkb.clinicalannotations | PharmKB Clinical Annotations | clinicalAnnotations.zip (1.2 MB) | Product | tsv | Clinical annotation summaries |
| pharmgkb.clinicalannotations.loe | PharmKB Clinical Annotations (LOE 1-2) | clinicalAnnotations_LOE1-2.zip (265.0 KB) | Product | tsv | Level of evidence 1-2 clinical annota... |
| pharmgkb.variantannotations | PharmKB Variant Annotations | variantAnnotations.zip (4.1 MB) | Product | tsv | Variant annotation summary |
| pharmgkb.relationships | PharmKB Relationships | relationships.zip (2.3 MB) | Product | tsv | Relationships summarized from PharmGK... |
| pharmgkb.guidelineannotations | PharmKB Clinical Guideline Annotations | guidelineAnnotations.json.zip (841.0 KB) | Product | json | Detailed clinical guideline annotations |
| pharmgkb.druglabels | PharmKB Drug Label Annotations | drugLabels.zip (58.1 KB) | Product | tsv | Drug label annotations |
| pharmgkb.pathways.biopax | PharmKB Pathways (BioPax) | pathways-biopax.zip (619.2 KB) | Product | xml | Pathways data in BioPax XML format |
| pharmgkb.pathways.tsv | PharmKB Pathways (TSV) | pathways-tsv.zip (199.3 KB) | Product | tsv | Pathways data in TSV format |
| pharmgkb.pathways.json | PharmKB Pathways (JSON) | pathways.json.zip (1.8 MB) | Product | json | Pathways data in JSON format |
| pharmgkb.clinicalvariants | PharmKB Clinical Variants | clinicalVariants.zip (72.6 KB) | Product | tsv | List of variant-drug pairs and level ... |
| pharmgkb.literatureoccurrences | PharmKB Literature Occurrences | occurrences.zip (2.8 MB) | Product | tsv | List of objects that occur in PharmGK... |
| pharmgkb.automatedannotations | PharmKB Automated Annotations | automated_annotations.zip (1.8 MB) | Product | tsv | Automatically identified possible rel... |
| pharmgkb.genes | PharmKB Genes | genes.zip (2.8 MB) | Product | tsv | Summary of gene information used by P... |
| pharmgkb.variants | PharmKB Variants | variants.zip (873.8 KB) | Product | tsv | Summary of variants annotated by Phar... |
| pharmgkb.drugs | PharmKB Drugs | drugs.zip (662.3 KB) | Product | tsv | Summaries of drug information annotat... |
| pharmgkb.chemicals | PharmKB Chemicals | chemicals.zip (794.3 KB) | Product | tsv | Summaries of chemical information ann... |
| pharmgkb.phenotypes | PharmKB Phenotypes | phenotypes.zip (183.0 KB) | Product | tsv | Summary of disease and other phenotyp... |
| pharmgkb.papers | PharmKB Papers of Interest Archive | PapersOfInterestArchive.csv (123.1 KB) | Product | csv | Archive of papers of interest from Ma... |
| pharmgkb.haplotypefrequencies.ukbb | PharmKB UK Biobank Frequencies | pharmgkb_haplotype_frequencies_UKBB.zip (28.9 KB) | Product | tsv | Haplotype frequencies from UK Biobank... |
| pharmgkb.haplotypefrequencies.allofus | PharmKB AllOfUs Biobank Frequencies | pharmgkb_haplotype_frequencies_AllOfUs.zip (57.1 KB) | Product | tsv | Haplotype, phenotype, and activity sc... |
| ID | Name | URL | Category | Format | Relation | Description |
|---|---|---|---|---|---|---|
| obo-db-ingest.pharmgkb.disease.obo | pharmgkb.disease OBO | pharmgkb.disease.obo (145.0 KB) | Product | obo | had primary source | pharmgkb.disease OBO |
| obo-db-ingest.pharmgkb.disease.owl | pharmgkb.disease OWL | pharmgkb.disease.owl (174.5 KB) | Product | owl | had primary source | pharmgkb.disease OWL |
| obo-db-ingest.pharmgkb.disease.json | pharmgkb.disease OBO Graph JSON | pharmgkb.disease.json (175.9 KB) | Product | json | had primary source | pharmgkb.disease OBO Graph JSON |
| obo-db-ingest.pharmgkb.disease.sssom.tsv | pharmgkb.disease SSSOM | pharmgkb.disease.sssom.tsv (60.8 KB) | MappingProduct | sssom | had primary source | pharmgkb.disease SSSOM |
| obo-db-ingest.pharmgkb.pathways.obo | pharmgkb.pathways OBO | pharmgkb.pathways.obo (2.7 KB) | Product | obo | had primary source | pharmgkb.pathways OBO |
| obo-db-ingest.pharmgkb.pathways.owl | pharmgkb.pathways OWL | pharmgkb.pathways.owl (3.7 KB) | Product | owl | had primary source | pharmgkb.pathways OWL |
| obo-db-ingest.pharmgkb.pathways.json | pharmgkb.pathways OBO Graph JSON | pharmgkb.pathways.json (2.9 KB) | Product | json | had primary source | pharmgkb.pathways OBO Graph JSON |
| obo-db-ingest.pharmgkb.drug.obo | pharmgkb.drug OBO | pharmgkb.drug.obo (455.0 KB) | Product | obo | had primary source | pharmgkb.drug OBO |
| obo-db-ingest.pharmgkb.drug.owl | pharmgkb.drug OWL | pharmgkb.drug.owl (518.9 KB) | Product | owl | had primary source | pharmgkb.drug OWL |
| obo-db-ingest.pharmgkb.drug.json | pharmgkb.drug OBO Graph JSON | pharmgkb.drug.json (539.6 KB) | Product | json | had primary source | pharmgkb.drug OBO Graph JSON |
| obo-db-ingest.pharmgkb.drug.sssom.tsv | pharmgkb.drug SSSOM | pharmgkb.drug.sssom.tsv (197.5 KB) | MappingProduct | sssom | had primary source | pharmgkb.drug SSSOM |
| obo-db-ingest.pharmgkb.gene.obo | pharmgkb.gene OBO | pharmgkb.gene.obo (2.0 MB) | Product | obo | had primary source | pharmgkb.gene OBO |
| obo-db-ingest.pharmgkb.gene.owl | pharmgkb.gene OWL | pharmgkb.gene.owl (2.4 MB) | Product | owl | had primary source | pharmgkb.gene OWL |
| obo-db-ingest.pharmgkb.gene.json | pharmgkb.gene OBO Graph JSON | pharmgkb.gene.json (2.5 MB) | Product | json | had primary source | pharmgkb.gene OBO Graph JSON |
| obo-db-ingest.pharmgkb.gene.sssom.tsv | pharmgkb.gene SSSOM | pharmgkb.gene.sssom.tsv (1.5 MB) | MappingProduct | sssom | had primary source | pharmgkb.gene SSSOM |
| obo-db-ingest.pharmgkb.variant.obo | pharmgkb.variant OBO | pharmgkb.variant.obo (99.7 KB) | Product | obo | had primary source | pharmgkb.variant OBO |
| obo-db-ingest.pharmgkb.variant.owl | pharmgkb.variant OWL | pharmgkb.variant.owl (104.7 KB) | Product | owl | had primary source | pharmgkb.variant OWL |
| obo-db-ingest.pharmgkb.variant.json | pharmgkb.variant OBO Graph JSON | pharmgkb.variant.json (90.3 KB) | Product | json | had primary source | pharmgkb.variant OBO Graph JSON |
| obo-db-ingest.pharmgkb.variant.sssom.tsv | pharmgkb.variant SSSOM | pharmgkb.variant.sssom.tsv (55.3 KB) | MappingProduct | sssom | had primary source | pharmgkb.variant SSSOM |
| pharmkg.graph | PharmKG graph | 4077338 | GraphProduct | mixed | had primary source | Cleaned benchmark graph (PharmKG-8k) ... |
| genecards.pharmacogenomics ⚠ | GeneCards Pharmacogenomics Data | www.genecards.org | Product | http | had primary source | Pharmacogenomics data from PharmGKB, ... |
| ibkh.graph | iBKH Knowledge Graph | ❔ | GraphProduct | mixed | had primary source | The integrative Biomedical Knowledge ... |
| obo-db-ingest.pharmgkb.disease.tsv | pharmgkb.disease Nodes TSV | pharmgkb.disease.tsv (83.8 KB) | Product | tsv | had primary source | pharmgkb.disease Nodes TSV |
| obo-db-ingest.pharmgkb.drug.tsv | pharmgkb.drug Nodes TSV | pharmgkb.drug.tsv (53.8 KB) | Product | tsv | had primary source | pharmgkb.drug Nodes TSV |
| obo-db-ingest.pharmgkb.gene.tsv | pharmgkb.gene Nodes TSV | pharmgkb.gene.tsv (739.6 KB) | Product | tsv | had primary source | pharmgkb.gene Nodes TSV |
| obo-db-ingest.pharmgkb.pathways.tsv | pharmgkb.pathways Nodes TSV | pharmgkb.pathways.tsv (2.1 KB) | Product | tsv | had primary source | pharmgkb.pathways Nodes TSV |
| obo-db-ingest.pharmgkb.variant.tsv | pharmgkb.variant Nodes TSV | pharmgkb.variant.tsv (18.8 KB) | Product | tsv | had primary source | pharmgkb.variant Nodes TSV |
| oregano.graph | OREGANO Knowledge Graph | Graphs | GraphProduct | http | was derived from | The OREGANO knowledge graph dataset i... |
| pharmebinet.json | PharMeBINet JSON Release | content (1.8 GB) | GraphProduct | json | was derived from | PharMeBINet V2 JSON release published... |
| pharmebinet.tsv | PharMeBINet TSV Release | content (1.8 GB) | GraphProduct | tsv | was derived from | PharMeBINet V2 TSV release published ... |
| pharmebinet.graphml | PharMeBINet GraphML Release | content (1.9 GB) | GraphProduct | mixed | was derived from | PharMeBINet V2 GraphML release publis... |
| pharmebinet.neo4j | PharMeBINet Neo4j Database | content (3.6 GB) | GraphProduct | neo4j | was derived from | PharMeBINet V2 Neo4j database release... |
| pharmebinet.neo4j.dump | PharMeBINet Neo4j Dump | content (3.4 GB) | GraphProduct | neo4j | was derived from | PharMeBINet V2 Neo4j dump release pub... |
| biobtree.api | BioBTree REST API | api | ProgrammingInterface | http | had primary source | REST API for searching identifiers an... |
| genecards.web.interface | GeneCards Web Interface | www.genecards.org | GraphicalInterface | http | had primary source | Web-based interface for searching and... |
| biobtree.graph.human-subgraph | BioBTree Knowledge Graph - Human Subgraph (KGX) | 20816742 | GraphProduct | kgx | had primary source | Human-scoped, Neo4j-ready subgraph of... |
| kg-covid-19.graph ⚠ | KG-COVID-19 graph | kg-covid-19 | GraphProduct | kgx | had primary source | KGX nodes and edges for KG-COVID-19 |
| molecular-data-kp.graph.nodes | Nodes for Molecular Data KP | nodes.tsv (3.4 GB) | GraphProduct | kgx | had primary source | KGX nodes for Molecular Data KP |
| molecular-data-kp.graph.edges | Edges for Molecular Data KP | edges.tsv (18.8 GB) | GraphProduct | kgx | had primary source | KGX edges for Molecular Data KP |
| pubchem.substances.asn | PubChem Substances ASN | ASN | Product | xml | was influenced by | PubChem substance information in ASN.... |
| pubchem.substances.sdf | PubChem Substances SDF | SDF | Product | sdf | was influenced by | PubChem substance information in SDF ... |
| clinpgx.portal | ClinPGx Portal | www.clinpgx.org | GraphicalInterface | ❔ | was derived from | ClinPGx web portal for browsing genes... |
| clinpgx.downloads | ClinPGx Downloads | downloads | DocumentationProduct | ❔ | was derived from | Downloads page listing the bulk data ... |
PharmGKB was a pharmacogenomics knowledge resource covering clinically actionable gene-drug associations and genotype-phenotype relationships.
PharmGKB is now ClinPGx. ClinPGx brings PharmGKB together with CPIC and
PharmCAT under one resource. Since 2025-07-30 all pharmgkb.org links redirect to their
ClinPGx equivalents, and the bulk download files listed here are served from
api.clinpgx.org on the same paths they previously used on api.pharmgkb.org, which
no longer resolves. The feedback address is now feedback@clinpgx.org.
This page is kept on purpose. Many resources in this registry name pharmgkb as a
provenance source, and downstream consumers may still refer to PharmGKB rather than to
ClinPGx. The pharmgkb identifier therefore stays stable, the page is marked inactive,
and use_instead points to clinpgx. The download products remain listed here because
they are the same files under the same paths.
The INFORES catalog had no ClinPGx identifier as of 2026-09-02, so infores_id
remains pharmgkb. That is deliberate.
Created: May 01, 2025 | Last modified: September 02, 2026